Multiple sequence alignment - TraesCS4B01G084400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G084400 chr4B 100.000 5016 0 0 1 5016 82669455 82664440 0.000000e+00 9263.0
1 TraesCS4B01G084400 chr4B 78.268 589 96 14 3096 3670 172356395 172355825 2.870000e-92 350.0
2 TraesCS4B01G084400 chr4B 98.089 157 3 0 2192 2348 588505672 588505828 1.780000e-69 274.0
3 TraesCS4B01G084400 chr4A 92.293 2660 135 24 2367 4983 541338929 541341561 0.000000e+00 3712.0
4 TraesCS4B01G084400 chr4A 94.454 1136 39 7 825 1956 541337555 541338670 0.000000e+00 1727.0
5 TraesCS4B01G084400 chr4A 88.261 230 14 2 1962 2191 541338717 541338933 3.850000e-66 263.0
6 TraesCS4B01G084400 chr4A 86.928 153 12 4 4701 4845 541172935 541173087 1.120000e-36 165.0
7 TraesCS4B01G084400 chr4A 79.397 199 35 5 2370 2566 650324555 650324361 8.760000e-28 135.0
8 TraesCS4B01G084400 chr4A 100.000 32 0 0 4558 4589 541341112 541341143 5.420000e-05 60.2
9 TraesCS4B01G084400 chr4D 93.701 2048 99 9 2703 4746 55582985 55580964 0.000000e+00 3040.0
10 TraesCS4B01G084400 chr4D 93.718 1353 47 12 845 2191 55584964 55583644 0.000000e+00 1993.0
11 TraesCS4B01G084400 chr4D 94.412 340 17 2 2367 2704 55583648 55583309 5.750000e-144 521.0
12 TraesCS4B01G084400 chr4D 87.647 170 14 3 4683 4845 55644667 55644498 1.840000e-44 191.0
13 TraesCS4B01G084400 chr4D 77.714 350 35 23 3706 4038 111555472 111555149 1.860000e-39 174.0
14 TraesCS4B01G084400 chr4D 85.443 158 12 4 4700 4846 55597723 55597566 2.420000e-33 154.0
15 TraesCS4B01G084400 chr4D 78.919 185 34 5 2368 2549 509269284 509269102 2.450000e-23 121.0
16 TraesCS4B01G084400 chr4D 100.000 31 0 0 4560 4590 55581171 55581141 1.950000e-04 58.4
17 TraesCS4B01G084400 chr7B 96.804 751 23 1 1 751 71581776 71581027 0.000000e+00 1253.0
18 TraesCS4B01G084400 chr7B 96.405 751 26 1 1 751 71583081 71582332 0.000000e+00 1236.0
19 TraesCS4B01G084400 chr7B 96.042 758 28 2 1 758 71580470 71579715 0.000000e+00 1232.0
20 TraesCS4B01G084400 chr7B 96.855 159 5 0 2190 2348 148779008 148779166 2.980000e-67 267.0
21 TraesCS4B01G084400 chr7B 91.946 149 12 0 2191 2339 677253783 677253635 5.090000e-50 209.0
22 TraesCS4B01G084400 chr3A 96.800 750 23 1 1 750 579036450 579035702 0.000000e+00 1251.0
23 TraesCS4B01G084400 chr1A 95.733 750 31 1 1 750 6652341 6653089 0.000000e+00 1206.0
24 TraesCS4B01G084400 chr1A 95.485 753 32 2 1 753 531595972 531595222 0.000000e+00 1201.0
25 TraesCS4B01G084400 chrUn 95.219 753 32 3 1 752 3248755 3248006 0.000000e+00 1188.0
26 TraesCS4B01G084400 chrUn 78.283 198 34 7 2380 2572 312499708 312499515 8.820000e-23 119.0
27 TraesCS4B01G084400 chr7A 94.430 754 40 2 1 753 329169239 329169991 0.000000e+00 1158.0
28 TraesCS4B01G084400 chr5A 92.961 753 49 4 1 752 619418957 619419706 0.000000e+00 1094.0
29 TraesCS4B01G084400 chr6B 98.726 157 2 0 2192 2348 600213573 600213417 3.820000e-71 279.0
30 TraesCS4B01G084400 chr6B 95.732 164 6 1 2186 2348 82061606 82061769 3.850000e-66 263.0
31 TraesCS4B01G084400 chr1B 98.101 158 3 0 2191 2348 128206156 128206313 4.950000e-70 276.0
32 TraesCS4B01G084400 chr3B 98.065 155 3 0 2192 2346 401077418 401077264 2.300000e-68 270.0
33 TraesCS4B01G084400 chr3B 97.452 157 4 0 2192 2348 592597648 592597804 8.280000e-68 268.0
34 TraesCS4B01G084400 chr3B 97.452 157 4 0 2192 2348 667039603 667039447 8.280000e-68 268.0
35 TraesCS4B01G084400 chr3B 78.392 199 37 5 2370 2566 790759949 790760143 1.900000e-24 124.0
36 TraesCS4B01G084400 chr3B 76.585 205 38 9 2374 2572 677856032 677855832 2.470000e-18 104.0
37 TraesCS4B01G084400 chr3B 100.000 29 0 0 2373 2401 592172076 592172048 3.000000e-03 54.7
38 TraesCS4B01G084400 chr6A 91.099 191 13 3 2187 2373 414869401 414869211 6.440000e-64 255.0
39 TraesCS4B01G084400 chr6D 92.086 139 11 0 2192 2330 295412759 295412621 3.960000e-46 196.0
40 TraesCS4B01G084400 chr5B 79.245 159 30 3 2393 2549 142662212 142662055 1.910000e-19 108.0
41 TraesCS4B01G084400 chr7D 76.684 193 38 6 2372 2561 106417665 106417853 3.200000e-17 100.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G084400 chr4B 82664440 82669455 5015 True 9263.000000 9263 100.00000 1 5016 1 chr4B.!!$R1 5015
1 TraesCS4B01G084400 chr4B 172355825 172356395 570 True 350.000000 350 78.26800 3096 3670 1 chr4B.!!$R2 574
2 TraesCS4B01G084400 chr4A 541337555 541341561 4006 False 1440.550000 3712 93.75200 825 4983 4 chr4A.!!$F2 4158
3 TraesCS4B01G084400 chr4D 55580964 55584964 4000 True 1403.100000 3040 95.45775 845 4746 4 chr4D.!!$R5 3901
4 TraesCS4B01G084400 chr7B 71579715 71583081 3366 True 1240.333333 1253 96.41700 1 758 3 chr7B.!!$R2 757
5 TraesCS4B01G084400 chr3A 579035702 579036450 748 True 1251.000000 1251 96.80000 1 750 1 chr3A.!!$R1 749
6 TraesCS4B01G084400 chr1A 6652341 6653089 748 False 1206.000000 1206 95.73300 1 750 1 chr1A.!!$F1 749
7 TraesCS4B01G084400 chr1A 531595222 531595972 750 True 1201.000000 1201 95.48500 1 753 1 chr1A.!!$R1 752
8 TraesCS4B01G084400 chrUn 3248006 3248755 749 True 1188.000000 1188 95.21900 1 752 1 chrUn.!!$R1 751
9 TraesCS4B01G084400 chr7A 329169239 329169991 752 False 1158.000000 1158 94.43000 1 753 1 chr7A.!!$F1 752
10 TraesCS4B01G084400 chr5A 619418957 619419706 749 False 1094.000000 1094 92.96100 1 752 1 chr5A.!!$F1 751

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
781 3395 0.034896 AGTAGTGCCCCAACGACAAG 59.965 55.0 0.00 0.0 0.00 3.16 F
782 3396 0.250166 GTAGTGCCCCAACGACAAGT 60.250 55.0 0.00 0.0 0.00 3.16 F
1664 4294 0.250513 GGATCGAACTCTGCCCAAGT 59.749 55.0 0.00 0.0 0.00 3.16 F
2230 4923 0.034896 ACTGGTAACTGCTCGGTTGG 59.965 55.0 4.45 0.0 39.52 3.77 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2211 4904 0.034896 CCAACCGAGCAGTTACCAGT 59.965 55.0 0.00 0.00 0.00 4.00 R
2227 4920 0.105658 ATCCCCTACTCGCTAGCCAA 60.106 55.0 9.66 0.00 0.00 4.52 R
3451 6507 1.022735 ATACGCTGACCACCTCTACG 58.977 55.0 0.00 0.00 0.00 3.51 R
4180 7245 0.449388 GAAACTGATCTTGGCGGCAG 59.551 55.0 12.87 6.93 34.65 4.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
156 157 1.835693 GGAAGGAGAGGGCCATGAG 59.164 63.158 6.18 0.00 0.00 2.90
227 1533 2.299297 GAGGAGAACGGAGAGGAAACAA 59.701 50.000 0.00 0.00 0.00 2.83
322 2934 4.284550 GGGTGGTGGCTCTGGCAA 62.285 66.667 0.00 0.00 40.46 4.52
581 3195 6.748658 TGTCGTTCGATTCAGTTAATAACGAT 59.251 34.615 10.11 0.00 44.29 3.73
740 3354 4.398358 CGACCTACCAACTGAGACATTAGA 59.602 45.833 0.00 0.00 0.00 2.10
769 3383 7.213678 AGAGATAAGCATTTTCCTAGTAGTGC 58.786 38.462 2.30 2.30 0.00 4.40
770 3384 6.292150 AGATAAGCATTTTCCTAGTAGTGCC 58.708 40.000 6.18 0.00 33.29 5.01
771 3385 3.283259 AGCATTTTCCTAGTAGTGCCC 57.717 47.619 6.18 0.00 33.29 5.36
772 3386 2.092375 AGCATTTTCCTAGTAGTGCCCC 60.092 50.000 6.18 0.00 33.29 5.80
773 3387 2.356741 GCATTTTCCTAGTAGTGCCCCA 60.357 50.000 0.00 0.00 0.00 4.96
774 3388 3.876156 GCATTTTCCTAGTAGTGCCCCAA 60.876 47.826 0.00 0.00 0.00 4.12
775 3389 3.428413 TTTTCCTAGTAGTGCCCCAAC 57.572 47.619 0.00 0.00 0.00 3.77
776 3390 0.899720 TTCCTAGTAGTGCCCCAACG 59.100 55.000 0.00 0.00 0.00 4.10
777 3391 0.040058 TCCTAGTAGTGCCCCAACGA 59.960 55.000 0.00 0.00 0.00 3.85
778 3392 0.175073 CCTAGTAGTGCCCCAACGAC 59.825 60.000 0.00 0.00 0.00 4.34
779 3393 0.892755 CTAGTAGTGCCCCAACGACA 59.107 55.000 0.00 0.00 0.00 4.35
780 3394 1.274167 CTAGTAGTGCCCCAACGACAA 59.726 52.381 0.00 0.00 0.00 3.18
781 3395 0.034896 AGTAGTGCCCCAACGACAAG 59.965 55.000 0.00 0.00 0.00 3.16
782 3396 0.250166 GTAGTGCCCCAACGACAAGT 60.250 55.000 0.00 0.00 0.00 3.16
783 3397 1.001181 GTAGTGCCCCAACGACAAGTA 59.999 52.381 0.00 0.00 0.00 2.24
784 3398 0.690762 AGTGCCCCAACGACAAGTAT 59.309 50.000 0.00 0.00 0.00 2.12
785 3399 1.073284 AGTGCCCCAACGACAAGTATT 59.927 47.619 0.00 0.00 0.00 1.89
786 3400 2.303600 AGTGCCCCAACGACAAGTATTA 59.696 45.455 0.00 0.00 0.00 0.98
787 3401 3.054655 AGTGCCCCAACGACAAGTATTAT 60.055 43.478 0.00 0.00 0.00 1.28
788 3402 3.064820 GTGCCCCAACGACAAGTATTATG 59.935 47.826 0.00 0.00 0.00 1.90
789 3403 3.055021 TGCCCCAACGACAAGTATTATGA 60.055 43.478 0.00 0.00 0.00 2.15
790 3404 4.134563 GCCCCAACGACAAGTATTATGAT 58.865 43.478 0.00 0.00 0.00 2.45
791 3405 4.024048 GCCCCAACGACAAGTATTATGATG 60.024 45.833 0.00 0.00 0.00 3.07
792 3406 4.024048 CCCCAACGACAAGTATTATGATGC 60.024 45.833 0.00 0.00 0.00 3.91
793 3407 4.024048 CCCAACGACAAGTATTATGATGCC 60.024 45.833 0.00 0.00 0.00 4.40
794 3408 4.318760 CCAACGACAAGTATTATGATGCCG 60.319 45.833 0.00 0.00 0.00 5.69
795 3409 4.316205 ACGACAAGTATTATGATGCCGA 57.684 40.909 0.00 0.00 0.00 5.54
796 3410 4.299155 ACGACAAGTATTATGATGCCGAG 58.701 43.478 0.00 0.00 0.00 4.63
797 3411 3.675225 CGACAAGTATTATGATGCCGAGG 59.325 47.826 0.00 0.00 0.00 4.63
798 3412 4.632153 GACAAGTATTATGATGCCGAGGT 58.368 43.478 0.00 0.00 0.00 3.85
799 3413 5.564063 CGACAAGTATTATGATGCCGAGGTA 60.564 44.000 0.00 0.00 0.00 3.08
800 3414 5.784177 ACAAGTATTATGATGCCGAGGTAG 58.216 41.667 0.00 0.00 0.00 3.18
801 3415 5.304614 ACAAGTATTATGATGCCGAGGTAGT 59.695 40.000 0.00 0.00 0.00 2.73
802 3416 6.492429 ACAAGTATTATGATGCCGAGGTAGTA 59.508 38.462 0.00 0.00 0.00 1.82
803 3417 7.014905 ACAAGTATTATGATGCCGAGGTAGTAA 59.985 37.037 0.00 0.00 0.00 2.24
804 3418 6.921914 AGTATTATGATGCCGAGGTAGTAAC 58.078 40.000 0.00 0.00 0.00 2.50
805 3419 5.801531 ATTATGATGCCGAGGTAGTAACA 57.198 39.130 0.00 0.00 0.00 2.41
806 3420 5.801531 TTATGATGCCGAGGTAGTAACAT 57.198 39.130 0.00 0.00 0.00 2.71
807 3421 6.904463 TTATGATGCCGAGGTAGTAACATA 57.096 37.500 0.00 0.00 0.00 2.29
808 3422 5.801531 ATGATGCCGAGGTAGTAACATAA 57.198 39.130 0.00 0.00 0.00 1.90
809 3423 5.196341 TGATGCCGAGGTAGTAACATAAG 57.804 43.478 0.00 0.00 0.00 1.73
810 3424 3.447918 TGCCGAGGTAGTAACATAAGC 57.552 47.619 0.00 0.00 0.00 3.09
811 3425 3.028850 TGCCGAGGTAGTAACATAAGCT 58.971 45.455 0.00 0.00 0.00 3.74
812 3426 3.449737 TGCCGAGGTAGTAACATAAGCTT 59.550 43.478 3.48 3.48 0.00 3.74
813 3427 4.081309 TGCCGAGGTAGTAACATAAGCTTT 60.081 41.667 3.20 0.00 0.00 3.51
814 3428 4.874396 GCCGAGGTAGTAACATAAGCTTTT 59.126 41.667 3.20 0.00 0.00 2.27
815 3429 5.220605 GCCGAGGTAGTAACATAAGCTTTTG 60.221 44.000 14.46 14.46 0.00 2.44
816 3430 6.103997 CCGAGGTAGTAACATAAGCTTTTGA 58.896 40.000 21.69 0.00 0.00 2.69
817 3431 6.761714 CCGAGGTAGTAACATAAGCTTTTGAT 59.238 38.462 21.69 13.39 0.00 2.57
818 3432 7.280205 CCGAGGTAGTAACATAAGCTTTTGATT 59.720 37.037 21.69 14.19 0.00 2.57
819 3433 8.328864 CGAGGTAGTAACATAAGCTTTTGATTC 58.671 37.037 21.69 9.30 0.00 2.52
820 3434 9.384764 GAGGTAGTAACATAAGCTTTTGATTCT 57.615 33.333 21.69 15.25 0.00 2.40
821 3435 9.167311 AGGTAGTAACATAAGCTTTTGATTCTG 57.833 33.333 21.69 4.24 0.00 3.02
822 3436 9.162764 GGTAGTAACATAAGCTTTTGATTCTGA 57.837 33.333 21.69 2.00 0.00 3.27
873 3487 9.970553 TTAGATGACGTGTCCCTATTATATACT 57.029 33.333 0.00 0.00 0.00 2.12
874 3488 8.282455 AGATGACGTGTCCCTATTATATACTG 57.718 38.462 0.00 0.00 0.00 2.74
881 3495 5.362717 TGTCCCTATTATATACTGATGCGGG 59.637 44.000 0.00 0.00 0.00 6.13
956 3583 2.829384 GCACCCTCCACCCAAGTCA 61.829 63.158 0.00 0.00 0.00 3.41
1041 3668 1.984570 CGCCAACTCCCTCCTCTCA 60.985 63.158 0.00 0.00 0.00 3.27
1351 3978 2.432300 CCGGACGAATACTGGGGCT 61.432 63.158 0.00 0.00 0.00 5.19
1477 4104 1.955529 CTCGGATGGTTCGTGCGTTG 61.956 60.000 1.43 0.00 35.76 4.10
1482 4109 0.309612 ATGGTTCGTGCGTTGGTTTC 59.690 50.000 0.00 0.00 0.00 2.78
1499 4126 3.329814 GGTTTCCCTCTAAGGACCTTTCA 59.670 47.826 13.11 0.00 37.67 2.69
1511 4138 5.838531 AGGACCTTTCATCTTCGTAGTAG 57.161 43.478 0.00 0.00 0.00 2.57
1513 4140 6.421485 AGGACCTTTCATCTTCGTAGTAGTA 58.579 40.000 0.00 0.00 0.00 1.82
1549 4176 5.355071 TCTTGATTGATTTGTGATTCTCCCG 59.645 40.000 0.00 0.00 0.00 5.14
1558 4188 1.535462 GTGATTCTCCCGTGTTGTTGG 59.465 52.381 0.00 0.00 0.00 3.77
1664 4294 0.250513 GGATCGAACTCTGCCCAAGT 59.749 55.000 0.00 0.00 0.00 3.16
1881 4514 1.891919 TTGTCACTTGTCAGGCGGC 60.892 57.895 0.00 0.00 0.00 6.53
1891 4534 1.202639 TGTCAGGCGGCCACTATTATG 60.203 52.381 23.09 8.86 0.00 1.90
1892 4535 0.396435 TCAGGCGGCCACTATTATGG 59.604 55.000 23.09 0.00 43.26 2.74
1893 4536 0.606401 CAGGCGGCCACTATTATGGG 60.606 60.000 23.09 0.00 40.43 4.00
1936 4579 5.656416 TGTATTTGGGAATCATGGAAGTTCC 59.344 40.000 15.50 15.50 40.50 3.62
1957 4610 1.602323 GTGACACGCCATTGGGGAA 60.602 57.895 25.08 6.03 40.01 3.97
1992 4674 3.065095 CCTTTTGTTGTGTTGGCATTTGG 59.935 43.478 0.00 0.00 0.00 3.28
2003 4685 4.586421 TGTTGGCATTTGGTTGTCTAATCA 59.414 37.500 0.00 0.00 0.00 2.57
2015 4697 5.107453 GGTTGTCTAATCAACGTCTCACAAG 60.107 44.000 0.00 0.00 45.75 3.16
2044 4726 3.969287 ACTCTGTGCTTATCTGCTTGA 57.031 42.857 0.00 0.00 0.00 3.02
2077 4759 4.040952 TCTCTTCTTTGTGGAGCTAAGCTT 59.959 41.667 3.48 3.48 39.88 3.74
2078 4760 5.246203 TCTCTTCTTTGTGGAGCTAAGCTTA 59.754 40.000 5.94 5.94 39.88 3.09
2079 4761 5.238583 TCTTCTTTGTGGAGCTAAGCTTAC 58.761 41.667 0.86 0.10 39.88 2.34
2080 4762 3.939066 TCTTTGTGGAGCTAAGCTTACC 58.061 45.455 0.86 3.30 39.88 2.85
2081 4763 3.326588 TCTTTGTGGAGCTAAGCTTACCA 59.673 43.478 9.63 9.63 39.88 3.25
2082 4764 3.780804 TTGTGGAGCTAAGCTTACCAA 57.219 42.857 14.14 4.79 39.88 3.67
2083 4765 3.334583 TGTGGAGCTAAGCTTACCAAG 57.665 47.619 14.14 3.04 39.88 3.61
2127 4820 8.789762 ACTTAATAACAGGTTAATGTGTCAACC 58.210 33.333 0.00 0.00 43.82 3.77
2136 4829 1.896220 ATGTGTCAACCGCATGTTCT 58.104 45.000 0.00 0.00 42.63 3.01
2160 4853 7.063898 TCTCATGTTCGTTCTTCATCTGAATTC 59.936 37.037 0.00 0.00 33.01 2.17
2185 4878 9.672086 TCTGTTAAAACTAAAAATGGTGAATCG 57.328 29.630 0.00 0.00 0.00 3.34
2186 4879 9.458374 CTGTTAAAACTAAAAATGGTGAATCGT 57.542 29.630 0.00 0.00 0.00 3.73
2187 4880 9.804758 TGTTAAAACTAAAAATGGTGAATCGTT 57.195 25.926 0.00 0.00 0.00 3.85
2192 4885 8.934507 AACTAAAAATGGTGAATCGTTTTTCA 57.065 26.923 9.02 0.00 41.85 2.69
2193 4886 9.541143 AACTAAAAATGGTGAATCGTTTTTCAT 57.459 25.926 9.02 0.00 41.85 2.57
2194 4887 9.541143 ACTAAAAATGGTGAATCGTTTTTCATT 57.459 25.926 9.02 0.00 41.85 2.57
2195 4888 9.796062 CTAAAAATGGTGAATCGTTTTTCATTG 57.204 29.630 9.02 0.00 41.85 2.82
2196 4889 7.784633 AAAATGGTGAATCGTTTTTCATTGT 57.215 28.000 0.00 0.00 37.88 2.71
2197 4890 7.784633 AAATGGTGAATCGTTTTTCATTGTT 57.215 28.000 0.00 0.00 37.88 2.83
2198 4891 6.768029 ATGGTGAATCGTTTTTCATTGTTG 57.232 33.333 2.53 0.00 37.88 3.33
2199 4892 5.895928 TGGTGAATCGTTTTTCATTGTTGA 58.104 33.333 2.53 0.00 37.88 3.18
2200 4893 5.976534 TGGTGAATCGTTTTTCATTGTTGAG 59.023 36.000 2.53 0.00 37.88 3.02
2201 4894 5.402270 GGTGAATCGTTTTTCATTGTTGAGG 59.598 40.000 2.53 0.00 37.88 3.86
2202 4895 6.205784 GTGAATCGTTTTTCATTGTTGAGGA 58.794 36.000 2.53 0.00 37.88 3.71
2203 4896 6.695278 GTGAATCGTTTTTCATTGTTGAGGAA 59.305 34.615 2.53 0.00 37.88 3.36
2204 4897 7.221838 GTGAATCGTTTTTCATTGTTGAGGAAA 59.778 33.333 2.53 0.00 37.88 3.13
2205 4898 7.925483 TGAATCGTTTTTCATTGTTGAGGAAAT 59.075 29.630 0.00 0.00 37.81 2.17
2206 4899 7.873739 ATCGTTTTTCATTGTTGAGGAAATC 57.126 32.000 0.00 0.00 37.81 2.17
2207 4900 5.912396 TCGTTTTTCATTGTTGAGGAAATCG 59.088 36.000 0.00 0.00 37.81 3.34
2208 4901 5.685511 CGTTTTTCATTGTTGAGGAAATCGT 59.314 36.000 0.00 0.00 37.81 3.73
2209 4902 6.198216 CGTTTTTCATTGTTGAGGAAATCGTT 59.802 34.615 0.00 0.00 37.81 3.85
2210 4903 7.377397 CGTTTTTCATTGTTGAGGAAATCGTTA 59.623 33.333 0.00 0.00 37.81 3.18
2211 4904 9.026074 GTTTTTCATTGTTGAGGAAATCGTTAA 57.974 29.630 0.00 0.00 37.81 2.01
2212 4905 8.568732 TTTTCATTGTTGAGGAAATCGTTAAC 57.431 30.769 0.00 0.00 37.81 2.01
2213 4906 7.504924 TTCATTGTTGAGGAAATCGTTAACT 57.495 32.000 3.71 0.00 33.31 2.24
2214 4907 6.898041 TCATTGTTGAGGAAATCGTTAACTG 58.102 36.000 3.71 0.00 33.31 3.16
2215 4908 5.682943 TTGTTGAGGAAATCGTTAACTGG 57.317 39.130 3.71 0.00 33.31 4.00
2216 4909 4.710324 TGTTGAGGAAATCGTTAACTGGT 58.290 39.130 3.71 0.00 33.31 4.00
2217 4910 5.856156 TGTTGAGGAAATCGTTAACTGGTA 58.144 37.500 3.71 0.00 33.31 3.25
2218 4911 6.289834 TGTTGAGGAAATCGTTAACTGGTAA 58.710 36.000 3.71 0.00 33.31 2.85
2219 4912 6.203338 TGTTGAGGAAATCGTTAACTGGTAAC 59.797 38.462 5.52 5.52 39.05 2.50
2220 4913 6.105397 TGAGGAAATCGTTAACTGGTAACT 57.895 37.500 13.27 0.00 40.10 2.24
2221 4914 5.929992 TGAGGAAATCGTTAACTGGTAACTG 59.070 40.000 13.27 7.40 40.10 3.16
2222 4915 4.694037 AGGAAATCGTTAACTGGTAACTGC 59.306 41.667 13.27 0.69 40.10 4.40
2223 4916 4.694037 GGAAATCGTTAACTGGTAACTGCT 59.306 41.667 13.27 0.00 40.10 4.24
2224 4917 5.163884 GGAAATCGTTAACTGGTAACTGCTC 60.164 44.000 13.27 5.09 40.10 4.26
2225 4918 2.937591 TCGTTAACTGGTAACTGCTCG 58.062 47.619 13.27 0.58 40.10 5.03
2226 4919 1.990563 CGTTAACTGGTAACTGCTCGG 59.009 52.381 13.27 0.00 40.10 4.63
2227 4920 2.608752 CGTTAACTGGTAACTGCTCGGT 60.609 50.000 13.27 0.00 40.10 4.69
2228 4921 3.396560 GTTAACTGGTAACTGCTCGGTT 58.603 45.455 8.32 0.00 39.30 4.44
2229 4922 1.878953 AACTGGTAACTGCTCGGTTG 58.121 50.000 4.45 0.00 39.52 3.77
2230 4923 0.034896 ACTGGTAACTGCTCGGTTGG 59.965 55.000 4.45 0.00 39.52 3.77
2231 4924 1.298859 CTGGTAACTGCTCGGTTGGC 61.299 60.000 4.45 0.00 37.61 4.52
2232 4925 1.003718 GGTAACTGCTCGGTTGGCT 60.004 57.895 4.45 0.00 0.00 4.75
2233 4926 0.248289 GGTAACTGCTCGGTTGGCTA 59.752 55.000 4.45 0.00 0.00 3.93
2234 4927 1.641577 GTAACTGCTCGGTTGGCTAG 58.358 55.000 4.45 0.00 0.00 3.42
2235 4928 0.108329 TAACTGCTCGGTTGGCTAGC 60.108 55.000 6.04 6.04 36.77 3.42
2243 4936 1.442148 GGTTGGCTAGCGAGTAGGG 59.558 63.158 9.00 0.00 0.00 3.53
2244 4937 1.442148 GTTGGCTAGCGAGTAGGGG 59.558 63.158 9.00 0.00 0.00 4.79
2245 4938 1.041447 GTTGGCTAGCGAGTAGGGGA 61.041 60.000 9.00 0.00 0.00 4.81
2246 4939 0.105658 TTGGCTAGCGAGTAGGGGAT 60.106 55.000 9.00 0.00 0.00 3.85
2247 4940 0.105658 TGGCTAGCGAGTAGGGGATT 60.106 55.000 9.00 0.00 0.00 3.01
2248 4941 1.146359 TGGCTAGCGAGTAGGGGATTA 59.854 52.381 9.00 0.00 0.00 1.75
2249 4942 2.245582 GGCTAGCGAGTAGGGGATTAA 58.754 52.381 9.00 0.00 0.00 1.40
2250 4943 2.832733 GGCTAGCGAGTAGGGGATTAAT 59.167 50.000 9.00 0.00 0.00 1.40
2251 4944 4.021916 GGCTAGCGAGTAGGGGATTAATA 58.978 47.826 9.00 0.00 0.00 0.98
2252 4945 4.098196 GGCTAGCGAGTAGGGGATTAATAG 59.902 50.000 9.00 0.00 0.00 1.73
2253 4946 4.098196 GCTAGCGAGTAGGGGATTAATAGG 59.902 50.000 0.00 0.00 0.00 2.57
2254 4947 2.832733 AGCGAGTAGGGGATTAATAGGC 59.167 50.000 0.00 0.00 0.00 3.93
2255 4948 2.832733 GCGAGTAGGGGATTAATAGGCT 59.167 50.000 0.00 0.00 0.00 4.58
2256 4949 4.021916 GCGAGTAGGGGATTAATAGGCTA 58.978 47.826 0.00 0.00 0.00 3.93
2257 4950 4.465305 GCGAGTAGGGGATTAATAGGCTAA 59.535 45.833 0.00 0.00 0.00 3.09
2258 4951 5.128991 GCGAGTAGGGGATTAATAGGCTAAT 59.871 44.000 0.00 0.00 0.00 1.73
2259 4952 6.683360 GCGAGTAGGGGATTAATAGGCTAATC 60.683 46.154 0.00 0.00 37.50 1.75
2260 4953 6.459848 CGAGTAGGGGATTAATAGGCTAATCG 60.460 46.154 0.00 0.00 38.61 3.34
2261 4954 6.262207 AGTAGGGGATTAATAGGCTAATCGT 58.738 40.000 0.00 0.00 38.61 3.73
2262 4955 5.678955 AGGGGATTAATAGGCTAATCGTC 57.321 43.478 0.00 0.00 38.61 4.20
2263 4956 5.091552 AGGGGATTAATAGGCTAATCGTCA 58.908 41.667 0.00 0.00 38.61 4.35
2264 4957 5.546499 AGGGGATTAATAGGCTAATCGTCAA 59.454 40.000 0.00 0.00 38.61 3.18
2265 4958 5.875359 GGGGATTAATAGGCTAATCGTCAAG 59.125 44.000 0.00 0.00 38.61 3.02
2266 4959 6.465084 GGGATTAATAGGCTAATCGTCAAGT 58.535 40.000 0.00 0.00 38.61 3.16
2267 4960 6.935208 GGGATTAATAGGCTAATCGTCAAGTT 59.065 38.462 0.00 0.00 38.61 2.66
2268 4961 8.092687 GGGATTAATAGGCTAATCGTCAAGTTA 58.907 37.037 0.00 0.00 38.61 2.24
2269 4962 9.485206 GGATTAATAGGCTAATCGTCAAGTTAA 57.515 33.333 0.00 0.00 38.61 2.01
2272 4965 7.639162 AATAGGCTAATCGTCAAGTTAATCG 57.361 36.000 0.00 0.00 0.00 3.34
2273 4966 5.258456 AGGCTAATCGTCAAGTTAATCGA 57.742 39.130 0.00 0.00 36.77 3.59
2274 4967 5.041940 AGGCTAATCGTCAAGTTAATCGAC 58.958 41.667 0.00 0.00 35.24 4.20
2275 4968 4.208666 GGCTAATCGTCAAGTTAATCGACC 59.791 45.833 0.00 0.00 35.24 4.79
2276 4969 4.802039 GCTAATCGTCAAGTTAATCGACCA 59.198 41.667 0.00 0.00 35.24 4.02
2277 4970 5.462398 GCTAATCGTCAAGTTAATCGACCAT 59.538 40.000 0.00 0.00 35.24 3.55
2278 4971 6.018994 GCTAATCGTCAAGTTAATCGACCATT 60.019 38.462 0.00 0.00 35.24 3.16
2279 4972 6.737254 AATCGTCAAGTTAATCGACCATTT 57.263 33.333 0.00 0.00 35.24 2.32
2280 4973 7.837202 AATCGTCAAGTTAATCGACCATTTA 57.163 32.000 0.00 0.00 35.24 1.40
2281 4974 7.837202 ATCGTCAAGTTAATCGACCATTTAA 57.163 32.000 0.00 0.00 35.24 1.52
2282 4975 7.837202 TCGTCAAGTTAATCGACCATTTAAT 57.163 32.000 0.00 0.00 0.00 1.40
2283 4976 7.902032 TCGTCAAGTTAATCGACCATTTAATC 58.098 34.615 0.00 0.00 0.00 1.75
2284 4977 7.546316 TCGTCAAGTTAATCGACCATTTAATCA 59.454 33.333 0.00 0.00 0.00 2.57
2285 4978 8.172484 CGTCAAGTTAATCGACCATTTAATCAA 58.828 33.333 0.00 0.00 0.00 2.57
2294 4987 8.615878 ATCGACCATTTAATCAATTAATCGGA 57.384 30.769 13.53 0.00 34.43 4.55
2295 4988 7.857569 TCGACCATTTAATCAATTAATCGGAC 58.142 34.615 13.53 8.91 34.43 4.79
2296 4989 6.790350 CGACCATTTAATCAATTAATCGGACG 59.210 38.462 13.53 14.08 36.66 4.79
2297 4990 7.306925 CGACCATTTAATCAATTAATCGGACGA 60.307 37.037 19.00 0.00 40.27 4.20
2298 4991 8.391075 ACCATTTAATCAATTAATCGGACGAT 57.609 30.769 0.65 0.65 32.78 3.73
2299 4992 8.846211 ACCATTTAATCAATTAATCGGACGATT 58.154 29.630 21.60 21.60 45.58 3.34
2300 4993 9.677567 CCATTTAATCAATTAATCGGACGATTT 57.322 29.630 22.82 5.63 41.55 2.17
2307 5000 8.846211 ATCAATTAATCGGACGATTTATTGGTT 58.154 29.630 34.11 26.16 45.02 3.67
2308 5001 8.850454 CAATTAATCGGACGATTTATTGGTTT 57.150 30.769 31.09 13.54 46.56 3.27
2309 5002 9.938670 CAATTAATCGGACGATTTATTGGTTTA 57.061 29.630 31.09 11.69 46.56 2.01
2312 5005 5.893512 TCGGACGATTTATTGGTTTATCG 57.106 39.130 0.00 0.00 43.92 2.92
2313 5006 4.746115 TCGGACGATTTATTGGTTTATCGG 59.254 41.667 0.00 0.00 42.95 4.18
2314 5007 4.609783 CGGACGATTTATTGGTTTATCGGC 60.610 45.833 0.00 0.00 45.39 5.54
2315 5008 4.514066 GGACGATTTATTGGTTTATCGGCT 59.486 41.667 8.81 0.00 45.42 5.52
2316 5009 5.697633 GGACGATTTATTGGTTTATCGGCTA 59.302 40.000 8.81 0.00 45.42 3.93
2317 5010 6.347160 GGACGATTTATTGGTTTATCGGCTAC 60.347 42.308 8.81 0.00 45.42 3.58
2318 5011 6.285990 ACGATTTATTGGTTTATCGGCTACT 58.714 36.000 0.00 0.00 42.95 2.57
2319 5012 6.423001 ACGATTTATTGGTTTATCGGCTACTC 59.577 38.462 0.00 0.00 42.95 2.59
2320 5013 6.399669 CGATTTATTGGTTTATCGGCTACTCG 60.400 42.308 0.00 0.00 36.99 4.18
2321 5014 2.589798 TTGGTTTATCGGCTACTCGG 57.410 50.000 0.00 0.00 0.00 4.63
2322 5015 1.477553 TGGTTTATCGGCTACTCGGT 58.522 50.000 0.00 0.00 0.00 4.69
2323 5016 1.135527 TGGTTTATCGGCTACTCGGTG 59.864 52.381 0.00 0.00 0.00 4.94
2324 5017 1.406539 GGTTTATCGGCTACTCGGTGA 59.593 52.381 0.00 0.00 0.00 4.02
2325 5018 2.457970 GTTTATCGGCTACTCGGTGAC 58.542 52.381 0.00 0.00 0.00 3.67
2326 5019 1.027357 TTATCGGCTACTCGGTGACC 58.973 55.000 0.00 0.00 0.00 4.02
2327 5020 0.820891 TATCGGCTACTCGGTGACCC 60.821 60.000 0.00 0.00 0.00 4.46
2328 5021 2.569218 ATCGGCTACTCGGTGACCCT 62.569 60.000 0.00 0.00 0.00 4.34
2329 5022 1.452651 CGGCTACTCGGTGACCCTA 60.453 63.158 0.00 0.00 0.00 3.53
2330 5023 1.445716 CGGCTACTCGGTGACCCTAG 61.446 65.000 0.00 0.00 0.00 3.02
2331 5024 1.108132 GGCTACTCGGTGACCCTAGG 61.108 65.000 0.06 0.06 0.00 3.02
2332 5025 0.106819 GCTACTCGGTGACCCTAGGA 60.107 60.000 11.48 0.00 0.00 2.94
2333 5026 1.970092 CTACTCGGTGACCCTAGGAG 58.030 60.000 11.48 2.69 28.70 3.69
2334 5027 1.212441 CTACTCGGTGACCCTAGGAGT 59.788 57.143 11.48 13.18 40.72 3.85
2335 5028 1.293062 ACTCGGTGACCCTAGGAGTA 58.707 55.000 11.48 0.00 36.28 2.59
2336 5029 1.212441 ACTCGGTGACCCTAGGAGTAG 59.788 57.143 11.48 3.27 36.28 2.57
2337 5030 0.549950 TCGGTGACCCTAGGAGTAGG 59.450 60.000 11.48 0.00 45.25 3.18
2347 5040 3.163467 CCTAGGAGTAGGGGTTAATCGG 58.837 54.545 1.05 0.00 42.25 4.18
2348 5041 3.181425 CCTAGGAGTAGGGGTTAATCGGA 60.181 52.174 1.05 0.00 42.25 4.55
2349 5042 2.675583 AGGAGTAGGGGTTAATCGGAC 58.324 52.381 0.00 0.00 0.00 4.79
2350 5043 1.339291 GGAGTAGGGGTTAATCGGACG 59.661 57.143 0.00 0.00 0.00 4.79
2351 5044 2.301346 GAGTAGGGGTTAATCGGACGA 58.699 52.381 0.00 0.00 0.00 4.20
2352 5045 2.689983 GAGTAGGGGTTAATCGGACGAA 59.310 50.000 0.00 0.00 0.00 3.85
2353 5046 3.303049 AGTAGGGGTTAATCGGACGAAT 58.697 45.455 0.00 0.00 0.00 3.34
2354 5047 3.708121 AGTAGGGGTTAATCGGACGAATT 59.292 43.478 0.00 0.00 0.00 2.17
2355 5048 3.189618 AGGGGTTAATCGGACGAATTC 57.810 47.619 0.00 0.00 0.00 2.17
2356 5049 2.770232 AGGGGTTAATCGGACGAATTCT 59.230 45.455 3.52 0.00 0.00 2.40
2357 5050 3.199289 AGGGGTTAATCGGACGAATTCTT 59.801 43.478 3.52 0.00 0.00 2.52
2358 5051 3.311596 GGGGTTAATCGGACGAATTCTTG 59.688 47.826 3.52 0.00 0.00 3.02
2359 5052 4.186159 GGGTTAATCGGACGAATTCTTGA 58.814 43.478 3.52 0.00 0.00 3.02
2360 5053 4.632688 GGGTTAATCGGACGAATTCTTGAA 59.367 41.667 3.52 0.00 0.00 2.69
2361 5054 5.446875 GGGTTAATCGGACGAATTCTTGAAC 60.447 44.000 3.52 0.00 0.00 3.18
2362 5055 5.121142 GGTTAATCGGACGAATTCTTGAACA 59.879 40.000 3.52 0.00 0.00 3.18
2363 5056 4.928661 AATCGGACGAATTCTTGAACAG 57.071 40.909 3.52 0.00 0.00 3.16
2364 5057 2.683968 TCGGACGAATTCTTGAACAGG 58.316 47.619 3.52 0.00 0.00 4.00
2365 5058 2.036733 TCGGACGAATTCTTGAACAGGT 59.963 45.455 3.52 0.00 0.00 4.00
2401 5094 3.967856 ACCCCCTCTGTCCCATAATATT 58.032 45.455 0.00 0.00 0.00 1.28
2415 5108 1.838913 AATATTGCGCGCATTGGTTC 58.161 45.000 36.83 0.97 0.00 3.62
2422 5115 1.529826 GCGCGCATTGGTTCTCTTAAG 60.530 52.381 29.10 0.00 0.00 1.85
2423 5116 1.999735 CGCGCATTGGTTCTCTTAAGA 59.000 47.619 8.75 4.81 0.00 2.10
2424 5117 2.029728 CGCGCATTGGTTCTCTTAAGAG 59.970 50.000 24.10 24.10 43.36 2.85
2425 5118 3.003480 GCGCATTGGTTCTCTTAAGAGT 58.997 45.455 27.59 8.56 42.60 3.24
2426 5119 3.062774 GCGCATTGGTTCTCTTAAGAGTC 59.937 47.826 27.59 21.24 42.60 3.36
2438 5133 9.439537 GTTCTCTTAAGAGTCAATTTCACAAAC 57.560 33.333 27.59 17.19 42.60 2.93
2440 5135 9.396022 TCTCTTAAGAGTCAATTTCACAAACTT 57.604 29.630 27.59 0.00 42.60 2.66
2740 5780 5.246429 AGGTTCAGTTCGGAGTCTCTAAATT 59.754 40.000 0.00 0.00 0.00 1.82
2812 5853 9.631452 CAGATGCATTCGAGTTTATCTATTCTA 57.369 33.333 0.00 0.00 0.00 2.10
2855 5896 9.452287 TTTCATTAAATGGTACTGGGTACTTAC 57.548 33.333 7.60 0.00 38.85 2.34
2992 6035 9.507329 AGACATCAAGTTAATATTGTGTCACTT 57.493 29.630 22.61 11.94 39.03 3.16
3143 6186 9.383519 GAACACTATCTTTTCATAATGAGACCA 57.616 33.333 0.00 0.00 0.00 4.02
3292 6335 5.897377 AGAAGTTGGTGGTATTACATTGC 57.103 39.130 0.00 0.00 0.00 3.56
3310 6353 2.509569 TGCTTTGGTGGCGAATTTCTA 58.490 42.857 0.00 0.00 0.00 2.10
3348 6393 4.338879 ACTGCACAGATTTTGGAAGCTAT 58.661 39.130 4.31 0.00 28.70 2.97
3379 6429 4.041049 TGTCACAAAATTCGCAACATCAC 58.959 39.130 0.00 0.00 0.00 3.06
3424 6480 3.006323 ACACAGTAGCTCTGACTTTCAGG 59.994 47.826 16.81 0.00 44.39 3.86
3482 6538 6.128117 GGTGGTCAGCGTATTAAAAGATCAAA 60.128 38.462 0.00 0.00 0.00 2.69
3509 6565 2.914097 GCAGGCCCACAGCTTTGT 60.914 61.111 0.00 0.00 43.05 2.83
3557 6613 2.604046 GATTCCTCTGGAAGCGCTAA 57.396 50.000 12.05 0.00 45.48 3.09
3653 6709 3.006537 GCCGGTATTAAGAGATGCCACTA 59.993 47.826 1.90 0.00 31.96 2.74
3679 6741 5.095145 TCTCACAATCAAGGATGGAAGAG 57.905 43.478 0.00 0.00 0.00 2.85
3725 6787 1.953559 TGCCACTGAGTTCTCACAAC 58.046 50.000 0.00 0.00 0.00 3.32
4014 7076 3.011821 AGTGACCTGGAGGAAGATGACTA 59.988 47.826 0.00 0.00 38.94 2.59
4020 7085 5.600484 ACCTGGAGGAAGATGACTAATGTAG 59.400 44.000 0.00 0.00 38.94 2.74
4021 7086 5.510520 CCTGGAGGAAGATGACTAATGTAGC 60.511 48.000 0.00 0.00 37.39 3.58
4022 7087 4.962362 TGGAGGAAGATGACTAATGTAGCA 59.038 41.667 0.00 0.00 0.00 3.49
4023 7088 5.163405 TGGAGGAAGATGACTAATGTAGCAC 60.163 44.000 0.00 0.00 0.00 4.40
4038 7103 2.238942 AGCACGATATCAATGGCGAA 57.761 45.000 3.12 0.00 0.00 4.70
4091 7156 7.988028 TGGTTTGAAACGATATGTATATGTGGA 59.012 33.333 1.53 0.00 0.00 4.02
4101 7166 4.497291 TGTATATGTGGACTTGGGTTCC 57.503 45.455 0.00 0.00 0.00 3.62
4156 7221 2.591753 GCCCACTGCAGCAGGATA 59.408 61.111 26.38 0.00 40.77 2.59
4180 7245 5.127031 AGTTCACCTTCTGCTCTTATCTCTC 59.873 44.000 0.00 0.00 0.00 3.20
4200 7265 0.960364 TGCCGCCAAGATCAGTTTCC 60.960 55.000 0.00 0.00 0.00 3.13
4202 7267 0.322456 CCGCCAAGATCAGTTTCCCA 60.322 55.000 0.00 0.00 0.00 4.37
4203 7268 1.533625 CGCCAAGATCAGTTTCCCAA 58.466 50.000 0.00 0.00 0.00 4.12
4216 7281 2.172930 GTTTCCCAATCTAGGTCTCCCC 59.827 54.545 0.00 0.00 0.00 4.81
4217 7282 0.267960 TCCCAATCTAGGTCTCCCCC 59.732 60.000 0.00 0.00 0.00 5.40
4358 7423 8.801882 TGGGAACTCGATTATTCTTATGTTTT 57.198 30.769 0.00 0.00 0.00 2.43
4434 7502 2.559668 CCTTGTCAAACATCCATGCAGT 59.440 45.455 0.00 0.00 0.00 4.40
4457 7525 4.057406 CCAAAATTTGGTCAAGTCTGCA 57.943 40.909 16.24 0.00 45.93 4.41
4478 7546 7.546316 TCTGCAATAACATGATGAATTTTGGTG 59.454 33.333 0.00 0.00 0.00 4.17
4509 7577 0.482446 AGCAGGGACCACATTTTCCA 59.518 50.000 0.00 0.00 33.01 3.53
4514 7582 0.244721 GGACCACATTTTCCAGCAGC 59.755 55.000 0.00 0.00 0.00 5.25
4538 7606 3.183373 GTCAGCGTCTTTCTCTTGTTCTG 59.817 47.826 0.00 0.00 0.00 3.02
4553 7621 4.829064 TGTTCTGTAGGTGACAAATTGC 57.171 40.909 0.00 0.00 37.70 3.56
4624 7692 4.199310 GGTGCAGCTTGATCCATAGTTTA 58.801 43.478 9.07 0.00 0.00 2.01
4654 7722 1.266718 GCGCTCAGTCCAATGTTGAAA 59.733 47.619 0.00 0.00 0.00 2.69
4655 7723 2.287547 GCGCTCAGTCCAATGTTGAAAA 60.288 45.455 0.00 0.00 0.00 2.29
4656 7724 3.558505 CGCTCAGTCCAATGTTGAAAAG 58.441 45.455 0.00 0.00 0.00 2.27
4657 7725 3.003689 CGCTCAGTCCAATGTTGAAAAGT 59.996 43.478 0.00 0.00 0.00 2.66
4659 7727 5.615544 CGCTCAGTCCAATGTTGAAAAGTAG 60.616 44.000 0.00 0.00 0.00 2.57
4661 7729 6.017109 GCTCAGTCCAATGTTGAAAAGTAGAA 60.017 38.462 0.00 0.00 0.00 2.10
4662 7730 7.468631 GCTCAGTCCAATGTTGAAAAGTAGAAA 60.469 37.037 0.00 0.00 0.00 2.52
4663 7731 7.703328 TCAGTCCAATGTTGAAAAGTAGAAAC 58.297 34.615 0.00 0.00 0.00 2.78
4664 7732 7.338196 TCAGTCCAATGTTGAAAAGTAGAAACA 59.662 33.333 0.00 0.00 36.98 2.83
4668 7736 9.883142 TCCAATGTTGAAAAGTAGAAACAAAAT 57.117 25.926 0.00 0.00 36.23 1.82
4689 7757 5.623956 ATTGATTTTGATGCATCATGGGT 57.376 34.783 29.13 15.67 36.56 4.51
4694 7762 7.566569 TGATTTTGATGCATCATGGGTAATTT 58.433 30.769 29.13 11.01 36.56 1.82
4783 7853 8.128582 TGTTCTGTTAGTGATGCAAGTTTAAAG 58.871 33.333 0.00 0.00 0.00 1.85
4790 7860 3.826157 TGATGCAAGTTTAAAGTCCAGGG 59.174 43.478 0.00 0.00 0.00 4.45
4791 7861 3.586470 TGCAAGTTTAAAGTCCAGGGA 57.414 42.857 0.00 0.00 0.00 4.20
4792 7862 4.112634 TGCAAGTTTAAAGTCCAGGGAT 57.887 40.909 0.00 0.00 0.00 3.85
4806 7881 2.035832 CCAGGGATGTTGTTTGTGTTCC 59.964 50.000 0.00 0.00 0.00 3.62
4833 7908 6.467047 CACTTCAGCTTACAATGCTAATTTCG 59.533 38.462 0.00 0.00 38.92 3.46
4838 7913 4.262976 GCTTACAATGCTAATTTCGCACAC 59.737 41.667 4.49 0.00 40.65 3.82
4839 7914 3.216147 ACAATGCTAATTTCGCACACC 57.784 42.857 4.49 0.00 40.65 4.16
4840 7915 2.819608 ACAATGCTAATTTCGCACACCT 59.180 40.909 4.49 0.00 40.65 4.00
4841 7916 3.173599 CAATGCTAATTTCGCACACCTG 58.826 45.455 4.49 0.00 40.65 4.00
4842 7917 1.164411 TGCTAATTTCGCACACCTGG 58.836 50.000 0.00 0.00 31.40 4.45
4843 7918 0.451783 GCTAATTTCGCACACCTGGG 59.548 55.000 0.00 0.00 0.00 4.45
4844 7919 1.821216 CTAATTTCGCACACCTGGGT 58.179 50.000 0.00 0.00 0.00 4.51
4849 7924 4.704833 CGCACACCTGGGTCTGGG 62.705 72.222 0.00 0.00 0.00 4.45
4863 7938 0.850100 TCTGGGTGGAAGCAAGGAAA 59.150 50.000 0.00 0.00 35.62 3.13
4873 7948 4.097892 TGGAAGCAAGGAAAGAAACAAGAC 59.902 41.667 0.00 0.00 0.00 3.01
4874 7949 3.971032 AGCAAGGAAAGAAACAAGACG 57.029 42.857 0.00 0.00 0.00 4.18
4921 7996 1.587946 CTTGTTGTTTTGGTCTTGCGC 59.412 47.619 0.00 0.00 0.00 6.09
4922 7997 0.179124 TGTTGTTTTGGTCTTGCGCC 60.179 50.000 4.18 0.00 0.00 6.53
4976 8051 1.742831 GTTGTGTTGGCTTGTCTGTCA 59.257 47.619 0.00 0.00 0.00 3.58
4977 8052 1.667236 TGTGTTGGCTTGTCTGTCAG 58.333 50.000 0.00 0.00 0.00 3.51
4980 8055 2.423538 GTGTTGGCTTGTCTGTCAGTTT 59.576 45.455 0.00 0.00 0.00 2.66
4981 8056 2.423185 TGTTGGCTTGTCTGTCAGTTTG 59.577 45.455 0.00 0.00 0.00 2.93
4982 8057 2.418368 TGGCTTGTCTGTCAGTTTGT 57.582 45.000 0.00 0.00 0.00 2.83
4983 8058 3.552132 TGGCTTGTCTGTCAGTTTGTA 57.448 42.857 0.00 0.00 0.00 2.41
4984 8059 3.202906 TGGCTTGTCTGTCAGTTTGTAC 58.797 45.455 0.00 0.00 0.00 2.90
4985 8060 3.118408 TGGCTTGTCTGTCAGTTTGTACT 60.118 43.478 0.00 0.00 34.00 2.73
5009 8084 4.188671 GGGATTTGACCCCTCCCT 57.811 61.111 0.00 0.00 44.49 4.20
5010 8085 2.410039 GGGATTTGACCCCTCCCTT 58.590 57.895 0.00 0.00 44.49 3.95
5011 8086 0.710588 GGGATTTGACCCCTCCCTTT 59.289 55.000 0.00 0.00 44.49 3.11
5012 8087 1.927371 GGGATTTGACCCCTCCCTTTA 59.073 52.381 0.00 0.00 44.49 1.85
5013 8088 2.518407 GGGATTTGACCCCTCCCTTTAT 59.482 50.000 0.00 0.00 44.49 1.40
5014 8089 3.052109 GGGATTTGACCCCTCCCTTTATT 60.052 47.826 0.00 0.00 44.49 1.40
5015 8090 4.215908 GGATTTGACCCCTCCCTTTATTC 58.784 47.826 0.00 0.00 0.00 1.75
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
175 1481 2.046314 CCCTTGTTCATCCGCGGT 60.046 61.111 27.15 10.00 0.00 5.68
227 1533 2.982130 CGCAACCTACCTGCCTCT 59.018 61.111 0.00 0.00 36.40 3.69
322 2934 0.033306 GGTTCCGTCTCCCTACCTCT 60.033 60.000 0.00 0.00 0.00 3.69
753 3367 3.644966 TGGGGCACTACTAGGAAAATG 57.355 47.619 0.00 0.00 0.00 2.32
754 3368 3.621461 CGTTGGGGCACTACTAGGAAAAT 60.621 47.826 0.00 0.00 0.00 1.82
757 3371 0.899720 CGTTGGGGCACTACTAGGAA 59.100 55.000 0.00 0.00 0.00 3.36
758 3372 0.040058 TCGTTGGGGCACTACTAGGA 59.960 55.000 0.00 0.00 0.00 2.94
759 3373 0.175073 GTCGTTGGGGCACTACTAGG 59.825 60.000 0.00 0.00 0.00 3.02
760 3374 0.892755 TGTCGTTGGGGCACTACTAG 59.107 55.000 0.00 0.00 0.00 2.57
761 3375 1.274167 CTTGTCGTTGGGGCACTACTA 59.726 52.381 0.00 0.00 0.00 1.82
762 3376 0.034896 CTTGTCGTTGGGGCACTACT 59.965 55.000 0.00 0.00 0.00 2.57
763 3377 0.250166 ACTTGTCGTTGGGGCACTAC 60.250 55.000 0.00 0.00 0.00 2.73
764 3378 1.340088 TACTTGTCGTTGGGGCACTA 58.660 50.000 0.00 0.00 0.00 2.74
765 3379 0.690762 ATACTTGTCGTTGGGGCACT 59.309 50.000 0.00 0.00 0.00 4.40
766 3380 1.530323 AATACTTGTCGTTGGGGCAC 58.470 50.000 0.00 0.00 0.00 5.01
767 3381 3.055021 TCATAATACTTGTCGTTGGGGCA 60.055 43.478 0.00 0.00 0.00 5.36
768 3382 3.537580 TCATAATACTTGTCGTTGGGGC 58.462 45.455 0.00 0.00 0.00 5.80
769 3383 4.024048 GCATCATAATACTTGTCGTTGGGG 60.024 45.833 0.00 0.00 0.00 4.96
770 3384 4.024048 GGCATCATAATACTTGTCGTTGGG 60.024 45.833 0.00 0.00 0.00 4.12
771 3385 4.318760 CGGCATCATAATACTTGTCGTTGG 60.319 45.833 0.00 0.00 32.88 3.77
772 3386 4.506288 TCGGCATCATAATACTTGTCGTTG 59.494 41.667 0.00 0.00 38.29 4.10
773 3387 4.689071 TCGGCATCATAATACTTGTCGTT 58.311 39.130 0.00 0.00 38.29 3.85
774 3388 4.299155 CTCGGCATCATAATACTTGTCGT 58.701 43.478 0.00 0.00 38.29 4.34
775 3389 3.675225 CCTCGGCATCATAATACTTGTCG 59.325 47.826 0.00 0.00 38.47 4.35
776 3390 4.632153 ACCTCGGCATCATAATACTTGTC 58.368 43.478 0.00 0.00 0.00 3.18
777 3391 4.689612 ACCTCGGCATCATAATACTTGT 57.310 40.909 0.00 0.00 0.00 3.16
778 3392 5.784177 ACTACCTCGGCATCATAATACTTG 58.216 41.667 0.00 0.00 0.00 3.16
779 3393 7.014905 TGTTACTACCTCGGCATCATAATACTT 59.985 37.037 0.00 0.00 0.00 2.24
780 3394 6.492429 TGTTACTACCTCGGCATCATAATACT 59.508 38.462 0.00 0.00 0.00 2.12
781 3395 6.684686 TGTTACTACCTCGGCATCATAATAC 58.315 40.000 0.00 0.00 0.00 1.89
782 3396 6.904463 TGTTACTACCTCGGCATCATAATA 57.096 37.500 0.00 0.00 0.00 0.98
783 3397 5.801531 TGTTACTACCTCGGCATCATAAT 57.198 39.130 0.00 0.00 0.00 1.28
784 3398 5.801531 ATGTTACTACCTCGGCATCATAA 57.198 39.130 0.00 0.00 0.00 1.90
785 3399 6.571731 GCTTATGTTACTACCTCGGCATCATA 60.572 42.308 0.00 0.00 0.00 2.15
786 3400 5.784177 CTTATGTTACTACCTCGGCATCAT 58.216 41.667 0.00 0.00 0.00 2.45
787 3401 4.500887 GCTTATGTTACTACCTCGGCATCA 60.501 45.833 0.00 0.00 0.00 3.07
788 3402 3.988517 GCTTATGTTACTACCTCGGCATC 59.011 47.826 0.00 0.00 0.00 3.91
789 3403 3.641906 AGCTTATGTTACTACCTCGGCAT 59.358 43.478 0.00 0.00 0.00 4.40
790 3404 3.028850 AGCTTATGTTACTACCTCGGCA 58.971 45.455 0.00 0.00 0.00 5.69
791 3405 3.729862 AGCTTATGTTACTACCTCGGC 57.270 47.619 0.00 0.00 0.00 5.54
792 3406 6.103997 TCAAAAGCTTATGTTACTACCTCGG 58.896 40.000 0.00 0.00 0.00 4.63
793 3407 7.772332 ATCAAAAGCTTATGTTACTACCTCG 57.228 36.000 0.00 0.00 0.00 4.63
794 3408 9.384764 AGAATCAAAAGCTTATGTTACTACCTC 57.615 33.333 0.00 0.00 0.00 3.85
795 3409 9.167311 CAGAATCAAAAGCTTATGTTACTACCT 57.833 33.333 0.00 0.00 0.00 3.08
796 3410 9.162764 TCAGAATCAAAAGCTTATGTTACTACC 57.837 33.333 0.00 0.00 0.00 3.18
830 3444 4.366159 AAAAACCAGGGGCACGTT 57.634 50.000 0.00 0.00 0.00 3.99
864 3478 4.202121 CGCCTACCCGCATCAGTATATAAT 60.202 45.833 0.00 0.00 0.00 1.28
865 3479 3.129813 CGCCTACCCGCATCAGTATATAA 59.870 47.826 0.00 0.00 0.00 0.98
866 3480 2.686405 CGCCTACCCGCATCAGTATATA 59.314 50.000 0.00 0.00 0.00 0.86
867 3481 1.476891 CGCCTACCCGCATCAGTATAT 59.523 52.381 0.00 0.00 0.00 0.86
868 3482 0.885879 CGCCTACCCGCATCAGTATA 59.114 55.000 0.00 0.00 0.00 1.47
869 3483 1.666011 CGCCTACCCGCATCAGTAT 59.334 57.895 0.00 0.00 0.00 2.12
870 3484 3.125607 CGCCTACCCGCATCAGTA 58.874 61.111 0.00 0.00 0.00 2.74
881 3495 4.814294 CTGTCGGGTGGCGCCTAC 62.814 72.222 29.70 22.61 37.43 3.18
1482 4109 4.442192 CGAAGATGAAAGGTCCTTAGAGGG 60.442 50.000 4.04 0.00 35.59 4.30
1529 4156 4.396166 ACACGGGAGAATCACAAATCAATC 59.604 41.667 0.00 0.00 39.81 2.67
1549 4176 4.364415 TCTGCACTTAAACCAACAACAC 57.636 40.909 0.00 0.00 0.00 3.32
1558 4188 8.905702 CACTAATGTCAAAATCTGCACTTAAAC 58.094 33.333 0.00 0.00 0.00 2.01
1664 4294 2.580815 CAGCCCTCGCTCATGTGA 59.419 61.111 0.00 0.00 43.95 3.58
1891 4534 6.824305 ACAGCAGATACAAAATATATGCCC 57.176 37.500 9.32 0.00 41.53 5.36
1897 4540 8.995027 TCCCAAATACAGCAGATACAAAATAT 57.005 30.769 0.00 0.00 0.00 1.28
1898 4541 8.815565 TTCCCAAATACAGCAGATACAAAATA 57.184 30.769 0.00 0.00 0.00 1.40
1899 4542 7.716799 TTCCCAAATACAGCAGATACAAAAT 57.283 32.000 0.00 0.00 0.00 1.82
1900 4543 7.395772 TGATTCCCAAATACAGCAGATACAAAA 59.604 33.333 0.00 0.00 0.00 2.44
1901 4544 6.889177 TGATTCCCAAATACAGCAGATACAAA 59.111 34.615 0.00 0.00 0.00 2.83
1902 4545 6.422333 TGATTCCCAAATACAGCAGATACAA 58.578 36.000 0.00 0.00 0.00 2.41
1903 4546 6.000246 TGATTCCCAAATACAGCAGATACA 58.000 37.500 0.00 0.00 0.00 2.29
1904 4547 6.072286 CCATGATTCCCAAATACAGCAGATAC 60.072 42.308 0.00 0.00 0.00 2.24
1936 4579 3.430862 CCAATGGCGTGTCACCGG 61.431 66.667 0.00 0.00 0.00 5.28
1957 4610 9.660180 AACACAACAAAAGGTAACAACATAATT 57.340 25.926 0.00 0.00 41.41 1.40
1992 4674 5.690409 TCTTGTGAGACGTTGATTAGACAAC 59.310 40.000 0.00 0.00 44.31 3.32
2003 4685 7.169982 CAGAGTTTAAGAATCTTGTGAGACGTT 59.830 37.037 5.64 0.00 33.99 3.99
2015 4697 7.279758 AGCAGATAAGCACAGAGTTTAAGAATC 59.720 37.037 0.00 0.00 36.85 2.52
2044 4726 4.522022 CCACAAAGAAGAGAAGCTCCAAAT 59.478 41.667 0.00 0.00 0.00 2.32
2077 4759 3.518992 AGCTTTGGTAAAGGCTTGGTA 57.481 42.857 0.00 0.00 45.74 3.25
2078 4760 2.381752 AGCTTTGGTAAAGGCTTGGT 57.618 45.000 0.00 0.00 45.74 3.67
2083 4765 9.917129 TTATTAAGTTTAAGCTTTGGTAAAGGC 57.083 29.630 9.99 0.00 38.93 4.35
2136 4829 6.875726 AGAATTCAGATGAAGAACGAACATGA 59.124 34.615 8.44 0.00 37.48 3.07
2160 4853 9.458374 ACGATTCACCATTTTTAGTTTTAACAG 57.542 29.630 0.00 0.00 0.00 3.16
2172 4865 7.784633 ACAATGAAAAACGATTCACCATTTT 57.215 28.000 0.00 0.00 41.78 1.82
2185 4878 7.463469 AACGATTTCCTCAACAATGAAAAAC 57.537 32.000 0.00 0.00 34.49 2.43
2186 4879 9.026074 GTTAACGATTTCCTCAACAATGAAAAA 57.974 29.630 0.00 0.00 34.49 1.94
2187 4880 8.410141 AGTTAACGATTTCCTCAACAATGAAAA 58.590 29.630 0.00 0.00 34.49 2.29
2188 4881 7.860373 CAGTTAACGATTTCCTCAACAATGAAA 59.140 33.333 0.00 0.00 34.49 2.69
2189 4882 7.359595 CAGTTAACGATTTCCTCAACAATGAA 58.640 34.615 0.00 0.00 34.49 2.57
2190 4883 6.072728 CCAGTTAACGATTTCCTCAACAATGA 60.073 38.462 0.00 0.00 0.00 2.57
2191 4884 6.086222 CCAGTTAACGATTTCCTCAACAATG 58.914 40.000 0.00 0.00 0.00 2.82
2192 4885 5.768164 ACCAGTTAACGATTTCCTCAACAAT 59.232 36.000 0.00 0.00 0.00 2.71
2193 4886 5.127491 ACCAGTTAACGATTTCCTCAACAA 58.873 37.500 0.00 0.00 0.00 2.83
2194 4887 4.710324 ACCAGTTAACGATTTCCTCAACA 58.290 39.130 0.00 0.00 0.00 3.33
2195 4888 6.426025 AGTTACCAGTTAACGATTTCCTCAAC 59.574 38.462 0.00 0.00 44.39 3.18
2196 4889 6.425721 CAGTTACCAGTTAACGATTTCCTCAA 59.574 38.462 0.00 0.00 44.39 3.02
2197 4890 5.929992 CAGTTACCAGTTAACGATTTCCTCA 59.070 40.000 0.00 0.00 44.39 3.86
2198 4891 5.163884 GCAGTTACCAGTTAACGATTTCCTC 60.164 44.000 0.00 0.00 44.39 3.71
2199 4892 4.694037 GCAGTTACCAGTTAACGATTTCCT 59.306 41.667 0.00 0.00 44.39 3.36
2200 4893 4.694037 AGCAGTTACCAGTTAACGATTTCC 59.306 41.667 0.00 0.00 44.39 3.13
2201 4894 5.444218 CGAGCAGTTACCAGTTAACGATTTC 60.444 44.000 0.00 0.00 44.39 2.17
2202 4895 4.387862 CGAGCAGTTACCAGTTAACGATTT 59.612 41.667 0.00 0.00 44.39 2.17
2203 4896 3.924686 CGAGCAGTTACCAGTTAACGATT 59.075 43.478 0.00 0.00 44.39 3.34
2204 4897 3.508762 CGAGCAGTTACCAGTTAACGAT 58.491 45.455 0.00 0.00 44.39 3.73
2205 4898 2.352030 CCGAGCAGTTACCAGTTAACGA 60.352 50.000 0.00 0.00 44.39 3.85
2206 4899 1.990563 CCGAGCAGTTACCAGTTAACG 59.009 52.381 0.00 0.00 44.39 3.18
2207 4900 3.036075 ACCGAGCAGTTACCAGTTAAC 57.964 47.619 0.00 0.00 40.57 2.01
2208 4901 3.395639 CAACCGAGCAGTTACCAGTTAA 58.604 45.455 0.00 0.00 0.00 2.01
2209 4902 2.289195 CCAACCGAGCAGTTACCAGTTA 60.289 50.000 0.00 0.00 0.00 2.24
2210 4903 1.542547 CCAACCGAGCAGTTACCAGTT 60.543 52.381 0.00 0.00 0.00 3.16
2211 4904 0.034896 CCAACCGAGCAGTTACCAGT 59.965 55.000 0.00 0.00 0.00 4.00
2212 4905 1.298859 GCCAACCGAGCAGTTACCAG 61.299 60.000 0.00 0.00 0.00 4.00
2213 4906 1.302192 GCCAACCGAGCAGTTACCA 60.302 57.895 0.00 0.00 0.00 3.25
2214 4907 0.248289 TAGCCAACCGAGCAGTTACC 59.752 55.000 0.00 0.00 0.00 2.85
2215 4908 1.641577 CTAGCCAACCGAGCAGTTAC 58.358 55.000 0.00 0.00 0.00 2.50
2216 4909 0.108329 GCTAGCCAACCGAGCAGTTA 60.108 55.000 2.29 0.00 41.28 2.24
2217 4910 1.376037 GCTAGCCAACCGAGCAGTT 60.376 57.895 2.29 0.00 41.28 3.16
2218 4911 2.266055 GCTAGCCAACCGAGCAGT 59.734 61.111 2.29 0.00 41.28 4.40
2219 4912 2.887568 CGCTAGCCAACCGAGCAG 60.888 66.667 9.66 0.00 41.66 4.24
2220 4913 3.356639 CTCGCTAGCCAACCGAGCA 62.357 63.158 9.66 0.00 41.66 4.26
2221 4914 2.583593 CTCGCTAGCCAACCGAGC 60.584 66.667 9.66 0.00 41.41 5.03
2223 4916 1.381928 CCTACTCGCTAGCCAACCGA 61.382 60.000 9.66 0.00 0.00 4.69
2224 4917 1.065928 CCTACTCGCTAGCCAACCG 59.934 63.158 9.66 0.00 0.00 4.44
2225 4918 1.442148 CCCTACTCGCTAGCCAACC 59.558 63.158 9.66 0.00 0.00 3.77
2226 4919 1.041447 TCCCCTACTCGCTAGCCAAC 61.041 60.000 9.66 0.00 0.00 3.77
2227 4920 0.105658 ATCCCCTACTCGCTAGCCAA 60.106 55.000 9.66 0.00 0.00 4.52
2228 4921 0.105658 AATCCCCTACTCGCTAGCCA 60.106 55.000 9.66 0.00 0.00 4.75
2229 4922 1.920610 TAATCCCCTACTCGCTAGCC 58.079 55.000 9.66 0.00 0.00 3.93
2230 4923 4.098196 CCTATTAATCCCCTACTCGCTAGC 59.902 50.000 4.06 4.06 0.00 3.42
2231 4924 4.098196 GCCTATTAATCCCCTACTCGCTAG 59.902 50.000 0.00 0.00 0.00 3.42
2232 4925 4.021916 GCCTATTAATCCCCTACTCGCTA 58.978 47.826 0.00 0.00 0.00 4.26
2233 4926 2.832733 GCCTATTAATCCCCTACTCGCT 59.167 50.000 0.00 0.00 0.00 4.93
2234 4927 2.832733 AGCCTATTAATCCCCTACTCGC 59.167 50.000 0.00 0.00 0.00 5.03
2235 4928 6.459848 CGATTAGCCTATTAATCCCCTACTCG 60.460 46.154 0.00 3.50 36.93 4.18
2236 4929 6.380560 ACGATTAGCCTATTAATCCCCTACTC 59.619 42.308 0.00 0.00 36.93 2.59
2237 4930 6.262207 ACGATTAGCCTATTAATCCCCTACT 58.738 40.000 0.00 0.00 36.93 2.57
2238 4931 6.154021 TGACGATTAGCCTATTAATCCCCTAC 59.846 42.308 0.00 0.00 36.93 3.18
2239 4932 6.258354 TGACGATTAGCCTATTAATCCCCTA 58.742 40.000 0.00 0.00 36.93 3.53
2240 4933 5.091552 TGACGATTAGCCTATTAATCCCCT 58.908 41.667 0.00 0.00 36.93 4.79
2241 4934 5.416271 TGACGATTAGCCTATTAATCCCC 57.584 43.478 0.00 0.00 36.93 4.81
2242 4935 6.465084 ACTTGACGATTAGCCTATTAATCCC 58.535 40.000 0.00 0.00 36.93 3.85
2243 4936 7.964604 AACTTGACGATTAGCCTATTAATCC 57.035 36.000 0.00 0.00 36.93 3.01
2246 4939 9.188588 CGATTAACTTGACGATTAGCCTATTAA 57.811 33.333 0.00 0.00 0.00 1.40
2247 4940 8.570488 TCGATTAACTTGACGATTAGCCTATTA 58.430 33.333 0.00 0.00 0.00 0.98
2248 4941 7.381678 GTCGATTAACTTGACGATTAGCCTATT 59.618 37.037 0.00 0.00 37.14 1.73
2249 4942 6.862090 GTCGATTAACTTGACGATTAGCCTAT 59.138 38.462 0.00 0.00 37.14 2.57
2250 4943 6.204359 GTCGATTAACTTGACGATTAGCCTA 58.796 40.000 0.00 0.00 37.14 3.93
2251 4944 5.041940 GTCGATTAACTTGACGATTAGCCT 58.958 41.667 0.00 0.00 37.14 4.58
2252 4945 4.208666 GGTCGATTAACTTGACGATTAGCC 59.791 45.833 0.00 0.00 38.94 3.93
2253 4946 4.802039 TGGTCGATTAACTTGACGATTAGC 59.198 41.667 0.00 0.00 38.94 3.09
2254 4947 7.464830 AATGGTCGATTAACTTGACGATTAG 57.535 36.000 10.19 0.00 41.99 1.73
2255 4948 7.837202 AAATGGTCGATTAACTTGACGATTA 57.163 32.000 11.51 0.00 42.60 1.75
2256 4949 6.737254 AAATGGTCGATTAACTTGACGATT 57.263 33.333 0.00 7.52 44.25 3.34
2257 4950 7.837202 TTAAATGGTCGATTAACTTGACGAT 57.163 32.000 0.00 0.00 38.08 3.73
2258 4951 7.546316 TGATTAAATGGTCGATTAACTTGACGA 59.454 33.333 0.00 0.00 38.94 4.20
2259 4952 7.680982 TGATTAAATGGTCGATTAACTTGACG 58.319 34.615 0.00 0.00 38.94 4.35
2268 4961 9.062524 TCCGATTAATTGATTAAATGGTCGATT 57.937 29.630 14.17 0.00 35.06 3.34
2269 4962 8.504005 GTCCGATTAATTGATTAAATGGTCGAT 58.496 33.333 14.17 0.00 35.06 3.59
2270 4963 7.306925 CGTCCGATTAATTGATTAAATGGTCGA 60.307 37.037 19.51 0.00 40.26 4.20
2271 4964 6.790350 CGTCCGATTAATTGATTAAATGGTCG 59.210 38.462 4.10 15.17 36.68 4.79
2272 4965 7.857569 TCGTCCGATTAATTGATTAAATGGTC 58.142 34.615 4.10 9.11 36.02 4.02
2273 4966 7.795482 TCGTCCGATTAATTGATTAAATGGT 57.205 32.000 4.10 0.00 36.02 3.55
2274 4967 9.677567 AAATCGTCCGATTAATTGATTAAATGG 57.322 29.630 14.61 5.88 43.26 3.16
2280 4973 8.846211 ACCAATAAATCGTCCGATTAATTGATT 58.154 29.630 14.61 7.60 43.26 2.57
2281 4974 8.391075 ACCAATAAATCGTCCGATTAATTGAT 57.609 30.769 14.61 1.97 43.26 2.57
2282 4975 7.795482 ACCAATAAATCGTCCGATTAATTGA 57.205 32.000 14.61 0.00 43.26 2.57
2283 4976 8.850454 AAACCAATAAATCGTCCGATTAATTG 57.150 30.769 14.61 6.40 43.26 2.32
2286 4979 8.489559 CGATAAACCAATAAATCGTCCGATTAA 58.510 33.333 14.61 0.00 43.26 1.40
2287 4980 7.116662 CCGATAAACCAATAAATCGTCCGATTA 59.883 37.037 14.61 5.07 43.26 1.75
2288 4981 6.073440 CCGATAAACCAATAAATCGTCCGATT 60.073 38.462 9.01 9.01 45.67 3.34
2289 4982 5.407387 CCGATAAACCAATAAATCGTCCGAT 59.593 40.000 0.00 0.00 39.58 4.18
2290 4983 4.746115 CCGATAAACCAATAAATCGTCCGA 59.254 41.667 0.00 0.00 39.58 4.55
2291 4984 4.609783 GCCGATAAACCAATAAATCGTCCG 60.610 45.833 0.00 0.00 39.58 4.79
2292 4985 4.514066 AGCCGATAAACCAATAAATCGTCC 59.486 41.667 0.00 0.00 39.58 4.79
2293 4986 5.668558 AGCCGATAAACCAATAAATCGTC 57.331 39.130 0.00 0.00 39.58 4.20
2294 4987 6.285990 AGTAGCCGATAAACCAATAAATCGT 58.714 36.000 0.00 0.00 39.58 3.73
2295 4988 6.399669 CGAGTAGCCGATAAACCAATAAATCG 60.400 42.308 0.00 0.00 40.60 3.34
2296 4989 6.128634 CCGAGTAGCCGATAAACCAATAAATC 60.129 42.308 0.00 0.00 0.00 2.17
2297 4990 5.699458 CCGAGTAGCCGATAAACCAATAAAT 59.301 40.000 0.00 0.00 0.00 1.40
2298 4991 5.051816 CCGAGTAGCCGATAAACCAATAAA 58.948 41.667 0.00 0.00 0.00 1.40
2299 4992 4.099881 ACCGAGTAGCCGATAAACCAATAA 59.900 41.667 0.00 0.00 0.00 1.40
2300 4993 3.638160 ACCGAGTAGCCGATAAACCAATA 59.362 43.478 0.00 0.00 0.00 1.90
2301 4994 2.433239 ACCGAGTAGCCGATAAACCAAT 59.567 45.455 0.00 0.00 0.00 3.16
2302 4995 1.826720 ACCGAGTAGCCGATAAACCAA 59.173 47.619 0.00 0.00 0.00 3.67
2303 4996 1.135527 CACCGAGTAGCCGATAAACCA 59.864 52.381 0.00 0.00 0.00 3.67
2304 4997 1.406539 TCACCGAGTAGCCGATAAACC 59.593 52.381 0.00 0.00 0.00 3.27
2305 4998 2.457970 GTCACCGAGTAGCCGATAAAC 58.542 52.381 0.00 0.00 0.00 2.01
2306 4999 1.406539 GGTCACCGAGTAGCCGATAAA 59.593 52.381 0.00 0.00 0.00 1.40
2307 5000 1.027357 GGTCACCGAGTAGCCGATAA 58.973 55.000 0.00 0.00 0.00 1.75
2308 5001 0.820891 GGGTCACCGAGTAGCCGATA 60.821 60.000 0.00 0.00 0.00 2.92
2309 5002 2.125961 GGGTCACCGAGTAGCCGAT 61.126 63.158 0.00 0.00 0.00 4.18
2310 5003 1.913951 TAGGGTCACCGAGTAGCCGA 61.914 60.000 0.00 0.00 43.47 5.54
2311 5004 1.445716 CTAGGGTCACCGAGTAGCCG 61.446 65.000 0.00 0.00 43.47 5.52
2312 5005 1.108132 CCTAGGGTCACCGAGTAGCC 61.108 65.000 0.00 0.00 43.47 3.93
2313 5006 0.106819 TCCTAGGGTCACCGAGTAGC 60.107 60.000 9.46 0.00 43.47 3.58
2314 5007 1.212441 ACTCCTAGGGTCACCGAGTAG 59.788 57.143 9.46 0.00 43.47 2.57
2315 5008 1.293062 ACTCCTAGGGTCACCGAGTA 58.707 55.000 9.46 0.00 43.47 2.59
2316 5009 1.212441 CTACTCCTAGGGTCACCGAGT 59.788 57.143 9.46 7.23 43.47 4.18
2317 5010 1.477195 CCTACTCCTAGGGTCACCGAG 60.477 61.905 9.46 0.00 43.47 4.63
2318 5011 0.549950 CCTACTCCTAGGGTCACCGA 59.450 60.000 9.46 0.00 43.47 4.69
2319 5012 3.112965 CCTACTCCTAGGGTCACCG 57.887 63.158 9.46 0.00 43.47 4.94
2326 5019 3.163467 CCGATTAACCCCTACTCCTAGG 58.837 54.545 0.82 0.82 39.67 3.02
2327 5020 3.825585 GTCCGATTAACCCCTACTCCTAG 59.174 52.174 0.00 0.00 0.00 3.02
2328 5021 3.748668 CGTCCGATTAACCCCTACTCCTA 60.749 52.174 0.00 0.00 0.00 2.94
2329 5022 2.675583 GTCCGATTAACCCCTACTCCT 58.324 52.381 0.00 0.00 0.00 3.69
2330 5023 1.339291 CGTCCGATTAACCCCTACTCC 59.661 57.143 0.00 0.00 0.00 3.85
2331 5024 2.301346 TCGTCCGATTAACCCCTACTC 58.699 52.381 0.00 0.00 0.00 2.59
2332 5025 2.442236 TCGTCCGATTAACCCCTACT 57.558 50.000 0.00 0.00 0.00 2.57
2333 5026 3.740631 ATTCGTCCGATTAACCCCTAC 57.259 47.619 0.00 0.00 0.00 3.18
2334 5027 3.962718 AGAATTCGTCCGATTAACCCCTA 59.037 43.478 0.00 0.00 0.00 3.53
2335 5028 2.770232 AGAATTCGTCCGATTAACCCCT 59.230 45.455 0.00 0.00 0.00 4.79
2336 5029 3.189618 AGAATTCGTCCGATTAACCCC 57.810 47.619 0.00 0.00 0.00 4.95
2337 5030 4.186159 TCAAGAATTCGTCCGATTAACCC 58.814 43.478 0.00 0.00 0.00 4.11
2338 5031 5.121142 TGTTCAAGAATTCGTCCGATTAACC 59.879 40.000 0.00 0.00 0.00 2.85
2339 5032 6.160664 TGTTCAAGAATTCGTCCGATTAAC 57.839 37.500 0.00 0.00 0.00 2.01
2340 5033 5.350365 CCTGTTCAAGAATTCGTCCGATTAA 59.650 40.000 0.00 0.00 0.00 1.40
2341 5034 4.868171 CCTGTTCAAGAATTCGTCCGATTA 59.132 41.667 0.00 0.00 0.00 1.75
2342 5035 3.684788 CCTGTTCAAGAATTCGTCCGATT 59.315 43.478 0.00 0.00 0.00 3.34
2343 5036 3.262420 CCTGTTCAAGAATTCGTCCGAT 58.738 45.455 0.00 0.00 0.00 4.18
2344 5037 2.036733 ACCTGTTCAAGAATTCGTCCGA 59.963 45.455 0.00 0.00 0.00 4.55
2345 5038 2.413837 ACCTGTTCAAGAATTCGTCCG 58.586 47.619 0.00 0.00 0.00 4.79
2346 5039 4.830826 AAACCTGTTCAAGAATTCGTCC 57.169 40.909 0.00 0.00 0.00 4.79
2401 5094 0.672091 TAAGAGAACCAATGCGCGCA 60.672 50.000 38.27 38.27 0.00 6.09
2422 5115 6.329496 TGGTCAAAGTTTGTGAAATTGACTC 58.671 36.000 15.08 7.37 0.00 3.36
2423 5116 6.279513 TGGTCAAAGTTTGTGAAATTGACT 57.720 33.333 15.08 0.00 0.00 3.41
2424 5117 6.959671 TTGGTCAAAGTTTGTGAAATTGAC 57.040 33.333 15.08 8.10 0.00 3.18
2740 5780 9.209048 AGAAGTGGACCACTGTATAACAATATA 57.791 33.333 27.79 0.00 44.62 0.86
2855 5896 7.782049 AGGGAAGAAAACTAAAAGGTTGAAAG 58.218 34.615 0.00 0.00 0.00 2.62
2992 6035 4.041567 TGATAGCAAACCAAGAAGACTCCA 59.958 41.667 0.00 0.00 0.00 3.86
3055 6098 9.723601 ATTTCCAAATAGCTAAATTTTGAAGCA 57.276 25.926 16.42 2.71 38.75 3.91
3069 6112 4.920376 TGCTAGCGAAATTTCCAAATAGC 58.080 39.130 20.66 20.66 0.00 2.97
3072 6115 6.699575 AGTATGCTAGCGAAATTTCCAAAT 57.300 33.333 10.77 0.00 0.00 2.32
3143 6186 9.196552 GCATTAGTTTGAAAATTAGCACTTCTT 57.803 29.630 0.00 0.00 0.00 2.52
3237 6280 4.556942 TCATGAGCAAATTAAGCATCGG 57.443 40.909 0.00 0.00 0.00 4.18
3292 6335 6.438763 GGATATTAGAAATTCGCCACCAAAG 58.561 40.000 0.00 0.00 0.00 2.77
3310 6353 7.175104 TCTGTGCAGTAAAGAAAAGGGATATT 58.825 34.615 0.00 0.00 0.00 1.28
3348 6393 5.525745 TGCGAATTTTGTGACAACTTCTCTA 59.474 36.000 14.26 2.83 0.00 2.43
3451 6507 1.022735 ATACGCTGACCACCTCTACG 58.977 55.000 0.00 0.00 0.00 3.51
3530 6586 3.941483 GCTTCCAGAGGAATCGATTCAAA 59.059 43.478 32.92 17.78 41.23 2.69
3557 6613 5.555017 AGCATCACTGACTGTATCTTTTGT 58.445 37.500 0.00 0.00 0.00 2.83
3653 6709 5.246981 TCCATCCTTGATTGTGAGAACTT 57.753 39.130 0.00 0.00 0.00 2.66
3679 6741 4.223032 TCTTTAGAGGGAGTGTGAATGGTC 59.777 45.833 0.00 0.00 0.00 4.02
3725 6787 4.156739 GGGTGTTCTTTCTTCAATGCTAGG 59.843 45.833 0.00 0.00 0.00 3.02
4014 7076 3.433274 CGCCATTGATATCGTGCTACATT 59.567 43.478 0.00 0.00 0.00 2.71
4020 7085 1.867233 AGTTCGCCATTGATATCGTGC 59.133 47.619 0.00 0.00 0.00 5.34
4021 7086 3.303329 CCAAGTTCGCCATTGATATCGTG 60.303 47.826 0.00 0.00 0.00 4.35
4022 7087 2.872245 CCAAGTTCGCCATTGATATCGT 59.128 45.455 0.00 0.00 0.00 3.73
4023 7088 2.872245 ACCAAGTTCGCCATTGATATCG 59.128 45.455 0.00 0.00 0.00 2.92
4038 7103 2.158813 ACAAAGTCGGTGATGACCAAGT 60.159 45.455 1.19 0.00 43.33 3.16
4053 7118 4.494484 GTTTCAAACCAGAAGCACAAAGT 58.506 39.130 0.00 0.00 0.00 2.66
4057 7122 2.360844 TCGTTTCAAACCAGAAGCACA 58.639 42.857 0.00 0.00 0.00 4.57
4091 7156 1.342672 ACAGTGGACGGAACCCAAGT 61.343 55.000 0.00 0.00 35.12 3.16
4156 7221 5.022787 AGAGATAAGAGCAGAAGGTGAACT 58.977 41.667 0.00 0.00 0.00 3.01
4180 7245 0.449388 GAAACTGATCTTGGCGGCAG 59.551 55.000 12.87 6.93 34.65 4.85
4234 7299 6.569801 GCTCTCTACACACTGTACAACATGTA 60.570 42.308 0.00 4.98 0.00 2.29
4235 7300 5.773575 CTCTCTACACACTGTACAACATGT 58.226 41.667 0.00 4.01 0.00 3.21
4236 7301 4.623167 GCTCTCTACACACTGTACAACATG 59.377 45.833 0.00 0.00 0.00 3.21
4237 7302 4.280929 TGCTCTCTACACACTGTACAACAT 59.719 41.667 0.00 0.00 0.00 2.71
4406 7474 5.782893 TGGATGTTTGACAAGGTTTTAGG 57.217 39.130 0.00 0.00 0.00 2.69
4478 7546 2.416747 GTCCCTGCTTTGCCAAATTTC 58.583 47.619 0.00 0.00 0.00 2.17
4509 7577 0.948141 GAAAGACGCTGACTGCTGCT 60.948 55.000 0.00 0.00 40.11 4.24
4514 7582 2.748605 ACAAGAGAAAGACGCTGACTG 58.251 47.619 0.00 0.00 0.00 3.51
4538 7606 3.815401 AGACACAGCAATTTGTCACCTAC 59.185 43.478 9.94 0.00 43.94 3.18
4553 7621 6.763610 ACCTAAAGAACAAGAGAAAGACACAG 59.236 38.462 0.00 0.00 0.00 3.66
4607 7675 4.572389 CAGCGTTAAACTATGGATCAAGCT 59.428 41.667 0.00 0.00 0.00 3.74
4664 7732 6.887545 ACCCATGATGCATCAAAATCAATTTT 59.112 30.769 31.79 9.78 40.69 1.82
4668 7736 6.541934 TTACCCATGATGCATCAAAATCAA 57.458 33.333 31.79 19.58 40.69 2.57
4677 7745 3.707611 ACAGCAAATTACCCATGATGCAT 59.292 39.130 0.00 0.00 33.98 3.96
4689 7757 6.238731 CCAGAAAGAAGACACACAGCAAATTA 60.239 38.462 0.00 0.00 0.00 1.40
4694 7762 2.170397 TCCAGAAAGAAGACACACAGCA 59.830 45.455 0.00 0.00 0.00 4.41
4783 7853 2.306847 ACACAAACAACATCCCTGGAC 58.693 47.619 0.00 0.00 0.00 4.02
4790 7860 2.483583 TGCGGAACACAAACAACATC 57.516 45.000 0.00 0.00 0.00 3.06
4806 7881 1.466167 AGCATTGTAAGCTGAAGTGCG 59.534 47.619 0.00 0.00 41.61 5.34
4833 7908 3.570212 ACCCAGACCCAGGTGTGC 61.570 66.667 8.43 0.00 37.97 4.57
4838 7913 3.081554 CTTCCACCCAGACCCAGG 58.918 66.667 0.00 0.00 0.00 4.45
4839 7914 2.067932 TTGCTTCCACCCAGACCCAG 62.068 60.000 0.00 0.00 0.00 4.45
4840 7915 2.067932 CTTGCTTCCACCCAGACCCA 62.068 60.000 0.00 0.00 0.00 4.51
4841 7916 1.303643 CTTGCTTCCACCCAGACCC 60.304 63.158 0.00 0.00 0.00 4.46
4842 7917 1.303643 CCTTGCTTCCACCCAGACC 60.304 63.158 0.00 0.00 0.00 3.85
4843 7918 0.110486 TTCCTTGCTTCCACCCAGAC 59.890 55.000 0.00 0.00 0.00 3.51
4844 7919 0.850100 TTTCCTTGCTTCCACCCAGA 59.150 50.000 0.00 0.00 0.00 3.86
4849 7924 4.097892 TCTTGTTTCTTTCCTTGCTTCCAC 59.902 41.667 0.00 0.00 0.00 4.02
4873 7948 1.338769 CCAACCAAACCTAGACCTCCG 60.339 57.143 0.00 0.00 0.00 4.63
4874 7949 1.613520 GCCAACCAAACCTAGACCTCC 60.614 57.143 0.00 0.00 0.00 4.30
4904 7979 2.588731 GGCGCAAGACCAAAACAAC 58.411 52.632 10.83 0.00 42.36 3.32
4937 8012 4.041567 ACAACATCAGTGATCAGTAACCCA 59.958 41.667 1.56 0.00 0.00 4.51
4940 8015 6.365839 CAACACAACATCAGTGATCAGTAAC 58.634 40.000 1.56 0.00 40.16 2.50
4941 8016 5.469760 CCAACACAACATCAGTGATCAGTAA 59.530 40.000 1.56 0.00 40.16 2.24
4942 8017 4.996758 CCAACACAACATCAGTGATCAGTA 59.003 41.667 1.56 0.00 40.16 2.74
4943 8018 3.817084 CCAACACAACATCAGTGATCAGT 59.183 43.478 1.56 0.00 40.16 3.41
4944 8019 3.365666 GCCAACACAACATCAGTGATCAG 60.366 47.826 1.56 0.00 40.16 2.90
4945 8020 2.553602 GCCAACACAACATCAGTGATCA 59.446 45.455 1.56 0.00 40.16 2.92
4946 8021 2.816087 AGCCAACACAACATCAGTGATC 59.184 45.455 1.56 0.00 40.16 2.92
4947 8022 2.867624 AGCCAACACAACATCAGTGAT 58.132 42.857 0.00 0.00 40.16 3.06
4948 8023 2.346766 AGCCAACACAACATCAGTGA 57.653 45.000 0.00 0.00 40.16 3.41
4949 8024 2.099592 ACAAGCCAACACAACATCAGTG 59.900 45.455 0.00 0.00 42.56 3.66
4993 8068 3.973472 ATAAAGGGAGGGGTCAAATCC 57.027 47.619 0.00 0.00 0.00 3.01


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.