Multiple sequence alignment - TraesCS4B01G084200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G084200 chr4B 100.000 6090 0 0 1 6090 82599088 82605177 0.000000e+00 11247.0
1 TraesCS4B01G084200 chr4D 94.624 2046 65 18 1979 4010 55561285 55563299 0.000000e+00 3127.0
2 TraesCS4B01G084200 chr4D 91.380 1775 95 20 4007 5756 55563330 55565071 0.000000e+00 2377.0
3 TraesCS4B01G084200 chr4D 91.658 1007 55 13 845 1839 55559723 55560712 0.000000e+00 1367.0
4 TraesCS4B01G084200 chr4A 93.382 1103 57 5 4007 5094 541362646 541361545 0.000000e+00 1618.0
5 TraesCS4B01G084200 chr4A 96.739 920 24 3 3091 4010 541363590 541362677 0.000000e+00 1528.0
6 TraesCS4B01G084200 chr4A 92.969 896 37 13 1756 2643 541365235 541364358 0.000000e+00 1282.0
7 TraesCS4B01G084200 chr4A 92.127 851 46 9 920 1759 541366348 541365508 0.000000e+00 1181.0
8 TraesCS4B01G084200 chr4A 87.654 486 21 17 2642 3108 541364244 541363779 4.180000e-146 529.0
9 TraesCS4B01G084200 chr4A 88.166 338 30 5 5156 5491 541361543 541361214 1.590000e-105 394.0
10 TraesCS4B01G084200 chr4A 87.197 289 19 4 5490 5761 541361155 541360868 4.580000e-81 313.0
11 TraesCS4B01G084200 chr4A 79.570 93 17 2 244 335 476498343 476498434 1.420000e-06 65.8
12 TraesCS4B01G084200 chr1B 97.574 742 18 0 1 742 657166395 657167136 0.000000e+00 1271.0
13 TraesCS4B01G084200 chr3D 86.757 740 97 1 1 740 48621595 48622333 0.000000e+00 822.0
14 TraesCS4B01G084200 chr3D 94.481 308 16 1 5761 6068 593452624 593452930 1.990000e-129 473.0
15 TraesCS4B01G084200 chr2D 86.314 738 101 0 3 740 452308467 452309204 0.000000e+00 804.0
16 TraesCS4B01G084200 chr2D 92.138 318 24 1 5760 6077 644547945 644548261 1.200000e-121 448.0
17 TraesCS4B01G084200 chr6D 85.270 740 108 1 1 740 259335139 259334401 0.000000e+00 761.0
18 TraesCS4B01G084200 chrUn 95.312 320 14 1 5759 6078 79229023 79228705 1.960000e-139 507.0
19 TraesCS4B01G084200 chr6B 94.025 318 18 1 5761 6078 550720802 550721118 1.190000e-131 481.0
20 TraesCS4B01G084200 chr6B 94.194 310 17 1 5768 6077 58806176 58806484 7.150000e-129 472.0
21 TraesCS4B01G084200 chr6A 92.138 318 20 4 5760 6077 17832187 17832499 1.560000e-120 444.0
22 TraesCS4B01G084200 chr5B 90.390 333 23 6 5749 6077 6363008 6363335 4.360000e-116 429.0
23 TraesCS4B01G084200 chr2B 89.474 342 29 7 5742 6081 88624652 88624316 5.640000e-115 425.0
24 TraesCS4B01G084200 chr2B 89.912 228 23 0 3 230 544046432 544046659 1.660000e-75 294.0
25 TraesCS4B01G084200 chr2B 89.912 228 23 0 3 230 544491406 544491633 1.660000e-75 294.0
26 TraesCS4B01G084200 chr1A 90.446 314 29 1 5763 6076 391944514 391944826 4.390000e-111 412.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G084200 chr4B 82599088 82605177 6089 False 11247.000000 11247 100.000000 1 6090 1 chr4B.!!$F1 6089
1 TraesCS4B01G084200 chr4D 55559723 55565071 5348 False 2290.333333 3127 92.554000 845 5756 3 chr4D.!!$F1 4911
2 TraesCS4B01G084200 chr4A 541360868 541366348 5480 True 977.857143 1618 91.176286 920 5761 7 chr4A.!!$R1 4841
3 TraesCS4B01G084200 chr1B 657166395 657167136 741 False 1271.000000 1271 97.574000 1 742 1 chr1B.!!$F1 741
4 TraesCS4B01G084200 chr3D 48621595 48622333 738 False 822.000000 822 86.757000 1 740 1 chr3D.!!$F1 739
5 TraesCS4B01G084200 chr2D 452308467 452309204 737 False 804.000000 804 86.314000 3 740 1 chr2D.!!$F1 737
6 TraesCS4B01G084200 chr6D 259334401 259335139 738 True 761.000000 761 85.270000 1 740 1 chr6D.!!$R1 739

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
989 993 0.251386 TCCGTGTCTCTCTCTGCCTT 60.251 55.0 0.00 0.0 0.0 4.35 F
2843 3764 0.171455 GGTCTGGAGTGTGTCGCTAG 59.829 60.0 0.00 0.0 0.0 3.42 F
4180 5337 0.883833 CTTTGCGCCAGAACATCCTT 59.116 50.0 4.18 0.0 0.0 3.36 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2852 3773 2.158900 AGCCAAAGCGCAGATATACAGT 60.159 45.455 11.47 0.0 46.67 3.55 R
4742 5913 0.110486 TTTCCTTCTGGCTGGGTCAC 59.890 55.000 0.00 0.0 0.00 3.67 R
5700 6960 0.044092 TGATAAGGCTGTCAGGGGGA 59.956 55.000 1.14 0.0 0.00 4.81 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
110 111 2.372264 TCTCCAATTCTGCAAGCATCC 58.628 47.619 0.00 0.00 0.00 3.51
454 455 1.136329 TCCTCCTTGCCCTCTTGCTT 61.136 55.000 0.00 0.00 0.00 3.91
594 595 2.742372 GCTGACGGGCAATCGTGT 60.742 61.111 3.82 0.00 43.96 4.49
742 743 6.400568 CAATCTGCAACTTAACATTCCCAAT 58.599 36.000 0.00 0.00 0.00 3.16
743 744 7.546358 CAATCTGCAACTTAACATTCCCAATA 58.454 34.615 0.00 0.00 0.00 1.90
744 745 6.757897 TCTGCAACTTAACATTCCCAATAG 57.242 37.500 0.00 0.00 0.00 1.73
745 746 5.125417 TCTGCAACTTAACATTCCCAATAGC 59.875 40.000 0.00 0.00 0.00 2.97
746 747 4.769488 TGCAACTTAACATTCCCAATAGCA 59.231 37.500 0.00 0.00 0.00 3.49
747 748 5.421693 TGCAACTTAACATTCCCAATAGCAT 59.578 36.000 0.00 0.00 0.00 3.79
748 749 6.070881 TGCAACTTAACATTCCCAATAGCATT 60.071 34.615 0.00 0.00 0.00 3.56
749 750 7.123397 TGCAACTTAACATTCCCAATAGCATTA 59.877 33.333 0.00 0.00 0.00 1.90
750 751 7.435192 GCAACTTAACATTCCCAATAGCATTAC 59.565 37.037 0.00 0.00 0.00 1.89
751 752 8.465999 CAACTTAACATTCCCAATAGCATTACA 58.534 33.333 0.00 0.00 0.00 2.41
752 753 8.766994 ACTTAACATTCCCAATAGCATTACAT 57.233 30.769 0.00 0.00 0.00 2.29
753 754 9.200817 ACTTAACATTCCCAATAGCATTACATT 57.799 29.630 0.00 0.00 0.00 2.71
755 756 9.814899 TTAACATTCCCAATAGCATTACATTTG 57.185 29.630 0.00 0.00 0.00 2.32
756 757 7.658525 ACATTCCCAATAGCATTACATTTGA 57.341 32.000 0.00 0.00 0.00 2.69
757 758 8.076910 ACATTCCCAATAGCATTACATTTGAA 57.923 30.769 0.00 0.00 0.00 2.69
758 759 8.707449 ACATTCCCAATAGCATTACATTTGAAT 58.293 29.630 0.00 0.00 0.00 2.57
759 760 9.550406 CATTCCCAATAGCATTACATTTGAATT 57.450 29.630 0.00 0.00 0.00 2.17
787 788 7.291411 AGAATTTATAGAGACGGTGCATACT 57.709 36.000 0.00 0.00 0.00 2.12
788 789 8.405418 AGAATTTATAGAGACGGTGCATACTA 57.595 34.615 0.00 0.00 0.00 1.82
789 790 9.026121 AGAATTTATAGAGACGGTGCATACTAT 57.974 33.333 0.00 0.00 0.00 2.12
790 791 9.640963 GAATTTATAGAGACGGTGCATACTATT 57.359 33.333 0.00 0.00 0.00 1.73
791 792 9.640963 AATTTATAGAGACGGTGCATACTATTC 57.359 33.333 0.00 0.00 0.00 1.75
792 793 5.646577 ATAGAGACGGTGCATACTATTCC 57.353 43.478 0.00 0.00 0.00 3.01
793 794 2.628657 AGAGACGGTGCATACTATTCCC 59.371 50.000 0.00 0.00 0.00 3.97
794 795 2.364324 GAGACGGTGCATACTATTCCCA 59.636 50.000 0.00 0.00 0.00 4.37
795 796 2.102588 AGACGGTGCATACTATTCCCAC 59.897 50.000 0.00 0.00 0.00 4.61
796 797 2.102588 GACGGTGCATACTATTCCCACT 59.897 50.000 0.00 0.00 0.00 4.00
797 798 2.504175 ACGGTGCATACTATTCCCACTT 59.496 45.455 0.00 0.00 0.00 3.16
798 799 3.707611 ACGGTGCATACTATTCCCACTTA 59.292 43.478 0.00 0.00 0.00 2.24
799 800 4.347000 ACGGTGCATACTATTCCCACTTAT 59.653 41.667 0.00 0.00 0.00 1.73
800 801 5.541101 ACGGTGCATACTATTCCCACTTATA 59.459 40.000 0.00 0.00 0.00 0.98
801 802 6.212791 ACGGTGCATACTATTCCCACTTATAT 59.787 38.462 0.00 0.00 0.00 0.86
802 803 7.398047 ACGGTGCATACTATTCCCACTTATATA 59.602 37.037 0.00 0.00 0.00 0.86
803 804 7.921214 CGGTGCATACTATTCCCACTTATATAG 59.079 40.741 0.00 0.00 0.00 1.31
804 805 8.759782 GGTGCATACTATTCCCACTTATATAGT 58.240 37.037 0.00 0.00 37.52 2.12
827 828 8.843885 AGTAAACTTTGTAGGACCAATTACTC 57.156 34.615 0.00 0.00 28.66 2.59
828 829 8.434392 AGTAAACTTTGTAGGACCAATTACTCA 58.566 33.333 0.00 0.00 28.66 3.41
829 830 9.227777 GTAAACTTTGTAGGACCAATTACTCAT 57.772 33.333 0.00 0.00 0.00 2.90
830 831 8.706322 AAACTTTGTAGGACCAATTACTCATT 57.294 30.769 0.00 0.00 0.00 2.57
831 832 9.802039 AAACTTTGTAGGACCAATTACTCATTA 57.198 29.630 0.00 0.00 0.00 1.90
832 833 9.802039 AACTTTGTAGGACCAATTACTCATTAA 57.198 29.630 0.00 0.00 0.00 1.40
833 834 9.802039 ACTTTGTAGGACCAATTACTCATTAAA 57.198 29.630 0.00 0.00 0.00 1.52
843 844 9.567848 ACCAATTACTCATTAAATAAACTTGCG 57.432 29.630 0.00 0.00 0.00 4.85
866 867 6.200097 GCGTAAATATCATTTGGCCGAAATTT 59.800 34.615 10.16 13.05 31.41 1.82
872 873 4.667262 TCATTTGGCCGAAATTTCATACG 58.333 39.130 17.99 4.63 31.41 3.06
873 874 2.553079 TTGGCCGAAATTTCATACGC 57.447 45.000 17.99 12.18 0.00 4.42
980 984 0.814457 GTCAGCATCTCCGTGTCTCT 59.186 55.000 0.00 0.00 0.00 3.10
984 988 1.064758 AGCATCTCCGTGTCTCTCTCT 60.065 52.381 0.00 0.00 0.00 3.10
985 989 1.065401 GCATCTCCGTGTCTCTCTCTG 59.935 57.143 0.00 0.00 0.00 3.35
989 993 0.251386 TCCGTGTCTCTCTCTGCCTT 60.251 55.000 0.00 0.00 0.00 4.35
1105 1113 0.620556 GTTTGGAGAGCATGGAGGGA 59.379 55.000 0.00 0.00 0.00 4.20
1120 1128 3.063084 GGACTCGCCCTCGACACT 61.063 66.667 0.00 0.00 40.21 3.55
1299 1307 2.674380 CAAGGTCTGGTGCTGGCC 60.674 66.667 0.00 0.00 0.00 5.36
1333 1341 2.833943 TCCTTTCCCGTAACTAACCCTC 59.166 50.000 0.00 0.00 0.00 4.30
1362 1370 6.942532 AACACAAGAATTAAGAAGCAGTCA 57.057 33.333 0.00 0.00 0.00 3.41
1393 1401 2.398554 CCGCTTCGTGATGGGGTTG 61.399 63.158 9.78 0.00 34.99 3.77
1394 1402 1.671054 CGCTTCGTGATGGGGTTGT 60.671 57.895 0.00 0.00 0.00 3.32
1395 1403 0.390603 CGCTTCGTGATGGGGTTGTA 60.391 55.000 0.00 0.00 0.00 2.41
1396 1404 1.084289 GCTTCGTGATGGGGTTGTAC 58.916 55.000 0.00 0.00 0.00 2.90
1397 1405 1.338769 GCTTCGTGATGGGGTTGTACT 60.339 52.381 0.00 0.00 0.00 2.73
1398 1406 2.346803 CTTCGTGATGGGGTTGTACTG 58.653 52.381 0.00 0.00 0.00 2.74
1400 1408 1.024579 CGTGATGGGGTTGTACTGGC 61.025 60.000 0.00 0.00 0.00 4.85
1408 1416 1.232621 GGTTGTACTGGCGTGGAACC 61.233 60.000 0.00 0.00 32.19 3.62
1508 1520 2.125766 GAAGGTTTGGAGGGCGGTCT 62.126 60.000 0.00 0.00 0.00 3.85
1530 1542 7.095355 GGTCTTACTGCGAATTCAAAGAACTAA 60.095 37.037 6.22 0.00 29.96 2.24
1599 1611 3.140332 GGATTAGAAGTGGGGGCCTTTAT 59.860 47.826 0.84 0.00 0.00 1.40
1682 1701 7.256475 CCTGATCTTAGCCCATTAGTTATGACT 60.256 40.741 0.00 0.00 39.97 3.41
1748 1767 8.993121 AGCAATTACCTATGATTTTGTAGATCG 58.007 33.333 0.00 0.00 0.00 3.69
1785 2080 3.004524 GTCGAAAGTAGAGTGAGGTGTGT 59.995 47.826 0.00 0.00 0.00 3.72
1786 2081 3.252701 TCGAAAGTAGAGTGAGGTGTGTC 59.747 47.826 0.00 0.00 0.00 3.67
1787 2082 3.253677 CGAAAGTAGAGTGAGGTGTGTCT 59.746 47.826 0.00 0.00 0.00 3.41
1788 2083 4.551388 GAAAGTAGAGTGAGGTGTGTCTG 58.449 47.826 0.00 0.00 0.00 3.51
1789 2084 3.231207 AGTAGAGTGAGGTGTGTCTGT 57.769 47.619 0.00 0.00 0.00 3.41
1790 2085 4.368565 AGTAGAGTGAGGTGTGTCTGTA 57.631 45.455 0.00 0.00 0.00 2.74
1791 2086 4.328536 AGTAGAGTGAGGTGTGTCTGTAG 58.671 47.826 0.00 0.00 0.00 2.74
1792 2087 3.510531 AGAGTGAGGTGTGTCTGTAGA 57.489 47.619 0.00 0.00 0.00 2.59
1876 2172 6.282568 AGATAGGACCCTGACTAACTACAT 57.717 41.667 0.00 0.00 0.00 2.29
1883 2179 6.046290 ACCCTGACTAACTACATGGTAAAC 57.954 41.667 0.00 0.00 34.34 2.01
1884 2180 5.107133 CCCTGACTAACTACATGGTAAACG 58.893 45.833 0.00 0.00 0.00 3.60
1889 2185 8.836268 TGACTAACTACATGGTAAACGAAAAT 57.164 30.769 0.00 0.00 0.00 1.82
1947 2249 9.720769 TTTCCTAAAATTGGTAGTACTTCTCAG 57.279 33.333 0.00 0.00 0.00 3.35
1948 2250 8.431910 TCCTAAAATTGGTAGTACTTCTCAGT 57.568 34.615 0.00 0.00 36.99 3.41
1949 2251 8.877195 TCCTAAAATTGGTAGTACTTCTCAGTT 58.123 33.333 0.00 0.00 34.06 3.16
1950 2252 9.152595 CCTAAAATTGGTAGTACTTCTCAGTTC 57.847 37.037 0.00 0.00 34.06 3.01
1951 2253 9.930693 CTAAAATTGGTAGTACTTCTCAGTTCT 57.069 33.333 0.00 0.00 35.06 3.01
1952 2254 8.834749 AAAATTGGTAGTACTTCTCAGTTCTC 57.165 34.615 0.00 0.00 33.06 2.87
1953 2255 7.540474 AATTGGTAGTACTTCTCAGTTCTCA 57.460 36.000 0.00 0.00 33.06 3.27
1958 2260 7.174599 TGGTAGTACTTCTCAGTTCTCACTTAC 59.825 40.741 0.00 0.00 33.06 2.34
2097 2883 9.567848 GTTTTCTTTTCAGTGTATCTTTTGTCA 57.432 29.630 0.00 0.00 0.00 3.58
2107 2893 6.482308 AGTGTATCTTTTGTCACGTTAGCTTT 59.518 34.615 0.00 0.00 36.16 3.51
2148 2934 1.632589 ACTTGTCCAAAAGGGGATGC 58.367 50.000 0.00 0.00 39.62 3.91
2388 3175 6.351711 TGATCCCAATAGTGAATTGTCTGAG 58.648 40.000 0.00 0.00 43.03 3.35
2392 3179 4.878397 CCAATAGTGAATTGTCTGAGACCC 59.122 45.833 10.52 0.00 43.03 4.46
2488 3275 1.207089 CAGGGCCGTATGAGAGAAACA 59.793 52.381 0.00 0.00 0.00 2.83
2534 3321 5.642491 AGATTAGGCCTCGTGTAAAAGAAAC 59.358 40.000 9.68 0.00 0.00 2.78
2645 3547 9.817809 TTTAGAGCACAAACTACTAATCTATGG 57.182 33.333 0.00 0.00 0.00 2.74
2656 3558 8.015185 ACTACTAATCTATGGTTTAGCGGAAA 57.985 34.615 6.78 0.00 31.44 3.13
2786 3699 6.194692 GCATCGATATTTGGTTTTCGAAAGAC 59.805 38.462 10.98 11.66 43.04 3.01
2787 3700 7.464358 CATCGATATTTGGTTTTCGAAAGACT 58.536 34.615 10.98 0.66 43.04 3.24
2796 3709 8.905103 TTGGTTTTCGAAAGACTCTTTTAAAG 57.095 30.769 10.98 0.00 41.84 1.85
2797 3710 7.477494 TGGTTTTCGAAAGACTCTTTTAAAGG 58.523 34.615 10.98 0.00 41.84 3.11
2798 3711 7.121611 TGGTTTTCGAAAGACTCTTTTAAAGGT 59.878 33.333 10.98 2.04 41.84 3.50
2799 3712 7.972277 GGTTTTCGAAAGACTCTTTTAAAGGTT 59.028 33.333 10.98 0.00 41.84 3.50
2801 3714 8.905103 TTTCGAAAGACTCTTTTAAAGGTTTG 57.095 30.769 6.47 0.00 41.84 2.93
2810 3731 8.702163 ACTCTTTTAAAGGTTTGTTGTCAATG 57.298 30.769 4.77 0.00 33.32 2.82
2843 3764 0.171455 GGTCTGGAGTGTGTCGCTAG 59.829 60.000 0.00 0.00 0.00 3.42
2852 3773 4.142447 GGAGTGTGTCGCTAGAGTCATTTA 60.142 45.833 0.00 0.00 0.00 1.40
2865 3786 7.483375 GCTAGAGTCATTTACTGTATATCTGCG 59.517 40.741 0.00 0.00 39.07 5.18
2877 3798 1.647545 TATCTGCGCTTTGGCTGTGC 61.648 55.000 9.73 0.00 40.87 4.57
2939 3860 4.592778 ACAAATTGCACCCTATTTGGTCTT 59.407 37.500 20.24 2.81 43.66 3.01
2947 3868 5.675538 CACCCTATTTGGTCTTCTTCCTAG 58.324 45.833 0.00 0.00 36.12 3.02
2989 3910 8.386264 AGAGTTAGGGGAACATGAATTATATGG 58.614 37.037 0.00 0.00 40.86 2.74
3013 3934 7.583860 GAGTACAACACTCCTTATTCTGTTC 57.416 40.000 0.00 0.00 46.94 3.18
3015 3936 6.929606 AGTACAACACTCCTTATTCTGTTCAC 59.070 38.462 0.00 0.00 28.33 3.18
3016 3937 5.930135 ACAACACTCCTTATTCTGTTCACT 58.070 37.500 0.00 0.00 0.00 3.41
3017 3938 6.357367 ACAACACTCCTTATTCTGTTCACTT 58.643 36.000 0.00 0.00 0.00 3.16
3019 3940 6.867662 ACACTCCTTATTCTGTTCACTTTG 57.132 37.500 0.00 0.00 0.00 2.77
3020 3941 6.591935 ACACTCCTTATTCTGTTCACTTTGA 58.408 36.000 0.00 0.00 0.00 2.69
3023 3944 8.233190 CACTCCTTATTCTGTTCACTTTGATTC 58.767 37.037 0.00 0.00 0.00 2.52
3025 3946 8.327941 TCCTTATTCTGTTCACTTTGATTCTG 57.672 34.615 0.00 0.00 0.00 3.02
3026 3947 7.939039 TCCTTATTCTGTTCACTTTGATTCTGT 59.061 33.333 0.00 0.00 0.00 3.41
3027 3948 8.571336 CCTTATTCTGTTCACTTTGATTCTGTT 58.429 33.333 0.00 0.00 0.00 3.16
3032 3953 8.675705 TCTGTTCACTTTGATTCTGTTAATCA 57.324 30.769 0.00 0.00 35.08 2.57
3033 3954 9.288576 TCTGTTCACTTTGATTCTGTTAATCAT 57.711 29.630 1.56 0.00 36.63 2.45
3034 3955 9.903682 CTGTTCACTTTGATTCTGTTAATCATT 57.096 29.630 1.56 0.00 36.63 2.57
3118 4241 7.488471 TCCAAATTCGTTCGTTGTTTGTAAATT 59.512 29.630 13.36 0.00 0.00 1.82
3350 4473 5.459536 AAGGCTGGATTTCTGAAAACTTC 57.540 39.130 6.95 0.50 0.00 3.01
3389 4512 5.059833 ACTTTGAGTAAAGGTGCTTCTGAG 58.940 41.667 4.96 0.00 46.01 3.35
3495 4618 3.744660 CTGCCTTTCAGTAGAAACCACT 58.255 45.455 0.00 0.00 38.76 4.00
3496 4619 4.137543 CTGCCTTTCAGTAGAAACCACTT 58.862 43.478 0.00 0.00 38.76 3.16
3497 4620 4.532834 TGCCTTTCAGTAGAAACCACTTT 58.467 39.130 0.00 0.00 38.76 2.66
3549 4672 8.454106 GCATAATAGGAGGCTATGTGTTTTATG 58.546 37.037 0.00 0.00 0.00 1.90
3552 4675 8.854614 AATAGGAGGCTATGTGTTTTATGATC 57.145 34.615 0.00 0.00 0.00 2.92
3556 4679 6.017605 GGAGGCTATGTGTTTTATGATCACAG 60.018 42.308 0.00 0.00 43.61 3.66
3618 4741 8.648097 TCGAAGAGACAAAAGAATTTAATCTCG 58.352 33.333 8.74 0.00 46.08 4.04
3629 4752 6.947464 AGAATTTAATCTCGACTTGGAGGAA 58.053 36.000 0.00 0.00 34.74 3.36
3696 4819 8.885722 GTTCATGGTATCATCCTAAAACGTTTA 58.114 33.333 15.03 0.00 0.00 2.01
3719 4842 5.499139 TTCTCAATTGTTCAAGTGGTGAC 57.501 39.130 11.92 0.00 35.39 3.67
3795 4918 6.183360 GCCAAAATCATTGATAAAGCCAACTG 60.183 38.462 0.00 0.00 0.00 3.16
3875 4998 6.238953 GCTTACAGAATGGCATGATCAAGATT 60.239 38.462 0.00 0.00 43.62 2.40
4010 5133 7.784037 TGGCATCATCATTTTATTAAGCTTGT 58.216 30.769 9.86 0.00 0.00 3.16
4087 5244 5.177881 GTGAGCAATTTTTCATGACATGCAA 59.822 36.000 10.76 3.28 34.89 4.08
4089 5246 6.428465 TGAGCAATTTTTCATGACATGCAATT 59.572 30.769 10.76 11.17 34.89 2.32
4109 5266 7.227314 TGCAATTGACATTCTATATGGTCTCAC 59.773 37.037 10.34 0.00 0.00 3.51
4117 5274 3.891977 TCTATATGGTCTCACTGGAGCAC 59.108 47.826 0.00 0.00 44.67 4.40
4180 5337 0.883833 CTTTGCGCCAGAACATCCTT 59.116 50.000 4.18 0.00 0.00 3.36
4181 5338 2.083774 CTTTGCGCCAGAACATCCTTA 58.916 47.619 4.18 0.00 0.00 2.69
4183 5340 1.667236 TGCGCCAGAACATCCTTATG 58.333 50.000 4.18 0.00 39.17 1.90
4330 5487 1.508632 AGACACGGTTGTTTCGGATG 58.491 50.000 0.00 0.00 35.47 3.51
4333 5490 1.222300 CACGGTTGTTTCGGATGTGA 58.778 50.000 0.00 0.00 0.00 3.58
4354 5511 1.761711 TGGGGAAGGTGTTATTGGGA 58.238 50.000 0.00 0.00 0.00 4.37
4459 5616 2.758736 TGGCTTTGTGTTTTGCAGTT 57.241 40.000 0.00 0.00 0.00 3.16
4571 5728 1.595311 TTGTGCCTGGGAGGTATGAT 58.405 50.000 0.00 0.00 37.80 2.45
4611 5768 6.593978 AGTTTCAATCGAGAAAATGAAGTCG 58.406 36.000 1.78 0.00 39.05 4.18
4625 5782 8.911247 AAAATGAAGTCGTTTTATTAGGCATC 57.089 30.769 9.05 0.00 41.66 3.91
4675 5836 1.404047 GCAAGTGTTTGTGTGCCAACT 60.404 47.619 0.00 0.00 36.65 3.16
4683 5844 2.264005 TGTGTGCCAACTAACCGAAT 57.736 45.000 0.00 0.00 0.00 3.34
4769 5940 2.892852 CAGCCAGAAGGAAAACCATTCA 59.107 45.455 0.00 0.00 36.89 2.57
4796 5967 3.706373 TGGCTCCGTTCCCTCTGC 61.706 66.667 0.00 0.00 0.00 4.26
4823 5995 2.166459 CCCGACTACATCTTCTGAGCAA 59.834 50.000 0.00 0.00 0.00 3.91
4846 6018 7.576236 CAATAGTATGTGCACCTAATAACAGC 58.424 38.462 15.69 0.00 0.00 4.40
4852 6024 3.306166 GTGCACCTAATAACAGCGTAGTG 59.694 47.826 5.22 0.00 0.00 2.74
4889 6061 7.055378 ACACCGAACATATCTCTAGTACTCTT 58.945 38.462 0.00 0.00 0.00 2.85
4895 6067 9.116067 GAACATATCTCTAGTACTCTTGTCTGT 57.884 37.037 0.00 0.00 0.00 3.41
4898 6070 5.630661 TCTCTAGTACTCTTGTCTGTTGC 57.369 43.478 0.00 0.00 0.00 4.17
4942 6114 6.978659 GGAGTTGATCTTGTCGATGTAATGTA 59.021 38.462 0.00 0.00 30.84 2.29
4967 6141 1.981256 AAGGACGCAAATGGTTGTCT 58.019 45.000 0.00 0.00 37.06 3.41
4990 6164 1.972978 CCGACCTTCTTCCGGTTCT 59.027 57.895 0.00 0.00 38.55 3.01
4992 6166 1.270678 CCGACCTTCTTCCGGTTCTTT 60.271 52.381 0.00 0.00 38.55 2.52
5048 6222 4.334759 AGCTTGTCTGTTCATATGTGATGC 59.665 41.667 1.90 4.70 33.56 3.91
5062 6244 2.425312 TGTGATGCGAGGTTGTTTGTTT 59.575 40.909 0.00 0.00 0.00 2.83
5063 6245 3.042887 GTGATGCGAGGTTGTTTGTTTC 58.957 45.455 0.00 0.00 0.00 2.78
5091 6273 4.510167 ACATAAGAGGGGATTGTTCCAG 57.490 45.455 0.00 0.00 44.60 3.86
5134 6316 3.356529 AAACAGCAGGGTAGAGAATGG 57.643 47.619 0.00 0.00 0.00 3.16
5135 6317 1.958288 ACAGCAGGGTAGAGAATGGT 58.042 50.000 0.00 0.00 0.00 3.55
5139 6321 2.043227 GCAGGGTAGAGAATGGTAGCT 58.957 52.381 0.00 0.00 0.00 3.32
5156 6338 1.705186 AGCTGTTACCATGGGTGAGTT 59.295 47.619 18.09 1.29 36.19 3.01
5223 6405 4.142988 GGTTTAAACACTGATGCGATCGAA 60.143 41.667 21.57 9.49 0.00 3.71
5236 6418 1.354337 GATCGAAGCGCTGCTGTTCA 61.354 55.000 12.58 0.00 39.62 3.18
5241 6423 1.580845 AAGCGCTGCTGTTCATGACC 61.581 55.000 12.58 0.00 39.62 4.02
5271 6453 3.228453 TCAGTAGGTCATCCGTAATCCC 58.772 50.000 0.00 0.00 39.05 3.85
5331 6513 4.233123 TCACCACTGTACTGTTAGTTCG 57.767 45.455 2.16 0.00 0.00 3.95
5335 6517 3.585862 CACTGTACTGTTAGTTCGGCAT 58.414 45.455 2.16 0.00 0.00 4.40
5339 6521 4.497300 TGTACTGTTAGTTCGGCATTACC 58.503 43.478 0.00 0.00 0.00 2.85
5395 6578 1.079127 GTGTGAGTGGTCCATCGGG 60.079 63.158 0.00 0.00 0.00 5.14
5443 6626 4.509600 GGACAGCAACATAAGCAGATAGAC 59.490 45.833 0.00 0.00 0.00 2.59
5450 6633 6.740960 GCAACATAAGCAGATAGACAGAGGAT 60.741 42.308 0.00 0.00 0.00 3.24
5478 6661 5.985530 TGTCACATCAGTATAATAGCTGTGC 59.014 40.000 0.00 0.00 34.12 4.57
5497 6740 7.972277 AGCTGTGCATTGTCTTTCTATATTTTG 59.028 33.333 0.00 0.00 0.00 2.44
5533 6776 7.598759 TCTACAATCTTCCTATAACCAGGAC 57.401 40.000 0.00 0.00 44.56 3.85
5549 6792 1.157585 GGACGCCTTCCAAAGAACTC 58.842 55.000 0.00 0.00 45.10 3.01
5694 6954 5.334724 ACATGCCAAGGAAATTTGATCTC 57.665 39.130 0.00 0.00 0.00 2.75
5707 6967 3.939740 TTGATCTCAAATCTCCCCCTG 57.060 47.619 0.00 0.00 32.11 4.45
5708 6968 3.135161 TGATCTCAAATCTCCCCCTGA 57.865 47.619 0.00 0.00 0.00 3.86
5739 6999 4.978099 TCATCCTTAAATCAGATCCCAGC 58.022 43.478 0.00 0.00 0.00 4.85
5761 7021 2.301346 GCCATACCATCTTTCTGTGGG 58.699 52.381 0.00 0.00 39.86 4.61
5762 7022 2.092429 GCCATACCATCTTTCTGTGGGA 60.092 50.000 0.00 0.00 39.86 4.37
5763 7023 3.624707 GCCATACCATCTTTCTGTGGGAA 60.625 47.826 0.00 0.00 39.86 3.97
5764 7024 3.947834 CCATACCATCTTTCTGTGGGAAC 59.052 47.826 0.00 0.00 39.86 3.62
5778 7038 1.492764 GGGAACCGGATCCTCTAACA 58.507 55.000 27.91 0.00 40.86 2.41
5779 7039 2.047830 GGGAACCGGATCCTCTAACAT 58.952 52.381 27.91 0.00 40.86 2.71
5780 7040 2.438392 GGGAACCGGATCCTCTAACATT 59.562 50.000 27.91 0.00 40.86 2.71
5781 7041 3.494573 GGGAACCGGATCCTCTAACATTC 60.495 52.174 27.91 7.53 40.86 2.67
5782 7042 3.134081 GGAACCGGATCCTCTAACATTCA 59.866 47.826 22.87 0.00 36.50 2.57
5783 7043 3.821421 ACCGGATCCTCTAACATTCAC 57.179 47.619 9.46 0.00 0.00 3.18
5784 7044 3.104512 ACCGGATCCTCTAACATTCACA 58.895 45.455 9.46 0.00 0.00 3.58
5785 7045 3.517901 ACCGGATCCTCTAACATTCACAA 59.482 43.478 9.46 0.00 0.00 3.33
5786 7046 4.122776 CCGGATCCTCTAACATTCACAAG 58.877 47.826 10.75 0.00 0.00 3.16
5787 7047 4.122776 CGGATCCTCTAACATTCACAAGG 58.877 47.826 10.75 0.00 0.00 3.61
5788 7048 4.141937 CGGATCCTCTAACATTCACAAGGA 60.142 45.833 10.75 0.00 37.33 3.36
5789 7049 5.626809 CGGATCCTCTAACATTCACAAGGAA 60.627 44.000 10.75 0.00 36.56 3.36
5801 7061 4.836125 TCACAAGGAATGTTTGAGAAGC 57.164 40.909 0.00 0.00 41.46 3.86
5802 7062 4.464008 TCACAAGGAATGTTTGAGAAGCT 58.536 39.130 0.00 0.00 41.46 3.74
5803 7063 5.620206 TCACAAGGAATGTTTGAGAAGCTA 58.380 37.500 0.00 0.00 41.46 3.32
5804 7064 5.470098 TCACAAGGAATGTTTGAGAAGCTAC 59.530 40.000 0.00 0.00 41.46 3.58
5805 7065 5.239306 CACAAGGAATGTTTGAGAAGCTACA 59.761 40.000 0.00 0.00 41.46 2.74
5806 7066 5.471456 ACAAGGAATGTTTGAGAAGCTACAG 59.529 40.000 0.00 0.00 40.06 2.74
5807 7067 5.234466 AGGAATGTTTGAGAAGCTACAGT 57.766 39.130 0.00 0.00 0.00 3.55
5808 7068 6.360370 AGGAATGTTTGAGAAGCTACAGTA 57.640 37.500 0.00 0.00 0.00 2.74
5809 7069 6.166982 AGGAATGTTTGAGAAGCTACAGTAC 58.833 40.000 0.00 0.00 0.00 2.73
5810 7070 5.351740 GGAATGTTTGAGAAGCTACAGTACC 59.648 44.000 0.00 0.00 0.00 3.34
5811 7071 4.267349 TGTTTGAGAAGCTACAGTACCC 57.733 45.455 0.00 0.00 0.00 3.69
5812 7072 3.901844 TGTTTGAGAAGCTACAGTACCCT 59.098 43.478 0.00 0.00 0.00 4.34
5813 7073 5.081728 TGTTTGAGAAGCTACAGTACCCTA 58.918 41.667 0.00 0.00 0.00 3.53
5814 7074 5.541101 TGTTTGAGAAGCTACAGTACCCTAA 59.459 40.000 0.00 0.00 0.00 2.69
5815 7075 5.656213 TTGAGAAGCTACAGTACCCTAAC 57.344 43.478 0.00 0.00 0.00 2.34
5816 7076 4.931914 TGAGAAGCTACAGTACCCTAACT 58.068 43.478 0.00 0.00 0.00 2.24
5817 7077 5.331069 TGAGAAGCTACAGTACCCTAACTT 58.669 41.667 0.00 0.00 0.00 2.66
5818 7078 5.778750 TGAGAAGCTACAGTACCCTAACTTT 59.221 40.000 0.00 0.00 0.00 2.66
5819 7079 6.071503 TGAGAAGCTACAGTACCCTAACTTTC 60.072 42.308 0.00 0.00 0.00 2.62
5820 7080 5.187381 AGAAGCTACAGTACCCTAACTTTCC 59.813 44.000 0.00 0.00 0.00 3.13
5821 7081 4.685807 AGCTACAGTACCCTAACTTTCCT 58.314 43.478 0.00 0.00 0.00 3.36
5822 7082 5.092259 AGCTACAGTACCCTAACTTTCCTT 58.908 41.667 0.00 0.00 0.00 3.36
5823 7083 5.187381 AGCTACAGTACCCTAACTTTCCTTC 59.813 44.000 0.00 0.00 0.00 3.46
5824 7084 5.187381 GCTACAGTACCCTAACTTTCCTTCT 59.813 44.000 0.00 0.00 0.00 2.85
5825 7085 6.295745 GCTACAGTACCCTAACTTTCCTTCTT 60.296 42.308 0.00 0.00 0.00 2.52
5826 7086 6.511017 ACAGTACCCTAACTTTCCTTCTTT 57.489 37.500 0.00 0.00 0.00 2.52
5827 7087 6.531923 ACAGTACCCTAACTTTCCTTCTTTC 58.468 40.000 0.00 0.00 0.00 2.62
5828 7088 6.329460 ACAGTACCCTAACTTTCCTTCTTTCT 59.671 38.462 0.00 0.00 0.00 2.52
5829 7089 7.511714 ACAGTACCCTAACTTTCCTTCTTTCTA 59.488 37.037 0.00 0.00 0.00 2.10
5830 7090 8.541234 CAGTACCCTAACTTTCCTTCTTTCTAT 58.459 37.037 0.00 0.00 0.00 1.98
5831 7091 9.113797 AGTACCCTAACTTTCCTTCTTTCTATT 57.886 33.333 0.00 0.00 0.00 1.73
5832 7092 9.381033 GTACCCTAACTTTCCTTCTTTCTATTC 57.619 37.037 0.00 0.00 0.00 1.75
5833 7093 7.985589 ACCCTAACTTTCCTTCTTTCTATTCA 58.014 34.615 0.00 0.00 0.00 2.57
5834 7094 8.615705 ACCCTAACTTTCCTTCTTTCTATTCAT 58.384 33.333 0.00 0.00 0.00 2.57
5927 7187 8.402798 ACTACATACAAACAAATTGATGGTGA 57.597 30.769 0.00 0.00 41.85 4.02
5928 7188 8.855110 ACTACATACAAACAAATTGATGGTGAA 58.145 29.630 0.00 0.00 41.85 3.18
5929 7189 9.689976 CTACATACAAACAAATTGATGGTGAAA 57.310 29.630 0.00 0.00 41.85 2.69
5993 7253 8.165239 TCAACAATAAACAATCTGCTAACAGT 57.835 30.769 0.00 0.00 44.77 3.55
5994 7254 8.289618 TCAACAATAAACAATCTGCTAACAGTC 58.710 33.333 0.00 0.00 44.77 3.51
5995 7255 7.986085 ACAATAAACAATCTGCTAACAGTCT 57.014 32.000 0.00 0.00 44.77 3.24
5996 7256 8.034058 ACAATAAACAATCTGCTAACAGTCTC 57.966 34.615 0.00 0.00 44.77 3.36
5997 7257 7.880195 ACAATAAACAATCTGCTAACAGTCTCT 59.120 33.333 0.00 0.00 44.77 3.10
5998 7258 9.371136 CAATAAACAATCTGCTAACAGTCTCTA 57.629 33.333 0.00 0.00 44.77 2.43
5999 7259 9.944376 AATAAACAATCTGCTAACAGTCTCTAA 57.056 29.630 0.00 0.00 44.77 2.10
6000 7260 7.659652 AAACAATCTGCTAACAGTCTCTAAC 57.340 36.000 0.00 0.00 44.77 2.34
6001 7261 6.597832 ACAATCTGCTAACAGTCTCTAACT 57.402 37.500 0.00 0.00 44.77 2.24
6002 7262 6.998802 ACAATCTGCTAACAGTCTCTAACTT 58.001 36.000 0.00 0.00 44.77 2.66
6003 7263 7.445945 ACAATCTGCTAACAGTCTCTAACTTT 58.554 34.615 0.00 0.00 44.77 2.66
6004 7264 7.600752 ACAATCTGCTAACAGTCTCTAACTTTC 59.399 37.037 0.00 0.00 44.77 2.62
6005 7265 6.026947 TCTGCTAACAGTCTCTAACTTTCC 57.973 41.667 0.00 0.00 44.77 3.13
6006 7266 5.775701 TCTGCTAACAGTCTCTAACTTTCCT 59.224 40.000 0.00 0.00 44.77 3.36
6007 7267 6.267928 TCTGCTAACAGTCTCTAACTTTCCTT 59.732 38.462 0.00 0.00 44.77 3.36
6008 7268 6.456501 TGCTAACAGTCTCTAACTTTCCTTC 58.543 40.000 0.00 0.00 35.45 3.46
6009 7269 6.267928 TGCTAACAGTCTCTAACTTTCCTTCT 59.732 38.462 0.00 0.00 35.45 2.85
6010 7270 7.156000 GCTAACAGTCTCTAACTTTCCTTCTT 58.844 38.462 0.00 0.00 35.45 2.52
6011 7271 7.117092 GCTAACAGTCTCTAACTTTCCTTCTTG 59.883 40.741 0.00 0.00 35.45 3.02
6012 7272 5.859495 ACAGTCTCTAACTTTCCTTCTTGG 58.141 41.667 0.00 0.00 35.45 3.61
6013 7273 5.602978 ACAGTCTCTAACTTTCCTTCTTGGA 59.397 40.000 0.00 0.00 38.65 3.53
6014 7274 6.271159 ACAGTCTCTAACTTTCCTTCTTGGAT 59.729 38.462 0.00 0.00 39.63 3.41
6015 7275 7.164803 CAGTCTCTAACTTTCCTTCTTGGATT 58.835 38.462 0.00 0.00 39.63 3.01
6016 7276 7.663493 CAGTCTCTAACTTTCCTTCTTGGATTT 59.337 37.037 0.00 0.00 39.63 2.17
6017 7277 8.881262 AGTCTCTAACTTTCCTTCTTGGATTTA 58.119 33.333 0.00 0.00 45.68 1.40
6018 7278 8.937884 GTCTCTAACTTTCCTTCTTGGATTTAC 58.062 37.037 0.00 0.00 45.68 2.01
6019 7279 8.656806 TCTCTAACTTTCCTTCTTGGATTTACA 58.343 33.333 0.00 0.00 45.68 2.41
6020 7280 8.617290 TCTAACTTTCCTTCTTGGATTTACAC 57.383 34.615 0.00 0.00 45.68 2.90
6021 7281 8.437575 TCTAACTTTCCTTCTTGGATTTACACT 58.562 33.333 0.00 0.00 45.68 3.55
6022 7282 9.720769 CTAACTTTCCTTCTTGGATTTACACTA 57.279 33.333 0.00 0.00 45.68 2.74
6023 7283 8.622948 AACTTTCCTTCTTGGATTTACACTAG 57.377 34.615 0.00 0.00 45.68 2.57
6024 7284 7.974504 ACTTTCCTTCTTGGATTTACACTAGA 58.025 34.615 0.00 0.00 45.68 2.43
6025 7285 7.878644 ACTTTCCTTCTTGGATTTACACTAGAC 59.121 37.037 0.00 0.00 45.68 2.59
6026 7286 7.554959 TTCCTTCTTGGATTTACACTAGACT 57.445 36.000 0.00 0.00 45.68 3.24
6027 7287 8.660295 TTCCTTCTTGGATTTACACTAGACTA 57.340 34.615 0.00 0.00 45.68 2.59
6028 7288 8.294954 TCCTTCTTGGATTTACACTAGACTAG 57.705 38.462 8.00 8.00 40.56 2.57
6029 7289 6.981559 CCTTCTTGGATTTACACTAGACTAGC 59.018 42.308 9.52 0.00 38.35 3.42
6030 7290 7.363880 CCTTCTTGGATTTACACTAGACTAGCA 60.364 40.741 9.52 0.00 38.35 3.49
6031 7291 7.661536 TCTTGGATTTACACTAGACTAGCAT 57.338 36.000 9.52 0.63 0.00 3.79
6032 7292 8.079211 TCTTGGATTTACACTAGACTAGCATT 57.921 34.615 9.52 0.00 0.00 3.56
6033 7293 7.981789 TCTTGGATTTACACTAGACTAGCATTG 59.018 37.037 9.52 3.47 0.00 2.82
6034 7294 7.182817 TGGATTTACACTAGACTAGCATTGT 57.817 36.000 9.52 9.05 0.00 2.71
6035 7295 8.301252 TGGATTTACACTAGACTAGCATTGTA 57.699 34.615 9.52 8.13 0.00 2.41
6036 7296 8.414003 TGGATTTACACTAGACTAGCATTGTAG 58.586 37.037 9.52 0.00 0.00 2.74
6037 7297 7.382759 GGATTTACACTAGACTAGCATTGTAGC 59.617 40.741 9.52 5.16 0.00 3.58
6038 7298 6.769134 TTACACTAGACTAGCATTGTAGCA 57.231 37.500 9.52 0.00 36.85 3.49
6039 7299 5.860941 ACACTAGACTAGCATTGTAGCAT 57.139 39.130 9.52 0.00 36.85 3.79
6040 7300 5.595885 ACACTAGACTAGCATTGTAGCATG 58.404 41.667 9.52 0.00 36.85 4.06
6041 7301 4.987285 CACTAGACTAGCATTGTAGCATGG 59.013 45.833 9.52 0.00 36.85 3.66
6042 7302 4.651503 ACTAGACTAGCATTGTAGCATGGT 59.348 41.667 9.52 1.62 36.85 3.55
6043 7303 3.801698 AGACTAGCATTGTAGCATGGTG 58.198 45.455 7.89 0.00 36.85 4.17
6044 7304 3.452264 AGACTAGCATTGTAGCATGGTGA 59.548 43.478 7.89 0.00 36.85 4.02
6045 7305 3.535561 ACTAGCATTGTAGCATGGTGAC 58.464 45.455 7.89 2.84 36.85 3.67
6046 7306 2.795231 AGCATTGTAGCATGGTGACT 57.205 45.000 7.89 0.00 36.85 3.41
6047 7307 3.077484 AGCATTGTAGCATGGTGACTT 57.923 42.857 7.89 0.00 36.85 3.01
6048 7308 3.424703 AGCATTGTAGCATGGTGACTTT 58.575 40.909 7.89 0.00 36.85 2.66
6049 7309 3.441572 AGCATTGTAGCATGGTGACTTTC 59.558 43.478 7.89 0.00 36.85 2.62
6050 7310 3.428045 GCATTGTAGCATGGTGACTTTCC 60.428 47.826 7.89 0.00 0.00 3.13
6051 7311 3.788227 TTGTAGCATGGTGACTTTCCT 57.212 42.857 7.89 0.00 0.00 3.36
6052 7312 3.788227 TGTAGCATGGTGACTTTCCTT 57.212 42.857 7.89 0.00 0.00 3.36
6053 7313 3.411446 TGTAGCATGGTGACTTTCCTTG 58.589 45.455 7.89 0.00 34.55 3.61
6054 7314 2.664402 AGCATGGTGACTTTCCTTGT 57.336 45.000 0.00 0.00 34.13 3.16
6055 7315 2.233271 AGCATGGTGACTTTCCTTGTG 58.767 47.619 0.00 0.00 34.13 3.33
6056 7316 2.158623 AGCATGGTGACTTTCCTTGTGA 60.159 45.455 0.00 0.00 34.13 3.58
6057 7317 2.622942 GCATGGTGACTTTCCTTGTGAA 59.377 45.455 0.00 0.00 34.13 3.18
6058 7318 3.256631 GCATGGTGACTTTCCTTGTGAAT 59.743 43.478 0.00 0.00 34.13 2.57
6059 7319 4.801891 CATGGTGACTTTCCTTGTGAATG 58.198 43.478 0.00 0.00 34.98 2.67
6060 7320 3.897239 TGGTGACTTTCCTTGTGAATGT 58.103 40.909 0.00 0.00 42.29 2.71
6061 7321 4.277476 TGGTGACTTTCCTTGTGAATGTT 58.723 39.130 0.00 0.00 40.37 2.71
6062 7322 5.441500 TGGTGACTTTCCTTGTGAATGTTA 58.558 37.500 0.00 0.00 40.37 2.41
6063 7323 5.530915 TGGTGACTTTCCTTGTGAATGTTAG 59.469 40.000 0.00 0.00 40.37 2.34
6064 7324 5.763204 GGTGACTTTCCTTGTGAATGTTAGA 59.237 40.000 0.00 0.00 40.37 2.10
6065 7325 6.073003 GGTGACTTTCCTTGTGAATGTTAGAG 60.073 42.308 0.00 0.00 40.37 2.43
6066 7326 5.997746 TGACTTTCCTTGTGAATGTTAGAGG 59.002 40.000 0.00 0.00 40.37 3.69
6067 7327 6.183361 TGACTTTCCTTGTGAATGTTAGAGGA 60.183 38.462 0.00 0.00 40.37 3.71
6068 7328 6.784031 ACTTTCCTTGTGAATGTTAGAGGAT 58.216 36.000 0.00 0.00 37.93 3.24
6069 7329 6.881602 ACTTTCCTTGTGAATGTTAGAGGATC 59.118 38.462 0.00 0.00 37.93 3.36
6070 7330 5.359194 TCCTTGTGAATGTTAGAGGATCC 57.641 43.478 2.48 2.48 33.66 3.36
6071 7331 4.122776 CCTTGTGAATGTTAGAGGATCCG 58.877 47.826 5.98 0.00 33.66 4.18
6072 7332 3.819564 TGTGAATGTTAGAGGATCCGG 57.180 47.619 5.98 0.00 33.66 5.14
6073 7333 3.104512 TGTGAATGTTAGAGGATCCGGT 58.895 45.455 5.98 0.00 33.66 5.28
6074 7334 3.517901 TGTGAATGTTAGAGGATCCGGTT 59.482 43.478 5.98 0.00 33.66 4.44
6075 7335 4.120589 GTGAATGTTAGAGGATCCGGTTC 58.879 47.826 5.98 1.67 33.66 3.62
6076 7336 3.134081 TGAATGTTAGAGGATCCGGTTCC 59.866 47.826 22.05 22.05 33.66 3.62
6077 7337 1.492764 TGTTAGAGGATCCGGTTCCC 58.507 55.000 25.10 17.15 36.35 3.97
6078 7338 1.007963 TGTTAGAGGATCCGGTTCCCT 59.992 52.381 25.10 22.14 36.35 4.20
6079 7339 2.117051 GTTAGAGGATCCGGTTCCCTT 58.883 52.381 25.10 16.76 36.35 3.95
6080 7340 2.504585 GTTAGAGGATCCGGTTCCCTTT 59.495 50.000 25.10 15.43 36.35 3.11
6081 7341 1.205055 AGAGGATCCGGTTCCCTTTC 58.795 55.000 25.10 17.10 36.35 2.62
6082 7342 1.205055 GAGGATCCGGTTCCCTTTCT 58.795 55.000 25.10 8.79 36.35 2.52
6083 7343 0.912486 AGGATCCGGTTCCCTTTCTG 59.088 55.000 25.10 0.00 36.35 3.02
6084 7344 0.618981 GGATCCGGTTCCCTTTCTGT 59.381 55.000 19.41 0.00 0.00 3.41
6085 7345 1.679032 GGATCCGGTTCCCTTTCTGTG 60.679 57.143 19.41 0.00 0.00 3.66
6086 7346 0.328258 ATCCGGTTCCCTTTCTGTGG 59.672 55.000 0.00 0.00 0.00 4.17
6087 7347 1.057851 TCCGGTTCCCTTTCTGTGGT 61.058 55.000 0.00 0.00 0.00 4.16
6088 7348 0.889186 CCGGTTCCCTTTCTGTGGTG 60.889 60.000 0.00 0.00 0.00 4.17
6089 7349 0.107831 CGGTTCCCTTTCTGTGGTGA 59.892 55.000 0.00 0.00 0.00 4.02
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
110 111 1.279271 ACTCTCATCCCCAAGAAACCG 59.721 52.381 0.00 0.00 0.00 4.44
454 455 2.985957 TGGCGATCAGATCATCACAA 57.014 45.000 11.12 0.00 0.00 3.33
594 595 2.334946 GGCTGGCATCGCTTGAACA 61.335 57.895 0.00 0.00 0.00 3.18
761 762 9.026121 AGTATGCACCGTCTCTATAAATTCTAT 57.974 33.333 0.00 0.00 0.00 1.98
762 763 8.405418 AGTATGCACCGTCTCTATAAATTCTA 57.595 34.615 0.00 0.00 0.00 2.10
763 764 7.291411 AGTATGCACCGTCTCTATAAATTCT 57.709 36.000 0.00 0.00 0.00 2.40
764 765 9.640963 AATAGTATGCACCGTCTCTATAAATTC 57.359 33.333 0.00 0.00 0.00 2.17
765 766 9.640963 GAATAGTATGCACCGTCTCTATAAATT 57.359 33.333 0.00 0.00 0.00 1.82
766 767 8.251721 GGAATAGTATGCACCGTCTCTATAAAT 58.748 37.037 0.00 0.00 0.00 1.40
767 768 7.309621 GGGAATAGTATGCACCGTCTCTATAAA 60.310 40.741 0.00 0.00 0.00 1.40
768 769 6.152323 GGGAATAGTATGCACCGTCTCTATAA 59.848 42.308 0.00 0.00 0.00 0.98
769 770 5.651139 GGGAATAGTATGCACCGTCTCTATA 59.349 44.000 0.00 0.00 0.00 1.31
770 771 4.463186 GGGAATAGTATGCACCGTCTCTAT 59.537 45.833 0.00 0.00 0.00 1.98
771 772 3.825014 GGGAATAGTATGCACCGTCTCTA 59.175 47.826 0.00 0.00 0.00 2.43
772 773 2.628657 GGGAATAGTATGCACCGTCTCT 59.371 50.000 0.00 0.00 0.00 3.10
773 774 2.364324 TGGGAATAGTATGCACCGTCTC 59.636 50.000 0.00 0.00 0.00 3.36
774 775 2.102588 GTGGGAATAGTATGCACCGTCT 59.897 50.000 0.00 0.00 0.00 4.18
775 776 2.102588 AGTGGGAATAGTATGCACCGTC 59.897 50.000 0.00 0.00 0.00 4.79
776 777 2.116238 AGTGGGAATAGTATGCACCGT 58.884 47.619 0.00 0.00 0.00 4.83
777 778 2.910688 AGTGGGAATAGTATGCACCG 57.089 50.000 0.00 0.00 0.00 4.94
778 779 8.759782 ACTATATAAGTGGGAATAGTATGCACC 58.240 37.037 0.00 0.00 36.93 5.01
801 802 9.933723 GAGTAATTGGTCCTACAAAGTTTACTA 57.066 33.333 0.00 0.00 35.48 1.82
802 803 8.434392 TGAGTAATTGGTCCTACAAAGTTTACT 58.566 33.333 0.00 0.00 36.84 2.24
803 804 8.611654 TGAGTAATTGGTCCTACAAAGTTTAC 57.388 34.615 0.00 0.00 33.48 2.01
804 805 9.802039 AATGAGTAATTGGTCCTACAAAGTTTA 57.198 29.630 0.00 0.00 33.48 2.01
805 806 8.706322 AATGAGTAATTGGTCCTACAAAGTTT 57.294 30.769 0.00 0.00 33.48 2.66
806 807 9.802039 TTAATGAGTAATTGGTCCTACAAAGTT 57.198 29.630 0.00 0.00 33.48 2.66
807 808 9.802039 TTTAATGAGTAATTGGTCCTACAAAGT 57.198 29.630 0.00 0.00 33.48 2.66
817 818 9.567848 CGCAAGTTTATTTAATGAGTAATTGGT 57.432 29.630 0.00 0.00 0.00 3.67
838 839 8.417157 ATTTCGGCCAAATGATATTTACGCAAG 61.417 37.037 2.24 0.00 36.95 4.01
839 840 3.628032 TCGGCCAAATGATATTTACGCAA 59.372 39.130 2.24 0.00 0.00 4.85
840 841 3.206964 TCGGCCAAATGATATTTACGCA 58.793 40.909 2.24 0.00 0.00 5.24
841 842 3.889196 TCGGCCAAATGATATTTACGC 57.111 42.857 2.24 0.00 0.00 4.42
842 843 7.433719 TGAAATTTCGGCCAAATGATATTTACG 59.566 33.333 13.34 0.00 34.69 3.18
843 844 8.641499 TGAAATTTCGGCCAAATGATATTTAC 57.359 30.769 13.34 1.53 34.69 2.01
866 867 5.461032 AAAAATGGGTTTTGAGCGTATGA 57.539 34.783 0.00 0.00 38.04 2.15
980 984 1.613630 GTGGAGGGGAAGGCAGAGA 60.614 63.158 0.00 0.00 0.00 3.10
1014 1022 0.804989 GGATTTTGGCGGTGTCAGAG 59.195 55.000 0.00 0.00 0.00 3.35
1087 1095 0.620556 GTCCCTCCATGCTCTCCAAA 59.379 55.000 0.00 0.00 0.00 3.28
1299 1307 2.159028 GGGAAAGGAACGAGGAGATCAG 60.159 54.545 0.00 0.00 0.00 2.90
1333 1341 4.497473 TCTTAATTCTTGTGTTTGGGCG 57.503 40.909 0.00 0.00 0.00 6.13
1362 1370 2.030185 ACGAAGCGGCAGATCGTATATT 60.030 45.455 21.25 2.96 46.86 1.28
1393 1401 1.375523 CCAGGTTCCACGCCAGTAC 60.376 63.158 0.00 0.00 0.00 2.73
1394 1402 0.907704 ATCCAGGTTCCACGCCAGTA 60.908 55.000 0.00 0.00 0.00 2.74
1395 1403 2.224159 ATCCAGGTTCCACGCCAGT 61.224 57.895 0.00 0.00 0.00 4.00
1396 1404 1.746615 CATCCAGGTTCCACGCCAG 60.747 63.158 0.00 0.00 0.00 4.85
1397 1405 2.350895 CATCCAGGTTCCACGCCA 59.649 61.111 0.00 0.00 0.00 5.69
1398 1406 3.134127 GCATCCAGGTTCCACGCC 61.134 66.667 0.00 0.00 0.00 5.68
1400 1408 1.200020 GAAAAGCATCCAGGTTCCACG 59.800 52.381 0.00 0.00 36.83 4.94
1408 1416 7.820648 ACAATACAAGTAAGAAAAGCATCCAG 58.179 34.615 0.00 0.00 0.00 3.86
1438 1447 1.608590 CCGCACCAAAGAATTCACAGT 59.391 47.619 8.44 0.00 0.00 3.55
1439 1448 1.068333 CCCGCACCAAAGAATTCACAG 60.068 52.381 8.44 0.00 0.00 3.66
1508 1520 6.201425 ACGTTAGTTCTTTGAATTCGCAGTAA 59.799 34.615 0.04 0.00 0.00 2.24
1514 1526 7.427030 TGAAAACACGTTAGTTCTTTGAATTCG 59.573 33.333 0.04 0.00 0.00 3.34
1530 1542 2.869897 ACGTTTGCAATGAAAACACGT 58.130 38.095 16.30 15.36 37.37 4.49
1599 1611 0.979665 CAAGAAGGACTGAGCAGGGA 59.020 55.000 2.20 0.00 0.00 4.20
1682 1701 9.904198 TTCTGATTTATCATCTGTTTGGTCATA 57.096 29.630 0.00 0.00 36.02 2.15
1748 1767 5.052481 ACTTTCGACACACCTAACCTTAAC 58.948 41.667 0.00 0.00 0.00 2.01
1785 2080 8.921353 AAAACTAGTTCTACAGAGTCTACAGA 57.079 34.615 8.95 0.00 0.00 3.41
1924 2226 9.152595 GAACTGAGAAGTACTACCAATTTTAGG 57.847 37.037 0.00 0.00 0.00 2.69
1982 2768 2.851195 ACTTCATCCACACAAGGACAC 58.149 47.619 0.00 0.00 41.30 3.67
2097 2883 7.744715 CGAAAAATAATGACAGAAAGCTAACGT 59.255 33.333 0.00 0.00 0.00 3.99
2107 2893 9.672086 CAAGTTAAACCGAAAAATAATGACAGA 57.328 29.630 0.00 0.00 0.00 3.41
2388 3175 7.039270 ACATGTAAAAGTTGAAAGTTTGGGTC 58.961 34.615 0.00 0.00 32.20 4.46
2392 3179 7.696453 AGACGACATGTAAAAGTTGAAAGTTTG 59.304 33.333 0.00 0.00 32.20 2.93
2480 3267 2.224305 CCAACGGGACTCTTGTTTCTCT 60.224 50.000 0.00 0.00 35.59 3.10
2623 3410 8.494016 AAACCATAGATTAGTAGTTTGTGCTC 57.506 34.615 0.00 0.00 0.00 4.26
2629 3416 8.015185 TCCGCTAAACCATAGATTAGTAGTTT 57.985 34.615 0.00 0.00 32.82 2.66
2645 3547 3.689649 AGGATGTCACATTTCCGCTAAAC 59.310 43.478 0.00 0.00 34.61 2.01
2656 3558 3.259123 GGAAAGCCAAAAGGATGTCACAT 59.741 43.478 0.00 0.00 0.00 3.21
2786 3699 8.702163 ACATTGACAACAAACCTTTAAAAGAG 57.298 30.769 0.00 0.00 39.54 2.85
2793 3706 8.691797 ACTGTAATACATTGACAACAAACCTTT 58.308 29.630 0.00 0.00 39.54 3.11
2796 3709 7.081976 GGACTGTAATACATTGACAACAAACC 58.918 38.462 0.00 0.00 39.54 3.27
2797 3710 7.644490 TGGACTGTAATACATTGACAACAAAC 58.356 34.615 0.00 0.00 39.54 2.93
2798 3711 7.040755 CCTGGACTGTAATACATTGACAACAAA 60.041 37.037 0.00 0.00 39.54 2.83
2799 3712 6.429692 CCTGGACTGTAATACATTGACAACAA 59.570 38.462 0.00 0.00 40.42 2.83
2801 3714 5.354234 CCCTGGACTGTAATACATTGACAAC 59.646 44.000 0.00 0.00 0.00 3.32
2843 3764 6.153067 AGCGCAGATATACAGTAAATGACTC 58.847 40.000 11.47 0.00 35.64 3.36
2852 3773 2.158900 AGCCAAAGCGCAGATATACAGT 60.159 45.455 11.47 0.00 46.67 3.55
2865 3786 2.437200 TTGTATTGCACAGCCAAAGC 57.563 45.000 0.00 0.00 38.72 3.51
2912 3833 5.012975 ACCAAATAGGGTGCAATTTGTCAAT 59.987 36.000 16.49 1.92 43.89 2.57
2939 3860 4.207165 AGTTTTTGCAGTTGCTAGGAAGA 58.793 39.130 0.00 0.00 42.66 2.87
2947 3868 5.915196 CCTAACTCTTAGTTTTTGCAGTTGC 59.085 40.000 0.00 0.00 39.51 4.17
3048 3969 5.448496 GCGAGCACAATCAATAACATAACCA 60.448 40.000 0.00 0.00 0.00 3.67
3053 3974 3.691118 ACAGCGAGCACAATCAATAACAT 59.309 39.130 0.00 0.00 0.00 2.71
3220 4343 7.945033 TCCTGAAAAATTGATTACAGTTTGC 57.055 32.000 0.00 0.00 36.38 3.68
3332 4455 5.072741 TCAGGGAAGTTTTCAGAAATCCAG 58.927 41.667 13.72 7.48 29.28 3.86
3389 4512 4.039004 TCTTCTGCTGATCTTATCTGAGCC 59.961 45.833 0.00 0.00 29.84 4.70
3487 4610 3.120304 GCGTACATCCTCAAAGTGGTTTC 60.120 47.826 0.00 0.00 0.00 2.78
3492 4615 2.352651 CCATGCGTACATCCTCAAAGTG 59.647 50.000 0.00 0.00 32.87 3.16
3493 4616 2.632377 CCATGCGTACATCCTCAAAGT 58.368 47.619 0.00 0.00 32.87 2.66
3494 4617 1.331756 GCCATGCGTACATCCTCAAAG 59.668 52.381 0.00 0.00 32.87 2.77
3495 4618 1.065491 AGCCATGCGTACATCCTCAAA 60.065 47.619 0.00 0.00 32.87 2.69
3496 4619 0.541392 AGCCATGCGTACATCCTCAA 59.459 50.000 0.00 0.00 32.87 3.02
3497 4620 0.104855 GAGCCATGCGTACATCCTCA 59.895 55.000 0.00 0.00 34.26 3.86
3549 4672 5.149273 CAAGTGCACATTTACACTGTGATC 58.851 41.667 21.04 0.00 46.17 2.92
3552 4675 4.201901 TGACAAGTGCACATTTACACTGTG 60.202 41.667 21.04 6.19 46.17 3.66
3556 4679 5.180117 AGAGATGACAAGTGCACATTTACAC 59.820 40.000 21.04 5.56 37.05 2.90
3618 4741 3.403968 GAAGACCTTGTTCCTCCAAGTC 58.596 50.000 0.00 0.00 40.17 3.01
3696 4819 5.010012 GGTCACCACTTGAACAATTGAGAAT 59.990 40.000 13.59 0.00 42.20 2.40
3795 4918 4.225942 TCCATCTTGGGGCATATCACTATC 59.774 45.833 0.00 0.00 38.32 2.08
3875 4998 2.180017 GACGTCTTAAGCGGGCGA 59.820 61.111 18.82 0.00 0.00 5.54
4010 5133 7.013178 TGCAAGTGATGAATAAGAACAGTCAAA 59.987 33.333 0.00 0.00 0.00 2.69
4069 5226 7.731882 TGTCAATTGCATGTCATGAAAAATT 57.268 28.000 17.24 14.19 30.03 1.82
4087 5244 7.290948 TCCAGTGAGACCATATAGAATGTCAAT 59.709 37.037 0.00 0.00 0.00 2.57
4089 5246 6.136155 TCCAGTGAGACCATATAGAATGTCA 58.864 40.000 0.00 0.00 0.00 3.58
4117 5274 2.022195 CCATCAGAAATGTCAGCCCAG 58.978 52.381 0.00 0.00 0.00 4.45
4158 5315 1.160137 GATGTTCTGGCGCAAAGACT 58.840 50.000 10.83 0.00 0.00 3.24
4166 5323 1.597742 CCCATAAGGATGTTCTGGCG 58.402 55.000 0.00 0.00 38.24 5.69
4192 5349 1.873903 GCTGTACAGATATGTGCCCGG 60.874 57.143 27.08 0.00 0.00 5.73
4193 5350 1.069204 AGCTGTACAGATATGTGCCCG 59.931 52.381 27.08 0.00 0.00 6.13
4201 5358 4.082190 GCGGATGGAATAGCTGTACAGATA 60.082 45.833 27.08 24.54 33.47 1.98
4257 5414 3.570125 GCTGGCAGGAAGAAAAGTAAACT 59.430 43.478 17.64 0.00 0.00 2.66
4330 5487 3.447229 CCAATAACACCTTCCCCATTCAC 59.553 47.826 0.00 0.00 0.00 3.18
4333 5490 2.657459 TCCCAATAACACCTTCCCCATT 59.343 45.455 0.00 0.00 0.00 3.16
4354 5511 5.332743 TCCTTTTTGATTCCAGCATACCTT 58.667 37.500 0.00 0.00 0.00 3.50
4459 5616 4.403734 CTGCCCTGGTAAAAGTAAAGGAA 58.596 43.478 0.00 0.00 0.00 3.36
4544 5701 2.493278 CCTCCCAGGCACAAATGTAAAG 59.507 50.000 0.00 0.00 0.00 1.85
4571 5728 8.712363 CGATTGAAACTTCTCTTGTGAATTAGA 58.288 33.333 0.00 0.00 0.00 2.10
4625 5782 4.370364 AACAAACACAGTTTGGCTACAG 57.630 40.909 22.12 1.19 33.92 2.74
4698 5869 2.995939 TCAGATCACGCATCAACAGAAC 59.004 45.455 0.00 0.00 33.29 3.01
4742 5913 0.110486 TTTCCTTCTGGCTGGGTCAC 59.890 55.000 0.00 0.00 0.00 3.67
4796 5967 4.398358 TCAGAAGATGTAGTCGGGTACTTG 59.602 45.833 0.00 0.00 39.80 3.16
4823 5995 5.926542 CGCTGTTATTAGGTGCACATACTAT 59.073 40.000 20.43 9.93 0.00 2.12
4846 6018 3.985925 GGTGTTTCTACCAAGACACTACG 59.014 47.826 5.59 0.00 40.54 3.51
4852 6024 3.460103 TGTTCGGTGTTTCTACCAAGAC 58.540 45.455 0.00 0.00 40.89 3.01
4889 6061 2.565210 CAACTTTGCTGCAACAGACA 57.435 45.000 15.72 0.00 32.44 3.41
4915 6087 3.589988 ACATCGACAAGATCAACTCCAC 58.410 45.455 0.00 0.00 37.52 4.02
4942 6114 4.098807 ACAACCATTTGCGTCCTTTAGTTT 59.901 37.500 0.00 0.00 36.00 2.66
4967 6141 2.358247 GGAAGAAGGTCGGCGCAA 60.358 61.111 10.83 0.00 0.00 4.85
4990 6164 0.480690 TCCTTTAGGGCCACAGCAAA 59.519 50.000 6.18 0.00 42.56 3.68
4992 6166 0.704076 ATTCCTTTAGGGCCACAGCA 59.296 50.000 6.18 0.00 42.56 4.41
5048 6222 1.666700 TCACCGAAACAAACAACCTCG 59.333 47.619 0.00 0.00 0.00 4.63
5062 6244 2.542550 TCCCCTCTTATGTTTCACCGA 58.457 47.619 0.00 0.00 0.00 4.69
5063 6245 3.560636 ATCCCCTCTTATGTTTCACCG 57.439 47.619 0.00 0.00 0.00 4.94
5091 6273 2.618709 CACTGACAAAAGAGGTGTTCCC 59.381 50.000 0.00 0.00 0.00 3.97
5097 6279 4.142381 GCTGTTTTCACTGACAAAAGAGGT 60.142 41.667 0.00 0.00 35.60 3.85
5147 6329 0.106769 TTCTTGCAGCAACTCACCCA 60.107 50.000 2.83 0.00 0.00 4.51
5223 6405 2.037136 GGTCATGAACAGCAGCGCT 61.037 57.895 2.64 2.64 40.77 5.92
5236 6418 2.612972 CCTACTGAAACAGCACGGTCAT 60.613 50.000 0.00 0.00 34.37 3.06
5241 6423 2.148916 TGACCTACTGAAACAGCACG 57.851 50.000 0.00 0.00 34.37 5.34
5271 6453 5.747565 ACATTACAAACGAACATCAGTGTG 58.252 37.500 0.00 0.00 38.92 3.82
5319 6501 4.221262 ACAGGTAATGCCGAACTAACAGTA 59.779 41.667 0.00 0.00 43.70 2.74
5331 6513 4.718940 ACTTTGCAATACAGGTAATGCC 57.281 40.909 14.89 1.07 40.31 4.40
5335 6517 7.759489 AAGATCAACTTTGCAATACAGGTAA 57.241 32.000 0.00 0.00 34.94 2.85
5339 6521 7.917505 GGGATAAAGATCAACTTTGCAATACAG 59.082 37.037 0.00 0.00 46.62 2.74
5374 6557 0.318441 CGATGGACCACTCACACTGT 59.682 55.000 0.00 0.00 0.00 3.55
5395 6578 0.663568 AGTGAAGCACGCACGTCTAC 60.664 55.000 0.00 0.00 41.04 2.59
5420 6603 4.509600 GTCTATCTGCTTATGTTGCTGTCC 59.490 45.833 0.00 0.00 0.00 4.02
5450 6633 7.068716 ACAGCTATTATACTGATGTGACAGACA 59.931 37.037 0.00 0.00 40.63 3.41
5533 6776 1.160137 CTGGAGTTCTTTGGAAGGCG 58.840 55.000 0.00 0.00 31.46 5.52
5549 6792 4.240096 GTTGCATCAAAACCTGATTCTGG 58.760 43.478 7.96 7.96 42.46 3.86
5694 6954 0.394899 GGCTGTCAGGGGGAGATTTG 60.395 60.000 1.14 0.00 0.00 2.32
5700 6960 0.044092 TGATAAGGCTGTCAGGGGGA 59.956 55.000 1.14 0.00 0.00 4.81
5701 6961 1.072965 GATGATAAGGCTGTCAGGGGG 59.927 57.143 1.14 0.00 0.00 5.40
5702 6962 1.072965 GGATGATAAGGCTGTCAGGGG 59.927 57.143 1.14 0.00 0.00 4.79
5707 6967 7.220030 TCTGATTTAAGGATGATAAGGCTGTC 58.780 38.462 0.00 0.00 0.00 3.51
5708 6968 7.141758 TCTGATTTAAGGATGATAAGGCTGT 57.858 36.000 0.00 0.00 0.00 4.40
5739 6999 2.947652 CCACAGAAAGATGGTATGGCAG 59.052 50.000 0.00 0.00 0.00 4.85
5761 7021 4.120589 GTGAATGTTAGAGGATCCGGTTC 58.879 47.826 5.98 1.67 33.66 3.62
5762 7022 3.517901 TGTGAATGTTAGAGGATCCGGTT 59.482 43.478 5.98 0.00 33.66 4.44
5763 7023 3.104512 TGTGAATGTTAGAGGATCCGGT 58.895 45.455 5.98 0.00 33.66 5.28
5764 7024 3.819564 TGTGAATGTTAGAGGATCCGG 57.180 47.619 5.98 0.00 33.66 5.14
5765 7025 4.122776 CCTTGTGAATGTTAGAGGATCCG 58.877 47.826 5.98 0.00 33.66 4.18
5766 7026 5.359194 TCCTTGTGAATGTTAGAGGATCC 57.641 43.478 2.48 2.48 33.66 3.36
5778 7038 5.537674 AGCTTCTCAAACATTCCTTGTGAAT 59.462 36.000 0.00 0.00 44.67 2.57
5779 7039 4.889409 AGCTTCTCAAACATTCCTTGTGAA 59.111 37.500 0.00 0.00 38.99 3.18
5780 7040 4.464008 AGCTTCTCAAACATTCCTTGTGA 58.536 39.130 0.00 0.00 38.99 3.58
5781 7041 4.843220 AGCTTCTCAAACATTCCTTGTG 57.157 40.909 0.00 0.00 38.99 3.33
5782 7042 5.376625 TGTAGCTTCTCAAACATTCCTTGT 58.623 37.500 0.00 0.00 41.53 3.16
5783 7043 5.471456 ACTGTAGCTTCTCAAACATTCCTTG 59.529 40.000 0.00 0.00 0.00 3.61
5784 7044 5.625150 ACTGTAGCTTCTCAAACATTCCTT 58.375 37.500 0.00 0.00 0.00 3.36
5785 7045 5.234466 ACTGTAGCTTCTCAAACATTCCT 57.766 39.130 0.00 0.00 0.00 3.36
5786 7046 5.351740 GGTACTGTAGCTTCTCAAACATTCC 59.648 44.000 9.64 0.00 0.00 3.01
5787 7047 5.351740 GGGTACTGTAGCTTCTCAAACATTC 59.648 44.000 15.74 0.00 0.00 2.67
5788 7048 5.013183 AGGGTACTGTAGCTTCTCAAACATT 59.987 40.000 15.74 0.00 0.00 2.71
5789 7049 4.532521 AGGGTACTGTAGCTTCTCAAACAT 59.467 41.667 15.74 0.00 0.00 2.71
5790 7050 3.901844 AGGGTACTGTAGCTTCTCAAACA 59.098 43.478 15.74 0.00 0.00 2.83
5791 7051 4.538746 AGGGTACTGTAGCTTCTCAAAC 57.461 45.455 15.74 0.00 0.00 2.93
5792 7052 5.778750 AGTTAGGGTACTGTAGCTTCTCAAA 59.221 40.000 15.74 0.00 0.00 2.69
5793 7053 5.331069 AGTTAGGGTACTGTAGCTTCTCAA 58.669 41.667 15.74 0.00 0.00 3.02
5794 7054 4.931914 AGTTAGGGTACTGTAGCTTCTCA 58.068 43.478 15.74 0.00 0.00 3.27
5795 7055 5.918426 AAGTTAGGGTACTGTAGCTTCTC 57.082 43.478 15.74 6.27 0.00 2.87
5796 7056 5.187381 GGAAAGTTAGGGTACTGTAGCTTCT 59.813 44.000 15.74 8.58 0.00 2.85
5797 7057 5.187381 AGGAAAGTTAGGGTACTGTAGCTTC 59.813 44.000 15.74 10.35 0.00 3.86
5798 7058 5.092259 AGGAAAGTTAGGGTACTGTAGCTT 58.908 41.667 15.74 11.38 0.00 3.74
5799 7059 4.685807 AGGAAAGTTAGGGTACTGTAGCT 58.314 43.478 15.74 0.00 0.00 3.32
5800 7060 5.187381 AGAAGGAAAGTTAGGGTACTGTAGC 59.813 44.000 8.46 8.46 0.00 3.58
5801 7061 6.854091 AGAAGGAAAGTTAGGGTACTGTAG 57.146 41.667 0.00 0.00 0.00 2.74
5802 7062 7.511714 AGAAAGAAGGAAAGTTAGGGTACTGTA 59.488 37.037 0.00 0.00 0.00 2.74
5803 7063 6.329460 AGAAAGAAGGAAAGTTAGGGTACTGT 59.671 38.462 0.00 0.00 0.00 3.55
5804 7064 6.770542 AGAAAGAAGGAAAGTTAGGGTACTG 58.229 40.000 0.00 0.00 0.00 2.74
5805 7065 8.682297 ATAGAAAGAAGGAAAGTTAGGGTACT 57.318 34.615 0.00 0.00 0.00 2.73
5806 7066 9.381033 GAATAGAAAGAAGGAAAGTTAGGGTAC 57.619 37.037 0.00 0.00 0.00 3.34
5807 7067 9.108111 TGAATAGAAAGAAGGAAAGTTAGGGTA 57.892 33.333 0.00 0.00 0.00 3.69
5808 7068 7.985589 TGAATAGAAAGAAGGAAAGTTAGGGT 58.014 34.615 0.00 0.00 0.00 4.34
5901 7161 8.855110 TCACCATCAATTTGTTTGTATGTAGTT 58.145 29.630 0.00 0.00 36.65 2.24
5902 7162 8.402798 TCACCATCAATTTGTTTGTATGTAGT 57.597 30.769 0.00 0.00 36.65 2.73
5903 7163 9.689976 TTTCACCATCAATTTGTTTGTATGTAG 57.310 29.630 0.00 0.00 36.65 2.74
5967 7227 8.796475 ACTGTTAGCAGATTGTTTATTGTTGAT 58.204 29.630 14.09 0.00 45.28 2.57
5968 7228 8.165239 ACTGTTAGCAGATTGTTTATTGTTGA 57.835 30.769 14.09 0.00 45.28 3.18
5969 7229 8.292448 AGACTGTTAGCAGATTGTTTATTGTTG 58.708 33.333 14.09 0.00 45.28 3.33
5970 7230 8.396272 AGACTGTTAGCAGATTGTTTATTGTT 57.604 30.769 14.09 0.00 45.28 2.83
5971 7231 7.880195 AGAGACTGTTAGCAGATTGTTTATTGT 59.120 33.333 14.09 0.00 45.28 2.71
5972 7232 8.261492 AGAGACTGTTAGCAGATTGTTTATTG 57.739 34.615 14.09 0.00 45.28 1.90
5973 7233 9.944376 TTAGAGACTGTTAGCAGATTGTTTATT 57.056 29.630 14.09 0.00 45.28 1.40
5974 7234 9.372369 GTTAGAGACTGTTAGCAGATTGTTTAT 57.628 33.333 14.09 0.00 45.28 1.40
5975 7235 8.585881 AGTTAGAGACTGTTAGCAGATTGTTTA 58.414 33.333 14.09 0.00 45.28 2.01
5976 7236 7.445945 AGTTAGAGACTGTTAGCAGATTGTTT 58.554 34.615 14.09 0.00 45.28 2.83
5977 7237 6.998802 AGTTAGAGACTGTTAGCAGATTGTT 58.001 36.000 14.09 0.00 45.28 2.83
5978 7238 6.597832 AGTTAGAGACTGTTAGCAGATTGT 57.402 37.500 14.09 2.26 45.28 2.71
5979 7239 7.064016 GGAAAGTTAGAGACTGTTAGCAGATTG 59.936 40.741 14.09 0.00 45.28 2.67
5980 7240 7.038658 AGGAAAGTTAGAGACTGTTAGCAGATT 60.039 37.037 14.09 0.47 45.28 2.40
5981 7241 6.439058 AGGAAAGTTAGAGACTGTTAGCAGAT 59.561 38.462 14.09 1.13 45.28 2.90
5982 7242 5.775701 AGGAAAGTTAGAGACTGTTAGCAGA 59.224 40.000 14.09 0.00 45.28 4.26
5984 7244 6.267928 AGAAGGAAAGTTAGAGACTGTTAGCA 59.732 38.462 0.00 0.00 39.00 3.49
5985 7245 6.693466 AGAAGGAAAGTTAGAGACTGTTAGC 58.307 40.000 0.00 0.00 39.00 3.09
5986 7246 7.600752 CCAAGAAGGAAAGTTAGAGACTGTTAG 59.399 40.741 0.00 0.00 41.22 2.34
5987 7247 7.289317 TCCAAGAAGGAAAGTTAGAGACTGTTA 59.711 37.037 0.00 0.00 45.65 2.41
5988 7248 6.099845 TCCAAGAAGGAAAGTTAGAGACTGTT 59.900 38.462 0.00 0.00 45.65 3.16
5989 7249 5.602978 TCCAAGAAGGAAAGTTAGAGACTGT 59.397 40.000 0.00 0.00 45.65 3.55
5990 7250 6.102897 TCCAAGAAGGAAAGTTAGAGACTG 57.897 41.667 0.00 0.00 45.65 3.51
6004 7264 6.981559 GCTAGTCTAGTGTAAATCCAAGAAGG 59.018 42.308 8.68 0.00 39.47 3.46
6005 7265 7.548097 TGCTAGTCTAGTGTAAATCCAAGAAG 58.452 38.462 8.68 0.00 0.00 2.85
6006 7266 7.476540 TGCTAGTCTAGTGTAAATCCAAGAA 57.523 36.000 8.68 0.00 0.00 2.52
6007 7267 7.661536 ATGCTAGTCTAGTGTAAATCCAAGA 57.338 36.000 8.68 0.00 0.00 3.02
6008 7268 7.766278 ACAATGCTAGTCTAGTGTAAATCCAAG 59.234 37.037 8.68 0.00 0.00 3.61
6009 7269 7.620880 ACAATGCTAGTCTAGTGTAAATCCAA 58.379 34.615 8.68 0.00 0.00 3.53
6010 7270 7.182817 ACAATGCTAGTCTAGTGTAAATCCA 57.817 36.000 8.68 0.00 0.00 3.41
6011 7271 7.382759 GCTACAATGCTAGTCTAGTGTAAATCC 59.617 40.741 8.68 0.00 0.00 3.01
6012 7272 7.921214 TGCTACAATGCTAGTCTAGTGTAAATC 59.079 37.037 8.68 3.54 0.00 2.17
6013 7273 7.782049 TGCTACAATGCTAGTCTAGTGTAAAT 58.218 34.615 8.68 0.00 0.00 1.40
6014 7274 7.165460 TGCTACAATGCTAGTCTAGTGTAAA 57.835 36.000 8.68 0.00 0.00 2.01
6015 7275 6.769134 TGCTACAATGCTAGTCTAGTGTAA 57.231 37.500 8.68 0.00 0.00 2.41
6016 7276 6.239036 CCATGCTACAATGCTAGTCTAGTGTA 60.239 42.308 8.68 8.28 0.00 2.90
6017 7277 5.452496 CCATGCTACAATGCTAGTCTAGTGT 60.452 44.000 8.68 7.61 0.00 3.55
6018 7278 4.987285 CCATGCTACAATGCTAGTCTAGTG 59.013 45.833 8.68 2.07 0.00 2.74
6019 7279 4.651503 ACCATGCTACAATGCTAGTCTAGT 59.348 41.667 8.68 0.00 0.00 2.57
6020 7280 4.987285 CACCATGCTACAATGCTAGTCTAG 59.013 45.833 2.18 2.18 0.00 2.43
6021 7281 4.649218 TCACCATGCTACAATGCTAGTCTA 59.351 41.667 0.00 0.00 0.00 2.59
6022 7282 3.452264 TCACCATGCTACAATGCTAGTCT 59.548 43.478 0.00 0.00 0.00 3.24
6023 7283 3.557595 GTCACCATGCTACAATGCTAGTC 59.442 47.826 0.00 0.00 0.00 2.59
6024 7284 3.198635 AGTCACCATGCTACAATGCTAGT 59.801 43.478 0.00 0.00 0.00 2.57
6025 7285 3.801698 AGTCACCATGCTACAATGCTAG 58.198 45.455 0.00 0.00 0.00 3.42
6026 7286 3.912496 AGTCACCATGCTACAATGCTA 57.088 42.857 0.00 0.00 0.00 3.49
6027 7287 2.795231 AGTCACCATGCTACAATGCT 57.205 45.000 0.00 0.00 0.00 3.79
6028 7288 3.428045 GGAAAGTCACCATGCTACAATGC 60.428 47.826 0.00 0.00 0.00 3.56
6029 7289 4.012374 AGGAAAGTCACCATGCTACAATG 58.988 43.478 0.00 0.00 0.00 2.82
6030 7290 4.307032 AGGAAAGTCACCATGCTACAAT 57.693 40.909 0.00 0.00 0.00 2.71
6031 7291 3.788227 AGGAAAGTCACCATGCTACAA 57.212 42.857 0.00 0.00 0.00 2.41
6032 7292 3.181445 ACAAGGAAAGTCACCATGCTACA 60.181 43.478 0.00 0.00 30.49 2.74
6033 7293 3.189287 CACAAGGAAAGTCACCATGCTAC 59.811 47.826 0.00 0.00 30.49 3.58
6034 7294 3.072330 TCACAAGGAAAGTCACCATGCTA 59.928 43.478 0.00 0.00 30.49 3.49
6035 7295 2.158623 TCACAAGGAAAGTCACCATGCT 60.159 45.455 0.00 0.00 30.49 3.79
6036 7296 2.229792 TCACAAGGAAAGTCACCATGC 58.770 47.619 0.00 0.00 30.49 4.06
6037 7297 4.279169 ACATTCACAAGGAAAGTCACCATG 59.721 41.667 0.00 0.00 39.39 3.66
6038 7298 4.473444 ACATTCACAAGGAAAGTCACCAT 58.527 39.130 0.00 0.00 39.39 3.55
6039 7299 3.897239 ACATTCACAAGGAAAGTCACCA 58.103 40.909 0.00 0.00 39.39 4.17
6040 7300 4.918810 AACATTCACAAGGAAAGTCACC 57.081 40.909 0.00 0.00 36.48 4.02
6041 7301 6.073003 CCTCTAACATTCACAAGGAAAGTCAC 60.073 42.308 0.00 0.00 36.48 3.67
6042 7302 5.997746 CCTCTAACATTCACAAGGAAAGTCA 59.002 40.000 0.00 0.00 36.48 3.41
6043 7303 6.231211 TCCTCTAACATTCACAAGGAAAGTC 58.769 40.000 0.00 0.00 36.48 3.01
6044 7304 6.187727 TCCTCTAACATTCACAAGGAAAGT 57.812 37.500 0.00 0.00 38.98 2.66
6045 7305 6.317391 GGATCCTCTAACATTCACAAGGAAAG 59.683 42.308 3.84 0.00 39.39 2.62
6046 7306 6.180472 GGATCCTCTAACATTCACAAGGAAA 58.820 40.000 3.84 0.00 39.39 3.13
6047 7307 5.626809 CGGATCCTCTAACATTCACAAGGAA 60.627 44.000 10.75 0.00 36.56 3.36
6048 7308 4.141937 CGGATCCTCTAACATTCACAAGGA 60.142 45.833 10.75 0.00 37.33 3.36
6049 7309 4.122776 CGGATCCTCTAACATTCACAAGG 58.877 47.826 10.75 0.00 0.00 3.61
6050 7310 4.122776 CCGGATCCTCTAACATTCACAAG 58.877 47.826 10.75 0.00 0.00 3.16
6051 7311 3.517901 ACCGGATCCTCTAACATTCACAA 59.482 43.478 9.46 0.00 0.00 3.33
6052 7312 3.104512 ACCGGATCCTCTAACATTCACA 58.895 45.455 9.46 0.00 0.00 3.58
6053 7313 3.821421 ACCGGATCCTCTAACATTCAC 57.179 47.619 9.46 0.00 0.00 3.18
6054 7314 3.134081 GGAACCGGATCCTCTAACATTCA 59.866 47.826 22.87 0.00 36.50 2.57
6055 7315 3.494573 GGGAACCGGATCCTCTAACATTC 60.495 52.174 27.91 7.53 40.86 2.67
6056 7316 2.438392 GGGAACCGGATCCTCTAACATT 59.562 50.000 27.91 0.00 40.86 2.71
6057 7317 2.047830 GGGAACCGGATCCTCTAACAT 58.952 52.381 27.91 0.00 40.86 2.71
6058 7318 1.492764 GGGAACCGGATCCTCTAACA 58.507 55.000 27.91 0.00 40.86 2.41


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.