Multiple sequence alignment - TraesCS4B01G084000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G084000 chr4B 100.000 7232 0 0 1 7232 82428634 82421403 0.000000e+00 13356.0
1 TraesCS4B01G084000 chr4D 93.299 5656 211 55 821 6418 55362862 55357317 0.000000e+00 8191.0
2 TraesCS4B01G084000 chr4D 90.076 655 36 16 6582 7231 55357024 55356394 0.000000e+00 822.0
3 TraesCS4B01G084000 chr4D 84.363 518 46 17 1 501 55375298 55374799 6.570000e-130 475.0
4 TraesCS4B01G084000 chr4D 93.939 231 11 2 6365 6593 55357318 55357089 5.370000e-91 346.0
5 TraesCS4B01G084000 chr4A 93.194 3100 107 41 1203 4266 541672571 541675602 0.000000e+00 4460.0
6 TraesCS4B01G084000 chr4A 94.094 1744 71 17 4842 6581 541678277 541679992 0.000000e+00 2621.0
7 TraesCS4B01G084000 chr4A 94.715 492 18 5 4300 4783 541677787 541678278 0.000000e+00 758.0
8 TraesCS4B01G084000 chr4A 92.191 461 19 7 6777 7232 541680196 541680644 2.850000e-178 636.0
9 TraesCS4B01G084000 chr4A 79.303 918 114 42 75 944 541666653 541667542 2.260000e-159 573.0
10 TraesCS4B01G084000 chr4A 93.916 263 16 0 4262 4524 541677527 541677789 1.460000e-106 398.0
11 TraesCS4B01G084000 chr4A 92.593 189 10 1 954 1142 541672068 541672252 1.200000e-67 268.0
12 TraesCS4B01G084000 chr4A 100.000 29 0 0 938 966 541672032 541672060 4.000000e-03 54.7
13 TraesCS4B01G084000 chr6B 100.000 28 0 0 1024 1051 6076098 6076071 1.300000e-02 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G084000 chr4B 82421403 82428634 7231 True 13356.000000 13356 100.000000 1 7232 1 chr4B.!!$R1 7231
1 TraesCS4B01G084000 chr4D 55356394 55362862 6468 True 3119.666667 8191 92.438000 821 7231 3 chr4D.!!$R2 6410
2 TraesCS4B01G084000 chr4A 541672032 541680644 8612 False 1313.671429 4460 94.386143 938 7232 7 chr4A.!!$F2 6294
3 TraesCS4B01G084000 chr4A 541666653 541667542 889 False 573.000000 573 79.303000 75 944 1 chr4A.!!$F1 869

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
871 925 0.033504 TCCGCAACAGAGAACAGACC 59.966 55.000 0.00 0.00 0.00 3.85 F
873 927 0.249868 CGCAACAGAGAACAGACCCA 60.250 55.000 0.00 0.00 0.00 4.51 F
876 930 0.249911 AACAGAGAACAGACCCACGC 60.250 55.000 0.00 0.00 0.00 5.34 F
910 972 0.322456 CGGAAATTCTCCACCCAGCA 60.322 55.000 0.00 0.00 45.74 4.41 F
1306 1654 0.396974 TTGGTGTTTGCTGCTCCCTT 60.397 50.000 0.00 0.00 0.00 3.95 F
1307 1655 1.108727 TGGTGTTTGCTGCTCCCTTG 61.109 55.000 0.00 0.00 0.00 3.61 F
1308 1656 1.109323 GGTGTTTGCTGCTCCCTTGT 61.109 55.000 0.00 0.00 0.00 3.16 F
1400 1748 1.484653 CAGGTTGTATGGATCACGGGA 59.515 52.381 0.00 0.00 0.00 5.14 F
1994 2360 1.880027 GGTCAATGGTCAGTTGGTCAC 59.120 52.381 0.00 0.00 0.00 3.67 F
2939 3321 2.991866 GACAACGTAACTCCCTGCTAAC 59.008 50.000 0.00 0.00 0.00 2.34 F
3963 4348 3.925379 ACGTTATCACATTCTGCTCACA 58.075 40.909 0.00 0.00 0.00 3.58 F
4913 7458 2.202987 CGGCATGGCTCAGAGTCC 60.203 66.667 18.09 1.76 0.00 3.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1986 2352 1.073199 CACCCCCTCTGTGACCAAC 59.927 63.158 0.0 0.00 35.74 3.77 R
1994 2360 1.222936 GATGCAGACACCCCCTCTG 59.777 63.158 0.0 0.00 38.59 3.35 R
2584 2966 1.607628 GCTATCTGGATGCTTGCCTTG 59.392 52.381 0.0 0.00 0.00 3.61 R
2930 3312 7.771183 TGCATAAAAAGAAATAGTTAGCAGGG 58.229 34.615 0.0 0.00 0.00 4.45 R
2952 3334 3.138884 TGACATGAAAAGTAGCCTGCA 57.861 42.857 0.0 0.00 0.00 4.41 R
3247 3630 9.013490 CAGAATGTATTATGTTGCAAGCTTAAC 57.987 33.333 0.0 1.34 0.00 2.01 R
3392 3775 8.964533 ATATCTACAGAGAACCATCTAACCAT 57.035 34.615 0.0 0.00 35.54 3.55 R
3420 3803 7.118535 ACAAACAAAACATACAGGAAAACAACC 59.881 33.333 0.0 0.00 0.00 3.77 R
3553 3936 2.575532 TGAAGAAGTTGCACCAGAAGG 58.424 47.619 0.0 0.00 42.21 3.46 R
3991 4376 3.142174 GGGACTGAGAACCAACTTTCAG 58.858 50.000 0.0 0.00 42.07 3.02 R
5172 7717 0.465642 GGGTGAAATCTAAGGCCCCG 60.466 60.000 0.0 0.00 0.00 5.73 R
6691 9374 0.179150 ATTGTTGCGTGTTGTTGCGT 60.179 45.000 0.0 0.00 0.00 5.24 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 7.942733 ATATATATGCATCCATCTTGAGGGA 57.057 36.000 0.19 6.48 37.64 4.20
27 28 2.953284 ATGCATCCATCTTGAGGGAG 57.047 50.000 9.85 3.94 36.45 4.30
28 29 0.182061 TGCATCCATCTTGAGGGAGC 59.818 55.000 9.85 12.45 36.45 4.70
29 30 0.536915 GCATCCATCTTGAGGGAGCC 60.537 60.000 9.85 0.22 36.45 4.70
30 31 0.250209 CATCCATCTTGAGGGAGCCG 60.250 60.000 9.85 0.00 36.45 5.52
31 32 0.692419 ATCCATCTTGAGGGAGCCGT 60.692 55.000 9.85 0.00 36.45 5.68
32 33 1.153289 CCATCTTGAGGGAGCCGTG 60.153 63.158 0.00 0.00 0.00 4.94
33 34 1.599047 CATCTTGAGGGAGCCGTGT 59.401 57.895 0.00 0.00 0.00 4.49
34 35 0.742281 CATCTTGAGGGAGCCGTGTG 60.742 60.000 0.00 0.00 0.00 3.82
35 36 1.194781 ATCTTGAGGGAGCCGTGTGT 61.195 55.000 0.00 0.00 0.00 3.72
36 37 0.541063 TCTTGAGGGAGCCGTGTGTA 60.541 55.000 0.00 0.00 0.00 2.90
37 38 0.320374 CTTGAGGGAGCCGTGTGTAA 59.680 55.000 0.00 0.00 0.00 2.41
38 39 0.320374 TTGAGGGAGCCGTGTGTAAG 59.680 55.000 0.00 0.00 0.00 2.34
39 40 0.830444 TGAGGGAGCCGTGTGTAAGT 60.830 55.000 0.00 0.00 0.00 2.24
40 41 0.108756 GAGGGAGCCGTGTGTAAGTC 60.109 60.000 0.00 0.00 0.00 3.01
41 42 0.830444 AGGGAGCCGTGTGTAAGTCA 60.830 55.000 0.00 0.00 0.00 3.41
42 43 0.669625 GGGAGCCGTGTGTAAGTCAC 60.670 60.000 0.00 0.00 46.31 3.67
43 44 0.669625 GGAGCCGTGTGTAAGTCACC 60.670 60.000 0.00 0.00 45.61 4.02
44 45 0.317479 GAGCCGTGTGTAAGTCACCT 59.683 55.000 0.00 0.00 45.61 4.00
45 46 1.542915 GAGCCGTGTGTAAGTCACCTA 59.457 52.381 0.00 0.00 45.61 3.08
46 47 1.544691 AGCCGTGTGTAAGTCACCTAG 59.455 52.381 0.00 0.00 45.61 3.02
47 48 1.992170 CCGTGTGTAAGTCACCTAGC 58.008 55.000 0.00 0.00 45.61 3.42
48 49 1.271379 CCGTGTGTAAGTCACCTAGCA 59.729 52.381 0.00 0.00 45.61 3.49
49 50 2.596452 CGTGTGTAAGTCACCTAGCAG 58.404 52.381 0.00 0.00 45.61 4.24
50 51 2.671351 CGTGTGTAAGTCACCTAGCAGG 60.671 54.545 1.16 1.16 45.61 4.85
51 52 1.275291 TGTGTAAGTCACCTAGCAGGC 59.725 52.381 2.50 0.00 45.61 4.85
52 53 1.275291 GTGTAAGTCACCTAGCAGGCA 59.725 52.381 2.50 0.00 39.63 4.75
53 54 1.974957 TGTAAGTCACCTAGCAGGCAA 59.025 47.619 2.50 0.00 39.63 4.52
54 55 2.028112 TGTAAGTCACCTAGCAGGCAAG 60.028 50.000 2.50 0.00 39.63 4.01
55 56 0.326264 AAGTCACCTAGCAGGCAAGG 59.674 55.000 2.50 0.00 39.63 3.61
56 57 0.545309 AGTCACCTAGCAGGCAAGGA 60.545 55.000 2.50 0.00 39.63 3.36
57 58 0.107945 GTCACCTAGCAGGCAAGGAG 60.108 60.000 2.50 0.00 39.63 3.69
58 59 1.222936 CACCTAGCAGGCAAGGAGG 59.777 63.158 2.50 0.00 39.63 4.30
59 60 1.081092 ACCTAGCAGGCAAGGAGGA 59.919 57.895 8.07 0.00 39.63 3.71
60 61 1.268283 ACCTAGCAGGCAAGGAGGAC 61.268 60.000 8.07 0.00 39.63 3.85
61 62 1.267574 CCTAGCAGGCAAGGAGGACA 61.268 60.000 0.00 0.00 34.58 4.02
62 63 0.177604 CTAGCAGGCAAGGAGGACAG 59.822 60.000 0.00 0.00 0.00 3.51
63 64 1.903877 TAGCAGGCAAGGAGGACAGC 61.904 60.000 0.00 0.00 0.00 4.40
97 98 2.880890 CCACCTTGAAGAACACCTCAAG 59.119 50.000 0.00 5.09 39.23 3.02
110 111 1.272769 ACCTCAAGTACGTCCAAGAGC 59.727 52.381 0.00 0.00 0.00 4.09
113 114 2.989840 CTCAAGTACGTCCAAGAGCAAG 59.010 50.000 0.00 0.00 0.00 4.01
131 132 0.321653 AGGGAAGAACACATCCACGC 60.322 55.000 0.00 0.00 37.46 5.34
142 143 0.394216 CATCCACGCTGGGATCCAAA 60.394 55.000 15.23 0.00 45.91 3.28
161 162 4.134563 CAAAAAGGACGAAGAAGGGAGAA 58.865 43.478 0.00 0.00 0.00 2.87
176 177 0.534873 GAGAAGCCTCCACCTCTGAC 59.465 60.000 0.00 0.00 33.30 3.51
219 220 1.536418 CACCTCCTCCCACTCCACA 60.536 63.158 0.00 0.00 0.00 4.17
234 235 2.628178 CTCCACAGTGACTACTCAACCA 59.372 50.000 0.62 0.00 34.07 3.67
240 241 1.275573 GTGACTACTCAACCACCTCCC 59.724 57.143 0.00 0.00 0.00 4.30
241 242 0.531200 GACTACTCAACCACCTCCCG 59.469 60.000 0.00 0.00 0.00 5.14
249 250 0.399075 AACCACCTCCCGTTAGTTGG 59.601 55.000 0.00 0.00 0.00 3.77
284 285 9.821662 GAATAAATCTGTATAAATAACGCCACC 57.178 33.333 0.00 0.00 0.00 4.61
290 291 6.321945 TCTGTATAAATAACGCCACCAGTCTA 59.678 38.462 0.00 0.00 0.00 2.59
303 304 2.012673 CCAGTCTAGGTCAAGCAATGC 58.987 52.381 0.00 0.00 0.00 3.56
314 315 4.808364 GGTCAAGCAATGCTACAAAACAAA 59.192 37.500 8.68 0.00 38.25 2.83
315 316 5.293079 GGTCAAGCAATGCTACAAAACAAAA 59.707 36.000 8.68 0.00 38.25 2.44
327 328 9.995003 TGCTACAAAACAAAATTAAGAATCCAT 57.005 25.926 0.00 0.00 0.00 3.41
336 337 6.811634 AAATTAAGAATCCATTCATGCCCA 57.188 33.333 2.21 0.00 39.23 5.36
338 339 6.811634 ATTAAGAATCCATTCATGCCCAAA 57.188 33.333 2.21 0.00 39.23 3.28
339 340 4.748277 AAGAATCCATTCATGCCCAAAG 57.252 40.909 2.21 0.00 39.23 2.77
356 357 4.382685 CCCAAAGCGATTCTACTGAGGTTA 60.383 45.833 0.00 0.00 0.00 2.85
357 358 5.175859 CCAAAGCGATTCTACTGAGGTTAA 58.824 41.667 0.00 0.00 0.00 2.01
359 360 5.401531 AAGCGATTCTACTGAGGTTAACA 57.598 39.130 8.10 0.00 0.00 2.41
366 367 9.698309 CGATTCTACTGAGGTTAACAATATCAT 57.302 33.333 8.10 0.58 0.00 2.45
373 374 6.364701 TGAGGTTAACAATATCATTCCTGGG 58.635 40.000 8.10 0.00 0.00 4.45
375 376 7.128109 TGAGGTTAACAATATCATTCCTGGGTA 59.872 37.037 8.10 0.00 0.00 3.69
378 379 7.444487 GGTTAACAATATCATTCCTGGGTAGAC 59.556 40.741 8.10 0.00 0.00 2.59
380 381 6.426646 ACAATATCATTCCTGGGTAGACTC 57.573 41.667 0.00 0.00 0.00 3.36
382 383 2.820728 TCATTCCTGGGTAGACTCGA 57.179 50.000 0.00 0.00 0.00 4.04
385 386 4.030913 TCATTCCTGGGTAGACTCGATTT 58.969 43.478 0.00 0.00 0.00 2.17
386 387 3.887621 TTCCTGGGTAGACTCGATTTG 57.112 47.619 0.00 0.00 0.00 2.32
389 390 2.233922 CCTGGGTAGACTCGATTTGTGT 59.766 50.000 0.00 0.00 0.00 3.72
401 414 1.493854 ATTTGTGTACGCCCCCTCCA 61.494 55.000 3.51 0.00 0.00 3.86
427 440 8.736097 ATTGTATACCTATACTCACCAATGGA 57.264 34.615 6.16 0.00 39.36 3.41
432 445 4.783227 ACCTATACTCACCAATGGAGTTGT 59.217 41.667 6.16 4.91 42.77 3.32
433 446 5.962031 ACCTATACTCACCAATGGAGTTGTA 59.038 40.000 6.16 7.00 42.77 2.41
434 447 6.442564 ACCTATACTCACCAATGGAGTTGTAA 59.557 38.462 6.16 0.00 42.77 2.41
435 448 7.037873 ACCTATACTCACCAATGGAGTTGTAAA 60.038 37.037 6.16 0.00 42.77 2.01
437 450 4.398319 ACTCACCAATGGAGTTGTAAAGG 58.602 43.478 6.16 0.00 42.77 3.11
438 451 4.141251 ACTCACCAATGGAGTTGTAAAGGT 60.141 41.667 6.16 0.00 42.77 3.50
439 452 4.141287 TCACCAATGGAGTTGTAAAGGTG 58.859 43.478 6.16 0.00 36.01 4.00
443 456 5.423931 ACCAATGGAGTTGTAAAGGTGTTTT 59.576 36.000 6.16 0.00 36.01 2.43
444 457 6.070481 ACCAATGGAGTTGTAAAGGTGTTTTT 60.070 34.615 6.16 0.00 36.01 1.94
445 458 7.124448 ACCAATGGAGTTGTAAAGGTGTTTTTA 59.876 33.333 6.16 0.00 36.01 1.52
446 459 8.147704 CCAATGGAGTTGTAAAGGTGTTTTTAT 58.852 33.333 0.00 0.00 36.01 1.40
483 496 4.532521 GGGAGCTTATAAGGGCATCTCTAA 59.467 45.833 14.28 0.00 0.00 2.10
488 501 6.500049 AGCTTATAAGGGCATCTCTAACAGAT 59.500 38.462 14.28 0.00 43.33 2.90
490 503 7.310361 GCTTATAAGGGCATCTCTAACAGATCT 60.310 40.741 14.28 0.00 40.20 2.75
513 526 7.132805 TCTCCTATCCTAAAAGTCCAGAATCA 58.867 38.462 0.00 0.00 0.00 2.57
520 534 6.044404 TCCTAAAAGTCCAGAATCACTCCTTT 59.956 38.462 0.00 0.00 0.00 3.11
526 540 3.593328 TCCAGAATCACTCCTTTTCCCAT 59.407 43.478 0.00 0.00 0.00 4.00
539 553 0.035439 TTCCCATCGGCTTCTTCACC 60.035 55.000 0.00 0.00 0.00 4.02
540 554 0.909610 TCCCATCGGCTTCTTCACCT 60.910 55.000 0.00 0.00 0.00 4.00
543 557 0.539051 CATCGGCTTCTTCACCTCCT 59.461 55.000 0.00 0.00 0.00 3.69
544 558 1.065854 CATCGGCTTCTTCACCTCCTT 60.066 52.381 0.00 0.00 0.00 3.36
545 559 1.056660 TCGGCTTCTTCACCTCCTTT 58.943 50.000 0.00 0.00 0.00 3.11
546 560 1.160137 CGGCTTCTTCACCTCCTTTG 58.840 55.000 0.00 0.00 0.00 2.77
547 561 1.543429 CGGCTTCTTCACCTCCTTTGT 60.543 52.381 0.00 0.00 0.00 2.83
548 562 2.155279 GGCTTCTTCACCTCCTTTGTC 58.845 52.381 0.00 0.00 0.00 3.18
549 563 2.487265 GGCTTCTTCACCTCCTTTGTCA 60.487 50.000 0.00 0.00 0.00 3.58
550 564 3.416156 GCTTCTTCACCTCCTTTGTCAT 58.584 45.455 0.00 0.00 0.00 3.06
551 565 3.190118 GCTTCTTCACCTCCTTTGTCATG 59.810 47.826 0.00 0.00 0.00 3.07
552 566 4.392940 CTTCTTCACCTCCTTTGTCATGT 58.607 43.478 0.00 0.00 0.00 3.21
560 574 3.554960 CCTCCTTTGTCATGTCTTCGTCA 60.555 47.826 0.00 0.00 0.00 4.35
575 589 3.855159 GTCAATGACGGTAAGCCCT 57.145 52.632 0.00 0.00 0.00 5.19
579 593 1.737793 CAATGACGGTAAGCCCTTGTC 59.262 52.381 0.00 0.00 0.00 3.18
580 594 0.252197 ATGACGGTAAGCCCTTGTCC 59.748 55.000 0.00 0.00 0.00 4.02
581 595 1.122632 TGACGGTAAGCCCTTGTCCA 61.123 55.000 0.00 0.00 0.00 4.02
582 596 0.672711 GACGGTAAGCCCTTGTCCAC 60.673 60.000 0.00 0.00 0.00 4.02
607 621 5.376625 TGATTTAGGGATTCATGTAGGCAC 58.623 41.667 0.00 0.00 0.00 5.01
608 622 5.132648 TGATTTAGGGATTCATGTAGGCACT 59.867 40.000 0.00 0.00 46.37 4.40
623 648 2.027192 AGGCACTTGAGGCTTCGATTTA 60.027 45.455 0.00 0.00 42.35 1.40
635 660 3.060895 GCTTCGATTTAGGTGTCAACTCG 59.939 47.826 0.00 0.00 31.57 4.18
644 669 1.609841 GGTGTCAACTCGGGTTTAGGG 60.610 57.143 0.00 0.00 32.73 3.53
645 670 1.071228 GTGTCAACTCGGGTTTAGGGT 59.929 52.381 0.00 0.00 32.73 4.34
655 680 4.882559 TCGGGTTTAGGGTAGGATTTAGA 58.117 43.478 0.00 0.00 0.00 2.10
661 686 7.311486 GGGTTTAGGGTAGGATTTAGAGTTTCA 60.311 40.741 0.00 0.00 0.00 2.69
666 691 7.897864 AGGGTAGGATTTAGAGTTTCATATCG 58.102 38.462 0.00 0.00 0.00 2.92
672 697 7.228906 AGGATTTAGAGTTTCATATCGACTCGA 59.771 37.037 3.06 3.06 43.43 4.04
700 725 5.245075 GGGTGTCAATTAAGGGTTTCATTCA 59.755 40.000 0.00 0.00 0.00 2.57
741 767 3.488310 GCAGTGTGAATGCTTGTTCAAAG 59.512 43.478 0.00 0.00 39.61 2.77
751 777 4.609947 TGCTTGTTCAAAGTGCTATGTTG 58.390 39.130 0.00 0.00 0.00 3.33
753 779 4.442073 GCTTGTTCAAAGTGCTATGTTGTG 59.558 41.667 0.00 0.00 0.00 3.33
754 780 3.963665 TGTTCAAAGTGCTATGTTGTGC 58.036 40.909 0.00 0.00 0.00 4.57
755 781 3.243367 TGTTCAAAGTGCTATGTTGTGCC 60.243 43.478 0.00 0.00 0.00 5.01
756 782 2.862541 TCAAAGTGCTATGTTGTGCCT 58.137 42.857 0.00 0.00 0.00 4.75
788 842 1.869574 CGTCCACGCTGTCAGATCG 60.870 63.158 3.32 0.84 0.00 3.69
789 843 1.213013 GTCCACGCTGTCAGATCGT 59.787 57.895 3.32 1.54 36.84 3.73
790 844 0.388649 GTCCACGCTGTCAGATCGTT 60.389 55.000 3.32 0.00 33.84 3.85
791 845 0.388520 TCCACGCTGTCAGATCGTTG 60.389 55.000 3.32 1.07 33.84 4.10
792 846 1.417592 CACGCTGTCAGATCGTTGC 59.582 57.895 3.32 0.00 33.84 4.17
793 847 1.006220 ACGCTGTCAGATCGTTGCA 60.006 52.632 3.32 0.00 31.89 4.08
794 848 1.010935 ACGCTGTCAGATCGTTGCAG 61.011 55.000 3.32 5.62 31.89 4.41
795 849 1.690283 CGCTGTCAGATCGTTGCAGG 61.690 60.000 3.32 0.00 0.00 4.85
809 863 1.006922 GCAGGTTGCAGCCACTTTC 60.007 57.895 22.64 1.83 44.26 2.62
818 872 3.849953 GCCACTTTCGCGGCGTAG 61.850 66.667 22.90 21.07 38.82 3.51
863 917 2.163818 TAACCACTTCCGCAACAGAG 57.836 50.000 0.00 0.00 0.00 3.35
864 918 0.468226 AACCACTTCCGCAACAGAGA 59.532 50.000 0.00 0.00 0.00 3.10
865 919 0.468226 ACCACTTCCGCAACAGAGAA 59.532 50.000 0.00 0.00 0.00 2.87
866 920 0.868406 CCACTTCCGCAACAGAGAAC 59.132 55.000 0.00 0.00 0.00 3.01
867 921 1.581934 CACTTCCGCAACAGAGAACA 58.418 50.000 0.00 0.00 0.00 3.18
869 923 1.412710 ACTTCCGCAACAGAGAACAGA 59.587 47.619 0.00 0.00 0.00 3.41
871 925 0.033504 TCCGCAACAGAGAACAGACC 59.966 55.000 0.00 0.00 0.00 3.85
873 927 0.249868 CGCAACAGAGAACAGACCCA 60.250 55.000 0.00 0.00 0.00 4.51
874 928 1.230324 GCAACAGAGAACAGACCCAC 58.770 55.000 0.00 0.00 0.00 4.61
875 929 1.502231 CAACAGAGAACAGACCCACG 58.498 55.000 0.00 0.00 0.00 4.94
876 930 0.249911 AACAGAGAACAGACCCACGC 60.250 55.000 0.00 0.00 0.00 5.34
877 931 1.374758 CAGAGAACAGACCCACGCC 60.375 63.158 0.00 0.00 0.00 5.68
878 932 1.837051 AGAGAACAGACCCACGCCA 60.837 57.895 0.00 0.00 0.00 5.69
879 933 1.070786 GAGAACAGACCCACGCCAA 59.929 57.895 0.00 0.00 0.00 4.52
881 935 0.818040 AGAACAGACCCACGCCAAAC 60.818 55.000 0.00 0.00 0.00 2.93
892 954 1.943693 CGCCAAACAAGCACAACCG 60.944 57.895 0.00 0.00 0.00 4.44
910 972 0.322456 CGGAAATTCTCCACCCAGCA 60.322 55.000 0.00 0.00 45.74 4.41
1103 1190 1.590259 GCCGCGTCTCCATTCTCTC 60.590 63.158 4.92 0.00 0.00 3.20
1104 1191 1.066587 CCGCGTCTCCATTCTCTCC 59.933 63.158 4.92 0.00 0.00 3.71
1105 1192 1.066587 CGCGTCTCCATTCTCTCCC 59.933 63.158 0.00 0.00 0.00 4.30
1106 1193 1.443828 GCGTCTCCATTCTCTCCCC 59.556 63.158 0.00 0.00 0.00 4.81
1138 1225 1.672854 CCACCGATCGAACCTAGGCA 61.673 60.000 18.66 0.00 0.00 4.75
1142 1229 2.492484 ACCGATCGAACCTAGGCATATC 59.508 50.000 18.66 6.33 0.00 1.63
1155 1247 2.157786 AGGCATATCCAAGTATCCCCCT 60.158 50.000 0.00 0.00 37.29 4.79
1156 1248 2.239907 GGCATATCCAAGTATCCCCCTC 59.760 54.545 0.00 0.00 34.01 4.30
1157 1249 3.185455 GCATATCCAAGTATCCCCCTCT 58.815 50.000 0.00 0.00 0.00 3.69
1193 1285 2.318908 CTCTATTCCTCTCTGCTGGCT 58.681 52.381 0.00 0.00 0.00 4.75
1195 1287 1.070445 CTATTCCTCTCTGCTGGCTGG 59.930 57.143 0.00 0.00 0.00 4.85
1196 1288 1.633915 ATTCCTCTCTGCTGGCTGGG 61.634 60.000 0.00 0.00 0.00 4.45
1290 1638 1.106944 AAAGTGGACGGCAAGGTTGG 61.107 55.000 0.00 0.00 0.00 3.77
1304 1652 1.363807 GTTGGTGTTTGCTGCTCCC 59.636 57.895 0.00 0.00 0.00 4.30
1305 1653 1.109323 GTTGGTGTTTGCTGCTCCCT 61.109 55.000 0.00 0.00 0.00 4.20
1306 1654 0.396974 TTGGTGTTTGCTGCTCCCTT 60.397 50.000 0.00 0.00 0.00 3.95
1307 1655 1.108727 TGGTGTTTGCTGCTCCCTTG 61.109 55.000 0.00 0.00 0.00 3.61
1308 1656 1.109323 GGTGTTTGCTGCTCCCTTGT 61.109 55.000 0.00 0.00 0.00 3.16
1345 1693 5.231702 TCGTTGGATTCGTTGTCTGAATTA 58.768 37.500 0.00 0.00 36.24 1.40
1346 1694 5.872617 TCGTTGGATTCGTTGTCTGAATTAT 59.127 36.000 0.00 0.00 36.24 1.28
1356 1704 6.593770 TCGTTGTCTGAATTATGTATGCTTGT 59.406 34.615 0.00 0.00 0.00 3.16
1394 1742 2.092429 TGCCCTTCAGGTTGTATGGATC 60.092 50.000 0.00 0.00 38.26 3.36
1400 1748 1.484653 CAGGTTGTATGGATCACGGGA 59.515 52.381 0.00 0.00 0.00 5.14
1460 1808 5.476599 TCTTGAATTGGGTGAATTTCATCGT 59.523 36.000 1.78 0.00 34.18 3.73
1461 1809 5.309323 TGAATTGGGTGAATTTCATCGTC 57.691 39.130 1.78 0.00 34.18 4.20
1467 1815 5.009631 TGGGTGAATTTCATCGTCAGAAAT 58.990 37.500 1.78 0.00 45.01 2.17
1468 1816 5.106197 TGGGTGAATTTCATCGTCAGAAATG 60.106 40.000 1.78 0.00 42.98 2.32
1470 1818 6.349280 GGGTGAATTTCATCGTCAGAAATGAA 60.349 38.462 1.78 5.68 42.98 2.57
1478 1826 9.579768 TTTCATCGTCAGAAATGAAAAGAAAAA 57.420 25.926 15.28 0.00 44.60 1.94
1506 1854 6.582677 TTTGGTCATAGTAAATTGGGTGTG 57.417 37.500 0.00 0.00 0.00 3.82
1507 1855 5.506730 TGGTCATAGTAAATTGGGTGTGA 57.493 39.130 0.00 0.00 0.00 3.58
1508 1856 6.073447 TGGTCATAGTAAATTGGGTGTGAT 57.927 37.500 0.00 0.00 0.00 3.06
1509 1857 6.489603 TGGTCATAGTAAATTGGGTGTGATT 58.510 36.000 0.00 0.00 0.00 2.57
1510 1858 6.376864 TGGTCATAGTAAATTGGGTGTGATTG 59.623 38.462 0.00 0.00 0.00 2.67
1631 1979 6.712998 TGCTAAACTTTAGGTGTATTGCTTCA 59.287 34.615 10.03 0.00 0.00 3.02
1883 2249 2.224329 TGCCATGCTCATGCTTTGTTTT 60.224 40.909 4.40 0.00 40.48 2.43
1994 2360 1.880027 GGTCAATGGTCAGTTGGTCAC 59.120 52.381 0.00 0.00 0.00 3.67
2061 2427 6.335471 TCAGTGAACGGTAATACAGAAAGA 57.665 37.500 0.00 0.00 0.00 2.52
2165 2532 6.763715 TTAAGCCAGATGGAGGTATTACAT 57.236 37.500 2.18 0.00 37.39 2.29
2203 2570 8.294577 GTGAAAGGTATTTTGTAGGTTTAGTGG 58.705 37.037 0.00 0.00 0.00 4.00
2230 2597 5.180492 GCCTTATGTTTGTTGCAGTGTAGTA 59.820 40.000 0.00 0.00 0.00 1.82
2239 2606 6.189677 TGTTGCAGTGTAGTATTAAATGGC 57.810 37.500 0.00 0.00 0.00 4.40
2265 2632 7.696992 AATTCACGTAAAACCTATTCATGGT 57.303 32.000 0.00 0.00 39.91 3.55
2273 2640 8.723311 CGTAAAACCTATTCATGGTTCACTTTA 58.277 33.333 0.00 0.00 45.99 1.85
2331 2698 7.489113 CCAATACATGTCATCCTTTTGCTAAAC 59.511 37.037 0.00 0.00 0.00 2.01
2382 2749 7.172532 GCATATTGTTCCACGATAACCAGAATA 59.827 37.037 0.00 0.00 28.95 1.75
2550 2932 3.808728 TCTGAGTTCTGGACCAAGTTTG 58.191 45.455 0.00 0.00 0.00 2.93
2565 2947 8.122330 GGACCAAGTTTGAATTTCATGTTTTTC 58.878 33.333 0.00 0.00 0.00 2.29
2584 2966 8.630037 TGTTTTTCCTGTTCTCTTTATTCTTCC 58.370 33.333 0.00 0.00 0.00 3.46
2622 3004 6.428159 CAGATAGCAAAGTTGAAGTGTTACCT 59.572 38.462 0.00 0.00 0.00 3.08
2939 3321 2.991866 GACAACGTAACTCCCTGCTAAC 59.008 50.000 0.00 0.00 0.00 2.34
2948 3330 6.817140 CGTAACTCCCTGCTAACTATTTCTTT 59.183 38.462 0.00 0.00 0.00 2.52
2952 3334 9.755122 AACTCCCTGCTAACTATTTCTTTTTAT 57.245 29.630 0.00 0.00 0.00 1.40
3062 3444 7.589954 GTCATTTTGTTGTGGTATGTCTGTAAC 59.410 37.037 0.00 0.00 0.00 2.50
3063 3445 7.283354 TCATTTTGTTGTGGTATGTCTGTAACA 59.717 33.333 0.00 0.00 43.51 2.41
3073 3455 9.865321 GTGGTATGTCTGTAACAGAACTTATTA 57.135 33.333 0.00 0.00 42.46 0.98
3420 3803 9.482627 GGTTAGATGGTTCTCTGTAGATATTTG 57.517 37.037 0.00 0.00 33.17 2.32
3553 3936 4.901868 TGGACCTATTGAAACACCAGTAC 58.098 43.478 0.00 0.00 0.00 2.73
3679 4062 4.526970 ACAAAGTCACACAAAGACCTCAT 58.473 39.130 0.00 0.00 36.68 2.90
3777 4160 7.119846 AGCTACCATCTTTTGTGTTTCATAGTC 59.880 37.037 0.00 0.00 0.00 2.59
3782 4165 9.831737 CCATCTTTTGTGTTTCATAGTCTTAAG 57.168 33.333 0.00 0.00 0.00 1.85
3861 4245 4.445452 AATTGCAACTGCTGAATCGAAT 57.555 36.364 0.00 0.00 42.66 3.34
3886 4270 5.615289 AGGTTATCATAATCCAGCAGTGTC 58.385 41.667 0.00 0.00 0.00 3.67
3963 4348 3.925379 ACGTTATCACATTCTGCTCACA 58.075 40.909 0.00 0.00 0.00 3.58
3991 4376 5.613358 ACATCTTGTACTTGCTTAACTGC 57.387 39.130 0.00 0.00 0.00 4.40
4195 4581 3.686016 TGGACCATTTAAGAAGCCTGAC 58.314 45.455 0.00 0.00 0.00 3.51
4217 4603 7.837505 TGACGTCTTAATTTATTATGCTCACG 58.162 34.615 17.92 0.00 0.00 4.35
4219 4605 7.618442 ACGTCTTAATTTATTATGCTCACGTG 58.382 34.615 9.94 9.94 32.51 4.49
4268 4654 6.481313 CCACCATATCTGACTCATTTACACAG 59.519 42.308 0.00 0.00 0.00 3.66
4315 6852 2.287393 AACTTTGTGCCCACGTTTTC 57.713 45.000 0.00 0.00 0.00 2.29
4442 6979 9.158233 GGTTTGTAGCTTGTATCACTATGTTAA 57.842 33.333 0.00 0.00 0.00 2.01
4475 7012 8.821894 GGTTCAAGTATCTATGACATGAAGTTC 58.178 37.037 0.00 0.00 35.76 3.01
4510 7047 3.687572 GCACTCTGCATAGTGGATTTG 57.312 47.619 27.57 7.41 45.75 2.32
4718 7263 4.336433 CCAGTCAGAACAAACTTGTCACAT 59.664 41.667 0.00 0.00 41.31 3.21
4790 7335 7.854422 GCACTTTCATGATGTCACACTTATATG 59.146 37.037 0.00 0.00 0.00 1.78
4794 7339 8.877808 TTCATGATGTCACACTTATATGACTC 57.122 34.615 0.00 2.61 44.59 3.36
4852 7397 3.778265 ACAGTTAGCCCATTTGGAACAT 58.222 40.909 0.00 0.00 39.30 2.71
4860 7405 3.070015 GCCCATTTGGAACATTGATAGGG 59.930 47.826 0.00 0.00 39.30 3.53
4913 7458 2.202987 CGGCATGGCTCAGAGTCC 60.203 66.667 18.09 1.76 0.00 3.85
5108 7653 4.457603 TGATTTCCTCCAAAATGTGTACGG 59.542 41.667 0.00 0.00 0.00 4.02
5189 7734 0.107165 AGCGGGGCCTTAGATTTCAC 60.107 55.000 0.84 0.00 0.00 3.18
5208 7754 1.850345 ACCCCTCAACCTTCAAACTGA 59.150 47.619 0.00 0.00 0.00 3.41
5340 7887 3.819368 TGATGAGCAGTGGTTTTGAAGA 58.181 40.909 0.00 0.00 0.00 2.87
5620 8167 2.851195 TCCTTCCAAGTTTCTGCTGTC 58.149 47.619 0.00 0.00 0.00 3.51
5712 8259 6.787085 AAATTCCTCGTACTTCTCTTTGTG 57.213 37.500 0.00 0.00 0.00 3.33
5784 8331 9.273016 TCTTACAGTTTCTTCTATGTTTTCTGG 57.727 33.333 0.00 0.00 0.00 3.86
5922 8469 6.094603 GCATTCATGGTAGTTCAAGAGTTGAT 59.905 38.462 0.00 0.00 39.84 2.57
5966 8513 3.057526 GGCATGGTTAGAACTTGTTGGTC 60.058 47.826 0.00 0.00 0.00 4.02
6045 8592 3.611057 GCAATTTTGAGGACTGCAGTCAG 60.611 47.826 39.71 21.10 46.47 3.51
6046 8593 2.260844 TTTTGAGGACTGCAGTCAGG 57.739 50.000 39.71 8.83 46.47 3.86
6153 8706 1.033574 TTTTTACCCAGGTTGGTGCG 58.966 50.000 0.00 0.00 39.53 5.34
6411 9016 7.707035 CCTAGTCAGCGAGTTGAAGTATTTTAT 59.293 37.037 0.00 0.00 0.00 1.40
6417 9022 8.869897 CAGCGAGTTGAAGTATTTTATAACTCA 58.130 33.333 13.32 0.00 42.34 3.41
6515 9120 8.282455 TGTTGTGTTTCCTGTGTAAATCTTTA 57.718 30.769 0.00 0.00 0.00 1.85
6516 9121 8.740906 TGTTGTGTTTCCTGTGTAAATCTTTAA 58.259 29.630 0.00 0.00 0.00 1.52
6517 9122 9.233232 GTTGTGTTTCCTGTGTAAATCTTTAAG 57.767 33.333 0.00 0.00 0.00 1.85
6545 9150 2.648059 ACTATCTGGGTGCTTTCATGC 58.352 47.619 0.00 0.00 0.00 4.06
6563 9168 1.369091 GCTCCGATTGTTGTGCCGAT 61.369 55.000 0.00 0.00 0.00 4.18
6622 9305 9.862371 AGTTAGTACAACATAGAAATCTGTCTG 57.138 33.333 0.00 0.00 0.00 3.51
6623 9306 9.856488 GTTAGTACAACATAGAAATCTGTCTGA 57.144 33.333 0.00 0.00 0.00 3.27
6625 9308 8.939201 AGTACAACATAGAAATCTGTCTGATG 57.061 34.615 0.00 0.00 35.21 3.07
6626 9309 7.984050 AGTACAACATAGAAATCTGTCTGATGG 59.016 37.037 0.00 0.00 35.21 3.51
6627 9310 6.715280 ACAACATAGAAATCTGTCTGATGGT 58.285 36.000 0.00 0.00 35.21 3.55
6628 9311 6.820656 ACAACATAGAAATCTGTCTGATGGTC 59.179 38.462 0.00 0.00 35.21 4.02
6656 9339 0.397564 TCAGAGCTGATGTGCACCAA 59.602 50.000 15.69 0.00 34.14 3.67
6678 9361 1.539157 TTACAATGTTCGCCATGGCA 58.461 45.000 34.93 19.88 42.06 4.92
6695 9378 2.149555 CACAGTTGCATACGACGCA 58.850 52.632 0.00 0.00 37.68 5.24
6696 9379 0.510790 CACAGTTGCATACGACGCAA 59.489 50.000 6.77 6.77 46.67 4.85
6700 9383 3.738482 TTGCATACGACGCAACAAC 57.262 47.368 6.77 0.00 44.13 3.32
6710 9393 0.179150 ACGCAACAACACGCAACAAT 60.179 45.000 0.00 0.00 0.00 2.71
6724 9407 4.175516 CGCAACAATGACATTGCCTATTT 58.824 39.130 24.85 10.81 46.87 1.40
6733 9416 7.701539 ATGACATTGCCTATTTAAGACAACA 57.298 32.000 0.00 0.00 0.00 3.33
6803 9503 0.984230 TCCACCTTCAGGCCTTACAG 59.016 55.000 0.00 0.00 39.32 2.74
6844 9544 8.099364 ACCTTGAACAAGACATACAACATAAG 57.901 34.615 14.99 0.00 40.79 1.73
6846 9546 8.567948 CCTTGAACAAGACATACAACATAAGTT 58.432 33.333 14.99 0.00 40.79 2.66
6847 9547 9.599322 CTTGAACAAGACATACAACATAAGTTC 57.401 33.333 8.65 0.00 40.79 3.01
6848 9548 8.669946 TGAACAAGACATACAACATAAGTTCA 57.330 30.769 0.00 0.00 39.19 3.18
6849 9549 8.773645 TGAACAAGACATACAACATAAGTTCAG 58.226 33.333 0.00 0.00 37.35 3.02
6850 9550 8.902540 AACAAGACATACAACATAAGTTCAGA 57.097 30.769 0.00 0.00 35.28 3.27
6851 9551 8.311650 ACAAGACATACAACATAAGTTCAGAC 57.688 34.615 0.00 0.00 35.28 3.51
6852 9552 7.931407 ACAAGACATACAACATAAGTTCAGACA 59.069 33.333 0.00 0.00 35.28 3.41
6853 9553 8.939929 CAAGACATACAACATAAGTTCAGACAT 58.060 33.333 0.00 0.00 35.28 3.06
6854 9554 8.709386 AGACATACAACATAAGTTCAGACATC 57.291 34.615 0.00 0.00 35.28 3.06
6855 9555 8.314021 AGACATACAACATAAGTTCAGACATCA 58.686 33.333 0.00 0.00 35.28 3.07
6856 9556 8.484641 ACATACAACATAAGTTCAGACATCAG 57.515 34.615 0.00 0.00 35.28 2.90
6976 9687 5.178067 CCAAGAATCCAATGAACTGCAAAAC 59.822 40.000 0.00 0.00 0.00 2.43
7092 9808 5.377478 ACATCTCATGGTCTATCGAGTACA 58.623 41.667 0.00 0.00 33.60 2.90
7215 9931 7.463515 CGTCCAAACTTTTACATGGTTTTCAAC 60.464 37.037 0.00 0.00 34.50 3.18
7218 9934 8.174422 CCAAACTTTTACATGGTTTTCAACTTG 58.826 33.333 0.00 0.00 31.87 3.16
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 9.097946 TCCCTCAAGATGGATGCATATATATAG 57.902 37.037 0.00 0.00 0.00 1.31
1 2 9.097946 CTCCCTCAAGATGGATGCATATATATA 57.902 37.037 0.00 0.00 0.00 0.86
2 3 7.474507 GCTCCCTCAAGATGGATGCATATATAT 60.475 40.741 0.00 0.00 0.00 0.86
3 4 6.183361 GCTCCCTCAAGATGGATGCATATATA 60.183 42.308 0.00 0.00 0.00 0.86
4 5 5.397672 GCTCCCTCAAGATGGATGCATATAT 60.398 44.000 0.00 0.00 0.00 0.86
5 6 4.080695 GCTCCCTCAAGATGGATGCATATA 60.081 45.833 0.00 0.00 0.00 0.86
6 7 3.308259 GCTCCCTCAAGATGGATGCATAT 60.308 47.826 0.00 0.00 0.00 1.78
7 8 2.039480 GCTCCCTCAAGATGGATGCATA 59.961 50.000 0.00 0.00 0.00 3.14
8 9 1.202903 GCTCCCTCAAGATGGATGCAT 60.203 52.381 0.00 0.00 0.00 3.96
9 10 0.182061 GCTCCCTCAAGATGGATGCA 59.818 55.000 0.00 0.00 0.00 3.96
10 11 0.536915 GGCTCCCTCAAGATGGATGC 60.537 60.000 0.00 2.14 0.00 3.91
11 12 0.250209 CGGCTCCCTCAAGATGGATG 60.250 60.000 0.00 0.00 0.00 3.51
12 13 0.692419 ACGGCTCCCTCAAGATGGAT 60.692 55.000 0.00 0.00 0.00 3.41
13 14 1.306141 ACGGCTCCCTCAAGATGGA 60.306 57.895 0.00 0.00 0.00 3.41
14 15 1.153289 CACGGCTCCCTCAAGATGG 60.153 63.158 0.00 0.00 0.00 3.51
15 16 0.742281 CACACGGCTCCCTCAAGATG 60.742 60.000 0.00 0.00 0.00 2.90
16 17 1.194781 ACACACGGCTCCCTCAAGAT 61.195 55.000 0.00 0.00 0.00 2.40
17 18 0.541063 TACACACGGCTCCCTCAAGA 60.541 55.000 0.00 0.00 0.00 3.02
18 19 0.320374 TTACACACGGCTCCCTCAAG 59.680 55.000 0.00 0.00 0.00 3.02
19 20 0.320374 CTTACACACGGCTCCCTCAA 59.680 55.000 0.00 0.00 0.00 3.02
20 21 0.830444 ACTTACACACGGCTCCCTCA 60.830 55.000 0.00 0.00 0.00 3.86
21 22 0.108756 GACTTACACACGGCTCCCTC 60.109 60.000 0.00 0.00 0.00 4.30
22 23 0.830444 TGACTTACACACGGCTCCCT 60.830 55.000 0.00 0.00 0.00 4.20
23 24 1.669440 TGACTTACACACGGCTCCC 59.331 57.895 0.00 0.00 0.00 4.30
33 34 1.639722 TGCCTGCTAGGTGACTTACA 58.360 50.000 4.45 0.00 43.67 2.41
34 35 2.622436 CTTGCCTGCTAGGTGACTTAC 58.378 52.381 4.45 0.00 43.67 2.34
35 36 1.555075 CCTTGCCTGCTAGGTGACTTA 59.445 52.381 10.90 0.00 43.67 2.24
36 37 0.326264 CCTTGCCTGCTAGGTGACTT 59.674 55.000 10.90 0.00 43.67 3.01
38 39 0.107945 CTCCTTGCCTGCTAGGTGAC 60.108 60.000 17.16 0.00 39.41 3.67
39 40 1.267574 CCTCCTTGCCTGCTAGGTGA 61.268 60.000 18.76 2.92 39.41 4.02
40 41 1.222936 CCTCCTTGCCTGCTAGGTG 59.777 63.158 17.16 14.82 39.41 4.00
41 42 1.081092 TCCTCCTTGCCTGCTAGGT 59.919 57.895 17.16 0.00 39.41 3.08
42 43 1.267574 TGTCCTCCTTGCCTGCTAGG 61.268 60.000 12.62 12.62 39.69 3.02
43 44 0.177604 CTGTCCTCCTTGCCTGCTAG 59.822 60.000 0.00 0.00 0.00 3.42
44 45 1.903877 GCTGTCCTCCTTGCCTGCTA 61.904 60.000 0.00 0.00 0.00 3.49
45 46 3.076092 CTGTCCTCCTTGCCTGCT 58.924 61.111 0.00 0.00 0.00 4.24
46 47 2.749441 GCTGTCCTCCTTGCCTGC 60.749 66.667 0.00 0.00 0.00 4.85
47 48 2.045536 GGCTGTCCTCCTTGCCTG 60.046 66.667 0.00 0.00 41.92 4.85
58 59 0.681243 GGGGTGAAATGGAGGCTGTC 60.681 60.000 0.00 0.00 0.00 3.51
59 60 1.384191 GGGGTGAAATGGAGGCTGT 59.616 57.895 0.00 0.00 0.00 4.40
60 61 0.967380 GTGGGGTGAAATGGAGGCTG 60.967 60.000 0.00 0.00 0.00 4.85
61 62 1.384191 GTGGGGTGAAATGGAGGCT 59.616 57.895 0.00 0.00 0.00 4.58
62 63 1.682344 GGTGGGGTGAAATGGAGGC 60.682 63.158 0.00 0.00 0.00 4.70
63 64 0.409484 AAGGTGGGGTGAAATGGAGG 59.591 55.000 0.00 0.00 0.00 4.30
64 65 1.075374 TCAAGGTGGGGTGAAATGGAG 59.925 52.381 0.00 0.00 0.00 3.86
65 66 1.153539 TCAAGGTGGGGTGAAATGGA 58.846 50.000 0.00 0.00 0.00 3.41
66 67 1.895131 CTTCAAGGTGGGGTGAAATGG 59.105 52.381 0.00 0.00 33.52 3.16
67 68 2.875296 TCTTCAAGGTGGGGTGAAATG 58.125 47.619 0.00 0.00 33.52 2.32
68 69 3.230976 GTTCTTCAAGGTGGGGTGAAAT 58.769 45.455 0.00 0.00 33.52 2.17
69 70 2.024846 TGTTCTTCAAGGTGGGGTGAAA 60.025 45.455 0.00 0.00 33.52 2.69
70 71 1.566703 TGTTCTTCAAGGTGGGGTGAA 59.433 47.619 0.00 0.00 32.91 3.18
71 72 1.133915 GTGTTCTTCAAGGTGGGGTGA 60.134 52.381 0.00 0.00 0.00 4.02
72 73 1.318576 GTGTTCTTCAAGGTGGGGTG 58.681 55.000 0.00 0.00 0.00 4.61
73 74 0.185175 GGTGTTCTTCAAGGTGGGGT 59.815 55.000 0.00 0.00 0.00 4.95
97 98 0.606604 TCCCTTGCTCTTGGACGTAC 59.393 55.000 0.00 0.00 0.00 3.67
110 111 1.806542 CGTGGATGTGTTCTTCCCTTG 59.193 52.381 0.00 0.00 37.17 3.61
113 114 0.321653 AGCGTGGATGTGTTCTTCCC 60.322 55.000 0.00 0.00 37.17 3.97
142 143 2.289756 GCTTCTCCCTTCTTCGTCCTTT 60.290 50.000 0.00 0.00 0.00 3.11
148 149 3.750828 GAGGCTTCTCCCTTCTTCG 57.249 57.895 0.00 0.00 34.69 3.79
161 162 2.118513 ACGTCAGAGGTGGAGGCT 59.881 61.111 0.00 0.00 0.00 4.58
171 172 2.997315 CCCTGAGGCCACGTCAGA 60.997 66.667 19.43 0.00 45.62 3.27
182 183 3.465403 ACCAGCGCTAGCCCTGAG 61.465 66.667 27.26 19.48 46.67 3.35
201 202 1.536418 TGTGGAGTGGGAGGAGGTG 60.536 63.158 0.00 0.00 0.00 4.00
219 220 2.249139 GGAGGTGGTTGAGTAGTCACT 58.751 52.381 0.00 0.00 37.87 3.41
226 227 0.974383 CTAACGGGAGGTGGTTGAGT 59.026 55.000 0.00 0.00 0.00 3.41
228 229 3.152662 ACTAACGGGAGGTGGTTGA 57.847 52.632 0.00 0.00 38.49 3.18
240 241 6.503589 TTATTCATTGGTTCCCAACTAACG 57.496 37.500 0.00 0.00 46.95 3.18
241 242 8.749354 AGATTTATTCATTGGTTCCCAACTAAC 58.251 33.333 0.00 0.00 46.95 2.34
266 267 5.357257 AGACTGGTGGCGTTATTTATACAG 58.643 41.667 0.00 0.00 0.00 2.74
278 279 0.108615 CTTGACCTAGACTGGTGGCG 60.109 60.000 0.00 0.00 41.00 5.69
284 285 2.983229 AGCATTGCTTGACCTAGACTG 58.017 47.619 5.03 0.00 33.89 3.51
290 291 3.636300 TGTTTTGTAGCATTGCTTGACCT 59.364 39.130 17.71 0.00 40.44 3.85
314 315 6.811634 TTGGGCATGAATGGATTCTTAATT 57.188 33.333 0.00 0.00 37.67 1.40
315 316 6.687139 GCTTTGGGCATGAATGGATTCTTAAT 60.687 38.462 0.00 0.00 41.35 1.40
327 328 1.838112 AGAATCGCTTTGGGCATGAA 58.162 45.000 0.00 0.00 41.91 2.57
333 334 2.093447 ACCTCAGTAGAATCGCTTTGGG 60.093 50.000 0.00 0.00 0.00 4.12
336 337 5.790593 TGTTAACCTCAGTAGAATCGCTTT 58.209 37.500 2.48 0.00 0.00 3.51
338 339 5.401531 TTGTTAACCTCAGTAGAATCGCT 57.598 39.130 2.48 0.00 0.00 4.93
339 340 7.652105 TGATATTGTTAACCTCAGTAGAATCGC 59.348 37.037 2.48 0.00 0.00 4.58
347 348 7.056635 CCAGGAATGATATTGTTAACCTCAGT 58.943 38.462 2.48 0.64 0.00 3.41
356 357 6.463049 CGAGTCTACCCAGGAATGATATTGTT 60.463 42.308 0.00 0.00 0.00 2.83
357 358 5.011125 CGAGTCTACCCAGGAATGATATTGT 59.989 44.000 0.00 0.00 0.00 2.71
359 360 5.394738 TCGAGTCTACCCAGGAATGATATT 58.605 41.667 0.00 0.00 0.00 1.28
366 367 3.056107 CACAAATCGAGTCTACCCAGGAA 60.056 47.826 0.00 0.00 0.00 3.36
373 374 2.850647 GGCGTACACAAATCGAGTCTAC 59.149 50.000 0.00 0.00 0.00 2.59
375 376 1.403780 GGGCGTACACAAATCGAGTCT 60.404 52.381 0.00 0.00 0.00 3.24
378 379 1.087771 GGGGGCGTACACAAATCGAG 61.088 60.000 0.00 0.00 0.00 4.04
380 381 1.078708 AGGGGGCGTACACAAATCG 60.079 57.895 0.00 0.00 0.00 3.34
382 383 1.301954 GGAGGGGGCGTACACAAAT 59.698 57.895 0.00 0.00 0.00 2.32
385 386 1.493854 AATTGGAGGGGGCGTACACA 61.494 55.000 0.00 0.00 0.00 3.72
386 387 1.029947 CAATTGGAGGGGGCGTACAC 61.030 60.000 0.00 0.00 0.00 2.90
389 390 1.513858 ATACAATTGGAGGGGGCGTA 58.486 50.000 10.83 0.00 0.00 4.42
401 414 9.166222 TCCATTGGTGAGTATAGGTATACAATT 57.834 33.333 5.01 0.00 40.70 2.32
439 452 9.914131 GCTCCCAATCAAAGGATATATAAAAAC 57.086 33.333 0.00 0.00 32.09 2.43
447 460 8.112183 CCTTATAAGCTCCCAATCAAAGGATAT 58.888 37.037 6.99 0.00 34.23 1.63
448 461 7.461749 CCTTATAAGCTCCCAATCAAAGGATA 58.538 38.462 6.99 0.00 34.23 2.59
449 462 6.310149 CCTTATAAGCTCCCAATCAAAGGAT 58.690 40.000 6.99 0.00 34.23 3.24
450 463 5.399038 CCCTTATAAGCTCCCAATCAAAGGA 60.399 44.000 6.99 0.00 34.23 3.36
451 464 4.829492 CCCTTATAAGCTCCCAATCAAAGG 59.171 45.833 6.99 0.00 0.00 3.11
457 470 3.659686 AGATGCCCTTATAAGCTCCCAAT 59.340 43.478 6.99 0.00 0.00 3.16
461 474 5.012148 TGTTAGAGATGCCCTTATAAGCTCC 59.988 44.000 6.99 0.00 0.00 4.70
483 496 6.444704 TGGACTTTTAGGATAGGAGATCTGT 58.555 40.000 0.00 0.00 0.00 3.41
488 501 7.070074 GTGATTCTGGACTTTTAGGATAGGAGA 59.930 40.741 0.00 0.00 0.00 3.71
490 503 6.903534 AGTGATTCTGGACTTTTAGGATAGGA 59.096 38.462 0.00 0.00 0.00 2.94
513 526 0.698818 AAGCCGATGGGAAAAGGAGT 59.301 50.000 0.00 0.00 34.06 3.85
520 534 0.035439 GGTGAAGAAGCCGATGGGAA 60.035 55.000 0.00 0.00 34.06 3.97
526 540 1.056660 AAAGGAGGTGAAGAAGCCGA 58.943 50.000 0.00 0.00 0.00 5.54
539 553 3.653344 TGACGAAGACATGACAAAGGAG 58.347 45.455 0.00 0.00 0.00 3.69
540 554 3.744238 TGACGAAGACATGACAAAGGA 57.256 42.857 0.00 0.00 0.00 3.36
543 557 5.342806 GTCATTGACGAAGACATGACAAA 57.657 39.130 0.00 0.00 38.88 2.83
544 558 4.990543 GTCATTGACGAAGACATGACAA 57.009 40.909 0.00 0.00 38.88 3.18
560 574 1.339727 GGACAAGGGCTTACCGTCATT 60.340 52.381 0.00 0.00 46.96 2.57
567 581 0.690762 TCAGGTGGACAAGGGCTTAC 59.309 55.000 0.00 0.00 0.00 2.34
573 587 2.576191 TCCCTAAATCAGGTGGACAAGG 59.424 50.000 0.00 0.00 43.80 3.61
575 589 4.290985 TGAATCCCTAAATCAGGTGGACAA 59.709 41.667 0.00 0.00 43.80 3.18
579 593 4.796606 ACATGAATCCCTAAATCAGGTGG 58.203 43.478 0.00 0.00 43.80 4.61
580 594 6.000219 CCTACATGAATCCCTAAATCAGGTG 59.000 44.000 0.00 0.00 43.80 4.00
581 595 5.456763 GCCTACATGAATCCCTAAATCAGGT 60.457 44.000 0.00 0.00 43.80 4.00
582 596 5.006386 GCCTACATGAATCCCTAAATCAGG 58.994 45.833 0.00 0.00 45.07 3.86
596 610 1.279496 AGCCTCAAGTGCCTACATGA 58.721 50.000 0.00 0.00 33.84 3.07
607 621 3.600388 ACACCTAAATCGAAGCCTCAAG 58.400 45.455 0.00 0.00 0.00 3.02
608 622 3.007506 TGACACCTAAATCGAAGCCTCAA 59.992 43.478 0.00 0.00 0.00 3.02
623 648 1.346722 CCTAAACCCGAGTTGACACCT 59.653 52.381 0.00 0.00 35.97 4.00
635 660 6.572182 AACTCTAAATCCTACCCTAAACCC 57.428 41.667 0.00 0.00 0.00 4.11
644 669 9.615295 GAGTCGATATGAAACTCTAAATCCTAC 57.385 37.037 0.00 0.00 37.14 3.18
645 670 8.504815 CGAGTCGATATGAAACTCTAAATCCTA 58.495 37.037 6.73 0.00 37.79 2.94
655 680 4.515944 CCCTAGTCGAGTCGATATGAAACT 59.484 45.833 19.75 11.91 38.42 2.66
661 686 3.181457 TGACACCCTAGTCGAGTCGATAT 60.181 47.826 19.75 13.06 41.41 1.63
664 689 0.322648 TGACACCCTAGTCGAGTCGA 59.677 55.000 12.09 12.09 41.41 4.20
665 690 1.162698 TTGACACCCTAGTCGAGTCG 58.837 55.000 6.09 6.09 41.41 4.18
666 691 3.870633 AATTGACACCCTAGTCGAGTC 57.129 47.619 0.00 0.00 41.41 3.36
672 697 5.073965 TGAAACCCTTAATTGACACCCTAGT 59.926 40.000 0.00 0.00 0.00 2.57
700 725 5.124457 CACTGCATTATAGGCACTTTGAGTT 59.876 40.000 0.00 0.00 41.75 3.01
741 767 6.201044 CACTACTTATAGGCACAACATAGCAC 59.799 42.308 0.00 0.00 32.08 4.40
751 777 4.349501 GACGTGACACTACTTATAGGCAC 58.650 47.826 3.68 0.00 32.08 5.01
753 779 3.379372 TGGACGTGACACTACTTATAGGC 59.621 47.826 3.68 0.00 32.08 3.93
754 780 4.495349 CGTGGACGTGACACTACTTATAGG 60.495 50.000 15.46 0.00 36.71 2.57
755 781 4.585364 CGTGGACGTGACACTACTTATAG 58.415 47.826 15.46 0.00 36.71 1.31
756 782 3.181507 GCGTGGACGTGACACTACTTATA 60.182 47.826 15.46 0.00 42.22 0.98
791 845 1.006922 GAAAGTGGCTGCAACCTGC 60.007 57.895 7.82 0.00 45.29 4.85
792 846 1.283793 CGAAAGTGGCTGCAACCTG 59.716 57.895 7.82 0.00 0.00 4.00
793 847 2.555547 GCGAAAGTGGCTGCAACCT 61.556 57.895 7.82 0.00 0.00 3.50
794 848 2.050077 GCGAAAGTGGCTGCAACC 60.050 61.111 2.93 0.00 0.00 3.77
795 849 2.427410 CGCGAAAGTGGCTGCAAC 60.427 61.111 0.00 0.00 38.12 4.17
809 863 2.321060 CAAAGATGCTACGCCGCG 59.679 61.111 12.14 12.14 0.00 6.46
863 917 1.098712 TGTTTGGCGTGGGTCTGTTC 61.099 55.000 0.00 0.00 0.00 3.18
864 918 0.681564 TTGTTTGGCGTGGGTCTGTT 60.682 50.000 0.00 0.00 0.00 3.16
865 919 1.077357 TTGTTTGGCGTGGGTCTGT 60.077 52.632 0.00 0.00 0.00 3.41
866 920 1.654220 CTTGTTTGGCGTGGGTCTG 59.346 57.895 0.00 0.00 0.00 3.51
867 921 2.193536 GCTTGTTTGGCGTGGGTCT 61.194 57.895 0.00 0.00 0.00 3.85
869 923 2.441164 TGCTTGTTTGGCGTGGGT 60.441 55.556 0.00 0.00 0.00 4.51
871 925 1.140589 TTGTGCTTGTTTGGCGTGG 59.859 52.632 0.00 0.00 0.00 4.94
873 927 1.140804 GGTTGTGCTTGTTTGGCGT 59.859 52.632 0.00 0.00 0.00 5.68
874 928 1.943693 CGGTTGTGCTTGTTTGGCG 60.944 57.895 0.00 0.00 0.00 5.69
875 929 1.591327 CCGGTTGTGCTTGTTTGGC 60.591 57.895 0.00 0.00 0.00 4.52
876 930 0.457851 TTCCGGTTGTGCTTGTTTGG 59.542 50.000 0.00 0.00 0.00 3.28
877 931 2.285827 TTTCCGGTTGTGCTTGTTTG 57.714 45.000 0.00 0.00 0.00 2.93
878 932 3.132111 AGAATTTCCGGTTGTGCTTGTTT 59.868 39.130 0.00 0.00 0.00 2.83
879 933 2.693074 AGAATTTCCGGTTGTGCTTGTT 59.307 40.909 0.00 0.00 0.00 2.83
881 935 2.351738 GGAGAATTTCCGGTTGTGCTTG 60.352 50.000 0.00 0.00 35.91 4.01
892 954 1.546029 GTTGCTGGGTGGAGAATTTCC 59.454 52.381 0.00 1.09 46.98 3.13
910 972 0.104304 GGAGTGTGACCGTGTGAGTT 59.896 55.000 0.00 0.00 0.00 3.01
998 1085 0.385751 CGCGAAGAGGAGGAGCATTA 59.614 55.000 0.00 0.00 0.00 1.90
1138 1225 4.171234 CACAGAGGGGGATACTTGGATAT 58.829 47.826 0.00 0.00 0.00 1.63
1142 1229 0.181350 GCACAGAGGGGGATACTTGG 59.819 60.000 0.00 0.00 0.00 3.61
1155 1247 2.747686 GGGGGAACGAAGCACAGA 59.252 61.111 0.00 0.00 0.00 3.41
1181 1273 3.795041 CCCCCAGCCAGCAGAGAG 61.795 72.222 0.00 0.00 0.00 3.20
1231 1576 2.872038 GCACGACAAGAGGGTGAAATCT 60.872 50.000 0.00 0.00 33.58 2.40
1290 1638 0.312102 GACAAGGGAGCAGCAAACAC 59.688 55.000 0.00 0.00 0.00 3.32
1304 1652 5.220548 CCAACGAGATGATAAGCAAGACAAG 60.221 44.000 0.00 0.00 0.00 3.16
1305 1653 4.631377 CCAACGAGATGATAAGCAAGACAA 59.369 41.667 0.00 0.00 0.00 3.18
1306 1654 4.081697 TCCAACGAGATGATAAGCAAGACA 60.082 41.667 0.00 0.00 0.00 3.41
1307 1655 4.433615 TCCAACGAGATGATAAGCAAGAC 58.566 43.478 0.00 0.00 0.00 3.01
1308 1656 4.736126 TCCAACGAGATGATAAGCAAGA 57.264 40.909 0.00 0.00 0.00 3.02
1345 1693 6.655078 AGAAAGGAAAACACAAGCATACAT 57.345 33.333 0.00 0.00 0.00 2.29
1346 1694 6.463995 AAGAAAGGAAAACACAAGCATACA 57.536 33.333 0.00 0.00 0.00 2.29
1356 1704 3.535280 GGCACCAAAGAAAGGAAAACA 57.465 42.857 0.00 0.00 0.00 2.83
1400 1748 4.473520 CCAATCCCACGGCTCGCT 62.474 66.667 0.00 0.00 0.00 4.93
1461 1809 9.940166 CCAAATTCCTTTTTCTTTTCATTTCTG 57.060 29.630 0.00 0.00 0.00 3.02
1467 1815 9.762933 CTATGACCAAATTCCTTTTTCTTTTCA 57.237 29.630 0.00 0.00 0.00 2.69
1468 1816 9.764363 ACTATGACCAAATTCCTTTTTCTTTTC 57.236 29.630 0.00 0.00 0.00 2.29
1476 1824 8.539544 CCCAATTTACTATGACCAAATTCCTTT 58.460 33.333 0.00 0.00 31.27 3.11
1478 1826 7.124147 CACCCAATTTACTATGACCAAATTCCT 59.876 37.037 0.00 0.00 31.27 3.36
1506 1854 7.750229 TGGCACCTAAGAAATCATATCAATC 57.250 36.000 0.00 0.00 0.00 2.67
1507 1855 7.014615 GGTTGGCACCTAAGAAATCATATCAAT 59.985 37.037 0.00 0.00 40.44 2.57
1508 1856 6.321181 GGTTGGCACCTAAGAAATCATATCAA 59.679 38.462 0.00 0.00 40.44 2.57
1509 1857 5.827797 GGTTGGCACCTAAGAAATCATATCA 59.172 40.000 0.00 0.00 40.44 2.15
1510 1858 5.241728 GGGTTGGCACCTAAGAAATCATATC 59.758 44.000 6.16 0.00 43.65 1.63
1631 1979 1.416243 TTGTGACCGTCACCCTAACT 58.584 50.000 25.39 0.00 46.40 2.24
1713 2061 5.759763 AGAATATGCGATCAACACAGCATTA 59.240 36.000 8.49 0.00 46.75 1.90
1714 2062 4.577693 AGAATATGCGATCAACACAGCATT 59.422 37.500 8.49 0.00 46.75 3.56
1716 2064 3.534554 AGAATATGCGATCAACACAGCA 58.465 40.909 0.00 0.00 44.13 4.41
1717 2065 3.806521 AGAGAATATGCGATCAACACAGC 59.193 43.478 0.00 0.00 0.00 4.40
1718 2066 6.212235 ACTAGAGAATATGCGATCAACACAG 58.788 40.000 0.00 0.00 0.00 3.66
1720 2068 8.749841 ATAACTAGAGAATATGCGATCAACAC 57.250 34.615 0.00 0.00 0.00 3.32
1724 2072 9.449719 TGTCTATAACTAGAGAATATGCGATCA 57.550 33.333 0.00 0.00 34.63 2.92
1728 2076 8.394877 CCTCTGTCTATAACTAGAGAATATGCG 58.605 40.741 0.00 0.00 36.25 4.73
1756 2104 5.858475 AGCACAAAAAGTTCTATCGATTCG 58.142 37.500 1.71 0.00 0.00 3.34
1883 2249 7.125053 GGTTTTCCAAATATAAGGTTCCCATCA 59.875 37.037 0.00 0.00 40.31 3.07
1917 2283 4.502962 AGTTCTCAGAGCAAGATAGTTGC 58.497 43.478 1.38 1.38 45.22 4.17
1986 2352 1.073199 CACCCCCTCTGTGACCAAC 59.927 63.158 0.00 0.00 35.74 3.77
1994 2360 1.222936 GATGCAGACACCCCCTCTG 59.777 63.158 0.00 0.00 38.59 3.35
2061 2427 8.844244 GCAGGTCATCACAAAATCTATAATTCT 58.156 33.333 0.00 0.00 0.00 2.40
2165 2532 9.743057 CAAAATACCTTTCACTAATGAACAACA 57.257 29.630 0.00 0.00 44.66 3.33
2203 2570 2.331194 CTGCAACAAACATAAGGCAGC 58.669 47.619 0.00 0.00 41.71 5.25
2230 2597 8.745590 AGGTTTTACGTGAATTAGCCATTTAAT 58.254 29.630 0.00 0.00 0.00 1.40
2239 2606 8.889717 ACCATGAATAGGTTTTACGTGAATTAG 58.110 33.333 0.00 0.00 35.33 1.73
2302 2669 7.062322 AGCAAAAGGATGACATGTATTGGATA 58.938 34.615 0.00 0.00 0.00 2.59
2303 2670 5.895534 AGCAAAAGGATGACATGTATTGGAT 59.104 36.000 0.00 0.00 0.00 3.41
2304 2671 5.263599 AGCAAAAGGATGACATGTATTGGA 58.736 37.500 0.00 0.00 0.00 3.53
2305 2672 5.587388 AGCAAAAGGATGACATGTATTGG 57.413 39.130 0.00 0.00 0.00 3.16
2306 2673 8.246180 AGTTTAGCAAAAGGATGACATGTATTG 58.754 33.333 0.00 0.00 0.00 1.90
2307 2674 8.353423 AGTTTAGCAAAAGGATGACATGTATT 57.647 30.769 0.00 0.00 0.00 1.89
2308 2675 7.944729 AGTTTAGCAAAAGGATGACATGTAT 57.055 32.000 0.00 0.00 0.00 2.29
2309 2676 7.446931 TGAAGTTTAGCAAAAGGATGACATGTA 59.553 33.333 0.00 0.00 0.00 2.29
2382 2749 4.026052 CTCCCCTGGCATTACAAGAAATT 58.974 43.478 0.00 0.00 0.00 1.82
2550 2932 8.877808 AAGAGAACAGGAAAAACATGAAATTC 57.122 30.769 0.00 0.04 34.19 2.17
2565 2947 5.124617 GCCTTGGAAGAATAAAGAGAACAGG 59.875 44.000 0.00 0.00 0.00 4.00
2584 2966 1.607628 GCTATCTGGATGCTTGCCTTG 59.392 52.381 0.00 0.00 0.00 3.61
2930 3312 7.771183 TGCATAAAAAGAAATAGTTAGCAGGG 58.229 34.615 0.00 0.00 0.00 4.45
2939 3321 9.860898 AAAAGTAGCCTGCATAAAAAGAAATAG 57.139 29.630 0.00 0.00 0.00 1.73
2948 3330 5.709631 TGACATGAAAAGTAGCCTGCATAAA 59.290 36.000 0.00 0.00 0.00 1.40
2952 3334 3.138884 TGACATGAAAAGTAGCCTGCA 57.861 42.857 0.00 0.00 0.00 4.41
3247 3630 9.013490 CAGAATGTATTATGTTGCAAGCTTAAC 57.987 33.333 0.00 1.34 0.00 2.01
3392 3775 8.964533 ATATCTACAGAGAACCATCTAACCAT 57.035 34.615 0.00 0.00 35.54 3.55
3420 3803 7.118535 ACAAACAAAACATACAGGAAAACAACC 59.881 33.333 0.00 0.00 0.00 3.77
3553 3936 2.575532 TGAAGAAGTTGCACCAGAAGG 58.424 47.619 0.00 0.00 42.21 3.46
3655 4038 3.938963 GAGGTCTTTGTGTGACTTTGTCA 59.061 43.478 0.00 0.00 40.50 3.58
3700 4083 5.740569 CACATAAGATTTGGAAATGAGCACG 59.259 40.000 0.00 0.00 0.00 5.34
3861 4245 5.130975 ACACTGCTGGATTATGATAACCTCA 59.869 40.000 0.00 0.00 38.53 3.86
3886 4270 5.984926 AGACACAAACAACATGCATTTTAGG 59.015 36.000 0.00 0.00 0.00 2.69
3963 4348 8.322091 AGTTAAGCAAGTACAAGATGTTAGGAT 58.678 33.333 0.00 0.00 0.00 3.24
3991 4376 3.142174 GGGACTGAGAACCAACTTTCAG 58.858 50.000 0.00 0.00 42.07 3.02
4042 4428 7.040686 ACGTTTCTGCATAGGTTAACAAGAATT 60.041 33.333 8.10 0.00 0.00 2.17
4172 4558 4.079253 TCAGGCTTCTTAAATGGTCCAAC 58.921 43.478 0.00 0.00 0.00 3.77
4190 4576 8.276325 GTGAGCATAATAAATTAAGACGTCAGG 58.724 37.037 19.50 0.00 0.00 3.86
4195 4581 7.618442 ACACGTGAGCATAATAAATTAAGACG 58.382 34.615 25.01 0.00 0.00 4.18
4315 6852 6.047870 AGCTAACTGATGTTATTGCTCAGAG 58.952 40.000 5.84 0.00 36.22 3.35
4475 7012 4.274459 GCAGAGTGCCAGACATAAAATAGG 59.726 45.833 0.00 0.00 37.42 2.57
4616 7161 4.781934 AGATTACCTTGTCCATAAGCCAC 58.218 43.478 0.00 0.00 0.00 5.01
4718 7263 4.699637 AGTTTGTCCACACGATTTCTACA 58.300 39.130 0.00 0.00 0.00 2.74
4824 7369 3.433306 AATGGGCTAACTGTAGTTGCA 57.567 42.857 7.50 0.00 38.90 4.08
4836 7381 5.139727 CCTATCAATGTTCCAAATGGGCTA 58.860 41.667 0.00 0.00 36.21 3.93
4852 7397 5.694006 CACGTTTTTGCATTTTCCCTATCAA 59.306 36.000 0.00 0.00 0.00 2.57
4860 7405 6.963805 TGAATTTTCCACGTTTTTGCATTTTC 59.036 30.769 0.00 0.00 0.00 2.29
5108 7653 2.094700 GGAACGGCTCCCAAAAATCTTC 60.095 50.000 0.00 0.00 38.44 2.87
5172 7717 0.465642 GGGTGAAATCTAAGGCCCCG 60.466 60.000 0.00 0.00 0.00 5.73
5189 7734 2.656947 TCAGTTTGAAGGTTGAGGGG 57.343 50.000 0.00 0.00 0.00 4.79
5208 7754 5.782925 AGGGTCAGACATCCTTAGACTTAT 58.217 41.667 2.17 0.00 0.00 1.73
5324 7871 7.781056 TCTTAAATTTCTTCAAAACCACTGCT 58.219 30.769 0.00 0.00 0.00 4.24
5340 7887 5.011943 TGCCACTTGCCAGAATCTTAAATTT 59.988 36.000 0.00 0.00 40.16 1.82
5460 8007 5.106157 GCCTTATTGTTGCAGTCAATGTACT 60.106 40.000 21.37 5.99 36.92 2.73
5466 8013 6.588719 ATTTAGCCTTATTGTTGCAGTCAA 57.411 33.333 8.44 8.44 0.00 3.18
5696 8243 7.981142 ACAAAATTTCACAAAGAGAAGTACGA 58.019 30.769 0.00 0.00 0.00 3.43
5743 8290 6.867662 ACTGTAAGAGACAAGGAACAAATG 57.132 37.500 0.00 0.00 37.70 2.32
5784 8331 7.042725 GGAACACCAACAATTTAGAGAAAAAGC 60.043 37.037 0.00 0.00 0.00 3.51
5816 8363 8.093927 GGAAATTTAGAATGACAAAATGGTGGA 58.906 33.333 0.00 0.00 0.00 4.02
5817 8364 8.096414 AGGAAATTTAGAATGACAAAATGGTGG 58.904 33.333 0.00 0.00 0.00 4.61
5818 8365 9.492973 AAGGAAATTTAGAATGACAAAATGGTG 57.507 29.630 0.00 0.00 0.00 4.17
5922 8469 9.914834 ATGCCACTGAACCTACTTATTTATTTA 57.085 29.630 0.00 0.00 0.00 1.40
5966 8513 0.531532 CCCCTAGACGCATCAGCTTG 60.532 60.000 0.00 0.00 39.10 4.01
6153 8706 1.449246 AGCAGCATCCACTCGCTTC 60.449 57.895 0.00 0.00 35.96 3.86
6168 8721 1.741525 GTTGCCCTTCTTTGCAGCA 59.258 52.632 0.00 0.00 38.41 4.41
6233 8786 3.347216 AGGCGTAATGAGCAACTTCATT 58.653 40.909 6.50 6.50 46.53 2.57
6323 8876 4.858692 CGCACATAAAGATGAAAAAGGGTG 59.141 41.667 0.00 0.00 36.48 4.61
6411 9016 6.070824 TGGAATGCTGACTTGTATCTGAGTTA 60.071 38.462 0.00 0.00 0.00 2.24
6417 9022 3.199508 AGCTGGAATGCTGACTTGTATCT 59.800 43.478 0.00 0.00 42.33 1.98
6515 9120 3.181461 GCACCCAGATAGTAGCACATCTT 60.181 47.826 0.00 0.00 28.88 2.40
6516 9121 2.366916 GCACCCAGATAGTAGCACATCT 59.633 50.000 0.00 0.00 31.58 2.90
6517 9122 2.366916 AGCACCCAGATAGTAGCACATC 59.633 50.000 0.00 0.00 0.00 3.06
6545 9150 1.860950 CTATCGGCACAACAATCGGAG 59.139 52.381 0.00 0.00 0.00 4.63
6600 9283 7.984050 CCATCAGACAGATTTCTATGTTGTACT 59.016 37.037 0.00 0.00 33.72 2.73
6601 9284 7.766278 ACCATCAGACAGATTTCTATGTTGTAC 59.234 37.037 0.00 0.00 33.72 2.90
6656 9339 3.056250 TGCCATGGCGAACATTGTAATTT 60.056 39.130 30.87 0.00 45.51 1.82
6678 9361 2.907431 TTGCGTCGTATGCAACTGT 58.093 47.368 9.48 0.00 44.37 3.55
6689 9372 2.022069 TTGCGTGTTGTTGCGTCG 59.978 55.556 0.00 0.00 0.00 5.12
6691 9374 0.179150 ATTGTTGCGTGTTGTTGCGT 60.179 45.000 0.00 0.00 0.00 5.24
6692 9375 0.226734 CATTGTTGCGTGTTGTTGCG 59.773 50.000 0.00 0.00 0.00 4.85
6694 9377 2.524034 TGTCATTGTTGCGTGTTGTTG 58.476 42.857 0.00 0.00 0.00 3.33
6695 9378 2.929531 TGTCATTGTTGCGTGTTGTT 57.070 40.000 0.00 0.00 0.00 2.83
6696 9379 3.114809 CAATGTCATTGTTGCGTGTTGT 58.885 40.909 16.15 0.00 35.57 3.32
6697 9380 2.097299 GCAATGTCATTGTTGCGTGTTG 60.097 45.455 23.27 0.00 40.95 3.33
6698 9381 2.126467 GCAATGTCATTGTTGCGTGTT 58.874 42.857 23.27 0.00 40.95 3.32
6699 9382 1.769733 GCAATGTCATTGTTGCGTGT 58.230 45.000 23.27 0.00 40.95 4.49
6724 9407 6.183361 TGGTTATAGGGGTTGTTGTTGTCTTA 60.183 38.462 0.00 0.00 0.00 2.10
6733 9416 5.719563 CCAAAATCTGGTTATAGGGGTTGTT 59.280 40.000 0.00 0.00 40.78 2.83
6803 9503 4.315803 TCAAGGTCGAAGGAAATGTCTTC 58.684 43.478 0.00 0.00 37.76 2.87
6848 9548 1.198713 AGAATGGCGGACTGATGTCT 58.801 50.000 0.00 0.00 42.54 3.41
6849 9549 2.159099 TGTAGAATGGCGGACTGATGTC 60.159 50.000 0.00 0.00 42.22 3.06
6850 9550 1.831106 TGTAGAATGGCGGACTGATGT 59.169 47.619 0.00 0.00 0.00 3.06
6851 9551 2.101415 TCTGTAGAATGGCGGACTGATG 59.899 50.000 0.00 0.00 0.00 3.07
6852 9552 2.388735 TCTGTAGAATGGCGGACTGAT 58.611 47.619 0.00 0.00 0.00 2.90
6853 9553 1.847328 TCTGTAGAATGGCGGACTGA 58.153 50.000 0.00 0.00 0.00 3.41
6854 9554 2.271800 GTTCTGTAGAATGGCGGACTG 58.728 52.381 0.00 0.00 36.33 3.51
6855 9555 1.899814 TGTTCTGTAGAATGGCGGACT 59.100 47.619 0.00 0.00 36.33 3.85
6856 9556 2.380084 TGTTCTGTAGAATGGCGGAC 57.620 50.000 0.00 0.00 36.33 4.79
6976 9687 3.836146 TCCTTGATTCCTTGGCATATGG 58.164 45.455 4.56 0.00 0.00 2.74
7092 9808 7.949690 TTTGGATCACAAGATGAGAAATGAT 57.050 32.000 0.00 0.00 41.91 2.45
7161 9877 7.332430 AGGCACATGACACATTTGATTTTTATG 59.668 33.333 0.00 0.00 0.00 1.90


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.