Multiple sequence alignment - TraesCS4B01G083900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G083900 chr4B 100.000 8366 0 0 1 8366 82414361 82422726 0.000000e+00 15450.0
1 TraesCS4B01G083900 chr4B 96.933 163 5 0 2336 2498 409588564 409588402 2.980000e-69 274.0
2 TraesCS4B01G083900 chr4B 92.632 190 8 5 2336 2520 488893286 488893098 1.380000e-67 268.0
3 TraesCS4B01G083900 chr4B 95.312 64 2 1 2980 3042 82417266 82417329 5.340000e-17 100.0
4 TraesCS4B01G083900 chr4B 95.312 64 2 1 2906 2969 82417340 82417402 5.340000e-17 100.0
5 TraesCS4B01G083900 chr4D 92.633 2905 119 36 4816 7693 55354188 55357024 0.000000e+00 4091.0
6 TraesCS4B01G083900 chr4D 91.503 1424 69 17 968 2354 55351050 55352458 0.000000e+00 1912.0
7 TraesCS4B01G083900 chr4D 94.767 516 18 5 7857 8366 55357317 55357829 0.000000e+00 795.0
8 TraesCS4B01G083900 chr4D 94.549 477 22 3 3272 3745 55353174 55353649 0.000000e+00 734.0
9 TraesCS4B01G083900 chr4D 94.785 441 18 5 4376 4814 55353641 55354078 0.000000e+00 682.0
10 TraesCS4B01G083900 chr4D 90.000 470 30 9 2479 2943 55352540 55352997 7.230000e-165 592.0
11 TraesCS4B01G083900 chr4D 88.922 334 31 6 1 332 364038265 364037936 2.810000e-109 407.0
12 TraesCS4B01G083900 chr4D 93.939 231 11 2 7682 7910 55357089 55357318 6.220000e-91 346.0
13 TraesCS4B01G083900 chr4D 82.609 230 31 8 3049 3273 417623139 417622914 2.380000e-45 195.0
14 TraesCS4B01G083900 chr4A 95.550 2202 85 9 3272 5469 541684323 541682131 0.000000e+00 3511.0
15 TraesCS4B01G083900 chr4A 92.440 1984 87 16 5524 7498 541682125 541680196 0.000000e+00 2774.0
16 TraesCS4B01G083900 chr4A 94.231 676 23 11 7694 8366 541679992 541679330 0.000000e+00 1018.0
17 TraesCS4B01G083900 chr4A 89.815 756 41 11 1607 2337 541685848 541685104 0.000000e+00 937.0
18 TraesCS4B01G083900 chr4A 93.716 557 26 5 2495 3050 541685106 541684558 0.000000e+00 826.0
19 TraesCS4B01G083900 chr4A 95.238 462 20 2 966 1425 541686306 541685845 0.000000e+00 730.0
20 TraesCS4B01G083900 chr4A 82.456 570 59 23 149 709 742141000 742140463 2.130000e-125 460.0
21 TraesCS4B01G083900 chr4A 91.870 246 18 2 24 269 742141065 742140822 8.040000e-90 342.0
22 TraesCS4B01G083900 chr4A 91.282 195 10 5 2336 2527 362068075 362067885 8.330000e-65 259.0
23 TraesCS4B01G083900 chr4A 92.308 156 12 0 706 861 742140196 742140041 1.090000e-53 222.0
24 TraesCS4B01G083900 chr4A 89.333 150 14 2 2906 3053 541684629 541684480 3.990000e-43 187.0
25 TraesCS4B01G083900 chr4A 81.304 230 40 3 3049 3275 34265242 34265013 5.160000e-42 183.0
26 TraesCS4B01G083900 chr7D 93.287 715 36 5 149 856 477408341 477409050 0.000000e+00 1044.0
27 TraesCS4B01G083900 chr7D 90.385 52 3 2 1422 1472 523266987 523266937 5.420000e-07 67.6
28 TraesCS4B01G083900 chr5B 90.310 743 67 3 122 861 699389433 699388693 0.000000e+00 968.0
29 TraesCS4B01G083900 chr5B 85.135 222 29 4 3054 3273 262822996 262823215 3.040000e-54 224.0
30 TraesCS4B01G083900 chr7A 91.824 636 50 2 221 856 164427141 164426508 0.000000e+00 885.0
31 TraesCS4B01G083900 chr2A 90.909 627 40 4 122 745 12318952 12318340 0.000000e+00 826.0
32 TraesCS4B01G083900 chr2A 90.641 577 43 5 125 691 708450450 708449875 0.000000e+00 756.0
33 TraesCS4B01G083900 chr2A 87.719 228 26 2 3814 4039 127585765 127585992 1.790000e-66 265.0
34 TraesCS4B01G083900 chr2A 90.355 197 12 6 2336 2527 94112386 94112580 1.390000e-62 252.0
35 TraesCS4B01G083900 chr2A 92.174 115 9 0 743 857 12316922 12316808 6.720000e-36 163.0
36 TraesCS4B01G083900 chr6A 89.880 583 56 3 3 584 613041763 613041183 0.000000e+00 747.0
37 TraesCS4B01G083900 chr6A 88.660 97 4 3 5475 5565 1139618 1139523 2.470000e-20 111.0
38 TraesCS4B01G083900 chr2D 93.067 476 32 1 151 626 53583502 53583976 0.000000e+00 695.0
39 TraesCS4B01G083900 chr2D 82.432 222 35 4 3054 3272 589494147 589493927 3.080000e-44 191.0
40 TraesCS4B01G083900 chr7B 89.749 478 48 1 149 626 747328590 747329066 2.000000e-170 610.0
41 TraesCS4B01G083900 chr7B 84.411 263 31 5 3779 4031 385545791 385546053 5.010000e-62 250.0
42 TraesCS4B01G083900 chr7B 82.895 228 37 2 3048 3273 702171849 702171622 3.960000e-48 204.0
43 TraesCS4B01G083900 chr6B 88.494 478 37 6 149 626 140848053 140848512 5.670000e-156 562.0
44 TraesCS4B01G083900 chr6B 83.296 443 56 11 381 820 583268203 583267776 7.870000e-105 392.0
45 TraesCS4B01G083900 chr6B 96.450 169 4 1 2336 2502 519396846 519396678 2.300000e-70 278.0
46 TraesCS4B01G083900 chr6B 84.926 272 30 5 3779 4039 286623842 286624113 1.790000e-66 265.0
47 TraesCS4B01G083900 chr1D 89.614 337 27 6 1 332 267731524 267731191 1.000000e-113 422.0
48 TraesCS4B01G083900 chr1D 89.634 164 13 4 1 164 52679012 52679171 1.100000e-48 206.0
49 TraesCS4B01G083900 chr1A 87.546 273 25 7 1 269 14149103 14148836 2.930000e-79 307.0
50 TraesCS4B01G083900 chr1A 81.304 230 40 3 3047 3273 145919271 145919500 5.160000e-42 183.0
51 TraesCS4B01G083900 chr5A 87.454 271 23 8 3779 4039 547633625 547633356 1.360000e-77 302.0
52 TraesCS4B01G083900 chr3A 97.041 169 3 1 2332 2498 411083735 411083903 4.940000e-72 283.0
53 TraesCS4B01G083900 chr3A 95.349 172 5 2 2332 2500 70479041 70479212 3.850000e-68 270.0
54 TraesCS4B01G083900 chr3A 87.342 79 10 0 3598 3676 20722180 20722102 3.220000e-14 91.6
55 TraesCS4B01G083900 chr2B 95.402 174 5 2 2327 2497 342280952 342280779 2.980000e-69 274.0
56 TraesCS4B01G083900 chr2B 87.556 225 21 6 3817 4039 714520851 714521070 3.880000e-63 254.0
57 TraesCS4B01G083900 chr2B 92.391 92 5 2 5475 5565 111604627 111604717 6.810000e-26 130.0
58 TraesCS4B01G083900 chr2B 93.976 83 4 1 5483 5564 111604715 111604633 3.170000e-24 124.0
59 TraesCS4B01G083900 chr5D 85.609 271 26 8 3779 4039 285446561 285446828 1.070000e-68 272.0
60 TraesCS4B01G083900 chr5D 84.685 222 31 3 3054 3273 240849675 240849455 1.410000e-52 219.0
61 TraesCS4B01G083900 chr3B 89.671 213 18 3 3828 4039 89703999 89704208 1.380000e-67 268.0
62 TraesCS4B01G083900 chr3B 92.896 183 7 5 2336 2514 571752689 571752509 2.320000e-65 261.0
63 TraesCS4B01G083900 chr3B 93.103 87 4 2 5478 5562 825250022 825250108 8.820000e-25 126.0
64 TraesCS4B01G083900 chr3B 92.222 90 5 2 5475 5563 825250116 825250028 8.820000e-25 126.0
65 TraesCS4B01G083900 chr3B 91.463 82 5 1 5481 5562 669331068 669330989 2.470000e-20 111.0
66 TraesCS4B01G083900 chr3D 88.106 227 23 3 3814 4039 302279397 302279620 4.980000e-67 267.0
67 TraesCS4B01G083900 chr3D 91.954 87 6 1 5478 5563 558557514 558557428 4.100000e-23 121.0
68 TraesCS4B01G083900 chr1B 84.188 234 23 12 3049 3273 383801433 383801205 1.830000e-51 215.0
69 TraesCS4B01G083900 chr6D 82.969 229 33 6 3049 3273 91083809 91083583 1.420000e-47 202.0
70 TraesCS4B01G083900 chr6D 91.954 87 6 1 5484 5569 207268030 207267944 4.100000e-23 121.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G083900 chr4B 82414361 82422726 8365 False 15450.000000 15450 100.000000 1 8366 1 chr4B.!!$F1 8365
1 TraesCS4B01G083900 chr4D 55351050 55357829 6779 False 1307.428571 4091 93.168000 968 8366 7 chr4D.!!$F1 7398
2 TraesCS4B01G083900 chr4A 541679330 541686306 6976 True 1426.142857 3511 92.903286 966 8366 7 chr4A.!!$R3 7400
3 TraesCS4B01G083900 chr4A 742140041 742141065 1024 True 341.333333 460 88.878000 24 861 3 chr4A.!!$R4 837
4 TraesCS4B01G083900 chr7D 477408341 477409050 709 False 1044.000000 1044 93.287000 149 856 1 chr7D.!!$F1 707
5 TraesCS4B01G083900 chr5B 699388693 699389433 740 True 968.000000 968 90.310000 122 861 1 chr5B.!!$R1 739
6 TraesCS4B01G083900 chr7A 164426508 164427141 633 True 885.000000 885 91.824000 221 856 1 chr7A.!!$R1 635
7 TraesCS4B01G083900 chr2A 708449875 708450450 575 True 756.000000 756 90.641000 125 691 1 chr2A.!!$R1 566
8 TraesCS4B01G083900 chr2A 12316808 12318952 2144 True 494.500000 826 91.541500 122 857 2 chr2A.!!$R2 735
9 TraesCS4B01G083900 chr6A 613041183 613041763 580 True 747.000000 747 89.880000 3 584 1 chr6A.!!$R2 581

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
983 2690 0.389426 GTACTGTGCACGAATCCGGT 60.389 55.000 13.13 0.56 40.78 5.28 F
1792 3521 0.250467 GTGTCTCTTTGGGAGCAGCA 60.250 55.000 0.00 0.00 41.60 4.41 F
3058 4831 0.031721 GTTGGCGTATACTCCCTCCG 59.968 60.000 9.40 0.00 0.00 4.63 F
3768 5570 0.104120 TAATGGCATGACCTCGGACG 59.896 55.000 0.00 0.00 40.22 4.79 F
4091 5893 1.063266 GGGATGGCCAGGGAAATAACA 60.063 52.381 13.05 0.00 35.15 2.41 F
4997 6914 0.036732 AATTCAGCTCGAAGGGTGCA 59.963 50.000 0.00 0.00 36.95 4.57 F
4998 6915 0.254178 ATTCAGCTCGAAGGGTGCAT 59.746 50.000 0.00 0.00 36.95 3.96 F
4999 6916 0.674581 TTCAGCTCGAAGGGTGCATG 60.675 55.000 0.00 0.00 37.60 4.06 F
6838 8779 0.740737 GTCCATCGGCCAATCCTTTG 59.259 55.000 2.24 0.00 0.00 2.77 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1893 3622 0.609662 GCCCGGGTGTAGTAGTTTCA 59.390 55.000 24.63 0.0 0.00 2.69 R
3353 5152 0.030773 TGCGTAGGCATAAGAGAGCG 59.969 55.000 5.89 0.0 46.21 5.03 R
4030 5832 0.249657 GTGCGCCCAGATTAGAGGAG 60.250 60.000 4.18 0.0 0.00 3.69 R
4916 6829 1.002792 CGCATCATGGATTCACAGCAG 60.003 52.381 0.00 0.0 0.00 4.24 R
6054 7992 0.679505 ACGAAGCACAGAACCAGCTA 59.320 50.000 0.00 0.0 37.70 3.32 R
6820 8758 0.331278 ACAAAGGATTGGCCGATGGA 59.669 50.000 11.28 0.0 43.43 3.41 R
6824 8762 2.593026 AGAAAACAAAGGATTGGCCGA 58.407 42.857 0.00 0.0 43.43 5.54 R
6853 8794 3.569701 ACAGGTAAGGCAAACAATGAGTG 59.430 43.478 0.00 0.0 0.00 3.51 R
8120 10214 1.033574 TTTTTACCCAGGTTGGTGCG 58.966 50.000 0.00 0.0 39.53 5.34 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 3.376546 GCAACAAGACCCATTTTGCAAAA 59.623 39.130 25.76 25.76 41.77 2.44
78 79 6.881602 ACCCTTAGAAAAATTGCAAACAACAA 59.118 30.769 1.71 0.00 38.99 2.83
89 90 4.555709 ACAACAACTCCCGCCGCA 62.556 61.111 0.00 0.00 0.00 5.69
99 100 1.676006 CTCCCGCCGCATCTAATTTTT 59.324 47.619 0.00 0.00 0.00 1.94
121 122 5.496133 TTTGCAACAACATTTTTCATGGG 57.504 34.783 0.00 0.00 0.00 4.00
122 123 4.148128 TGCAACAACATTTTTCATGGGT 57.852 36.364 0.00 0.00 0.00 4.51
123 124 4.125703 TGCAACAACATTTTTCATGGGTC 58.874 39.130 0.00 0.00 0.00 4.46
124 125 4.141756 TGCAACAACATTTTTCATGGGTCT 60.142 37.500 0.00 0.00 0.00 3.85
126 127 5.988561 GCAACAACATTTTTCATGGGTCTAA 59.011 36.000 0.00 0.00 0.00 2.10
128 129 7.173047 GCAACAACATTTTTCATGGGTCTAATT 59.827 33.333 0.00 0.00 0.00 1.40
147 148 7.862372 GTCTAATTTTCTGCAACATCTTTCACA 59.138 33.333 0.00 0.00 0.00 3.58
152 153 1.601903 TGCAACATCTTTCACACGTCC 59.398 47.619 0.00 0.00 0.00 4.79
173 175 5.632347 GTCCAATTTTCTGCACATCTTTCAG 59.368 40.000 0.00 0.00 0.00 3.02
206 208 5.689383 TTCTGCAACAAGATCCTTGTTAC 57.311 39.130 20.43 16.67 40.30 2.50
207 209 4.713553 TCTGCAACAAGATCCTTGTTACA 58.286 39.130 20.43 19.52 40.30 2.41
208 210 5.129634 TCTGCAACAAGATCCTTGTTACAA 58.870 37.500 20.43 11.57 40.30 2.41
209 211 5.592282 TCTGCAACAAGATCCTTGTTACAAA 59.408 36.000 20.43 9.07 40.30 2.83
211 213 6.272318 TGCAACAAGATCCTTGTTACAAAAG 58.728 36.000 20.43 11.08 40.30 2.27
212 214 6.127479 TGCAACAAGATCCTTGTTACAAAAGT 60.127 34.615 20.43 0.00 40.30 2.66
213 215 6.756542 GCAACAAGATCCTTGTTACAAAAGTT 59.243 34.615 20.43 0.00 40.30 2.66
214 216 7.254084 GCAACAAGATCCTTGTTACAAAAGTTG 60.254 37.037 20.43 10.07 40.30 3.16
216 218 6.127479 ACAAGATCCTTGTTACAAAAGTTGCA 60.127 34.615 6.53 0.00 0.00 4.08
223 225 6.091986 CCTTGTTACAAAAGTTGCAACAACAT 59.908 34.615 30.11 14.17 46.43 2.71
424 440 2.490115 ACCGTTGTTGCAGAAAACTTGA 59.510 40.909 6.65 0.00 0.00 3.02
560 577 3.817647 GCTCCAGTTCTTGTTTCAGATGT 59.182 43.478 0.00 0.00 0.00 3.06
565 582 2.542020 TCTTGTTTCAGATGTGGCGA 57.458 45.000 0.00 0.00 0.00 5.54
569 586 0.804989 GTTTCAGATGTGGCGAAGGG 59.195 55.000 0.00 0.00 0.00 3.95
687 704 2.057922 GGGAATGAGCCAGAAGGGATA 58.942 52.381 0.00 0.00 40.01 2.59
699 716 6.562608 AGCCAGAAGGGATAATTAGGATGTAA 59.437 38.462 0.00 0.00 40.01 2.41
730 1017 1.859080 GAGAAAAAGTGACGCACGAGT 59.141 47.619 0.00 0.00 39.64 4.18
738 1025 2.282251 ACGCACGAGTGGAGGAGA 60.282 61.111 5.32 0.00 0.00 3.71
745 2452 3.735514 GCACGAGTGGAGGAGAAGATAAC 60.736 52.174 5.32 0.00 0.00 1.89
768 2475 4.160626 CGTTGAGAAAGGGAAGGAGATAGT 59.839 45.833 0.00 0.00 0.00 2.12
906 2613 6.825944 TTTTTAAAAGGCTGGCAAGTTTTT 57.174 29.167 3.38 9.46 0.00 1.94
927 2634 3.614192 TTTTTGAGGGGGAGGGGG 58.386 61.111 0.00 0.00 0.00 5.40
928 2635 1.389682 TTTTTGAGGGGGAGGGGGT 60.390 57.895 0.00 0.00 0.00 4.95
929 2636 1.735455 TTTTTGAGGGGGAGGGGGTG 61.735 60.000 0.00 0.00 0.00 4.61
930 2637 4.693915 TTGAGGGGGAGGGGGTGG 62.694 72.222 0.00 0.00 0.00 4.61
937 2644 3.992641 GGAGGGGGTGGGGGTTTG 61.993 72.222 0.00 0.00 0.00 2.93
938 2645 3.992641 GAGGGGGTGGGGGTTTGG 61.993 72.222 0.00 0.00 0.00 3.28
941 2648 3.852421 GGGGTGGGGGTTTGGGTT 61.852 66.667 0.00 0.00 0.00 4.11
942 2649 2.525629 GGGTGGGGGTTTGGGTTG 60.526 66.667 0.00 0.00 0.00 3.77
943 2650 2.609920 GGTGGGGGTTTGGGTTGA 59.390 61.111 0.00 0.00 0.00 3.18
944 2651 1.157513 GGTGGGGGTTTGGGTTGAT 59.842 57.895 0.00 0.00 0.00 2.57
945 2652 0.472925 GGTGGGGGTTTGGGTTGATT 60.473 55.000 0.00 0.00 0.00 2.57
946 2653 1.429930 GTGGGGGTTTGGGTTGATTT 58.570 50.000 0.00 0.00 0.00 2.17
947 2654 1.771854 GTGGGGGTTTGGGTTGATTTT 59.228 47.619 0.00 0.00 0.00 1.82
948 2655 2.973406 GTGGGGGTTTGGGTTGATTTTA 59.027 45.455 0.00 0.00 0.00 1.52
949 2656 3.585289 GTGGGGGTTTGGGTTGATTTTAT 59.415 43.478 0.00 0.00 0.00 1.40
950 2657 4.042311 GTGGGGGTTTGGGTTGATTTTATT 59.958 41.667 0.00 0.00 0.00 1.40
951 2658 4.665483 TGGGGGTTTGGGTTGATTTTATTT 59.335 37.500 0.00 0.00 0.00 1.40
952 2659 5.134509 TGGGGGTTTGGGTTGATTTTATTTT 59.865 36.000 0.00 0.00 0.00 1.82
953 2660 6.331837 TGGGGGTTTGGGTTGATTTTATTTTA 59.668 34.615 0.00 0.00 0.00 1.52
954 2661 6.655848 GGGGGTTTGGGTTGATTTTATTTTAC 59.344 38.462 0.00 0.00 0.00 2.01
955 2662 7.225011 GGGGTTTGGGTTGATTTTATTTTACA 58.775 34.615 0.00 0.00 0.00 2.41
956 2663 7.720074 GGGGTTTGGGTTGATTTTATTTTACAA 59.280 33.333 0.00 0.00 0.00 2.41
957 2664 9.290988 GGGTTTGGGTTGATTTTATTTTACAAT 57.709 29.630 0.00 0.00 0.00 2.71
962 2669 9.936759 TGGGTTGATTTTATTTTACAATCCTTC 57.063 29.630 0.00 0.00 40.88 3.46
963 2670 9.936759 GGGTTGATTTTATTTTACAATCCTTCA 57.063 29.630 0.00 0.00 38.31 3.02
983 2690 0.389426 GTACTGTGCACGAATCCGGT 60.389 55.000 13.13 0.56 40.78 5.28
986 2693 1.354337 CTGTGCACGAATCCGGTCAG 61.354 60.000 13.13 0.00 40.78 3.51
991 2698 2.007049 GCACGAATCCGGTCAGTTCAT 61.007 52.381 0.00 0.00 40.78 2.57
996 2703 3.334691 GAATCCGGTCAGTTCATCACAA 58.665 45.455 0.00 0.00 0.00 3.33
1003 2710 3.120060 GGTCAGTTCATCACAACAGATGC 60.120 47.826 0.00 0.00 43.94 3.91
1152 2859 1.589399 CCCTCCCTCTGTCCCTCTCT 61.589 65.000 0.00 0.00 0.00 3.10
1286 2993 3.634202 TCCTGCCGAGGAGAATGG 58.366 61.111 0.00 0.00 44.13 3.16
1354 3061 0.529119 CGGCGAGTTAAAGCGGGTAT 60.529 55.000 0.00 0.00 0.00 2.73
1362 3069 5.416271 AGTTAAAGCGGGTATCTTTCTCA 57.584 39.130 0.00 0.00 35.58 3.27
1382 3089 5.936956 TCTCAGATTTGCTTTCTTCCTCTTC 59.063 40.000 0.00 0.00 0.00 2.87
1454 3163 2.263077 AGCGTTCTAAGCAATGTCTCG 58.737 47.619 0.00 0.00 37.01 4.04
1469 3178 6.676456 GCAATGTCTCGCTAAATGAAATCAGT 60.676 38.462 0.00 0.00 0.00 3.41
1470 3179 5.784750 TGTCTCGCTAAATGAAATCAGTG 57.215 39.130 0.00 0.00 0.00 3.66
1471 3180 4.093408 TGTCTCGCTAAATGAAATCAGTGC 59.907 41.667 0.00 0.00 0.00 4.40
1472 3181 3.306973 TCTCGCTAAATGAAATCAGTGCG 59.693 43.478 8.64 8.64 42.89 5.34
1473 3182 3.258228 TCGCTAAATGAAATCAGTGCGA 58.742 40.909 12.25 12.25 46.82 5.10
1474 3183 3.871006 TCGCTAAATGAAATCAGTGCGAT 59.129 39.130 12.25 0.00 44.74 4.58
1475 3184 5.047188 TCGCTAAATGAAATCAGTGCGATA 58.953 37.500 12.25 0.00 44.74 2.92
1477 3186 6.866248 TCGCTAAATGAAATCAGTGCGATATA 59.134 34.615 12.25 0.00 44.74 0.86
1478 3187 7.062255 TCGCTAAATGAAATCAGTGCGATATAG 59.938 37.037 12.25 0.00 44.74 1.31
1479 3188 6.958193 GCTAAATGAAATCAGTGCGATATAGC 59.042 38.462 0.16 0.16 32.51 2.97
1504 3230 7.550712 CAGATTTTAAGGGCTGCTCTATTTTT 58.449 34.615 0.60 0.00 0.00 1.94
1532 3258 8.680903 CATAGCACACTATTTTTCTTCCTTGAT 58.319 33.333 0.00 0.00 36.96 2.57
1535 3261 8.424133 AGCACACTATTTTTCTTCCTTGATTTT 58.576 29.630 0.00 0.00 0.00 1.82
1560 3286 3.554524 CTGAATAGGTGCACGTTTGTTG 58.445 45.455 18.35 2.59 0.00 3.33
1581 3307 1.004862 TCAGACGATGAGACTGGAGGT 59.995 52.381 0.00 0.00 41.75 3.85
1591 3317 5.843019 TGAGACTGGAGGTAAAGGAAAAT 57.157 39.130 0.00 0.00 0.00 1.82
1596 3322 9.244292 GAGACTGGAGGTAAAGGAAAATATTTT 57.756 33.333 13.24 13.24 0.00 1.82
1681 3407 9.191479 TCAATTTCGGGGTATAATTGTATTTGT 57.809 29.630 0.00 0.00 39.25 2.83
1745 3473 6.653740 TGATCATAAAGGATAAGCATGAGCAG 59.346 38.462 0.00 0.00 45.49 4.24
1786 3515 4.916041 ATTCATCAGTGTCTCTTTGGGA 57.084 40.909 0.00 0.00 0.00 4.37
1792 3521 0.250467 GTGTCTCTTTGGGAGCAGCA 60.250 55.000 0.00 0.00 41.60 4.41
1800 3529 2.203126 GGGAGCAGCATTCCTCGG 60.203 66.667 0.00 0.00 35.01 4.63
1817 3546 6.534475 TCCTCGGCAGAGTACTAAATTTAA 57.466 37.500 13.02 0.00 42.86 1.52
1857 3586 5.762045 CGGAATTCCCTATTTGCTGTAATG 58.238 41.667 19.01 0.00 0.00 1.90
1872 3601 4.769688 CTGTAATGTGGATACCTTGCAGA 58.230 43.478 7.41 0.00 42.96 4.26
1889 3618 2.164422 GCAGAGGAAACTACAATTGGCC 59.836 50.000 10.83 0.00 44.43 5.36
1893 3622 4.478686 AGAGGAAACTACAATTGGCCCTAT 59.521 41.667 10.83 1.53 44.43 2.57
1895 3624 4.229582 AGGAAACTACAATTGGCCCTATGA 59.770 41.667 10.83 0.00 40.61 2.15
1962 3691 3.687212 TCCGTAAACAATGCATGTACAGG 59.313 43.478 0.00 2.43 42.99 4.00
2039 3802 5.009210 TGGGTGTACAAATAGTTGCTTTGTC 59.991 40.000 2.17 0.00 43.72 3.18
2292 4059 9.581289 TGGTAATTCCAGAATCTTTTTCTTGTA 57.419 29.630 0.00 0.00 41.93 2.41
2347 4114 2.019807 TTCCTTGTACTCCCTCCGTT 57.980 50.000 0.00 0.00 0.00 4.44
2349 4116 0.535797 CCTTGTACTCCCTCCGTTCC 59.464 60.000 0.00 0.00 0.00 3.62
2350 4117 1.558233 CTTGTACTCCCTCCGTTCCT 58.442 55.000 0.00 0.00 0.00 3.36
2354 4121 3.716431 TGTACTCCCTCCGTTCCTAAAT 58.284 45.455 0.00 0.00 0.00 1.40
2355 4122 4.870636 TGTACTCCCTCCGTTCCTAAATA 58.129 43.478 0.00 0.00 0.00 1.40
2356 4123 5.461327 TGTACTCCCTCCGTTCCTAAATAT 58.539 41.667 0.00 0.00 0.00 1.28
2362 4129 5.427481 TCCCTCCGTTCCTAAATATTTGTCT 59.573 40.000 11.05 0.00 0.00 3.41
2363 4130 6.069847 TCCCTCCGTTCCTAAATATTTGTCTT 60.070 38.462 11.05 0.00 0.00 3.01
2364 4131 6.602009 CCCTCCGTTCCTAAATATTTGTCTTT 59.398 38.462 11.05 0.00 0.00 2.52
2365 4132 7.122204 CCCTCCGTTCCTAAATATTTGTCTTTT 59.878 37.037 11.05 0.00 0.00 2.27
2366 4133 8.520351 CCTCCGTTCCTAAATATTTGTCTTTTT 58.480 33.333 11.05 0.00 0.00 1.94
2369 4136 9.783256 CCGTTCCTAAATATTTGTCTTTTTAGG 57.217 33.333 11.05 12.11 46.30 2.69
2382 4149 9.541143 TTTGTCTTTTTAGGATTTCAAATGGAC 57.459 29.630 0.00 0.00 0.00 4.02
2384 4151 9.581289 TGTCTTTTTAGGATTTCAAATGGACTA 57.419 29.630 0.00 0.00 0.00 2.59
2401 4168 5.633117 TGGACTACCACATACGGATGTATA 58.367 41.667 14.23 8.27 44.82 1.47
2405 4172 7.772292 GGACTACCACATACGGATGTATATAGA 59.228 40.741 22.62 5.04 44.82 1.98
2406 4173 8.503458 ACTACCACATACGGATGTATATAGAC 57.497 38.462 22.62 0.00 44.82 2.59
2407 4174 8.105197 ACTACCACATACGGATGTATATAGACA 58.895 37.037 22.62 2.07 44.82 3.41
2408 4175 7.154435 ACCACATACGGATGTATATAGACAC 57.846 40.000 14.23 0.00 44.82 3.67
2410 4177 7.396339 ACCACATACGGATGTATATAGACACAT 59.604 37.037 14.23 0.00 44.82 3.21
2411 4178 8.251026 CCACATACGGATGTATATAGACACATT 58.749 37.037 14.23 0.00 44.82 2.71
2435 4203 9.846248 ATTTTAGTGTAGATTCACTCATTTTGC 57.154 29.630 2.59 0.00 45.79 3.68
2436 4204 8.621532 TTTAGTGTAGATTCACTCATTTTGCT 57.378 30.769 2.59 0.00 45.79 3.91
2437 4205 6.734104 AGTGTAGATTCACTCATTTTGCTC 57.266 37.500 0.00 0.00 44.07 4.26
2438 4206 5.645497 AGTGTAGATTCACTCATTTTGCTCC 59.355 40.000 0.00 0.00 44.07 4.70
2439 4207 4.631377 TGTAGATTCACTCATTTTGCTCCG 59.369 41.667 0.00 0.00 0.00 4.63
2440 4208 3.679389 AGATTCACTCATTTTGCTCCGT 58.321 40.909 0.00 0.00 0.00 4.69
2442 4210 5.431765 AGATTCACTCATTTTGCTCCGTAT 58.568 37.500 0.00 0.00 0.00 3.06
2443 4211 4.944962 TTCACTCATTTTGCTCCGTATG 57.055 40.909 0.00 0.00 0.00 2.39
2445 4213 5.079689 TCACTCATTTTGCTCCGTATGTA 57.920 39.130 0.00 0.00 0.00 2.29
2446 4214 5.109210 TCACTCATTTTGCTCCGTATGTAG 58.891 41.667 0.00 0.00 0.00 2.74
2447 4215 4.870426 CACTCATTTTGCTCCGTATGTAGT 59.130 41.667 0.00 0.00 0.00 2.73
2448 4216 5.005779 CACTCATTTTGCTCCGTATGTAGTC 59.994 44.000 0.00 0.00 0.00 2.59
2449 4217 5.079689 TCATTTTGCTCCGTATGTAGTCA 57.920 39.130 0.00 0.00 0.00 3.41
2450 4218 4.868171 TCATTTTGCTCCGTATGTAGTCAC 59.132 41.667 0.00 0.00 0.00 3.67
2451 4219 4.530710 TTTTGCTCCGTATGTAGTCACT 57.469 40.909 0.00 0.00 0.00 3.41
2452 4220 4.530710 TTTGCTCCGTATGTAGTCACTT 57.469 40.909 0.00 0.00 0.00 3.16
2453 4221 3.503827 TGCTCCGTATGTAGTCACTTG 57.496 47.619 0.00 0.00 0.00 3.16
2454 4222 2.823747 TGCTCCGTATGTAGTCACTTGT 59.176 45.455 0.00 0.00 0.00 3.16
2455 4223 3.257375 TGCTCCGTATGTAGTCACTTGTT 59.743 43.478 0.00 0.00 0.00 2.83
2456 4224 4.460034 TGCTCCGTATGTAGTCACTTGTTA 59.540 41.667 0.00 0.00 0.00 2.41
2457 4225 5.047872 TGCTCCGTATGTAGTCACTTGTTAA 60.048 40.000 0.00 0.00 0.00 2.01
2458 4226 5.865552 GCTCCGTATGTAGTCACTTGTTAAA 59.134 40.000 0.00 0.00 0.00 1.52
2459 4227 6.366877 GCTCCGTATGTAGTCACTTGTTAAAA 59.633 38.462 0.00 0.00 0.00 1.52
2460 4228 7.064253 GCTCCGTATGTAGTCACTTGTTAAAAT 59.936 37.037 0.00 0.00 0.00 1.82
2461 4229 8.470040 TCCGTATGTAGTCACTTGTTAAAATC 57.530 34.615 0.00 0.00 0.00 2.17
2462 4230 8.308931 TCCGTATGTAGTCACTTGTTAAAATCT 58.691 33.333 0.00 0.00 0.00 2.40
2463 4231 8.592998 CCGTATGTAGTCACTTGTTAAAATCTC 58.407 37.037 0.00 0.00 0.00 2.75
2464 4232 9.355215 CGTATGTAGTCACTTGTTAAAATCTCT 57.645 33.333 0.00 0.00 0.00 3.10
2492 4260 5.566469 AGACAAATATTTTGGAACGGAGGA 58.434 37.500 0.00 0.00 0.00 3.71
2641 4411 4.202245 ACGGCTCAGTATAAAGCTGAAA 57.798 40.909 15.25 0.00 45.82 2.69
2653 4423 6.840780 ATAAAGCTGAAAGGCACTAATTGT 57.159 33.333 0.00 0.00 38.49 2.71
2654 4424 4.773323 AAGCTGAAAGGCACTAATTGTC 57.227 40.909 0.00 0.00 38.49 3.18
2655 4425 4.026356 AGCTGAAAGGCACTAATTGTCT 57.974 40.909 0.00 0.00 44.40 3.41
2656 4426 5.165961 AGCTGAAAGGCACTAATTGTCTA 57.834 39.130 0.00 0.00 40.23 2.59
2657 4427 5.560724 AGCTGAAAGGCACTAATTGTCTAA 58.439 37.500 0.00 0.00 40.23 2.10
2658 4428 6.183347 AGCTGAAAGGCACTAATTGTCTAAT 58.817 36.000 0.00 0.00 40.23 1.73
2659 4429 6.660949 AGCTGAAAGGCACTAATTGTCTAATT 59.339 34.615 0.00 0.00 40.23 1.40
2660 4430 6.749118 GCTGAAAGGCACTAATTGTCTAATTG 59.251 38.462 0.00 0.00 40.23 2.32
2677 4447 9.869757 TGTCTAATTGATGTATTTCGAGAAAGA 57.130 29.630 4.54 0.00 33.32 2.52
2691 4461 5.972935 TCGAGAAAGATTGTAACCTGCATA 58.027 37.500 0.00 0.00 0.00 3.14
2832 4602 8.040727 AGCTGGTTTTAAATTTTTGAAGACTGT 58.959 29.630 0.00 0.00 0.00 3.55
2877 4647 5.279456 GGTGGAAAACATCACAGCCTTAATT 60.279 40.000 0.00 0.00 35.74 1.40
2965 4737 7.341805 AGCTCATCATATTGTTCTGTTTAGGT 58.658 34.615 0.00 0.00 0.00 3.08
2972 4744 7.880713 TCATATTGTTCTGTTTAGGTGTTAGCA 59.119 33.333 0.00 0.00 0.00 3.49
2973 4745 5.744666 TTGTTCTGTTTAGGTGTTAGCAC 57.255 39.130 0.27 0.27 44.53 4.40
2976 4748 6.526526 TGTTCTGTTTAGGTGTTAGCACATA 58.473 36.000 12.05 6.00 46.95 2.29
2982 4754 9.769093 CTGTTTAGGTGTTAGCACATATTTTAC 57.231 33.333 12.05 5.96 46.95 2.01
3022 4795 8.651588 CAACAATTCTAGTCTGTAACTCATCAC 58.348 37.037 0.00 0.00 39.55 3.06
3042 4815 6.130298 TCACATTGTTCTGTTTAGGTGTTG 57.870 37.500 0.00 0.00 0.00 3.33
3050 4823 4.497300 TCTGTTTAGGTGTTGGCGTATAC 58.503 43.478 0.00 0.00 0.00 1.47
3052 4825 4.497300 TGTTTAGGTGTTGGCGTATACTC 58.503 43.478 0.56 0.00 0.00 2.59
3053 4826 3.806625 TTAGGTGTTGGCGTATACTCC 57.193 47.619 4.86 4.86 0.00 3.85
3054 4827 0.828677 AGGTGTTGGCGTATACTCCC 59.171 55.000 9.40 6.03 0.00 4.30
3055 4828 0.828677 GGTGTTGGCGTATACTCCCT 59.171 55.000 9.40 0.00 0.00 4.20
3056 4829 1.202498 GGTGTTGGCGTATACTCCCTC 60.202 57.143 9.40 3.45 0.00 4.30
3057 4830 1.117150 TGTTGGCGTATACTCCCTCC 58.883 55.000 9.40 0.00 0.00 4.30
3058 4831 0.031721 GTTGGCGTATACTCCCTCCG 59.968 60.000 9.40 0.00 0.00 4.63
3059 4832 0.396139 TTGGCGTATACTCCCTCCGT 60.396 55.000 9.40 0.00 0.00 4.69
3060 4833 0.820891 TGGCGTATACTCCCTCCGTC 60.821 60.000 9.40 0.00 0.00 4.79
3061 4834 0.536915 GGCGTATACTCCCTCCGTCT 60.537 60.000 0.00 0.00 0.00 4.18
3062 4835 0.592148 GCGTATACTCCCTCCGTCTG 59.408 60.000 0.56 0.00 0.00 3.51
3063 4836 1.236628 CGTATACTCCCTCCGTCTGG 58.763 60.000 0.56 0.00 0.00 3.86
3064 4837 1.618487 GTATACTCCCTCCGTCTGGG 58.382 60.000 0.00 0.00 45.90 4.45
3065 4838 1.133544 GTATACTCCCTCCGTCTGGGT 60.134 57.143 0.00 0.00 44.84 4.51
3067 4840 0.115745 TACTCCCTCCGTCTGGGTTT 59.884 55.000 0.00 0.00 44.84 3.27
3068 4841 0.115745 ACTCCCTCCGTCTGGGTTTA 59.884 55.000 0.00 0.00 44.84 2.01
3069 4842 1.273666 ACTCCCTCCGTCTGGGTTTAT 60.274 52.381 0.00 0.00 44.84 1.40
3070 4843 1.838077 CTCCCTCCGTCTGGGTTTATT 59.162 52.381 0.00 0.00 44.84 1.40
3072 4845 3.036091 TCCCTCCGTCTGGGTTTATTAG 58.964 50.000 0.00 0.00 44.84 1.73
3073 4846 3.036091 CCCTCCGTCTGGGTTTATTAGA 58.964 50.000 0.00 0.00 39.82 2.10
3074 4847 3.181468 CCCTCCGTCTGGGTTTATTAGAC 60.181 52.174 0.00 0.00 39.82 2.59
3075 4848 3.181468 CCTCCGTCTGGGTTTATTAGACC 60.181 52.174 0.00 0.00 38.02 3.85
3076 4849 3.443052 TCCGTCTGGGTTTATTAGACCA 58.557 45.455 5.81 0.00 38.02 4.02
3077 4850 3.196254 TCCGTCTGGGTTTATTAGACCAC 59.804 47.826 5.81 0.00 38.02 4.16
3078 4851 3.528532 CGTCTGGGTTTATTAGACCACC 58.471 50.000 5.81 0.00 38.02 4.61
3079 4852 3.197116 CGTCTGGGTTTATTAGACCACCT 59.803 47.826 5.81 0.00 38.02 4.00
3080 4853 4.323257 CGTCTGGGTTTATTAGACCACCTT 60.323 45.833 5.81 0.00 38.02 3.50
3081 4854 4.941873 GTCTGGGTTTATTAGACCACCTTG 59.058 45.833 5.81 0.00 38.98 3.61
3083 4856 5.786457 TCTGGGTTTATTAGACCACCTTGTA 59.214 40.000 5.81 0.00 38.98 2.41
3085 4858 7.034967 TGGGTTTATTAGACCACCTTGTATT 57.965 36.000 5.81 0.00 38.98 1.89
3087 4860 7.951245 TGGGTTTATTAGACCACCTTGTATTTT 59.049 33.333 5.81 0.00 38.98 1.82
3088 4861 8.809066 GGGTTTATTAGACCACCTTGTATTTTT 58.191 33.333 5.81 0.00 38.98 1.94
3089 4862 9.634163 GGTTTATTAGACCACCTTGTATTTTTG 57.366 33.333 0.00 0.00 37.14 2.44
3092 4865 9.575868 TTATTAGACCACCTTGTATTTTTGTCA 57.424 29.630 0.00 0.00 0.00 3.58
3093 4866 7.883391 TTAGACCACCTTGTATTTTTGTCAA 57.117 32.000 0.00 0.00 0.00 3.18
3094 4867 6.783708 AGACCACCTTGTATTTTTGTCAAA 57.216 33.333 0.00 0.00 0.00 2.69
3095 4868 6.569780 AGACCACCTTGTATTTTTGTCAAAC 58.430 36.000 0.00 0.00 0.00 2.93
3097 4870 6.941857 ACCACCTTGTATTTTTGTCAAACTT 58.058 32.000 0.00 0.00 0.00 2.66
3099 4872 7.333174 ACCACCTTGTATTTTTGTCAAACTTTG 59.667 33.333 0.00 0.00 0.00 2.77
3100 4873 7.547370 CCACCTTGTATTTTTGTCAAACTTTGA 59.453 33.333 0.00 0.00 37.33 2.69
3113 4886 5.841810 TCAAACTTTGACCATCCATGAAAC 58.158 37.500 0.00 0.00 34.08 2.78
3114 4887 5.598005 TCAAACTTTGACCATCCATGAAACT 59.402 36.000 0.00 0.00 34.08 2.66
3115 4888 6.775142 TCAAACTTTGACCATCCATGAAACTA 59.225 34.615 0.00 0.00 34.08 2.24
3116 4889 7.286546 TCAAACTTTGACCATCCATGAAACTAA 59.713 33.333 0.00 0.00 34.08 2.24
3117 4890 6.575162 ACTTTGACCATCCATGAAACTAAC 57.425 37.500 0.00 0.00 0.00 2.34
3118 4891 6.068010 ACTTTGACCATCCATGAAACTAACA 58.932 36.000 0.00 0.00 0.00 2.41
3119 4892 6.549364 ACTTTGACCATCCATGAAACTAACAA 59.451 34.615 0.00 0.00 0.00 2.83
3120 4893 6.968263 TTGACCATCCATGAAACTAACAAA 57.032 33.333 0.00 0.00 0.00 2.83
3121 4894 6.968263 TGACCATCCATGAAACTAACAAAA 57.032 33.333 0.00 0.00 0.00 2.44
3122 4895 7.537596 TGACCATCCATGAAACTAACAAAAT 57.462 32.000 0.00 0.00 0.00 1.82
3123 4896 8.642935 TGACCATCCATGAAACTAACAAAATA 57.357 30.769 0.00 0.00 0.00 1.40
3124 4897 8.519526 TGACCATCCATGAAACTAACAAAATAC 58.480 33.333 0.00 0.00 0.00 1.89
3125 4898 8.415950 ACCATCCATGAAACTAACAAAATACA 57.584 30.769 0.00 0.00 0.00 2.29
3126 4899 8.865090 ACCATCCATGAAACTAACAAAATACAA 58.135 29.630 0.00 0.00 0.00 2.41
3127 4900 9.703892 CCATCCATGAAACTAACAAAATACAAA 57.296 29.630 0.00 0.00 0.00 2.83
3169 4942 9.874205 ACATATTGTTGGATTTGTATTTGAAGG 57.126 29.630 0.00 0.00 0.00 3.46
3172 4945 6.588719 TGTTGGATTTGTATTTGAAGGAGG 57.411 37.500 0.00 0.00 0.00 4.30
3173 4946 6.074648 TGTTGGATTTGTATTTGAAGGAGGT 58.925 36.000 0.00 0.00 0.00 3.85
3174 4947 6.553100 TGTTGGATTTGTATTTGAAGGAGGTT 59.447 34.615 0.00 0.00 0.00 3.50
3175 4948 7.070571 TGTTGGATTTGTATTTGAAGGAGGTTT 59.929 33.333 0.00 0.00 0.00 3.27
3177 4950 7.666623 TGGATTTGTATTTGAAGGAGGTTTTC 58.333 34.615 0.00 0.00 0.00 2.29
3243 5016 9.923143 AGTTAAATTTATGGTCAAACTTTAGCC 57.077 29.630 0.00 0.00 0.00 3.93
3245 5018 6.926630 AATTTATGGTCAAACTTTAGCCCA 57.073 33.333 0.00 0.00 0.00 5.36
3247 5020 6.732896 TTTATGGTCAAACTTTAGCCCAAA 57.267 33.333 0.00 0.00 0.00 3.28
3248 5021 6.732896 TTATGGTCAAACTTTAGCCCAAAA 57.267 33.333 0.00 0.00 0.00 2.44
3249 5022 5.823861 ATGGTCAAACTTTAGCCCAAAAT 57.176 34.783 0.00 0.00 0.00 1.82
3250 5023 4.954875 TGGTCAAACTTTAGCCCAAAATG 58.045 39.130 0.00 0.00 0.00 2.32
3253 5026 6.052360 GGTCAAACTTTAGCCCAAAATGAAA 58.948 36.000 0.00 0.00 0.00 2.69
3254 5027 6.202762 GGTCAAACTTTAGCCCAAAATGAAAG 59.797 38.462 0.00 0.00 34.11 2.62
3255 5028 6.202762 GTCAAACTTTAGCCCAAAATGAAAGG 59.797 38.462 0.00 0.00 32.56 3.11
3257 5030 3.582647 ACTTTAGCCCAAAATGAAAGGGG 59.417 43.478 0.00 0.00 43.04 4.79
3258 5031 2.246091 TAGCCCAAAATGAAAGGGGG 57.754 50.000 0.00 0.00 43.04 5.40
3260 5033 1.990424 CCCAAAATGAAAGGGGGCC 59.010 57.895 0.00 0.00 38.98 5.80
3261 5034 0.547471 CCCAAAATGAAAGGGGGCCT 60.547 55.000 0.84 0.00 38.98 5.19
3262 5035 1.273552 CCCAAAATGAAAGGGGGCCTA 60.274 52.381 0.84 0.00 38.98 3.93
3263 5036 2.545810 CCAAAATGAAAGGGGGCCTAA 58.454 47.619 0.84 0.00 31.13 2.69
3264 5037 3.114606 CCAAAATGAAAGGGGGCCTAAT 58.885 45.455 0.84 0.00 31.13 1.73
3267 5040 5.190726 CCAAAATGAAAGGGGGCCTAATAAA 59.809 40.000 0.84 0.00 31.13 1.40
3268 5041 5.950544 AAATGAAAGGGGGCCTAATAAAC 57.049 39.130 0.84 0.00 31.13 2.01
3270 5043 2.023791 TGAAAGGGGGCCTAATAAACCC 60.024 50.000 0.84 2.05 43.44 4.11
3365 5164 2.126467 CTTCTGCTCGCTCTCTTATGC 58.874 52.381 0.00 0.00 0.00 3.14
3622 5424 9.573166 TTTGTTGAAGTATATATGGATTCCCTG 57.427 33.333 0.00 0.00 0.00 4.45
3640 5442 2.568956 CCTGACCTTCTCCATCAGTTCA 59.431 50.000 0.00 0.00 38.56 3.18
3641 5443 3.008375 CCTGACCTTCTCCATCAGTTCAA 59.992 47.826 0.00 0.00 38.56 2.69
3764 5566 2.260844 ATGGTAATGGCATGACCTCG 57.739 50.000 29.94 0.00 40.22 4.63
3768 5570 0.104120 TAATGGCATGACCTCGGACG 59.896 55.000 0.00 0.00 40.22 4.79
3769 5571 3.740128 ATGGCATGACCTCGGACGC 62.740 63.158 0.00 0.00 40.22 5.19
3831 5633 7.299896 TCAGATATCAAATCATGGGGTCAATT 58.700 34.615 5.32 0.00 0.00 2.32
3847 5649 2.548057 TCAATTCACGCAACCTGAAGAC 59.452 45.455 0.00 0.00 31.22 3.01
3855 5657 1.531578 GCAACCTGAAGACGAGGAAAC 59.468 52.381 0.00 0.00 34.37 2.78
3925 5727 5.357878 GGCACAATAATCCTTGATCTCACAA 59.642 40.000 0.00 0.00 0.00 3.33
3944 5746 3.058016 ACAAGAACCTTCACGCAATCATG 60.058 43.478 0.00 0.00 0.00 3.07
3946 5748 3.005554 AGAACCTTCACGCAATCATGAG 58.994 45.455 0.09 0.00 0.00 2.90
3951 5753 4.154195 ACCTTCACGCAATCATGAGTTTAC 59.846 41.667 0.09 0.00 37.49 2.01
3962 5764 8.408601 GCAATCATGAGTTTACTTGATAACCAT 58.591 33.333 0.09 0.00 34.92 3.55
3969 5771 2.401583 ACTTGATAACCATCAGCGCA 57.598 45.000 11.47 0.00 42.11 6.09
4030 5832 9.834628 TGTTCAAACTCAATATAAAATTCGACC 57.165 29.630 0.00 0.00 0.00 4.79
4044 5846 2.366640 TCGACCTCCTCTAATCTGGG 57.633 55.000 0.00 0.00 0.00 4.45
4091 5893 1.063266 GGGATGGCCAGGGAAATAACA 60.063 52.381 13.05 0.00 35.15 2.41
4092 5894 2.031870 GGATGGCCAGGGAAATAACAC 58.968 52.381 13.05 0.00 0.00 3.32
4094 5896 2.685106 TGGCCAGGGAAATAACACAA 57.315 45.000 0.00 0.00 0.00 3.33
4116 5918 3.266772 AGCATGGACCAGAATTCCAACTA 59.733 43.478 0.65 0.00 46.37 2.24
4144 5946 3.446161 CGACCCAGACTAGATACAAACCA 59.554 47.826 0.00 0.00 0.00 3.67
4148 5950 4.514401 CCAGACTAGATACAAACCAACCC 58.486 47.826 0.00 0.00 0.00 4.11
4300 6102 2.347731 CCTCCTCGGCTAAACTGAAAC 58.652 52.381 0.00 0.00 31.65 2.78
4301 6103 2.289444 CCTCCTCGGCTAAACTGAAACA 60.289 50.000 0.00 0.00 31.65 2.83
4303 6105 4.003648 CTCCTCGGCTAAACTGAAACAAT 58.996 43.478 0.00 0.00 31.65 2.71
4305 6107 4.454504 TCCTCGGCTAAACTGAAACAATTC 59.545 41.667 0.00 0.00 31.65 2.17
4306 6108 4.455877 CCTCGGCTAAACTGAAACAATTCT 59.544 41.667 0.00 0.00 36.48 2.40
4313 6116 6.198966 GCTAAACTGAAACAATTCTTGTGGTG 59.801 38.462 0.00 0.00 44.59 4.17
4330 6133 3.037549 TGGTGTTCTGAAATTGGGCTTT 58.962 40.909 0.00 0.00 0.00 3.51
4333 6136 4.556233 GTGTTCTGAAATTGGGCTTTACC 58.444 43.478 0.00 0.00 37.93 2.85
4447 6251 6.101650 TGACTATGATACATAACTGGGCAG 57.898 41.667 0.00 0.00 0.00 4.85
4450 6254 6.940739 ACTATGATACATAACTGGGCAGATC 58.059 40.000 0.00 0.00 0.00 2.75
4773 6577 3.553105 GCATAGCTTATTTTGGCACTTGC 59.447 43.478 0.00 0.00 41.14 4.01
4837 6749 7.880160 TCTAGGCCGTAGTTAACAGTAATAA 57.120 36.000 8.61 0.00 0.00 1.40
4916 6829 0.322008 CTTTCTGGACCCTGACAGCC 60.322 60.000 0.00 0.00 34.76 4.85
4946 6859 1.402613 TCCATGATGCGCTGATTGTTG 59.597 47.619 9.73 0.00 0.00 3.33
4956 6869 2.481104 CGCTGATTGTTGTTGGTTTGGT 60.481 45.455 0.00 0.00 0.00 3.67
4996 6913 2.024176 TAATTCAGCTCGAAGGGTGC 57.976 50.000 0.00 0.00 36.95 5.01
4997 6914 0.036732 AATTCAGCTCGAAGGGTGCA 59.963 50.000 0.00 0.00 36.95 4.57
4998 6915 0.254178 ATTCAGCTCGAAGGGTGCAT 59.746 50.000 0.00 0.00 36.95 3.96
4999 6916 0.674581 TTCAGCTCGAAGGGTGCATG 60.675 55.000 0.00 0.00 37.60 4.06
5335 7254 5.772393 TCCAACCTTACATAACCATGACT 57.228 39.130 0.00 0.00 35.96 3.41
5495 7414 5.475909 TCATTATGTATGTACTCCCTCCGTC 59.524 44.000 0.00 0.00 35.64 4.79
5690 7615 7.440523 AGCTTGGAGTTTTACTGAATGTTAG 57.559 36.000 0.00 0.00 0.00 2.34
5809 7746 6.753279 TCAAAATTTGAGCTCAACTTTGACTG 59.247 34.615 35.31 29.60 39.92 3.51
5810 7747 5.841957 AATTTGAGCTCAACTTTGACTGT 57.158 34.783 28.46 3.93 35.28 3.55
5811 7748 6.942532 AATTTGAGCTCAACTTTGACTGTA 57.057 33.333 28.46 10.49 35.28 2.74
5812 7749 6.942532 ATTTGAGCTCAACTTTGACTGTAA 57.057 33.333 28.46 9.96 35.28 2.41
5813 7750 6.751514 TTTGAGCTCAACTTTGACTGTAAA 57.248 33.333 28.46 6.59 35.28 2.01
5814 7751 6.942532 TTGAGCTCAACTTTGACTGTAAAT 57.057 33.333 25.16 0.00 32.90 1.40
5815 7752 6.942532 TGAGCTCAACTTTGACTGTAAATT 57.057 33.333 15.67 0.00 32.90 1.82
5816 7753 7.333528 TGAGCTCAACTTTGACTGTAAATTT 57.666 32.000 15.67 0.00 32.90 1.82
5817 7754 7.195646 TGAGCTCAACTTTGACTGTAAATTTG 58.804 34.615 15.67 0.00 33.84 2.32
5818 7755 7.100458 AGCTCAACTTTGACTGTAAATTTGT 57.900 32.000 0.00 0.00 34.07 2.83
5819 7756 7.196331 AGCTCAACTTTGACTGTAAATTTGTC 58.804 34.615 0.00 0.53 34.07 3.18
5820 7757 7.067494 AGCTCAACTTTGACTGTAAATTTGTCT 59.933 33.333 0.00 0.00 34.07 3.41
5864 7801 7.333921 TGGCACAAAAATTATGACATTGGATTC 59.666 33.333 0.00 0.00 31.92 2.52
5987 7925 6.681729 TTTATATGTGGGATGAGGGAGTAC 57.318 41.667 0.00 0.00 0.00 2.73
6023 7961 8.556213 TCCGTTAGTTGCTTTAAGTTGAATAT 57.444 30.769 0.00 0.00 0.00 1.28
6024 7962 9.656040 TCCGTTAGTTGCTTTAAGTTGAATATA 57.344 29.630 0.00 0.00 0.00 0.86
6044 7982 9.448438 GAATATAATCACATATGGGCACTTGTA 57.552 33.333 7.80 1.44 0.00 2.41
6045 7983 8.792830 ATATAATCACATATGGGCACTTGTAC 57.207 34.615 7.80 0.00 0.00 2.90
6046 7984 4.778213 ATCACATATGGGCACTTGTACT 57.222 40.909 7.80 0.00 0.00 2.73
6047 7985 5.887214 ATCACATATGGGCACTTGTACTA 57.113 39.130 7.80 0.00 0.00 1.82
6048 7986 5.276461 TCACATATGGGCACTTGTACTAG 57.724 43.478 7.80 2.56 0.00 2.57
6049 7987 4.100963 TCACATATGGGCACTTGTACTAGG 59.899 45.833 7.80 0.00 0.00 3.02
6050 7988 4.037927 ACATATGGGCACTTGTACTAGGT 58.962 43.478 7.80 0.00 0.00 3.08
6051 7989 5.069914 CACATATGGGCACTTGTACTAGGTA 59.930 44.000 7.80 0.00 0.00 3.08
6052 7990 5.844516 ACATATGGGCACTTGTACTAGGTAT 59.155 40.000 7.80 0.00 0.00 2.73
6053 7991 4.689612 ATGGGCACTTGTACTAGGTATG 57.310 45.455 9.17 0.00 0.00 2.39
6054 7992 3.446968 TGGGCACTTGTACTAGGTATGT 58.553 45.455 9.17 0.00 0.00 2.29
6270 8208 4.272991 CCTCTCAGTTCTATTGAATGCTGC 59.727 45.833 0.00 0.00 34.40 5.25
6283 8221 1.259840 ATGCTGCCCCATCCAAACAC 61.260 55.000 0.00 0.00 0.00 3.32
6289 8227 1.047002 CCCCATCCAAACACTTTGCA 58.953 50.000 0.00 0.00 39.31 4.08
6568 8506 7.510549 TCCAAAGAAGAATCAAATTTCGTCT 57.489 32.000 0.00 0.00 43.36 4.18
6607 8545 0.981183 TACGTGAGGGCTGTTGGATT 59.019 50.000 0.00 0.00 0.00 3.01
6656 8594 3.862845 GCCTGTTTTTGAAATTCGTGTGT 59.137 39.130 0.00 0.00 0.00 3.72
6721 8659 9.668497 AAGGTACATCTATTAGTTTCTTGTTCC 57.332 33.333 0.00 0.00 0.00 3.62
6735 8673 4.681744 TCTTGTTCCTTTGTTGATTGTGC 58.318 39.130 0.00 0.00 0.00 4.57
6747 8685 4.199310 GTTGATTGTGCTGGGCTCTAATA 58.801 43.478 0.00 0.00 0.00 0.98
6758 8696 6.542370 TGCTGGGCTCTAATATAAAAAGTGAC 59.458 38.462 0.00 0.00 0.00 3.67
6759 8697 6.292919 GCTGGGCTCTAATATAAAAAGTGACG 60.293 42.308 0.00 0.00 0.00 4.35
6760 8698 5.526111 TGGGCTCTAATATAAAAAGTGACGC 59.474 40.000 0.00 0.00 0.00 5.19
6779 8717 2.016604 GCACCTCAACCCGCATGATAA 61.017 52.381 0.00 0.00 0.00 1.75
6782 8720 3.381272 CACCTCAACCCGCATGATAATTT 59.619 43.478 0.00 0.00 0.00 1.82
6823 8761 6.275494 TCACTCGAGTAATATTGTTGTCCA 57.725 37.500 19.57 0.00 0.00 4.02
6824 8762 6.873997 TCACTCGAGTAATATTGTTGTCCAT 58.126 36.000 19.57 0.00 0.00 3.41
6825 8763 6.978659 TCACTCGAGTAATATTGTTGTCCATC 59.021 38.462 19.57 0.00 0.00 3.51
6838 8779 0.740737 GTCCATCGGCCAATCCTTTG 59.259 55.000 2.24 0.00 0.00 2.77
6848 8789 5.245075 TCGGCCAATCCTTTGTTTTCTAAAT 59.755 36.000 2.24 0.00 0.00 1.40
6881 8822 6.719370 TCATTGTTTGCCTTACCTGTCTTATT 59.281 34.615 0.00 0.00 0.00 1.40
6910 8851 8.499162 CAAATCAGATATAAGAAAACTAGCCCG 58.501 37.037 0.00 0.00 0.00 6.13
6911 8852 5.539048 TCAGATATAAGAAAACTAGCCCGC 58.461 41.667 0.00 0.00 0.00 6.13
6912 8853 5.304614 TCAGATATAAGAAAACTAGCCCGCT 59.695 40.000 0.00 0.00 0.00 5.52
6965 8906 0.541998 TGGACTCGAGAAGGGCAAGA 60.542 55.000 21.68 0.00 0.00 3.02
7031 8972 2.614481 GGCGAGCCCGGATATGAAAATA 60.614 50.000 0.73 0.00 36.06 1.40
7032 8973 3.071479 GCGAGCCCGGATATGAAAATAA 58.929 45.455 0.73 0.00 36.06 1.40
7112 9053 7.332430 AGGCACATGACACATTTGATTTTTATG 59.668 33.333 0.00 0.00 0.00 1.90
7181 9122 7.949690 TTTGGATCACAAGATGAGAAATGAT 57.050 32.000 0.00 0.00 41.91 2.45
7297 9243 3.836146 TCCTTGATTCCTTGGCATATGG 58.164 45.455 4.56 0.00 0.00 2.74
7421 9367 2.388735 TCTGTAGAATGGCGGACTGAT 58.611 47.619 0.00 0.00 0.00 2.90
7470 9416 4.315803 TCAAGGTCGAAGGAAATGTCTTC 58.684 43.478 0.00 0.00 37.76 2.87
7540 9504 5.719563 CCAAAATCTGGTTATAGGGGTTGTT 59.280 40.000 0.00 0.00 40.78 2.83
7549 9513 6.183361 TGGTTATAGGGGTTGTTGTTGTCTTA 60.183 38.462 0.00 0.00 0.00 2.10
7574 9538 1.769733 GCAATGTCATTGTTGCGTGT 58.230 45.000 23.27 0.00 40.95 4.49
7575 9539 2.126467 GCAATGTCATTGTTGCGTGTT 58.874 42.857 23.27 0.00 40.95 3.32
7576 9540 2.097299 GCAATGTCATTGTTGCGTGTTG 60.097 45.455 23.27 0.00 40.95 3.33
7577 9541 3.114809 CAATGTCATTGTTGCGTGTTGT 58.885 40.909 16.15 0.00 35.57 3.32
7578 9542 2.929531 TGTCATTGTTGCGTGTTGTT 57.070 40.000 0.00 0.00 0.00 2.83
7579 9543 2.524034 TGTCATTGTTGCGTGTTGTTG 58.476 42.857 0.00 0.00 0.00 3.33
7581 9545 0.226734 CATTGTTGCGTGTTGTTGCG 59.773 50.000 0.00 0.00 0.00 4.85
7582 9546 0.179150 ATTGTTGCGTGTTGTTGCGT 60.179 45.000 0.00 0.00 0.00 5.24
7583 9547 0.794981 TTGTTGCGTGTTGTTGCGTC 60.795 50.000 0.00 0.00 0.00 5.19
7584 9548 2.022069 TTGCGTGTTGTTGCGTCG 59.978 55.556 0.00 0.00 0.00 5.12
7595 9559 2.907431 TTGCGTCGTATGCAACTGT 58.093 47.368 9.48 0.00 44.37 3.55
7617 9581 3.056250 TGCCATGGCGAACATTGTAATTT 60.056 39.130 30.87 0.00 45.51 1.82
7670 9634 6.715280 ACCATCAGACAGATTTCTATGTTGT 58.285 36.000 0.00 0.00 33.72 3.32
7671 9635 7.851228 ACCATCAGACAGATTTCTATGTTGTA 58.149 34.615 0.00 0.00 33.72 2.41
7672 9636 7.766278 ACCATCAGACAGATTTCTATGTTGTAC 59.234 37.037 0.00 0.00 33.72 2.90
7689 9653 8.741603 ATGTTGTACTAACTTGTAAGGTGTTT 57.258 30.769 0.00 0.00 0.00 2.83
7728 9770 1.860950 CTATCGGCACAACAATCGGAG 59.139 52.381 0.00 0.00 0.00 4.63
7756 9798 2.366916 AGCACCCAGATAGTAGCACATC 59.633 50.000 0.00 0.00 0.00 3.06
7757 9799 2.366916 GCACCCAGATAGTAGCACATCT 59.633 50.000 0.00 0.00 31.58 2.90
7758 9800 3.181461 GCACCCAGATAGTAGCACATCTT 60.181 47.826 0.00 0.00 28.88 2.40
7856 9898 3.199508 AGCTGGAATGCTGACTTGTATCT 59.800 43.478 0.00 0.00 42.33 1.98
7862 9904 6.070824 TGGAATGCTGACTTGTATCTGAGTTA 60.071 38.462 0.00 0.00 0.00 2.24
7950 10044 4.858692 CGCACATAAAGATGAAAAAGGGTG 59.141 41.667 0.00 0.00 36.48 4.61
8040 10134 3.347216 AGGCGTAATGAGCAACTTCATT 58.653 40.909 6.50 6.50 46.53 2.57
8105 10199 1.741525 GTTGCCCTTCTTTGCAGCA 59.258 52.632 0.00 0.00 38.41 4.41
8120 10214 1.449246 AGCAGCATCCACTCGCTTC 60.449 57.895 0.00 0.00 35.96 3.86
8307 10409 0.531532 CCCCTAGACGCATCAGCTTG 60.532 60.000 0.00 0.00 39.10 4.01
8351 10453 9.914834 ATGCCACTGAACCTACTTATTTATTTA 57.085 29.630 0.00 0.00 0.00 1.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.237393 TGCAAAATGGGTCTTGTTGC 57.763 45.000 0.00 0.00 43.79 4.17
1 2 5.331098 GTTTTTGCAAAATGGGTCTTGTTG 58.669 37.500 24.39 0.00 0.00 3.33
14 15 7.836842 ACTAAAGAAGAAGAGGTTTTTGCAAA 58.163 30.769 8.05 8.05 0.00 3.68
22 23 6.828785 TGCAGAAAACTAAAGAAGAAGAGGTT 59.171 34.615 0.00 0.00 0.00 3.50
78 79 0.180406 AAATTAGATGCGGCGGGAGT 59.820 50.000 9.78 0.00 0.00 3.85
99 100 4.946157 ACCCATGAAAAATGTTGTTGCAAA 59.054 33.333 0.00 0.00 0.00 3.68
101 102 4.125703 GACCCATGAAAAATGTTGTTGCA 58.874 39.130 0.00 0.00 0.00 4.08
102 103 4.379652 AGACCCATGAAAAATGTTGTTGC 58.620 39.130 0.00 0.00 0.00 4.17
103 104 8.606040 AATTAGACCCATGAAAAATGTTGTTG 57.394 30.769 0.00 0.00 0.00 3.33
105 106 9.271828 GAAAATTAGACCCATGAAAAATGTTGT 57.728 29.630 0.00 0.00 0.00 3.32
106 107 9.492973 AGAAAATTAGACCCATGAAAAATGTTG 57.507 29.630 0.00 0.00 0.00 3.33
108 109 7.603784 GCAGAAAATTAGACCCATGAAAAATGT 59.396 33.333 0.00 0.00 0.00 2.71
109 110 7.603404 TGCAGAAAATTAGACCCATGAAAAATG 59.397 33.333 0.00 0.00 0.00 2.32
110 111 7.678837 TGCAGAAAATTAGACCCATGAAAAAT 58.321 30.769 0.00 0.00 0.00 1.82
115 116 5.076182 TGTTGCAGAAAATTAGACCCATGA 58.924 37.500 0.00 0.00 0.00 3.07
116 117 5.389859 TGTTGCAGAAAATTAGACCCATG 57.610 39.130 0.00 0.00 0.00 3.66
118 119 5.324409 AGATGTTGCAGAAAATTAGACCCA 58.676 37.500 0.00 0.00 0.00 4.51
119 120 5.904362 AGATGTTGCAGAAAATTAGACCC 57.096 39.130 0.00 0.00 0.00 4.46
121 122 7.862372 TGTGAAAGATGTTGCAGAAAATTAGAC 59.138 33.333 0.00 0.00 0.00 2.59
122 123 7.862372 GTGTGAAAGATGTTGCAGAAAATTAGA 59.138 33.333 0.00 0.00 0.00 2.10
123 124 7.149080 CGTGTGAAAGATGTTGCAGAAAATTAG 60.149 37.037 0.00 0.00 0.00 1.73
124 125 6.636447 CGTGTGAAAGATGTTGCAGAAAATTA 59.364 34.615 0.00 0.00 0.00 1.40
126 127 4.977963 CGTGTGAAAGATGTTGCAGAAAAT 59.022 37.500 0.00 0.00 0.00 1.82
128 129 3.376859 ACGTGTGAAAGATGTTGCAGAAA 59.623 39.130 0.00 0.00 0.00 2.52
147 148 3.149196 AGATGTGCAGAAAATTGGACGT 58.851 40.909 0.00 0.00 41.69 4.34
152 153 4.387862 GCCTGAAAGATGTGCAGAAAATTG 59.612 41.667 0.00 0.00 34.07 2.32
173 175 3.552604 TGTTGCAGAAAATTAGACGCC 57.447 42.857 0.00 0.00 0.00 5.68
206 208 4.869297 TGGAAGATGTTGTTGCAACTTTTG 59.131 37.500 28.61 0.00 32.77 2.44
207 209 5.083533 TGGAAGATGTTGTTGCAACTTTT 57.916 34.783 28.61 11.11 32.77 2.27
208 210 4.734398 TGGAAGATGTTGTTGCAACTTT 57.266 36.364 28.61 13.60 32.77 2.66
209 211 4.942761 ATGGAAGATGTTGTTGCAACTT 57.057 36.364 28.61 14.47 34.81 2.66
211 213 3.184986 GCAATGGAAGATGTTGTTGCAAC 59.815 43.478 22.83 22.83 41.01 4.17
212 214 3.391965 GCAATGGAAGATGTTGTTGCAA 58.608 40.909 0.00 0.00 41.01 4.08
213 215 2.607526 CGCAATGGAAGATGTTGTTGCA 60.608 45.455 13.65 0.00 41.31 4.08
214 216 1.987770 CGCAATGGAAGATGTTGTTGC 59.012 47.619 6.79 6.79 38.74 4.17
216 218 3.149196 AGACGCAATGGAAGATGTTGTT 58.851 40.909 0.00 0.00 0.00 2.83
223 225 5.391950 GCAGAAAATTAGACGCAATGGAAGA 60.392 40.000 0.00 0.00 0.00 2.87
424 440 1.374758 CGAGCTCAGTTTCCCGCTT 60.375 57.895 15.40 0.00 31.96 4.68
499 516 4.293648 CACCAGTGTCCGCGTCCA 62.294 66.667 4.92 0.00 0.00 4.02
532 549 1.961277 CAAGAACTGGAGCCGCGTT 60.961 57.895 4.92 0.00 0.00 4.84
545 562 2.844946 TCGCCACATCTGAAACAAGAA 58.155 42.857 0.00 0.00 0.00 2.52
560 577 2.434331 CAAGTTCCCCCTTCGCCA 59.566 61.111 0.00 0.00 0.00 5.69
565 582 3.979497 CCGCCCAAGTTCCCCCTT 61.979 66.667 0.00 0.00 0.00 3.95
569 586 2.440247 CATCCCGCCCAAGTTCCC 60.440 66.667 0.00 0.00 0.00 3.97
640 657 3.399181 ATCGTCACCGGTGGGCAT 61.399 61.111 33.40 19.09 36.48 4.40
670 687 5.612688 TCCTAATTATCCCTTCTGGCTCATT 59.387 40.000 0.00 0.00 0.00 2.57
687 704 4.385977 CCTTCCCCGGTTTACATCCTAATT 60.386 45.833 0.00 0.00 0.00 1.40
699 716 1.497716 ACTTTTTCTCCTTCCCCGGTT 59.502 47.619 0.00 0.00 0.00 4.44
730 1017 4.341487 TCTCAACGTTATCTTCTCCTCCA 58.659 43.478 0.00 0.00 0.00 3.86
738 1025 5.012768 TCCTTCCCTTTCTCAACGTTATCTT 59.987 40.000 0.00 0.00 0.00 2.40
745 2452 3.618690 ATCTCCTTCCCTTTCTCAACG 57.381 47.619 0.00 0.00 0.00 4.10
768 2475 0.685097 GCACTGAGGGTACACCAAGA 59.315 55.000 0.00 0.00 43.89 3.02
883 2590 6.825944 AAAAACTTGCCAGCCTTTTAAAAA 57.174 29.167 1.66 0.00 0.00 1.94
910 2617 1.389682 ACCCCCTCCCCCTCAAAAA 60.390 57.895 0.00 0.00 0.00 1.94
911 2618 2.167037 CACCCCCTCCCCCTCAAAA 61.167 63.158 0.00 0.00 0.00 2.44
912 2619 2.534272 CACCCCCTCCCCCTCAAA 60.534 66.667 0.00 0.00 0.00 2.69
913 2620 4.693915 CCACCCCCTCCCCCTCAA 62.694 72.222 0.00 0.00 0.00 3.02
920 2627 3.992641 CAAACCCCCACCCCCTCC 61.993 72.222 0.00 0.00 0.00 4.30
921 2628 3.992641 CCAAACCCCCACCCCCTC 61.993 72.222 0.00 0.00 0.00 4.30
924 2631 3.852421 AACCCAAACCCCCACCCC 61.852 66.667 0.00 0.00 0.00 4.95
925 2632 2.395180 ATCAACCCAAACCCCCACCC 62.395 60.000 0.00 0.00 0.00 4.61
926 2633 0.472925 AATCAACCCAAACCCCCACC 60.473 55.000 0.00 0.00 0.00 4.61
927 2634 1.429930 AAATCAACCCAAACCCCCAC 58.570 50.000 0.00 0.00 0.00 4.61
928 2635 2.198334 AAAATCAACCCAAACCCCCA 57.802 45.000 0.00 0.00 0.00 4.96
929 2636 4.919774 AATAAAATCAACCCAAACCCCC 57.080 40.909 0.00 0.00 0.00 5.40
930 2637 7.225011 TGTAAAATAAAATCAACCCAAACCCC 58.775 34.615 0.00 0.00 0.00 4.95
931 2638 8.678593 TTGTAAAATAAAATCAACCCAAACCC 57.321 30.769 0.00 0.00 0.00 4.11
936 2643 9.936759 GAAGGATTGTAAAATAAAATCAACCCA 57.063 29.630 3.42 0.00 32.96 4.51
937 2644 9.936759 TGAAGGATTGTAAAATAAAATCAACCC 57.063 29.630 3.42 0.00 32.96 4.11
946 2653 8.726988 GCACAGTACTGAAGGATTGTAAAATAA 58.273 33.333 29.30 0.00 0.00 1.40
947 2654 7.880713 TGCACAGTACTGAAGGATTGTAAAATA 59.119 33.333 29.30 0.00 0.00 1.40
948 2655 6.714810 TGCACAGTACTGAAGGATTGTAAAAT 59.285 34.615 29.30 0.00 0.00 1.82
949 2656 6.017440 GTGCACAGTACTGAAGGATTGTAAAA 60.017 38.462 29.30 1.69 0.00 1.52
950 2657 5.468746 GTGCACAGTACTGAAGGATTGTAAA 59.531 40.000 29.30 3.92 0.00 2.01
951 2658 4.994852 GTGCACAGTACTGAAGGATTGTAA 59.005 41.667 29.30 6.18 0.00 2.41
952 2659 4.566004 GTGCACAGTACTGAAGGATTGTA 58.434 43.478 29.30 12.23 0.00 2.41
953 2660 3.403038 GTGCACAGTACTGAAGGATTGT 58.597 45.455 29.30 1.80 0.00 2.71
954 2661 2.413112 CGTGCACAGTACTGAAGGATTG 59.587 50.000 29.30 16.11 0.00 2.67
955 2662 2.299013 TCGTGCACAGTACTGAAGGATT 59.701 45.455 29.30 2.44 0.00 3.01
956 2663 1.893137 TCGTGCACAGTACTGAAGGAT 59.107 47.619 29.30 3.25 0.00 3.24
957 2664 1.324383 TCGTGCACAGTACTGAAGGA 58.676 50.000 29.30 18.25 0.00 3.36
958 2665 2.148916 TTCGTGCACAGTACTGAAGG 57.851 50.000 29.30 17.62 0.00 3.46
959 2666 2.668457 GGATTCGTGCACAGTACTGAAG 59.332 50.000 29.30 20.25 0.00 3.02
960 2667 2.683968 GGATTCGTGCACAGTACTGAA 58.316 47.619 29.30 12.07 0.00 3.02
961 2668 1.402325 CGGATTCGTGCACAGTACTGA 60.402 52.381 29.30 4.07 0.00 3.41
962 2669 0.992072 CGGATTCGTGCACAGTACTG 59.008 55.000 21.44 21.44 0.00 2.74
963 2670 0.108804 CCGGATTCGTGCACAGTACT 60.109 55.000 18.64 0.00 33.95 2.73
964 2671 0.389426 ACCGGATTCGTGCACAGTAC 60.389 55.000 18.64 5.15 33.95 2.73
965 2672 0.108992 GACCGGATTCGTGCACAGTA 60.109 55.000 18.64 4.11 33.95 2.74
966 2673 1.374252 GACCGGATTCGTGCACAGT 60.374 57.895 18.64 0.93 33.95 3.55
967 2674 1.354337 CTGACCGGATTCGTGCACAG 61.354 60.000 18.64 9.95 33.95 3.66
968 2675 1.374125 CTGACCGGATTCGTGCACA 60.374 57.895 18.64 0.00 33.95 4.57
969 2676 0.949105 AACTGACCGGATTCGTGCAC 60.949 55.000 9.46 6.82 33.95 4.57
970 2677 0.669318 GAACTGACCGGATTCGTGCA 60.669 55.000 9.46 0.00 33.95 4.57
971 2678 0.669318 TGAACTGACCGGATTCGTGC 60.669 55.000 9.46 0.00 33.95 5.34
983 2690 3.076621 GGCATCTGTTGTGATGAACTGA 58.923 45.455 8.46 0.00 44.71 3.41
986 2693 2.076100 TCGGCATCTGTTGTGATGAAC 58.924 47.619 8.46 0.55 44.71 3.18
991 2698 0.602638 GTGGTCGGCATCTGTTGTGA 60.603 55.000 0.00 0.00 0.00 3.58
996 2703 2.994995 TCGGTGGTCGGCATCTGT 60.995 61.111 0.00 0.00 39.77 3.41
1003 2710 2.125673 GATGTGGTCGGTGGTCGG 60.126 66.667 0.00 0.00 39.77 4.79
1286 2993 1.141234 CCCTCCCTCTTACGCGAAC 59.859 63.158 15.93 0.00 0.00 3.95
1332 3039 2.813908 CGCTTTAACTCGCCGCCT 60.814 61.111 0.00 0.00 0.00 5.52
1354 3061 6.302269 AGGAAGAAAGCAAATCTGAGAAAGA 58.698 36.000 0.00 0.00 39.94 2.52
1362 3069 5.014018 AGAGGAAGAGGAAGAAAGCAAATCT 59.986 40.000 0.00 0.00 0.00 2.40
1382 3089 3.274288 AGCAAAGCCGATTAAAGAGAGG 58.726 45.455 0.00 0.00 0.00 3.69
1454 3163 6.958193 GCTATATCGCACTGATTTCATTTAGC 59.042 38.462 0.00 0.00 38.57 3.09
1469 3178 4.695455 GCCCTTAAAATCTGCTATATCGCA 59.305 41.667 1.55 1.55 38.40 5.10
1470 3179 4.938226 AGCCCTTAAAATCTGCTATATCGC 59.062 41.667 0.00 0.00 0.00 4.58
1471 3180 5.163814 GCAGCCCTTAAAATCTGCTATATCG 60.164 44.000 12.53 0.00 46.00 2.92
1472 3181 6.188400 GCAGCCCTTAAAATCTGCTATATC 57.812 41.667 12.53 0.00 46.00 1.63
1479 3188 6.705863 AAATAGAGCAGCCCTTAAAATCTG 57.294 37.500 0.00 0.00 0.00 2.90
1504 3230 8.514594 CAAGGAAGAAAAATAGTGTGCTATGAA 58.485 33.333 0.00 0.00 37.92 2.57
1535 3261 1.890876 ACGTGCACCTATTCAGCAAA 58.109 45.000 12.15 0.00 40.35 3.68
1551 3277 2.794910 CTCATCGTCTGACAACAAACGT 59.205 45.455 8.73 0.00 40.71 3.99
1560 3286 1.403679 CCTCCAGTCTCATCGTCTGAC 59.596 57.143 0.00 0.00 0.00 3.51
1596 3322 5.309020 AGCTAGAAGATGATTATTGCCCTGA 59.691 40.000 0.00 0.00 0.00 3.86
1681 3407 7.120923 AGTCCTAAAAGTCTAAACACTGTCA 57.879 36.000 0.00 0.00 0.00 3.58
1717 3445 9.170734 GCTCATGCTTATCCTTTATGATCATAA 57.829 33.333 21.67 21.67 36.03 1.90
1767 3496 2.027745 GCTCCCAAAGAGACACTGATGA 60.028 50.000 0.00 0.00 46.50 2.92
1770 3499 1.345741 CTGCTCCCAAAGAGACACTGA 59.654 52.381 0.00 0.00 46.50 3.41
1786 3515 2.124819 CTGCCGAGGAATGCTGCT 60.125 61.111 0.00 0.00 0.00 4.24
1792 3521 5.615925 AATTTAGTACTCTGCCGAGGAAT 57.384 39.130 10.11 2.58 41.71 3.01
1817 3546 7.035612 GGAATTCCGCAATACTTTCTTTTCAT 58.964 34.615 9.17 0.00 0.00 2.57
1835 3564 6.461509 CCACATTACAGCAAATAGGGAATTCC 60.462 42.308 16.74 16.74 0.00 3.01
1836 3565 6.321181 TCCACATTACAGCAAATAGGGAATTC 59.679 38.462 0.00 0.00 0.00 2.17
1857 3586 3.010420 GTTTCCTCTGCAAGGTATCCAC 58.990 50.000 12.71 0.00 46.32 4.02
1872 3601 4.229582 TCATAGGGCCAATTGTAGTTTCCT 59.770 41.667 6.18 4.58 0.00 3.36
1889 3618 3.069158 CCCGGGTGTAGTAGTTTCATAGG 59.931 52.174 14.18 0.00 0.00 2.57
1893 3622 0.609662 GCCCGGGTGTAGTAGTTTCA 59.390 55.000 24.63 0.00 0.00 2.69
1895 3624 0.837260 TGGCCCGGGTGTAGTAGTTT 60.837 55.000 24.63 0.00 0.00 2.66
1926 3655 6.576662 TGTTTACGGATTTCTTAAATGCCA 57.423 33.333 0.00 0.00 36.02 4.92
1928 3657 7.062839 TGCATTGTTTACGGATTTCTTAAATGC 59.937 33.333 0.00 0.00 43.89 3.56
1929 3658 8.459521 TGCATTGTTTACGGATTTCTTAAATG 57.540 30.769 0.00 0.00 0.00 2.32
1930 3659 9.086336 CATGCATTGTTTACGGATTTCTTAAAT 57.914 29.630 0.00 0.00 0.00 1.40
1933 3662 7.151999 ACATGCATTGTTTACGGATTTCTTA 57.848 32.000 0.00 0.00 33.74 2.10
1934 3663 6.024552 ACATGCATTGTTTACGGATTTCTT 57.975 33.333 0.00 0.00 33.74 2.52
1935 3664 5.643379 ACATGCATTGTTTACGGATTTCT 57.357 34.783 0.00 0.00 33.74 2.52
1936 3665 6.318628 TGTACATGCATTGTTTACGGATTTC 58.681 36.000 0.00 0.00 39.87 2.17
1937 3666 6.260870 TGTACATGCATTGTTTACGGATTT 57.739 33.333 0.00 0.00 39.87 2.17
1938 3667 5.163663 CCTGTACATGCATTGTTTACGGATT 60.164 40.000 0.00 0.00 39.87 3.01
1939 3668 4.335315 CCTGTACATGCATTGTTTACGGAT 59.665 41.667 0.00 0.00 39.87 4.18
1940 3669 3.687212 CCTGTACATGCATTGTTTACGGA 59.313 43.478 0.00 0.00 39.87 4.69
1941 3670 3.438781 ACCTGTACATGCATTGTTTACGG 59.561 43.478 0.00 1.66 39.87 4.02
1942 3671 4.678509 ACCTGTACATGCATTGTTTACG 57.321 40.909 0.00 0.00 39.87 3.18
1943 3672 6.007936 TCAACCTGTACATGCATTGTTTAC 57.992 37.500 0.00 0.00 39.87 2.01
1962 3691 5.351465 CCGCCTGACCACATAATATATCAAC 59.649 44.000 0.00 0.00 0.00 3.18
2039 3802 5.682862 CACAAGAAACAAGAAAGATGGTTCG 59.317 40.000 0.00 0.00 46.61 3.95
2139 3902 7.148590 CGTTAACGGGTAACACTAGCTAATTTT 60.149 37.037 20.24 0.00 42.03 1.82
2141 3904 5.807011 CGTTAACGGGTAACACTAGCTAATT 59.193 40.000 20.24 0.00 42.03 1.40
2159 3922 8.944212 ACTATAGTCAAACAAATTGCGTTAAC 57.056 30.769 0.00 0.00 38.98 2.01
2217 3984 4.617253 ACATGTAGCACAAACTCCACTA 57.383 40.909 0.00 0.00 0.00 2.74
2356 4123 9.541143 GTCCATTTGAAATCCTAAAAAGACAAA 57.459 29.630 0.00 0.00 0.00 2.83
2362 4129 8.581578 GTGGTAGTCCATTTGAAATCCTAAAAA 58.418 33.333 0.00 0.00 46.20 1.94
2363 4130 7.726291 TGTGGTAGTCCATTTGAAATCCTAAAA 59.274 33.333 0.00 0.00 46.20 1.52
2364 4131 7.235079 TGTGGTAGTCCATTTGAAATCCTAAA 58.765 34.615 0.00 0.00 46.20 1.85
2365 4132 6.785076 TGTGGTAGTCCATTTGAAATCCTAA 58.215 36.000 0.00 0.00 46.20 2.69
2366 4133 6.381498 TGTGGTAGTCCATTTGAAATCCTA 57.619 37.500 0.00 0.00 46.20 2.94
2367 4134 5.255397 TGTGGTAGTCCATTTGAAATCCT 57.745 39.130 0.00 0.00 46.20 3.24
2368 4135 6.238374 CGTATGTGGTAGTCCATTTGAAATCC 60.238 42.308 0.00 0.00 46.20 3.01
2369 4136 6.238374 CCGTATGTGGTAGTCCATTTGAAATC 60.238 42.308 0.00 0.00 46.20 2.17
2370 4137 5.588648 CCGTATGTGGTAGTCCATTTGAAAT 59.411 40.000 0.00 0.00 46.20 2.17
2371 4138 4.938832 CCGTATGTGGTAGTCCATTTGAAA 59.061 41.667 0.00 0.00 46.20 2.69
2372 4139 4.223255 TCCGTATGTGGTAGTCCATTTGAA 59.777 41.667 0.00 0.00 46.20 2.69
2373 4140 3.770388 TCCGTATGTGGTAGTCCATTTGA 59.230 43.478 0.00 0.00 46.20 2.69
2374 4141 4.131649 TCCGTATGTGGTAGTCCATTTG 57.868 45.455 0.00 0.00 46.20 2.32
2375 4142 4.163458 ACATCCGTATGTGGTAGTCCATTT 59.837 41.667 0.00 0.00 44.79 2.32
2376 4143 3.709653 ACATCCGTATGTGGTAGTCCATT 59.290 43.478 0.00 0.00 44.79 3.16
2377 4144 3.305720 ACATCCGTATGTGGTAGTCCAT 58.694 45.455 0.00 0.00 44.79 3.41
2378 4145 2.742348 ACATCCGTATGTGGTAGTCCA 58.258 47.619 0.00 0.00 44.79 4.02
2379 4146 6.770746 ATATACATCCGTATGTGGTAGTCC 57.229 41.667 3.56 0.00 45.99 3.85
2380 4147 8.610896 GTCTATATACATCCGTATGTGGTAGTC 58.389 40.741 3.56 0.00 45.99 2.59
2381 4148 8.105197 TGTCTATATACATCCGTATGTGGTAGT 58.895 37.037 3.56 0.00 45.99 2.73
2382 4149 8.396390 GTGTCTATATACATCCGTATGTGGTAG 58.604 40.741 3.56 3.93 45.99 3.18
2384 4151 6.717997 TGTGTCTATATACATCCGTATGTGGT 59.282 38.462 3.56 0.00 45.99 4.16
2392 4159 9.692749 ACACTAAAATGTGTCTATATACATCCG 57.307 33.333 0.00 0.00 46.90 4.18
2423 4191 3.937814 ACATACGGAGCAAAATGAGTGA 58.062 40.909 0.00 0.00 0.00 3.41
2426 4194 5.005779 GTGACTACATACGGAGCAAAATGAG 59.994 44.000 0.00 0.00 0.00 2.90
2433 4201 2.823747 ACAAGTGACTACATACGGAGCA 59.176 45.455 0.00 0.00 0.00 4.26
2434 4202 3.505464 ACAAGTGACTACATACGGAGC 57.495 47.619 0.00 0.00 0.00 4.70
2435 4203 7.878477 TTTTAACAAGTGACTACATACGGAG 57.122 36.000 0.00 0.00 0.00 4.63
2436 4204 8.308931 AGATTTTAACAAGTGACTACATACGGA 58.691 33.333 0.00 0.00 0.00 4.69
2437 4205 8.475331 AGATTTTAACAAGTGACTACATACGG 57.525 34.615 0.00 0.00 0.00 4.02
2438 4206 9.355215 AGAGATTTTAACAAGTGACTACATACG 57.645 33.333 0.00 0.00 0.00 3.06
2462 4230 9.685828 CCGTTCCAAAATATTTGTCTTTTTAGA 57.314 29.630 0.39 0.00 0.00 2.10
2463 4231 9.685828 TCCGTTCCAAAATATTTGTCTTTTTAG 57.314 29.630 0.39 0.00 0.00 1.85
2464 4232 9.685828 CTCCGTTCCAAAATATTTGTCTTTTTA 57.314 29.630 0.39 0.00 0.00 1.52
2465 4233 7.655732 CCTCCGTTCCAAAATATTTGTCTTTTT 59.344 33.333 0.39 0.00 0.00 1.94
2466 4234 7.014808 TCCTCCGTTCCAAAATATTTGTCTTTT 59.985 33.333 0.39 0.00 0.00 2.27
2467 4235 6.492087 TCCTCCGTTCCAAAATATTTGTCTTT 59.508 34.615 0.39 0.00 0.00 2.52
2468 4236 6.007703 TCCTCCGTTCCAAAATATTTGTCTT 58.992 36.000 0.39 0.00 0.00 3.01
2469 4237 5.566469 TCCTCCGTTCCAAAATATTTGTCT 58.434 37.500 0.39 0.00 0.00 3.41
2470 4238 5.890424 TCCTCCGTTCCAAAATATTTGTC 57.110 39.130 0.39 0.00 0.00 3.18
2471 4239 5.773176 ACTTCCTCCGTTCCAAAATATTTGT 59.227 36.000 0.39 0.00 0.00 2.83
2472 4240 6.267496 ACTTCCTCCGTTCCAAAATATTTG 57.733 37.500 0.39 0.00 0.00 2.32
2473 4241 7.173032 ACTACTTCCTCCGTTCCAAAATATTT 58.827 34.615 0.00 0.00 0.00 1.40
2474 4242 6.718294 ACTACTTCCTCCGTTCCAAAATATT 58.282 36.000 0.00 0.00 0.00 1.28
2475 4243 6.309389 ACTACTTCCTCCGTTCCAAAATAT 57.691 37.500 0.00 0.00 0.00 1.28
2476 4244 5.750352 ACTACTTCCTCCGTTCCAAAATA 57.250 39.130 0.00 0.00 0.00 1.40
2477 4245 4.635699 ACTACTTCCTCCGTTCCAAAAT 57.364 40.909 0.00 0.00 0.00 1.82
2482 4250 6.402456 ACATATAACTACTTCCTCCGTTCC 57.598 41.667 0.00 0.00 0.00 3.62
2604 4374 6.261381 ACTGAGCCGTTAAAACAGAACAAATA 59.739 34.615 0.00 0.00 33.53 1.40
2613 4383 5.935789 AGCTTTATACTGAGCCGTTAAAACA 59.064 36.000 0.00 0.00 39.71 2.83
2641 4411 9.632638 AATACATCAATTAGACAATTAGTGCCT 57.367 29.630 0.00 0.00 32.96 4.75
2659 4429 8.879759 GGTTACAATCTTTCTCGAAATACATCA 58.120 33.333 0.00 0.00 0.00 3.07
2660 4430 9.099454 AGGTTACAATCTTTCTCGAAATACATC 57.901 33.333 0.00 0.00 0.00 3.06
2877 4647 9.434275 TCCAATAGATGTTCCTAGTTGATAGAA 57.566 33.333 0.00 0.00 32.76 2.10
2982 4754 9.590451 ACTAGAATTGTTGCCATTTTCATAATG 57.410 29.630 0.00 0.00 0.00 1.90
2987 4759 6.265196 ACAGACTAGAATTGTTGCCATTTTCA 59.735 34.615 0.00 0.00 0.00 2.69
3009 4781 6.791887 ACAGAACAATGTGATGAGTTACAG 57.208 37.500 5.28 0.00 30.46 2.74
3010 4782 7.566760 AAACAGAACAATGTGATGAGTTACA 57.433 32.000 5.28 0.00 32.52 2.41
3011 4783 8.230486 CCTAAACAGAACAATGTGATGAGTTAC 58.770 37.037 5.28 0.00 32.52 2.50
3012 4784 7.936847 ACCTAAACAGAACAATGTGATGAGTTA 59.063 33.333 5.28 3.35 32.52 2.24
3013 4785 6.772716 ACCTAAACAGAACAATGTGATGAGTT 59.227 34.615 5.28 0.00 32.52 3.01
3022 4795 4.298332 GCCAACACCTAAACAGAACAATG 58.702 43.478 0.00 0.00 0.00 2.82
3042 4815 0.536915 AGACGGAGGGAGTATACGCC 60.537 60.000 16.69 16.69 34.88 5.68
3053 4826 3.181468 GGTCTAATAAACCCAGACGGAGG 60.181 52.174 0.00 0.00 39.68 4.30
3054 4827 3.449737 TGGTCTAATAAACCCAGACGGAG 59.550 47.826 0.00 0.00 39.68 4.63
3055 4828 3.196254 GTGGTCTAATAAACCCAGACGGA 59.804 47.826 0.00 0.00 39.68 4.69
3056 4829 3.528532 GTGGTCTAATAAACCCAGACGG 58.471 50.000 0.00 0.00 39.68 4.79
3057 4830 3.197116 AGGTGGTCTAATAAACCCAGACG 59.803 47.826 0.00 0.00 39.68 4.18
3058 4831 4.838904 AGGTGGTCTAATAAACCCAGAC 57.161 45.455 0.00 0.00 38.36 3.51
3059 4832 4.600111 ACAAGGTGGTCTAATAAACCCAGA 59.400 41.667 0.00 0.00 35.84 3.86
3060 4833 4.918588 ACAAGGTGGTCTAATAAACCCAG 58.081 43.478 0.00 0.00 35.84 4.45
3061 4834 6.645884 ATACAAGGTGGTCTAATAAACCCA 57.354 37.500 0.00 0.00 35.84 4.51
3062 4835 7.949690 AAATACAAGGTGGTCTAATAAACCC 57.050 36.000 0.00 0.00 35.84 4.11
3063 4836 9.634163 CAAAAATACAAGGTGGTCTAATAAACC 57.366 33.333 0.00 0.00 37.31 3.27
3067 4840 9.575868 TTGACAAAAATACAAGGTGGTCTAATA 57.424 29.630 0.00 0.00 0.00 0.98
3068 4841 8.472007 TTGACAAAAATACAAGGTGGTCTAAT 57.528 30.769 0.00 0.00 0.00 1.73
3069 4842 7.883391 TTGACAAAAATACAAGGTGGTCTAA 57.117 32.000 0.00 0.00 0.00 2.10
3070 4843 7.558444 AGTTTGACAAAAATACAAGGTGGTCTA 59.442 33.333 1.27 0.00 0.00 2.59
3072 4845 6.569780 AGTTTGACAAAAATACAAGGTGGTC 58.430 36.000 1.27 0.00 0.00 4.02
3073 4846 6.538945 AGTTTGACAAAAATACAAGGTGGT 57.461 33.333 1.27 0.00 0.00 4.16
3074 4847 7.547370 TCAAAGTTTGACAAAAATACAAGGTGG 59.453 33.333 14.35 0.00 34.08 4.61
3075 4848 8.472683 TCAAAGTTTGACAAAAATACAAGGTG 57.527 30.769 14.35 0.00 34.08 4.00
3092 4865 7.069331 TGTTAGTTTCATGGATGGTCAAAGTTT 59.931 33.333 0.00 0.00 0.00 2.66
3093 4866 6.549364 TGTTAGTTTCATGGATGGTCAAAGTT 59.451 34.615 0.00 0.00 0.00 2.66
3094 4867 6.068010 TGTTAGTTTCATGGATGGTCAAAGT 58.932 36.000 0.00 0.00 0.00 2.66
3095 4868 6.573664 TGTTAGTTTCATGGATGGTCAAAG 57.426 37.500 0.00 0.00 0.00 2.77
3097 4870 6.968263 TTTGTTAGTTTCATGGATGGTCAA 57.032 33.333 0.00 0.00 0.00 3.18
3099 4872 8.519526 TGTATTTTGTTAGTTTCATGGATGGTC 58.480 33.333 0.00 0.00 0.00 4.02
3100 4873 8.415950 TGTATTTTGTTAGTTTCATGGATGGT 57.584 30.769 0.00 0.00 0.00 3.55
3101 4874 9.703892 TTTGTATTTTGTTAGTTTCATGGATGG 57.296 29.630 0.00 0.00 0.00 3.51
3146 4919 8.748412 CCTCCTTCAAATACAAATCCAACAATA 58.252 33.333 0.00 0.00 0.00 1.90
3147 4920 7.235399 ACCTCCTTCAAATACAAATCCAACAAT 59.765 33.333 0.00 0.00 0.00 2.71
3148 4921 6.553100 ACCTCCTTCAAATACAAATCCAACAA 59.447 34.615 0.00 0.00 0.00 2.83
3150 4923 6.590234 ACCTCCTTCAAATACAAATCCAAC 57.410 37.500 0.00 0.00 0.00 3.77
3151 4924 7.610580 AAACCTCCTTCAAATACAAATCCAA 57.389 32.000 0.00 0.00 0.00 3.53
3154 4927 7.666623 TGGAAAACCTCCTTCAAATACAAATC 58.333 34.615 0.00 0.00 45.64 2.17
3158 4931 8.893563 ATTATGGAAAACCTCCTTCAAATACA 57.106 30.769 0.00 0.00 45.64 2.29
3217 4990 9.923143 GGCTAAAGTTTGACCATAAATTTAACT 57.077 29.630 1.21 0.00 0.00 2.24
3218 4991 9.146984 GGGCTAAAGTTTGACCATAAATTTAAC 57.853 33.333 1.21 0.00 30.90 2.01
3219 4992 8.871125 TGGGCTAAAGTTTGACCATAAATTTAA 58.129 29.630 1.21 0.00 36.14 1.52
3220 4993 8.423906 TGGGCTAAAGTTTGACCATAAATTTA 57.576 30.769 8.14 0.00 36.14 1.40
3222 4995 6.926630 TGGGCTAAAGTTTGACCATAAATT 57.073 33.333 8.14 0.00 36.14 1.82
3225 4998 6.732896 TTTTGGGCTAAAGTTTGACCATAA 57.267 33.333 11.83 10.77 40.74 1.90
3227 5000 5.306678 TCATTTTGGGCTAAAGTTTGACCAT 59.693 36.000 11.83 0.00 40.74 3.55
3228 5001 4.651503 TCATTTTGGGCTAAAGTTTGACCA 59.348 37.500 8.14 8.14 39.36 4.02
3229 5002 5.208463 TCATTTTGGGCTAAAGTTTGACC 57.792 39.130 0.00 0.75 0.00 4.02
3230 5003 6.202762 CCTTTCATTTTGGGCTAAAGTTTGAC 59.797 38.462 0.00 0.00 0.00 3.18
3232 5005 5.469760 CCCTTTCATTTTGGGCTAAAGTTTG 59.530 40.000 0.00 0.00 33.88 2.93
3233 5006 5.456042 CCCCTTTCATTTTGGGCTAAAGTTT 60.456 40.000 0.00 0.00 39.61 2.66
3234 5007 4.041567 CCCCTTTCATTTTGGGCTAAAGTT 59.958 41.667 0.00 0.00 39.61 2.66
3235 5008 3.582647 CCCCTTTCATTTTGGGCTAAAGT 59.417 43.478 0.00 0.00 39.61 2.66
3236 5009 3.055167 CCCCCTTTCATTTTGGGCTAAAG 60.055 47.826 0.00 0.00 39.61 1.85
3237 5010 2.909662 CCCCCTTTCATTTTGGGCTAAA 59.090 45.455 0.00 0.00 39.61 1.85
3238 5011 2.545810 CCCCCTTTCATTTTGGGCTAA 58.454 47.619 0.00 0.00 39.61 3.09
3240 5013 3.087343 CCCCCTTTCATTTTGGGCT 57.913 52.632 0.00 0.00 39.61 5.19
3242 5015 0.547471 AGGCCCCCTTTCATTTTGGG 60.547 55.000 0.00 0.00 40.59 4.12
3243 5016 2.246091 TAGGCCCCCTTTCATTTTGG 57.754 50.000 0.00 0.00 34.61 3.28
3245 5018 5.190925 GGTTTATTAGGCCCCCTTTCATTTT 59.809 40.000 0.00 0.00 34.61 1.82
3247 5020 4.295201 GGTTTATTAGGCCCCCTTTCATT 58.705 43.478 0.00 0.00 34.61 2.57
3248 5021 3.374873 GGGTTTATTAGGCCCCCTTTCAT 60.375 47.826 0.00 0.00 36.46 2.57
3249 5022 2.023791 GGGTTTATTAGGCCCCCTTTCA 60.024 50.000 0.00 0.00 36.46 2.69
3250 5023 2.674420 GGGTTTATTAGGCCCCCTTTC 58.326 52.381 0.00 0.00 36.46 2.62
3253 5026 1.358051 CCGGGTTTATTAGGCCCCCT 61.358 60.000 0.00 0.00 39.22 4.79
3254 5027 1.152138 CCGGGTTTATTAGGCCCCC 59.848 63.158 0.00 0.00 39.22 5.40
3255 5028 1.529948 GCCGGGTTTATTAGGCCCC 60.530 63.158 2.18 0.00 43.54 5.80
3260 5033 5.295152 CAAGTAGTAGGCCGGGTTTATTAG 58.705 45.833 2.18 0.00 0.00 1.73
3261 5034 4.101430 CCAAGTAGTAGGCCGGGTTTATTA 59.899 45.833 2.18 0.00 0.00 0.98
3262 5035 3.118149 CCAAGTAGTAGGCCGGGTTTATT 60.118 47.826 2.18 0.00 0.00 1.40
3263 5036 2.436911 CCAAGTAGTAGGCCGGGTTTAT 59.563 50.000 2.18 0.00 0.00 1.40
3264 5037 1.832998 CCAAGTAGTAGGCCGGGTTTA 59.167 52.381 2.18 0.00 0.00 2.01
3267 5040 0.252375 TTCCAAGTAGTAGGCCGGGT 60.252 55.000 2.18 0.00 0.00 5.28
3268 5041 0.464452 CTTCCAAGTAGTAGGCCGGG 59.536 60.000 2.18 0.00 0.00 5.73
3270 5043 0.179081 GGCTTCCAAGTAGTAGGCCG 60.179 60.000 0.00 0.00 0.00 6.13
3353 5152 0.030773 TGCGTAGGCATAAGAGAGCG 59.969 55.000 5.89 0.00 46.21 5.03
3365 5164 7.582679 CGTTGAGTATGAAAAATAATGCGTAGG 59.417 37.037 0.00 0.00 0.00 3.18
3418 5217 8.253810 TGTAATCCTGTGACAAAATGACAAAAA 58.746 29.630 0.00 0.00 0.00 1.94
3434 5233 5.445964 ACAAAGAACCTTGTGTAATCCTGT 58.554 37.500 0.00 0.00 38.12 4.00
3622 5424 4.646572 AGTTTGAACTGATGGAGAAGGTC 58.353 43.478 0.00 0.00 37.98 3.85
3640 5442 5.020795 ACCAACCAGTAGAACCAAAAGTTT 58.979 37.500 0.00 0.00 39.40 2.66
3641 5443 4.401202 CACCAACCAGTAGAACCAAAAGTT 59.599 41.667 0.00 0.00 43.07 2.66
3745 5547 1.202806 CCGAGGTCATGCCATTACCAT 60.203 52.381 10.54 0.00 40.61 3.55
3748 5550 1.583054 GTCCGAGGTCATGCCATTAC 58.417 55.000 8.58 0.00 40.61 1.89
3764 5566 4.520846 CAAATCAGCGGCGCGTCC 62.521 66.667 27.59 7.39 0.00 4.79
3773 5575 2.679837 TGAAAGATCGAGCCAAATCAGC 59.320 45.455 0.00 0.00 0.00 4.26
3784 5586 1.000394 TGTCTTGCGGTGAAAGATCGA 60.000 47.619 0.00 0.00 36.14 3.59
3831 5633 0.318699 CTCGTCTTCAGGTTGCGTGA 60.319 55.000 0.00 0.00 0.00 4.35
3847 5649 2.669391 GCTTGCTGGATTTGTTTCCTCG 60.669 50.000 0.00 0.00 36.68 4.63
3855 5657 1.411394 CACGTTGCTTGCTGGATTTG 58.589 50.000 0.00 0.00 0.00 2.32
3925 5727 3.005554 CTCATGATTGCGTGAAGGTTCT 58.994 45.455 0.00 0.00 39.43 3.01
3944 5746 5.502544 GCGCTGATGGTTATCAAGTAAACTC 60.503 44.000 0.00 0.00 42.48 3.01
3946 5748 4.094294 TGCGCTGATGGTTATCAAGTAAAC 59.906 41.667 9.73 0.00 42.48 2.01
3951 5753 2.283298 ACTGCGCTGATGGTTATCAAG 58.717 47.619 21.92 0.75 42.48 3.02
4017 5819 8.585881 CCAGATTAGAGGAGGTCGAATTTTATA 58.414 37.037 0.00 0.00 31.19 0.98
4018 5820 7.445945 CCAGATTAGAGGAGGTCGAATTTTAT 58.554 38.462 0.00 0.00 31.19 1.40
4026 5828 0.676736 GCCCAGATTAGAGGAGGTCG 59.323 60.000 0.00 0.00 0.00 4.79
4030 5832 0.249657 GTGCGCCCAGATTAGAGGAG 60.250 60.000 4.18 0.00 0.00 3.69
4057 5859 3.456277 GGCCATCCCCTCACCTATATAAG 59.544 52.174 0.00 0.00 0.00 1.73
4091 5893 2.225091 TGGAATTCTGGTCCATGCTTGT 60.225 45.455 5.23 0.00 40.33 3.16
4092 5894 2.449464 TGGAATTCTGGTCCATGCTTG 58.551 47.619 5.23 0.00 40.33 4.01
4094 5896 2.042162 AGTTGGAATTCTGGTCCATGCT 59.958 45.455 5.23 0.00 44.62 3.79
4116 5918 0.629596 TCTAGTCTGGGTCGGACCAT 59.370 55.000 27.32 10.65 41.02 3.55
4126 5928 4.514401 GGGTTGGTTTGTATCTAGTCTGG 58.486 47.826 0.00 0.00 0.00 3.86
4156 5958 3.250220 CGCATAATTTGGGCCGAAC 57.750 52.632 8.77 0.00 0.00 3.95
4167 5969 1.375853 TTTGAGCCTGCGCGCATAAT 61.376 50.000 36.48 22.69 44.72 1.28
4168 5970 1.375853 ATTTGAGCCTGCGCGCATAA 61.376 50.000 36.48 20.49 44.72 1.90
4171 5973 2.435762 TATTTGAGCCTGCGCGCA 60.436 55.556 34.12 34.12 43.61 6.09
4251 6053 0.539051 ACATGTCTAGCTCCAGGTGC 59.461 55.000 5.25 5.25 0.00 5.01
4301 6103 6.282930 CCAATTTCAGAACACCACAAGAATT 58.717 36.000 0.00 0.00 0.00 2.17
4303 6105 4.099266 CCCAATTTCAGAACACCACAAGAA 59.901 41.667 0.00 0.00 0.00 2.52
4305 6107 3.799917 GCCCAATTTCAGAACACCACAAG 60.800 47.826 0.00 0.00 0.00 3.16
4306 6108 2.102252 GCCCAATTTCAGAACACCACAA 59.898 45.455 0.00 0.00 0.00 3.33
4313 6116 4.082190 GGAGGTAAAGCCCAATTTCAGAAC 60.082 45.833 0.00 0.00 38.26 3.01
4330 6133 2.225779 TGTTCCCATGAAGGAGGAGGTA 60.226 50.000 0.00 0.00 41.22 3.08
4333 6136 1.407989 GCTGTTCCCATGAAGGAGGAG 60.408 57.143 0.00 0.00 41.22 3.69
4447 6251 2.941720 GTGCAGGTCAAGAAGGATGATC 59.058 50.000 0.00 0.00 0.00 2.92
4450 6254 2.189594 TGTGCAGGTCAAGAAGGATG 57.810 50.000 0.00 0.00 0.00 3.51
4855 6767 9.512588 GTACCAAGGTAGTACAGCTCTATATAA 57.487 37.037 2.06 0.00 39.90 0.98
4916 6829 1.002792 CGCATCATGGATTCACAGCAG 60.003 52.381 0.00 0.00 0.00 4.24
5367 7286 5.169836 ACAGAAGAAACGTGGAATGAAAC 57.830 39.130 0.00 0.00 0.00 2.78
5495 7414 8.120465 GTGTCAAAATACGTCTTACATTATGGG 58.880 37.037 0.00 0.00 0.00 4.00
5532 7457 4.806892 TCCGTCCCATAAGGTAAGACATA 58.193 43.478 0.00 0.00 36.75 2.29
5762 7699 5.716228 TGATGTGGCCTTTTAGATGTTGATT 59.284 36.000 3.32 0.00 0.00 2.57
5829 7766 9.236691 GTCATAATTTTTGTGCCATGTGTATAG 57.763 33.333 0.00 0.00 0.00 1.31
5864 7801 5.385509 ACATTGGAAACCCTTTGAATACG 57.614 39.130 0.00 0.00 0.00 3.06
5926 7864 6.032956 TCTGAGCTTAACTCCACGAATTTA 57.967 37.500 0.00 0.00 45.61 1.40
5987 7925 4.390909 AGCAACTAACGGATCTAAAAACGG 59.609 41.667 0.00 0.00 0.00 4.44
6023 7961 6.247229 AGTACAAGTGCCCATATGTGATTA 57.753 37.500 1.24 0.00 0.00 1.75
6024 7962 5.116084 AGTACAAGTGCCCATATGTGATT 57.884 39.130 1.24 0.00 0.00 2.57
6029 7967 4.689612 ACCTAGTACAAGTGCCCATATG 57.310 45.455 0.00 0.00 0.00 1.78
6044 7982 4.402793 CACAGAACCAGCTACATACCTAGT 59.597 45.833 0.00 0.00 0.00 2.57
6045 7983 4.737946 GCACAGAACCAGCTACATACCTAG 60.738 50.000 0.00 0.00 0.00 3.02
6046 7984 3.132289 GCACAGAACCAGCTACATACCTA 59.868 47.826 0.00 0.00 0.00 3.08
6047 7985 2.093447 GCACAGAACCAGCTACATACCT 60.093 50.000 0.00 0.00 0.00 3.08
6048 7986 2.093447 AGCACAGAACCAGCTACATACC 60.093 50.000 0.00 0.00 36.73 2.73
6049 7987 3.252974 AGCACAGAACCAGCTACATAC 57.747 47.619 0.00 0.00 36.73 2.39
6050 7988 3.676049 CGAAGCACAGAACCAGCTACATA 60.676 47.826 0.00 0.00 37.70 2.29
6051 7989 2.704572 GAAGCACAGAACCAGCTACAT 58.295 47.619 0.00 0.00 37.70 2.29
6052 7990 1.605457 CGAAGCACAGAACCAGCTACA 60.605 52.381 0.00 0.00 37.70 2.74
6053 7991 1.071605 CGAAGCACAGAACCAGCTAC 58.928 55.000 0.00 0.00 37.70 3.58
6054 7992 0.679505 ACGAAGCACAGAACCAGCTA 59.320 50.000 0.00 0.00 37.70 3.32
6218 8156 3.990318 AAAGCTGAACTTACAGTTGGC 57.010 42.857 0.00 0.00 38.80 4.52
6270 8208 1.001181 CTGCAAAGTGTTTGGATGGGG 59.999 52.381 1.80 0.00 40.27 4.96
6283 8221 7.274250 GCTTGGTAATATTCAAGAACTGCAAAG 59.726 37.037 16.97 4.67 41.94 2.77
6289 8227 7.121315 GTGGAAGCTTGGTAATATTCAAGAACT 59.879 37.037 16.97 6.28 41.94 3.01
6343 8281 5.260424 TCCAGTACAATGCAACACCATTAT 58.740 37.500 0.00 0.00 33.86 1.28
6345 8283 3.495331 TCCAGTACAATGCAACACCATT 58.505 40.909 0.00 0.00 35.90 3.16
6568 8506 5.412526 GTAACAAACGGTCAATGACTTCA 57.587 39.130 13.53 0.00 32.47 3.02
6607 8545 5.628797 TGGGCTGTGTCAGATGAATATTA 57.371 39.130 0.66 0.00 32.44 0.98
6721 8659 1.342174 AGCCCAGCACAATCAACAAAG 59.658 47.619 0.00 0.00 0.00 2.77
6735 8673 6.292919 GCGTCACTTTTTATATTAGAGCCCAG 60.293 42.308 0.00 0.00 0.00 4.45
6747 8685 3.252458 GGTTGAGGTGCGTCACTTTTTAT 59.748 43.478 9.31 0.00 34.40 1.40
6758 8696 3.803082 CATGCGGGTTGAGGTGCG 61.803 66.667 0.00 0.00 0.00 5.34
6759 8697 0.463654 TATCATGCGGGTTGAGGTGC 60.464 55.000 0.00 0.00 0.00 5.01
6760 8698 2.036958 TTATCATGCGGGTTGAGGTG 57.963 50.000 0.00 0.00 0.00 4.00
6809 8747 4.157849 TGGCCGATGGACAACAATATTA 57.842 40.909 0.00 0.00 38.06 0.98
6812 8750 2.498644 TTGGCCGATGGACAACAATA 57.501 45.000 0.00 0.00 44.30 1.90
6820 8758 0.331278 ACAAAGGATTGGCCGATGGA 59.669 50.000 11.28 0.00 43.43 3.41
6823 8761 3.165071 AGAAAACAAAGGATTGGCCGAT 58.835 40.909 4.69 4.69 43.43 4.18
6824 8762 2.593026 AGAAAACAAAGGATTGGCCGA 58.407 42.857 0.00 0.00 43.43 5.54
6825 8763 4.513198 TTAGAAAACAAAGGATTGGCCG 57.487 40.909 0.00 0.00 43.43 6.13
6848 8789 6.719370 AGGTAAGGCAAACAATGAGTGATTTA 59.281 34.615 0.00 0.00 0.00 1.40
6853 8794 3.569701 ACAGGTAAGGCAAACAATGAGTG 59.430 43.478 0.00 0.00 0.00 3.51
7055 8996 8.174422 CCAAACTTTTACATGGTTTTCAACTTG 58.826 33.333 0.00 0.00 31.87 3.16
7058 8999 7.463515 CGTCCAAACTTTTACATGGTTTTCAAC 60.464 37.037 0.00 0.00 34.50 3.18
7181 9122 5.377478 ACATCTCATGGTCTATCGAGTACA 58.623 41.667 0.00 0.00 33.60 2.90
7297 9243 5.178067 CCAAGAATCCAATGAACTGCAAAAC 59.822 40.000 0.00 0.00 0.00 2.43
7421 9367 7.931407 ACAAGACATACAACATAAGTTCAGACA 59.069 33.333 0.00 0.00 35.28 3.41
7429 9375 8.099364 ACCTTGAACAAGACATACAACATAAG 57.901 34.615 14.99 0.00 40.79 1.73
7470 9416 0.984230 TCCACCTTCAGGCCTTACAG 59.016 55.000 0.00 0.00 39.32 2.74
7540 9504 7.701539 ATGACATTGCCTATTTAAGACAACA 57.298 32.000 0.00 0.00 0.00 3.33
7549 9513 4.175516 CGCAACAATGACATTGCCTATTT 58.824 39.130 24.85 10.81 46.87 1.40
7563 9527 0.179150 ACGCAACAACACGCAACAAT 60.179 45.000 0.00 0.00 0.00 2.71
7573 9537 3.738482 TTGCATACGACGCAACAAC 57.262 47.368 6.77 0.00 44.13 3.32
7577 9541 0.510790 CACAGTTGCATACGACGCAA 59.489 50.000 6.77 6.77 46.67 4.85
7578 9542 2.149555 CACAGTTGCATACGACGCA 58.850 52.632 0.00 0.00 37.68 5.24
7595 9559 1.539157 TTACAATGTTCGCCATGGCA 58.461 45.000 34.93 19.88 42.06 4.92
7617 9581 0.397564 TCAGAGCTGATGTGCACCAA 59.602 50.000 15.69 0.00 34.14 3.67
7645 9609 6.820656 ACAACATAGAAATCTGTCTGATGGTC 59.179 38.462 0.00 0.00 35.21 4.02
7646 9610 6.715280 ACAACATAGAAATCTGTCTGATGGT 58.285 36.000 0.00 0.00 35.21 3.55
7647 9611 7.984050 AGTACAACATAGAAATCTGTCTGATGG 59.016 37.037 0.00 0.00 35.21 3.51
7648 9612 8.939201 AGTACAACATAGAAATCTGTCTGATG 57.061 34.615 0.00 0.00 35.21 3.07
7650 9614 9.856488 GTTAGTACAACATAGAAATCTGTCTGA 57.144 33.333 0.00 0.00 0.00 3.27
7651 9615 9.862371 AGTTAGTACAACATAGAAATCTGTCTG 57.138 33.333 0.00 0.00 0.00 3.51
7689 9653 7.648112 GCCGATAGAATAAGCGATTGATGTATA 59.352 37.037 0.00 0.00 39.76 1.47
7710 9752 1.369091 GCTCCGATTGTTGTGCCGAT 61.369 55.000 0.00 0.00 0.00 4.18
7728 9770 2.648059 ACTATCTGGGTGCTTTCATGC 58.352 47.619 0.00 0.00 0.00 4.06
7756 9798 9.233232 GTTGTGTTTCCTGTGTAAATCTTTAAG 57.767 33.333 0.00 0.00 0.00 1.85
7757 9799 8.740906 TGTTGTGTTTCCTGTGTAAATCTTTAA 58.259 29.630 0.00 0.00 0.00 1.52
7758 9800 8.282455 TGTTGTGTTTCCTGTGTAAATCTTTA 57.718 30.769 0.00 0.00 0.00 1.85
7856 9898 8.869897 CAGCGAGTTGAAGTATTTTATAACTCA 58.130 33.333 13.32 0.00 42.34 3.41
7862 9904 7.707035 CCTAGTCAGCGAGTTGAAGTATTTTAT 59.293 37.037 0.00 0.00 0.00 1.40
8120 10214 1.033574 TTTTTACCCAGGTTGGTGCG 58.966 50.000 0.00 0.00 39.53 5.34
8227 10327 2.260844 TTTTGAGGACTGCAGTCAGG 57.739 50.000 39.71 8.83 46.47 3.86
8228 10328 3.611057 GCAATTTTGAGGACTGCAGTCAG 60.611 47.826 39.71 21.10 46.47 3.51
8274 10374 4.282496 GTCTAGGGGACTGAAATCTGAGA 58.718 47.826 0.00 0.00 43.88 3.27
8275 10375 3.067461 CGTCTAGGGGACTGAAATCTGAG 59.933 52.174 0.00 0.00 43.88 3.35
8307 10409 3.057526 GGCATGGTTAGAACTTGTTGGTC 60.058 47.826 0.00 0.00 0.00 4.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.