Multiple sequence alignment - TraesCS4B01G083300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G083300 chr4B 100.000 7343 0 0 1 7343 82157389 82164731 0.000000e+00 13561
1 TraesCS4B01G083300 chr4B 93.160 614 40 2 192 805 82049084 82049695 0.000000e+00 900
2 TraesCS4B01G083300 chr4B 96.703 91 3 0 5984 6074 104337420 104337330 1.280000e-32 152
3 TraesCS4B01G083300 chr4B 95.652 92 4 0 5983 6074 491017634 491017725 1.650000e-31 148
4 TraesCS4B01G083300 chr4B 91.919 99 7 1 5990 6088 568667435 568667532 3.570000e-28 137
5 TraesCS4B01G083300 chr4D 93.727 4974 204 53 872 5819 55244631 55249522 0.000000e+00 7358
6 TraesCS4B01G083300 chr4D 95.311 1173 48 4 6175 7343 55249687 55250856 0.000000e+00 1855
7 TraesCS4B01G083300 chr4D 91.837 98 6 2 5990 6087 464800971 464801066 1.290000e-27 135
8 TraesCS4B01G083300 chr4A 92.935 4841 222 39 820 5615 541994314 541989549 0.000000e+00 6935
9 TraesCS4B01G083300 chr4A 90.602 1245 93 11 6105 7343 541989044 541987818 0.000000e+00 1629
10 TraesCS4B01G083300 chr3B 90.615 618 54 4 192 806 274601395 274602011 0.000000e+00 817
11 TraesCS4B01G083300 chr3B 90.438 617 55 4 192 805 328592400 328593015 0.000000e+00 809
12 TraesCS4B01G083300 chr3B 90.391 614 54 5 194 805 93632120 93631510 0.000000e+00 802
13 TraesCS4B01G083300 chr3B 90.260 616 56 4 192 805 328521974 328522587 0.000000e+00 802
14 TraesCS4B01G083300 chr3B 90.097 616 56 5 192 805 660749469 660750081 0.000000e+00 795
15 TraesCS4B01G083300 chr3B 92.386 197 12 2 1 194 93632347 93632151 2.020000e-70 278
16 TraesCS4B01G083300 chr3B 92.746 193 11 2 2 191 660749246 660749438 7.260000e-70 276
17 TraesCS4B01G083300 chr3B 91.878 197 13 2 1 194 328592175 328592371 9.390000e-69 272
18 TraesCS4B01G083300 chr3B 92.268 194 12 2 4 194 556983938 556983745 9.390000e-69 272
19 TraesCS4B01G083300 chr1B 90.600 617 54 4 192 805 326842768 326842153 0.000000e+00 815
20 TraesCS4B01G083300 chr1B 90.453 618 54 5 192 805 326809699 326809083 0.000000e+00 809
21 TraesCS4B01G083300 chr1D 83.270 795 120 11 20 805 344195225 344196015 0.000000e+00 719
22 TraesCS4B01G083300 chr1D 95.506 89 4 0 5990 6078 337065189 337065277 7.680000e-30 143
23 TraesCS4B01G083300 chr1D 95.349 86 4 0 5989 6074 335585039 335585124 3.570000e-28 137
24 TraesCS4B01G083300 chr1D 95.294 85 4 0 5990 6074 252473146 252473230 1.290000e-27 135
25 TraesCS4B01G083300 chr1D 91.579 95 7 1 5985 6078 421923325 421923231 5.980000e-26 130
26 TraesCS4B01G083300 chr2B 92.386 197 12 2 1 194 212784391 212784587 2.020000e-70 278
27 TraesCS4B01G083300 chr2B 92.386 197 12 2 1 194 492949629 492949825 2.020000e-70 278
28 TraesCS4B01G083300 chr7B 92.308 195 11 3 4 194 162845989 162845795 2.610000e-69 274
29 TraesCS4B01G083300 chr7B 91.753 194 13 1 4 194 434352843 434352650 4.370000e-67 267
30 TraesCS4B01G083300 chr7A 96.591 88 3 0 5990 6077 467851906 467851819 5.940000e-31 147
31 TraesCS4B01G083300 chr7A 95.556 90 4 0 5987 6076 664477205 664477294 2.140000e-30 145
32 TraesCS4B01G083300 chr3D 96.629 89 2 1 5987 6074 320635252 320635164 5.940000e-31 147
33 TraesCS4B01G083300 chr3D 91.346 104 7 2 5973 6074 411724448 411724345 2.760000e-29 141
34 TraesCS4B01G083300 chr3D 93.617 94 5 1 5985 6077 62360385 62360292 9.930000e-29 139
35 TraesCS4B01G083300 chr6D 95.556 90 4 0 5986 6075 316232385 316232296 2.140000e-30 145
36 TraesCS4B01G083300 chr6D 96.471 85 3 0 5990 6074 168293755 168293839 2.760000e-29 141
37 TraesCS4B01G083300 chr6D 95.294 85 4 0 5990 6074 85081784 85081868 1.290000e-27 135
38 TraesCS4B01G083300 chr6D 95.294 85 4 0 5990 6074 309072504 309072588 1.290000e-27 135
39 TraesCS4B01G083300 chr6D 95.294 85 4 0 5990 6074 363038078 363038162 1.290000e-27 135
40 TraesCS4B01G083300 chr6D 93.333 90 5 1 5986 6074 163130339 163130250 1.660000e-26 132
41 TraesCS4B01G083300 chr6D 94.118 85 5 0 5990 6074 17316711 17316627 5.980000e-26 130
42 TraesCS4B01G083300 chr6D 94.048 84 5 0 5990 6073 89352172 89352255 2.150000e-25 128
43 TraesCS4B01G083300 chr6D 91.209 91 8 0 5987 6077 309072591 309072501 2.780000e-24 124
44 TraesCS4B01G083300 chr6D 88.235 102 11 1 5974 6074 438275716 438275615 3.600000e-23 121
45 TraesCS4B01G083300 chr6B 93.684 95 5 1 5990 6083 416897409 416897315 2.760000e-29 141
46 TraesCS4B01G083300 chr6B 92.784 97 6 1 5978 6074 290606044 290606139 9.930000e-29 139
47 TraesCS4B01G083300 chr6A 94.505 91 5 0 5987 6077 610518790 610518880 2.760000e-29 141
48 TraesCS4B01G083300 chr6A 91.837 98 7 1 5978 6074 38475524 38475621 1.290000e-27 135
49 TraesCS4B01G083300 chr5D 96.471 85 3 0 5990 6074 109535624 109535540 2.760000e-29 141
50 TraesCS4B01G083300 chr5D 96.471 85 3 0 5990 6074 112843010 112842926 2.760000e-29 141
51 TraesCS4B01G083300 chr5D 96.471 85 3 0 5990 6074 294640319 294640235 2.760000e-29 141
52 TraesCS4B01G083300 chr5D 95.349 86 4 0 5989 6074 431293824 431293739 3.570000e-28 137
53 TraesCS4B01G083300 chr2A 96.471 85 3 0 5990 6074 498099527 498099443 2.760000e-29 141
54 TraesCS4B01G083300 chr2D 92.784 97 6 1 5982 6078 220975606 220975511 9.930000e-29 139
55 TraesCS4B01G083300 chrUn 94.444 90 4 1 5987 6075 197752483 197752394 3.570000e-28 137
56 TraesCS4B01G083300 chrUn 91.765 85 7 0 5990 6074 320620153 320620069 1.290000e-22 119
57 TraesCS4B01G083300 chrUn 90.588 85 8 0 5990 6074 76787350 76787434 6.020000e-21 113
58 TraesCS4B01G083300 chrUn 88.298 94 11 0 5981 6074 378270559 378270652 6.020000e-21 113
59 TraesCS4B01G083300 chrUn 90.588 85 8 0 5990 6074 447954346 447954262 6.020000e-21 113
60 TraesCS4B01G083300 chrUn 88.172 93 11 0 5990 6082 95984986 95984894 2.170000e-20 111
61 TraesCS4B01G083300 chrUn 89.655 87 9 0 5990 6076 278959723 278959809 2.170000e-20 111
62 TraesCS4B01G083300 chrUn 89.655 87 9 0 5990 6076 291808236 291808150 2.170000e-20 111
63 TraesCS4B01G083300 chrUn 89.655 87 9 0 5990 6076 296076518 296076432 2.170000e-20 111


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G083300 chr4B 82157389 82164731 7342 False 13561.0 13561 100.0000 1 7343 1 chr4B.!!$F2 7342
1 TraesCS4B01G083300 chr4B 82049084 82049695 611 False 900.0 900 93.1600 192 805 1 chr4B.!!$F1 613
2 TraesCS4B01G083300 chr4D 55244631 55250856 6225 False 4606.5 7358 94.5190 872 7343 2 chr4D.!!$F2 6471
3 TraesCS4B01G083300 chr4A 541987818 541994314 6496 True 4282.0 6935 91.7685 820 7343 2 chr4A.!!$R1 6523
4 TraesCS4B01G083300 chr3B 274601395 274602011 616 False 817.0 817 90.6150 192 806 1 chr3B.!!$F1 614
5 TraesCS4B01G083300 chr3B 328521974 328522587 613 False 802.0 802 90.2600 192 805 1 chr3B.!!$F2 613
6 TraesCS4B01G083300 chr3B 328592175 328593015 840 False 540.5 809 91.1580 1 805 2 chr3B.!!$F3 804
7 TraesCS4B01G083300 chr3B 93631510 93632347 837 True 540.0 802 91.3885 1 805 2 chr3B.!!$R2 804
8 TraesCS4B01G083300 chr3B 660749246 660750081 835 False 535.5 795 91.4215 2 805 2 chr3B.!!$F4 803
9 TraesCS4B01G083300 chr1B 326842153 326842768 615 True 815.0 815 90.6000 192 805 1 chr1B.!!$R2 613
10 TraesCS4B01G083300 chr1B 326809083 326809699 616 True 809.0 809 90.4530 192 805 1 chr1B.!!$R1 613
11 TraesCS4B01G083300 chr1D 344195225 344196015 790 False 719.0 719 83.2700 20 805 1 chr1D.!!$F4 785

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
438 478 0.387929 GGCATGCAGTAGTACCGCTA 59.612 55.000 21.36 0.00 0.00 4.26 F
1275 1327 1.004440 GAACCTCGCCAGTTGCTCT 60.004 57.895 0.00 0.00 38.05 4.09 F
2098 2153 0.178924 AGGGGCTGCAACCTTGATTT 60.179 50.000 6.03 0.00 31.68 2.17 F
2664 2721 1.217511 CTGGCTGATCTGCTGTCGT 59.782 57.895 21.99 0.00 0.00 4.34 F
3441 3499 1.018226 GCAGCCAGCACTAGTCACAG 61.018 60.000 0.00 0.00 44.79 3.66 F
4033 4093 2.162319 TCGTGTAGTTCTGCATGCAA 57.838 45.000 22.88 10.06 0.00 4.08 F
5839 5984 0.380024 CGCCATTGACACACAACACA 59.620 50.000 0.00 0.00 41.52 3.72 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1334 1386 0.106819 AGCATGAGGCCTGATTCCAC 60.107 55.000 12.00 0.00 46.50 4.02 R
2747 2805 0.039527 GAAACACCATGGTCAACGGC 60.040 55.000 16.53 0.00 0.00 5.68 R
3405 3463 0.522626 TGCTGTTCCACATTCATGCG 59.477 50.000 0.00 0.00 0.00 4.73 R
4650 4715 4.021456 TCCACTATATAGATTGCACCACGG 60.021 45.833 16.79 1.77 0.00 4.94 R
4767 4832 1.685517 TGTGCACAAAATAGGCTGCAA 59.314 42.857 19.28 0.00 41.17 4.08 R
5917 6062 0.036294 CACTTTTCCCTCTCCCGGTC 60.036 60.000 0.00 0.00 0.00 4.79 R
6892 7126 0.036199 AAGAAGCAGCAGGAGCAGAG 60.036 55.000 0.00 0.00 45.49 3.35 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
97 98 3.034635 GGGATAGTCAAGCCAGAGAAGA 58.965 50.000 0.00 0.00 0.00 2.87
136 137 1.674441 CATCCGTGACTACTTCCGCTA 59.326 52.381 0.00 0.00 0.00 4.26
438 478 0.387929 GGCATGCAGTAGTACCGCTA 59.612 55.000 21.36 0.00 0.00 4.26
454 494 2.030717 CCGCTATGTGGAGCAGTACTAG 60.031 54.545 0.00 0.00 42.99 2.57
461 501 1.384989 GGAGCAGTACTAGCGCCTGA 61.385 60.000 23.03 0.00 46.69 3.86
584 626 1.972075 TGTACGTGAGATTCCACCCAA 59.028 47.619 0.00 0.00 33.67 4.12
592 634 4.100963 GTGAGATTCCACCCAAAACCTTTT 59.899 41.667 0.00 0.00 0.00 2.27
600 642 1.202313 CCCAAAACCTTTTCAACGCGA 60.202 47.619 15.93 0.00 0.00 5.87
601 643 2.116366 CCAAAACCTTTTCAACGCGAG 58.884 47.619 15.93 4.76 0.00 5.03
626 668 4.344390 CCCCTCTTAATAGTACGGCTTTCT 59.656 45.833 0.00 0.00 0.00 2.52
656 698 3.619233 AATCCACCGAAAAGAAACGTG 57.381 42.857 0.00 0.00 0.00 4.49
739 781 6.933521 AGATATATCTGAAACGCTCAAAGCAT 59.066 34.615 14.60 0.00 37.06 3.79
745 787 3.181521 TGAAACGCTCAAAGCATACGATG 60.182 43.478 0.00 0.00 42.58 3.84
752 794 2.165641 TCAAAGCATACGATGAGTCCGT 59.834 45.455 0.00 0.20 43.26 4.69
787 832 8.154203 TGTCATCAATCACCAAAACTACTAAGA 58.846 33.333 0.00 0.00 0.00 2.10
788 833 8.999431 GTCATCAATCACCAAAACTACTAAGAA 58.001 33.333 0.00 0.00 0.00 2.52
814 860 4.431416 TGTGACCTTACACAGTGGAATT 57.569 40.909 5.31 0.00 44.29 2.17
815 861 4.787551 TGTGACCTTACACAGTGGAATTT 58.212 39.130 5.31 0.00 44.29 1.82
816 862 5.197451 TGTGACCTTACACAGTGGAATTTT 58.803 37.500 5.31 0.00 44.29 1.82
817 863 5.654650 TGTGACCTTACACAGTGGAATTTTT 59.345 36.000 5.31 0.00 44.29 1.94
818 864 6.829298 TGTGACCTTACACAGTGGAATTTTTA 59.171 34.615 5.31 0.00 44.29 1.52
848 894 9.942850 AAATCTTTTCTCCACTTTTCTTTTGAA 57.057 25.926 0.00 0.00 36.52 2.69
849 895 9.591792 AATCTTTTCTCCACTTTTCTTTTGAAG 57.408 29.630 0.00 0.00 39.88 3.02
857 903 5.220970 CCACTTTTCTTTTGAAGCGAAGGTA 60.221 40.000 0.00 0.00 39.88 3.08
858 904 6.262601 CACTTTTCTTTTGAAGCGAAGGTAA 58.737 36.000 0.00 0.00 39.88 2.85
859 905 6.750039 CACTTTTCTTTTGAAGCGAAGGTAAA 59.250 34.615 0.00 0.00 39.88 2.01
860 906 7.274686 CACTTTTCTTTTGAAGCGAAGGTAAAA 59.725 33.333 0.00 0.00 39.88 1.52
861 907 7.979537 ACTTTTCTTTTGAAGCGAAGGTAAAAT 59.020 29.630 0.00 0.00 39.88 1.82
862 908 7.924103 TTTCTTTTGAAGCGAAGGTAAAATC 57.076 32.000 0.00 0.00 39.88 2.17
863 909 6.009115 TCTTTTGAAGCGAAGGTAAAATCC 57.991 37.500 0.00 0.00 37.06 3.01
864 910 5.768164 TCTTTTGAAGCGAAGGTAAAATCCT 59.232 36.000 0.00 0.00 37.06 3.24
865 911 5.622770 TTTGAAGCGAAGGTAAAATCCTC 57.377 39.130 0.00 0.00 37.06 3.71
866 912 3.606687 TGAAGCGAAGGTAAAATCCTCC 58.393 45.455 0.00 0.00 37.06 4.30
867 913 2.311124 AGCGAAGGTAAAATCCTCCG 57.689 50.000 0.00 0.00 38.35 4.63
868 914 1.553704 AGCGAAGGTAAAATCCTCCGT 59.446 47.619 0.00 0.00 37.64 4.69
869 915 1.664151 GCGAAGGTAAAATCCTCCGTG 59.336 52.381 0.00 0.00 37.64 4.94
870 916 2.277084 CGAAGGTAAAATCCTCCGTGG 58.723 52.381 0.00 0.00 36.74 4.94
883 929 2.731571 CCGTGGTCCGTGGGATCAT 61.732 63.158 0.22 0.00 45.26 2.45
890 936 3.139077 GGTCCGTGGGATCATTTGTATC 58.861 50.000 0.00 0.00 32.11 2.24
1122 1171 4.607025 GTTCCCCGCAAACCCCCA 62.607 66.667 0.00 0.00 0.00 4.96
1199 1248 5.449588 CCGACCGTAGCTCTAAACTATTTCA 60.450 44.000 0.00 0.00 0.00 2.69
1217 1266 2.489971 TCAAAATCCATCCGTATCCGC 58.510 47.619 0.00 0.00 0.00 5.54
1243 1292 2.515057 TTCCGTGTTTGCTGCGGT 60.515 55.556 0.00 0.00 45.11 5.68
1248 1297 2.186826 GTGTTTGCTGCGGTCTGGT 61.187 57.895 0.00 0.00 0.00 4.00
1259 1311 2.288025 GGTCTGGTACCGCTGGGAA 61.288 63.158 7.57 0.00 38.88 3.97
1275 1327 1.004440 GAACCTCGCCAGTTGCTCT 60.004 57.895 0.00 0.00 38.05 4.09
1294 1346 4.433615 CTCTGCGGCTCTAAATTACTTGA 58.566 43.478 0.00 0.00 0.00 3.02
1295 1347 4.433615 TCTGCGGCTCTAAATTACTTGAG 58.566 43.478 0.00 0.00 0.00 3.02
1296 1348 4.081642 TCTGCGGCTCTAAATTACTTGAGT 60.082 41.667 0.00 0.00 0.00 3.41
1316 1368 6.106003 TGAGTATTAATGACATGCTCGTTGT 58.894 36.000 0.00 0.00 36.46 3.32
1322 1374 3.378911 TGACATGCTCGTTGTTGTCTA 57.621 42.857 0.00 0.00 39.33 2.59
1334 1386 7.426456 GCTCGTTGTTGTCTATGATTATGTTTG 59.574 37.037 0.00 0.00 0.00 2.93
1383 1435 4.095610 GTTTGTGTAATTACGCCTCATGC 58.904 43.478 22.94 6.98 35.92 4.06
1395 1447 3.181455 ACGCCTCATGCTTGATTATGGTA 60.181 43.478 2.33 0.00 38.05 3.25
1403 1457 9.234827 CTCATGCTTGATTATGGTATGGAATTA 57.765 33.333 2.33 0.00 0.00 1.40
1412 1466 9.793252 GATTATGGTATGGAATTATGATTGTGC 57.207 33.333 0.00 0.00 0.00 4.57
1424 1478 1.379843 ATTGTGCGGTTGGGATCCC 60.380 57.895 25.22 25.22 0.00 3.85
1430 1484 3.078836 GGTTGGGATCCCGGACGA 61.079 66.667 26.03 4.80 39.42 4.20
1445 1499 1.593006 GGACGATGATGTTTGGCGTAG 59.407 52.381 0.00 0.00 35.09 3.51
1449 1503 3.615496 ACGATGATGTTTGGCGTAGTTAC 59.385 43.478 0.00 0.00 32.94 2.50
1469 1523 6.539464 AGTTACGTTTTCTGGTCAACACATTA 59.461 34.615 0.00 0.00 0.00 1.90
1474 1528 6.202188 CGTTTTCTGGTCAACACATTACTACT 59.798 38.462 0.00 0.00 0.00 2.57
1540 1594 9.726232 CTGTCACAATATCAGAATAAATGGTTG 57.274 33.333 0.00 0.00 0.00 3.77
1632 1687 2.679996 GCCGGGGCAAAGGTTCAT 60.680 61.111 2.18 0.00 41.49 2.57
1702 1757 4.528596 AGTGTTAGTACAGTTCCAGATGCT 59.471 41.667 0.00 0.00 34.20 3.79
1737 1792 9.775854 ATCTGGATGTTATTCACTAAATCTGAG 57.224 33.333 0.00 0.00 0.00 3.35
1739 1794 7.282585 TGGATGTTATTCACTAAATCTGAGGG 58.717 38.462 0.00 0.00 0.00 4.30
1780 1835 3.140325 TGTTCAGGAAGGACATTGGTC 57.860 47.619 0.00 0.00 43.55 4.02
1794 1849 0.469705 TTGGTCTTGCTGCACCCATT 60.470 50.000 13.64 0.00 0.00 3.16
1804 1859 1.619654 TGCACCCATTATATGCAGGC 58.380 50.000 0.00 0.00 44.17 4.85
1866 1921 1.203063 AGTACACCTGTGCCTCTCTCA 60.203 52.381 0.00 0.00 0.00 3.27
1884 1939 6.918626 TCTCTCATGCTTAGATATACTGTGC 58.081 40.000 0.00 0.00 0.00 4.57
1916 1971 2.229792 GCTCCCTTGTGAACACATTCA 58.770 47.619 8.46 0.00 42.73 2.57
1982 2037 2.743928 CTGCCCACGAACAGGAGC 60.744 66.667 0.00 0.00 0.00 4.70
2098 2153 0.178924 AGGGGCTGCAACCTTGATTT 60.179 50.000 6.03 0.00 31.68 2.17
2206 2261 6.866480 TGGATTTGGCATAAGAAGATTGAAC 58.134 36.000 0.00 0.00 0.00 3.18
2337 2392 9.562408 TTGTAGTTATTGTTTGGTGTATCTTGA 57.438 29.630 0.00 0.00 0.00 3.02
2338 2393 9.214957 TGTAGTTATTGTTTGGTGTATCTTGAG 57.785 33.333 0.00 0.00 0.00 3.02
2339 2394 9.431887 GTAGTTATTGTTTGGTGTATCTTGAGA 57.568 33.333 0.00 0.00 0.00 3.27
2340 2395 8.918202 AGTTATTGTTTGGTGTATCTTGAGAA 57.082 30.769 0.00 0.00 0.00 2.87
2341 2396 9.520515 AGTTATTGTTTGGTGTATCTTGAGAAT 57.479 29.630 0.00 0.00 0.00 2.40
2480 2535 3.724257 GTGTTCTTTCTTAGCGTGCAAAC 59.276 43.478 0.00 0.00 0.00 2.93
2500 2555 2.821969 ACATGAGGCCAAAATCACTGTC 59.178 45.455 5.01 0.00 0.00 3.51
2503 2558 3.149196 TGAGGCCAAAATCACTGTCTTC 58.851 45.455 5.01 0.00 0.00 2.87
2510 2565 3.904136 AAATCACTGTCTTCGCCTTTG 57.096 42.857 0.00 0.00 0.00 2.77
2541 2596 5.652452 AGTTTAGCACTAATTGACCCCAATC 59.348 40.000 0.00 0.00 41.84 2.67
2548 2603 3.953712 AATTGACCCCAATCGGAAAAC 57.046 42.857 0.00 0.00 41.84 2.43
2604 2661 2.133648 CGTGGCGTATTGTTTACACG 57.866 50.000 0.00 0.00 44.20 4.49
2623 2680 1.271934 CGGAAAATGCCATGGTCAACA 59.728 47.619 14.67 2.53 0.00 3.33
2664 2721 1.217511 CTGGCTGATCTGCTGTCGT 59.782 57.895 21.99 0.00 0.00 4.34
2683 2740 2.354510 CGTGGCATGGTCAATACGATTT 59.645 45.455 0.00 0.00 33.78 2.17
2730 2788 3.605749 TTAGCAGGTCAGCGGGCAC 62.606 63.158 0.00 0.00 40.15 5.01
2770 2828 2.306847 GTTGACCATGGTGTTTCCTGT 58.693 47.619 25.52 0.00 37.07 4.00
2781 2839 7.309744 CCATGGTGTTTCCTGTGTAAACAATAT 60.310 37.037 2.57 0.00 45.56 1.28
2848 2906 7.969536 TGAAATCTTTTTCAGGTAGAGTCAG 57.030 36.000 0.00 0.00 44.81 3.51
3069 3127 7.553881 TTCTTCCTTTCAGTCTAAGTTGTTG 57.446 36.000 0.00 0.00 0.00 3.33
3107 3165 5.464389 GGTCCATGAAAATGCATATTTGAGC 59.536 40.000 0.00 3.45 36.65 4.26
3146 3204 2.892215 TCTGGTGCAGCAAAATTCATCA 59.108 40.909 20.60 0.00 0.00 3.07
3302 3360 2.367567 GCCCATTAGGAGTGGATACGAA 59.632 50.000 0.00 0.00 39.12 3.85
3412 3470 1.469703 CACTTTGGCTCATCGCATGAA 59.530 47.619 0.00 0.00 41.67 2.57
3441 3499 1.018226 GCAGCCAGCACTAGTCACAG 61.018 60.000 0.00 0.00 44.79 3.66
3816 3876 4.816385 ACATTGTCACGTTCTTGAAGACAT 59.184 37.500 0.00 0.00 38.80 3.06
3826 3886 5.295292 CGTTCTTGAAGACATGGATTATGCT 59.705 40.000 0.00 0.00 40.59 3.79
3888 3948 7.105241 ACTGAATCTAATTTTGGATCAAGGC 57.895 36.000 0.00 0.00 0.00 4.35
4033 4093 2.162319 TCGTGTAGTTCTGCATGCAA 57.838 45.000 22.88 10.06 0.00 4.08
4246 4310 6.237901 AGCAAGTTCCACTGTGATTATGTTA 58.762 36.000 9.86 0.00 0.00 2.41
4267 4331 8.958175 TGTTAAGTGCTTTTATGGAAATAACG 57.042 30.769 0.00 0.00 0.00 3.18
4311 4376 5.521544 GCGACCCAGTTAATTGTTTTGTTA 58.478 37.500 0.00 0.00 0.00 2.41
4356 4421 9.483062 GTTCTTTAGATGAAAATTGACGATGAG 57.517 33.333 0.00 0.00 0.00 2.90
4543 4608 6.377429 TGGAGAAGTTTCAGATATCTACACGT 59.623 38.462 4.54 0.91 0.00 4.49
4561 4626 6.056428 ACACGTTTCCAAGTTCTGAATTAC 57.944 37.500 0.00 0.00 0.00 1.89
4596 4661 9.087424 GCCTACTTGATTAAATGAAACAATTCC 57.913 33.333 0.00 0.00 34.49 3.01
4650 4715 5.872070 CACTTAATTGGAGAAGAGACAGGAC 59.128 44.000 0.00 0.00 0.00 3.85
4705 4770 9.628500 GGAAGTTAAGGAAAACACCATATATCT 57.372 33.333 0.00 0.00 32.29 1.98
4786 4851 2.437200 TTGCAGCCTATTTTGTGCAC 57.563 45.000 10.75 10.75 45.31 4.57
4963 5028 6.452757 TCAGATAATAATGATTCTGGGCCA 57.547 37.500 5.85 5.85 0.00 5.36
4964 5029 6.851318 TCAGATAATAATGATTCTGGGCCAA 58.149 36.000 8.04 0.00 0.00 4.52
5117 5182 2.256117 ACACCTGTGGTTCTTGCTAC 57.744 50.000 1.91 0.00 31.02 3.58
5192 5285 4.637276 TCAGCACGAGGAAAATTTAGTCA 58.363 39.130 0.00 0.00 0.00 3.41
5194 5287 3.437049 AGCACGAGGAAAATTTAGTCAGC 59.563 43.478 0.00 0.00 0.00 4.26
5508 5603 8.578151 TGTTAAGAGTCTCTCTAGAAAAAGGAC 58.422 37.037 1.96 0.00 40.28 3.85
5575 5670 3.565516 GCCATTTTCCAACTCGAAAGTC 58.434 45.455 0.00 0.00 33.48 3.01
5587 5682 1.610038 TCGAAAGTCTCCGCAACTGTA 59.390 47.619 0.00 0.00 0.00 2.74
5609 5704 3.397955 ACTGACCACCCCTCAAAATAGTT 59.602 43.478 0.00 0.00 0.00 2.24
5646 5741 0.462047 CCGCAACTGTCCCCATCTAC 60.462 60.000 0.00 0.00 0.00 2.59
5705 5800 4.655649 TCTTGGAGAGGCTATGATGCTTTA 59.344 41.667 0.00 0.00 0.00 1.85
5820 5965 7.680730 TCATCTTCCTAATAAGGTCCTTATGC 58.319 38.462 22.40 0.00 44.09 3.14
5839 5984 0.380024 CGCCATTGACACACAACACA 59.620 50.000 0.00 0.00 41.52 3.72
5915 6060 2.590821 CATTTGGATCTTGGCTAGGGG 58.409 52.381 0.00 0.00 0.00 4.79
5916 6061 1.979809 TTTGGATCTTGGCTAGGGGA 58.020 50.000 0.00 0.00 0.00 4.81
5917 6062 1.511613 TTGGATCTTGGCTAGGGGAG 58.488 55.000 0.00 0.00 0.00 4.30
5919 6064 1.052617 GGATCTTGGCTAGGGGAGAC 58.947 60.000 0.00 0.00 0.00 3.36
5931 6076 2.363361 GGAGACCGGGAGAGGGAA 59.637 66.667 6.32 0.00 35.02 3.97
5933 6078 0.908180 GGAGACCGGGAGAGGGAAAA 60.908 60.000 6.32 0.00 35.02 2.29
5935 6080 0.178900 AGACCGGGAGAGGGAAAAGT 60.179 55.000 6.32 0.00 35.02 2.66
5936 6081 0.036294 GACCGGGAGAGGGAAAAGTG 60.036 60.000 6.32 0.00 35.02 3.16
5937 6082 0.473117 ACCGGGAGAGGGAAAAGTGA 60.473 55.000 6.32 0.00 35.02 3.41
5938 6083 0.250513 CCGGGAGAGGGAAAAGTGAG 59.749 60.000 0.00 0.00 0.00 3.51
5939 6084 0.250513 CGGGAGAGGGAAAAGTGAGG 59.749 60.000 0.00 0.00 0.00 3.86
5940 6085 1.657804 GGGAGAGGGAAAAGTGAGGA 58.342 55.000 0.00 0.00 0.00 3.71
5942 6087 2.578480 GGGAGAGGGAAAAGTGAGGAAT 59.422 50.000 0.00 0.00 0.00 3.01
5943 6088 3.010696 GGGAGAGGGAAAAGTGAGGAATT 59.989 47.826 0.00 0.00 0.00 2.17
5944 6089 4.509302 GGGAGAGGGAAAAGTGAGGAATTT 60.509 45.833 0.00 0.00 0.00 1.82
5945 6090 5.080337 GGAGAGGGAAAAGTGAGGAATTTT 58.920 41.667 0.00 0.00 0.00 1.82
5946 6091 6.246163 GGAGAGGGAAAAGTGAGGAATTTTA 58.754 40.000 0.00 0.00 0.00 1.52
5947 6092 6.151312 GGAGAGGGAAAAGTGAGGAATTTTAC 59.849 42.308 0.00 0.00 0.00 2.01
5948 6093 6.010850 AGAGGGAAAAGTGAGGAATTTTACC 58.989 40.000 3.88 3.88 45.92 2.85
5949 6094 5.084519 AGGGAAAAGTGAGGAATTTTACCC 58.915 41.667 7.82 8.26 46.49 3.69
5950 6095 5.084519 GGGAAAAGTGAGGAATTTTACCCT 58.915 41.667 0.94 0.00 41.65 4.34
5952 6097 6.455647 GGAAAAGTGAGGAATTTTACCCTTG 58.544 40.000 0.00 0.00 31.84 3.61
5956 6101 5.464069 AGTGAGGAATTTTACCCTTGGTTT 58.536 37.500 0.00 0.00 37.09 3.27
5957 6102 5.538813 AGTGAGGAATTTTACCCTTGGTTTC 59.461 40.000 0.00 0.00 37.09 2.78
5958 6103 4.836175 TGAGGAATTTTACCCTTGGTTTCC 59.164 41.667 6.41 6.41 38.47 3.13
5959 6104 4.821940 AGGAATTTTACCCTTGGTTTCCA 58.178 39.130 13.98 0.00 39.82 3.53
5960 6105 5.220521 AGGAATTTTACCCTTGGTTTCCAA 58.779 37.500 13.98 1.25 39.82 3.53
5962 6107 6.013725 AGGAATTTTACCCTTGGTTTCCAATC 60.014 38.462 13.98 0.00 43.07 2.67
5963 6108 6.013725 GGAATTTTACCCTTGGTTTCCAATCT 60.014 38.462 8.80 0.00 43.07 2.40
5964 6109 7.387265 AATTTTACCCTTGGTTTCCAATCTT 57.613 32.000 1.58 0.00 43.07 2.40
5966 6111 6.816616 TTTACCCTTGGTTTCCAATCTTTT 57.183 33.333 1.58 0.00 43.07 2.27
5996 6141 7.669089 TCCAAAAAGAAAACAAATACTCCCT 57.331 32.000 0.00 0.00 0.00 4.20
5997 6142 7.722363 TCCAAAAAGAAAACAAATACTCCCTC 58.278 34.615 0.00 0.00 0.00 4.30
5999 6144 5.959618 AAAGAAAACAAATACTCCCTCGG 57.040 39.130 0.00 0.00 0.00 4.63
6001 6146 4.576879 AGAAAACAAATACTCCCTCGGTC 58.423 43.478 0.00 0.00 0.00 4.79
6002 6147 3.345508 AAACAAATACTCCCTCGGTCC 57.654 47.619 0.00 0.00 0.00 4.46
6003 6148 1.201424 ACAAATACTCCCTCGGTCCC 58.799 55.000 0.00 0.00 0.00 4.46
6004 6149 1.200519 CAAATACTCCCTCGGTCCCA 58.799 55.000 0.00 0.00 0.00 4.37
6007 6152 3.339713 AATACTCCCTCGGTCCCATAA 57.660 47.619 0.00 0.00 0.00 1.90
6008 6153 3.562108 ATACTCCCTCGGTCCCATAAT 57.438 47.619 0.00 0.00 0.00 1.28
6010 6155 3.562108 ACTCCCTCGGTCCCATAATAT 57.438 47.619 0.00 0.00 0.00 1.28
6011 6156 4.687262 ACTCCCTCGGTCCCATAATATA 57.313 45.455 0.00 0.00 0.00 0.86
6012 6157 5.019657 ACTCCCTCGGTCCCATAATATAA 57.980 43.478 0.00 0.00 0.00 0.98
6013 6158 5.024118 ACTCCCTCGGTCCCATAATATAAG 58.976 45.833 0.00 0.00 0.00 1.73
6014 6159 5.222484 ACTCCCTCGGTCCCATAATATAAGA 60.222 44.000 0.00 0.00 0.00 2.10
6015 6160 5.269991 TCCCTCGGTCCCATAATATAAGAG 58.730 45.833 0.00 0.00 0.00 2.85
6016 6161 5.024118 CCCTCGGTCCCATAATATAAGAGT 58.976 45.833 0.00 0.00 0.00 3.24
6017 6162 5.105310 CCCTCGGTCCCATAATATAAGAGTG 60.105 48.000 0.00 0.00 0.00 3.51
6018 6163 5.480772 CCTCGGTCCCATAATATAAGAGTGT 59.519 44.000 0.00 0.00 0.00 3.55
6023 6168 8.342634 CGGTCCCATAATATAAGAGTGTTTTTG 58.657 37.037 0.00 0.00 0.00 2.44
6024 6169 9.403583 GGTCCCATAATATAAGAGTGTTTTTGA 57.596 33.333 0.00 0.00 0.00 2.69
6026 6171 9.967451 TCCCATAATATAAGAGTGTTTTTGACA 57.033 29.630 0.00 0.00 35.42 3.58
6065 6210 7.687941 AAAACGCTCTTATATTATGGGATGG 57.312 36.000 0.00 0.00 0.00 3.51
6066 6211 6.620877 AACGCTCTTATATTATGGGATGGA 57.379 37.500 0.00 0.00 0.00 3.41
6067 6212 6.227298 ACGCTCTTATATTATGGGATGGAG 57.773 41.667 0.00 0.00 0.00 3.86
6069 6214 5.453903 CGCTCTTATATTATGGGATGGAGGG 60.454 48.000 0.00 0.00 0.00 4.30
6070 6215 5.667626 GCTCTTATATTATGGGATGGAGGGA 59.332 44.000 0.00 0.00 0.00 4.20
6071 6216 6.183361 GCTCTTATATTATGGGATGGAGGGAG 60.183 46.154 0.00 0.00 0.00 4.30
6073 6218 7.961940 TCTTATATTATGGGATGGAGGGAGTA 58.038 38.462 0.00 0.00 0.00 2.59
6074 6219 7.844779 TCTTATATTATGGGATGGAGGGAGTAC 59.155 40.741 0.00 0.00 0.00 2.73
6075 6220 3.717507 TTATGGGATGGAGGGAGTACA 57.282 47.619 0.00 0.00 0.00 2.90
6077 6222 1.879575 TGGGATGGAGGGAGTACAAG 58.120 55.000 0.00 0.00 0.00 3.16
6078 6223 1.132500 GGGATGGAGGGAGTACAAGG 58.868 60.000 0.00 0.00 0.00 3.61
6080 6225 2.359994 GGGATGGAGGGAGTACAAGGTA 60.360 54.545 0.00 0.00 0.00 3.08
6081 6226 2.966516 GGATGGAGGGAGTACAAGGTAG 59.033 54.545 0.00 0.00 0.00 3.18
6082 6227 3.373877 GGATGGAGGGAGTACAAGGTAGA 60.374 52.174 0.00 0.00 0.00 2.59
6084 6229 2.924302 TGGAGGGAGTACAAGGTAGAGA 59.076 50.000 0.00 0.00 0.00 3.10
6085 6230 3.053544 TGGAGGGAGTACAAGGTAGAGAG 60.054 52.174 0.00 0.00 0.00 3.20
6086 6231 2.953648 GAGGGAGTACAAGGTAGAGAGC 59.046 54.545 0.00 0.00 0.00 4.09
6087 6232 2.033372 GGGAGTACAAGGTAGAGAGCC 58.967 57.143 0.00 0.00 0.00 4.70
6088 6233 2.623502 GGGAGTACAAGGTAGAGAGCCA 60.624 54.545 0.00 0.00 0.00 4.75
6089 6234 3.097614 GGAGTACAAGGTAGAGAGCCAA 58.902 50.000 0.00 0.00 0.00 4.52
6090 6235 3.131400 GGAGTACAAGGTAGAGAGCCAAG 59.869 52.174 0.00 0.00 0.00 3.61
6091 6236 2.498078 AGTACAAGGTAGAGAGCCAAGC 59.502 50.000 0.00 0.00 0.00 4.01
6093 6238 1.912043 ACAAGGTAGAGAGCCAAGCAT 59.088 47.619 0.00 0.00 0.00 3.79
6094 6239 3.107601 ACAAGGTAGAGAGCCAAGCATA 58.892 45.455 0.00 0.00 0.00 3.14
6095 6240 3.118592 ACAAGGTAGAGAGCCAAGCATAC 60.119 47.826 0.00 0.00 0.00 2.39
6100 6316 4.081917 GGTAGAGAGCCAAGCATACCTATC 60.082 50.000 0.00 0.00 31.87 2.08
6102 6318 3.831911 AGAGAGCCAAGCATACCTATCTC 59.168 47.826 0.00 0.00 33.70 2.75
6103 6319 3.576118 GAGAGCCAAGCATACCTATCTCA 59.424 47.826 0.00 0.00 33.71 3.27
6107 6323 6.047511 AGCCAAGCATACCTATCTCAATAG 57.952 41.667 0.00 0.00 35.56 1.73
6137 6353 2.363683 GCTCATGCTTGCCTTACTCTT 58.636 47.619 0.00 0.00 36.03 2.85
6138 6354 2.097142 GCTCATGCTTGCCTTACTCTTG 59.903 50.000 0.00 0.00 36.03 3.02
6139 6355 3.341823 CTCATGCTTGCCTTACTCTTGT 58.658 45.455 0.00 0.00 0.00 3.16
6142 6358 2.221169 TGCTTGCCTTACTCTTGTGTG 58.779 47.619 0.00 0.00 0.00 3.82
6145 6361 3.206150 CTTGCCTTACTCTTGTGTGTGT 58.794 45.455 0.00 0.00 0.00 3.72
6220 6436 4.144297 TGGCAAAGAGACTTAAAGCATGT 58.856 39.130 0.00 0.00 0.00 3.21
6255 6471 0.813821 GGCTGCTGTTTCAGAATCCC 59.186 55.000 0.00 0.00 36.19 3.85
6261 6477 0.984230 TGTTTCAGAATCCCGGAGCT 59.016 50.000 0.73 0.00 0.00 4.09
6393 6609 7.649306 CACAAGAGAGGTAATTTTGTTTTCCTG 59.351 37.037 0.00 0.00 30.15 3.86
6412 6630 4.156664 CTGAAACAGCTCATCAGGTTTG 57.843 45.455 10.66 0.00 37.51 2.93
6496 6714 0.461339 GAGGTAATCCGCCGAAAGCA 60.461 55.000 0.00 0.00 44.04 3.91
6499 6717 1.583054 GTAATCCGCCGAAAGCAGAT 58.417 50.000 0.00 0.00 40.47 2.90
6530 6748 1.890625 GCATGGCCATTTCTGCACCA 61.891 55.000 21.47 0.00 34.77 4.17
6535 6753 1.337167 GGCCATTTCTGCACCAAGTTC 60.337 52.381 0.00 0.00 0.00 3.01
6549 6767 3.283751 CCAAGTTCCCAAATGGCGTATA 58.716 45.455 0.00 0.00 0.00 1.47
6570 6788 7.061210 CGTATAGCGGATGAAAAGAGAACATAG 59.939 40.741 0.00 0.00 36.85 2.23
6571 6789 5.091261 AGCGGATGAAAAGAGAACATAGT 57.909 39.130 0.00 0.00 0.00 2.12
6572 6790 6.222038 AGCGGATGAAAAGAGAACATAGTA 57.778 37.500 0.00 0.00 0.00 1.82
6635 6864 1.597854 CCGTGTCCAGAGCAAGCAA 60.598 57.895 0.00 0.00 0.00 3.91
6639 6868 1.678101 GTGTCCAGAGCAAGCAACTTT 59.322 47.619 0.00 0.00 0.00 2.66
6775 7009 4.754372 TGACAGCATCATCACAAACTTC 57.246 40.909 0.00 0.00 29.99 3.01
6892 7126 2.993853 CCCTTGTCAGCCTCCTCC 59.006 66.667 0.00 0.00 0.00 4.30
6910 7144 1.597989 CTCTGCTCCTGCTGCTTCT 59.402 57.895 0.00 0.00 40.48 2.85
6961 7195 0.616111 AGATGTTCTCCAGGAGCCGT 60.616 55.000 12.26 6.01 0.00 5.68
7013 7247 4.129737 CCTCCGGCGTGTCGTCAT 62.130 66.667 6.01 0.00 0.00 3.06
7093 7327 0.034767 CCAGCTTCTTCATCCAGCCA 60.035 55.000 0.00 0.00 33.73 4.75
7140 7374 1.021390 CGCAGCGACTTCTCCCAAAT 61.021 55.000 9.98 0.00 0.00 2.32
7320 7554 3.695606 GGTCTCGTCAGCCTGCCA 61.696 66.667 0.00 0.00 0.00 4.92
7331 7565 2.041265 CCTGCCAGTAGTCCCCCT 59.959 66.667 0.00 0.00 0.00 4.79
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
438 478 0.103208 GCGCTAGTACTGCTCCACAT 59.897 55.000 5.39 0.00 0.00 3.21
454 494 0.880278 TGTTGTTCTGAGTCAGGCGC 60.880 55.000 19.99 0.00 31.51 6.53
461 501 5.930135 ACTCCTAATGTTGTTGTTCTGAGT 58.070 37.500 0.00 0.00 0.00 3.41
584 626 0.030235 GGCTCGCGTTGAAAAGGTTT 59.970 50.000 5.77 0.00 33.49 3.27
600 642 2.606378 CCGTACTATTAAGAGGGGGCT 58.394 52.381 1.59 0.00 0.00 5.19
601 643 1.001746 GCCGTACTATTAAGAGGGGGC 59.998 57.143 11.02 11.02 0.00 5.80
626 668 3.663995 TTCGGTGGATTTGAGTCGTAA 57.336 42.857 0.00 0.00 0.00 3.18
656 698 1.439679 ATTGAAGACGGCGTTTCTCC 58.560 50.000 24.41 10.87 0.00 3.71
739 781 3.853831 TGCTTTTACGGACTCATCGTA 57.146 42.857 0.00 0.00 41.38 3.43
745 787 4.391830 TGATGACAATGCTTTTACGGACTC 59.608 41.667 0.00 0.00 0.00 3.36
752 794 6.587206 TGGTGATTGATGACAATGCTTTTA 57.413 33.333 0.00 0.00 45.30 1.52
787 832 6.539173 TCCACTGTGTAAGGTCACATTATTT 58.461 36.000 7.08 0.00 45.38 1.40
788 833 6.121776 TCCACTGTGTAAGGTCACATTATT 57.878 37.500 7.08 0.00 45.38 1.40
842 888 5.048294 GGAGGATTTTACCTTCGCTTCAAAA 60.048 40.000 0.00 0.00 40.73 2.44
867 913 1.094785 CAAATGATCCCACGGACCAC 58.905 55.000 0.00 0.00 32.98 4.16
868 914 0.695924 ACAAATGATCCCACGGACCA 59.304 50.000 0.00 0.00 32.98 4.02
869 915 2.702592 TACAAATGATCCCACGGACC 57.297 50.000 0.00 0.00 32.98 4.46
870 916 3.139077 GGATACAAATGATCCCACGGAC 58.861 50.000 0.00 0.00 37.49 4.79
883 929 2.777692 GGACAGGGATGAGGGATACAAA 59.222 50.000 0.00 0.00 39.74 2.83
890 936 1.690219 CGAAGGGACAGGGATGAGGG 61.690 65.000 0.00 0.00 0.00 4.30
892 938 1.144936 GCGAAGGGACAGGGATGAG 59.855 63.158 0.00 0.00 0.00 2.90
895 941 2.427245 CGAGCGAAGGGACAGGGAT 61.427 63.158 0.00 0.00 0.00 3.85
1178 1227 8.788325 ATTTTGAAATAGTTTAGAGCTACGGT 57.212 30.769 0.00 0.00 0.00 4.83
1243 1292 2.288025 GGTTCCCAGCGGTACCAGA 61.288 63.158 13.54 0.00 46.43 3.86
1248 1297 3.766691 GCGAGGTTCCCAGCGGTA 61.767 66.667 0.00 0.00 0.00 4.02
1275 1327 4.202245 ACTCAAGTAATTTAGAGCCGCA 57.798 40.909 0.00 0.00 0.00 5.69
1294 1346 6.371548 ACAACAACGAGCATGTCATTAATACT 59.628 34.615 0.00 0.00 0.00 2.12
1295 1347 6.542852 ACAACAACGAGCATGTCATTAATAC 58.457 36.000 0.00 0.00 0.00 1.89
1296 1348 6.593770 AGACAACAACGAGCATGTCATTAATA 59.406 34.615 14.83 0.00 43.53 0.98
1303 1355 3.926527 TCATAGACAACAACGAGCATGTC 59.073 43.478 0.00 0.00 41.88 3.06
1316 1368 9.460019 TGATTCCACAAACATAATCATAGACAA 57.540 29.630 0.00 0.00 0.00 3.18
1322 1374 5.069516 GGCCTGATTCCACAAACATAATCAT 59.930 40.000 0.00 0.00 0.00 2.45
1334 1386 0.106819 AGCATGAGGCCTGATTCCAC 60.107 55.000 12.00 0.00 46.50 4.02
1395 1447 4.202141 CCAACCGCACAATCATAATTCCAT 60.202 41.667 0.00 0.00 0.00 3.41
1403 1457 1.392589 GATCCCAACCGCACAATCAT 58.607 50.000 0.00 0.00 0.00 2.45
1424 1478 1.348250 CGCCAAACATCATCGTCCG 59.652 57.895 0.00 0.00 0.00 4.79
1445 1499 4.603231 TGTGTTGACCAGAAAACGTAAC 57.397 40.909 0.00 0.00 0.00 2.50
1449 1503 5.418310 AGTAATGTGTTGACCAGAAAACG 57.582 39.130 0.00 0.00 0.00 3.60
1469 1523 7.857456 TGAAAACATATACACCATGGAGTAGT 58.143 34.615 23.71 15.10 0.00 2.73
1474 1528 9.253832 AGAAAATGAAAACATATACACCATGGA 57.746 29.630 21.47 0.00 0.00 3.41
1586 1640 7.665559 AGAGCACCATTTGAACAGAGTAATTAA 59.334 33.333 0.00 0.00 0.00 1.40
1632 1687 0.405198 ACTCATGGTGGGATGTGCAA 59.595 50.000 0.00 0.00 0.00 4.08
1670 1725 7.399191 TGGAACTGTACTAACACTAGAATGGAT 59.601 37.037 0.00 0.00 0.00 3.41
1702 1757 8.874156 AGTGAATAACATCCAGATATCAAGCTA 58.126 33.333 5.32 0.00 0.00 3.32
1737 1792 1.787012 CTTGCAATCAAGTTGTGCCC 58.213 50.000 14.01 0.00 43.55 5.36
1780 1835 2.624364 TGCATATAATGGGTGCAGCAAG 59.376 45.455 19.06 0.00 43.30 4.01
1794 1849 3.535280 TGAACAGTTCGCCTGCATATA 57.465 42.857 8.80 0.00 45.68 0.86
1804 1859 2.966309 GCCGGCCTTGAACAGTTCG 61.966 63.158 18.11 0.00 0.00 3.95
1866 1921 8.424918 AGTTTACAGCACAGTATATCTAAGCAT 58.575 33.333 0.00 0.00 0.00 3.79
1884 1939 5.245531 TCACAAGGGAGCATAAGTTTACAG 58.754 41.667 0.00 0.00 0.00 2.74
1916 1971 6.911308 AGGGCAGAACATACATAACCTAAAT 58.089 36.000 0.00 0.00 0.00 1.40
1982 2037 0.315251 TCACTGACAGGAGAAGCGTG 59.685 55.000 7.51 0.00 38.32 5.34
2341 2396 9.996554 TCTTCTGACACATTAAAGTTCTCATTA 57.003 29.630 0.00 0.00 0.00 1.90
2342 2397 8.908786 TCTTCTGACACATTAAAGTTCTCATT 57.091 30.769 0.00 0.00 0.00 2.57
2343 2398 8.908786 TTCTTCTGACACATTAAAGTTCTCAT 57.091 30.769 0.00 0.00 0.00 2.90
2480 2535 3.087031 AGACAGTGATTTTGGCCTCATG 58.913 45.455 3.32 2.86 0.00 3.07
2500 2555 5.795441 GCTAAACTTCATTACAAAGGCGAAG 59.205 40.000 0.00 0.00 39.17 3.79
2503 2558 4.851558 GTGCTAAACTTCATTACAAAGGCG 59.148 41.667 0.00 0.00 0.00 5.52
2510 2565 8.182227 GGGTCAATTAGTGCTAAACTTCATTAC 58.818 37.037 0.00 0.00 40.56 1.89
2541 2596 3.181520 GGTCAGATCGTGAATGTTTTCCG 60.182 47.826 0.00 0.00 36.74 4.30
2548 2603 4.572389 CCTAAAAGGGTCAGATCGTGAATG 59.428 45.833 0.00 0.00 36.74 2.67
2604 2661 2.932187 GCTGTTGACCATGGCATTTTCC 60.932 50.000 13.04 0.00 0.00 3.13
2664 2721 3.351740 ACAAATCGTATTGACCATGCCA 58.648 40.909 9.35 0.00 34.38 4.92
2683 2740 1.601903 GTCAAACGCCAAGACATGACA 59.398 47.619 0.00 0.00 37.65 3.58
2746 2804 0.753479 AAACACCATGGTCAACGGCA 60.753 50.000 16.53 0.00 0.00 5.69
2747 2805 0.039527 GAAACACCATGGTCAACGGC 60.040 55.000 16.53 0.00 0.00 5.68
2770 2828 5.060506 CCGTATCAGGGCATATTGTTTACA 58.939 41.667 0.00 0.00 0.00 2.41
2781 2839 2.285069 ACCCACCGTATCAGGGCA 60.285 61.111 0.00 0.00 46.88 5.36
3030 3088 9.231297 TGAAAGGAAGAATTGTTTACCAGATAG 57.769 33.333 0.00 0.00 0.00 2.08
3069 3127 4.843728 TCATGGACCTGGTAGATTCAAAC 58.156 43.478 0.00 0.00 0.00 2.93
3107 3165 4.142315 ACCAGAAAGCAATGATGGAAATCG 60.142 41.667 0.00 0.00 34.99 3.34
3405 3463 0.522626 TGCTGTTCCACATTCATGCG 59.477 50.000 0.00 0.00 0.00 4.73
3412 3470 1.975407 GCTGGCTGCTGTTCCACAT 60.975 57.895 9.31 0.00 38.95 3.21
3441 3499 6.013842 ACTGCTTCCTGTACTTTATTTTGC 57.986 37.500 0.00 0.00 0.00 3.68
3537 3595 8.904834 TCAAGCTCGTTATAAATCTCTAAGAGT 58.095 33.333 0.00 0.00 0.00 3.24
3705 3763 5.667539 TGACTAGAAAGGAAGTGATCAGG 57.332 43.478 0.00 0.00 0.00 3.86
3816 3876 9.288576 CATAGTCATTTCCTAAAGCATAATCCA 57.711 33.333 0.00 0.00 0.00 3.41
3888 3948 4.637483 AAATGACGTTAATGCCATCCAG 57.363 40.909 0.00 0.00 0.00 3.86
4033 4093 4.942761 ACACATGATTGTCCTTTTGCTT 57.057 36.364 0.00 0.00 32.34 3.91
4246 4310 8.880878 AAAACGTTATTTCCATAAAAGCACTT 57.119 26.923 0.00 0.00 0.00 3.16
4311 4376 8.603242 AAAGAACTGTGTCGTTCAAACTATAT 57.397 30.769 6.47 0.00 44.37 0.86
4318 4383 6.277605 TCATCTAAAGAACTGTGTCGTTCAA 58.722 36.000 6.47 0.00 44.37 2.69
4543 4608 7.996644 AGTAGTTGGTAATTCAGAACTTGGAAA 59.003 33.333 0.00 0.00 31.25 3.13
4561 4626 7.552687 TCATTTAATCAAGTAGGCAGTAGTTGG 59.447 37.037 11.16 0.00 41.01 3.77
4650 4715 4.021456 TCCACTATATAGATTGCACCACGG 60.021 45.833 16.79 1.77 0.00 4.94
4706 4771 9.822727 TCCATCACTCCACTGTATAAGATATTA 57.177 33.333 0.00 0.00 0.00 0.98
4707 4772 8.727100 TCCATCACTCCACTGTATAAGATATT 57.273 34.615 0.00 0.00 0.00 1.28
4708 4773 8.727100 TTCCATCACTCCACTGTATAAGATAT 57.273 34.615 0.00 0.00 0.00 1.63
4709 4774 7.255977 GCTTCCATCACTCCACTGTATAAGATA 60.256 40.741 0.00 0.00 0.00 1.98
4710 4775 6.463614 GCTTCCATCACTCCACTGTATAAGAT 60.464 42.308 0.00 0.00 0.00 2.40
4711 4776 5.163405 GCTTCCATCACTCCACTGTATAAGA 60.163 44.000 0.00 0.00 0.00 2.10
4712 4777 5.053145 GCTTCCATCACTCCACTGTATAAG 58.947 45.833 0.00 0.00 0.00 1.73
4767 4832 1.685517 TGTGCACAAAATAGGCTGCAA 59.314 42.857 19.28 0.00 41.17 4.08
4945 5010 9.246670 CTCATATTTGGCCCAGAATCATTATTA 57.753 33.333 0.00 0.00 0.00 0.98
4952 5017 2.560105 GCCTCATATTTGGCCCAGAATC 59.440 50.000 0.00 0.00 43.11 2.52
4963 5028 7.013655 CACTGGTAATAGCAAAGCCTCATATTT 59.986 37.037 0.00 0.00 0.00 1.40
4964 5029 6.488006 CACTGGTAATAGCAAAGCCTCATATT 59.512 38.462 0.00 0.00 0.00 1.28
5102 5167 3.380004 TGGTTTTGTAGCAAGAACCACAG 59.620 43.478 16.72 0.00 44.72 3.66
5117 5182 6.017400 AGAAGTGCAACAGATATGGTTTTG 57.983 37.500 0.00 0.00 41.43 2.44
5192 5285 3.937706 CTCCATTTCAAATCAGACTCGCT 59.062 43.478 0.00 0.00 0.00 4.93
5194 5287 5.180117 ACAACTCCATTTCAAATCAGACTCG 59.820 40.000 0.00 0.00 0.00 4.18
5416 5509 9.010029 ACCATTATACGGGAAATTAGCAAATAG 57.990 33.333 0.00 0.00 0.00 1.73
5575 5670 0.317160 TGGTCAGTACAGTTGCGGAG 59.683 55.000 0.00 0.00 0.00 4.63
5587 5682 2.986728 ACTATTTTGAGGGGTGGTCAGT 59.013 45.455 0.00 0.00 0.00 3.41
5609 5704 3.004629 TGCGGACACTTTCGAGTTAGTTA 59.995 43.478 0.00 0.00 0.00 2.24
5623 5718 2.668550 GGGGACAGTTGCGGACAC 60.669 66.667 0.00 0.00 0.00 3.67
5657 5752 0.884704 ACCACGCCATCGATTATGCC 60.885 55.000 0.00 0.00 39.41 4.40
5796 5896 6.591834 CGCATAAGGACCTTATTAGGAAGATG 59.408 42.308 22.00 12.46 45.05 2.90
5807 5907 2.171659 TCAATGGCGCATAAGGACCTTA 59.828 45.455 16.35 16.35 0.00 2.69
5810 5910 0.663153 GTCAATGGCGCATAAGGACC 59.337 55.000 10.83 0.00 0.00 4.46
5820 5965 0.380024 TGTGTTGTGTGTCAATGGCG 59.620 50.000 0.00 0.00 38.38 5.69
5839 5984 8.301720 CAGCATTGCCTAAATGTTATATCATGT 58.698 33.333 4.70 0.00 46.37 3.21
5915 6060 0.537653 CTTTTCCCTCTCCCGGTCTC 59.462 60.000 0.00 0.00 0.00 3.36
5916 6061 0.178900 ACTTTTCCCTCTCCCGGTCT 60.179 55.000 0.00 0.00 0.00 3.85
5917 6062 0.036294 CACTTTTCCCTCTCCCGGTC 60.036 60.000 0.00 0.00 0.00 4.79
5919 6064 0.250513 CTCACTTTTCCCTCTCCCGG 59.749 60.000 0.00 0.00 0.00 5.73
5920 6065 0.250513 CCTCACTTTTCCCTCTCCCG 59.749 60.000 0.00 0.00 0.00 5.14
5921 6066 1.657804 TCCTCACTTTTCCCTCTCCC 58.342 55.000 0.00 0.00 0.00 4.30
5923 6068 6.151312 GGTAAAATTCCTCACTTTTCCCTCTC 59.849 42.308 0.00 0.00 0.00 3.20
5925 6070 5.185249 GGGTAAAATTCCTCACTTTTCCCTC 59.815 44.000 0.00 0.00 33.53 4.30
5927 6072 5.084519 AGGGTAAAATTCCTCACTTTTCCC 58.915 41.667 0.00 0.00 34.89 3.97
5928 6073 6.455647 CAAGGGTAAAATTCCTCACTTTTCC 58.544 40.000 0.00 0.00 32.02 3.13
5929 6074 6.041637 ACCAAGGGTAAAATTCCTCACTTTTC 59.958 38.462 0.00 0.00 32.11 2.29
5931 6076 5.464069 ACCAAGGGTAAAATTCCTCACTTT 58.536 37.500 0.00 0.00 32.11 2.66
5933 6078 4.741928 ACCAAGGGTAAAATTCCTCACT 57.258 40.909 0.00 0.00 32.11 3.41
5935 6080 4.836175 GGAAACCAAGGGTAAAATTCCTCA 59.164 41.667 8.62 0.00 36.48 3.86
5936 6081 4.836175 TGGAAACCAAGGGTAAAATTCCTC 59.164 41.667 14.44 0.00 38.79 3.71
5937 6082 4.821940 TGGAAACCAAGGGTAAAATTCCT 58.178 39.130 14.44 0.00 38.79 3.36
5938 6083 5.554437 TTGGAAACCAAGGGTAAAATTCC 57.446 39.130 8.86 8.86 38.75 3.01
5969 6114 9.168451 GGGAGTATTTGTTTTCTTTTTGGAAAA 57.832 29.630 0.00 0.00 41.17 2.29
5970 6115 8.544622 AGGGAGTATTTGTTTTCTTTTTGGAAA 58.455 29.630 0.00 0.00 33.98 3.13
5972 6117 7.469456 CGAGGGAGTATTTGTTTTCTTTTTGGA 60.469 37.037 0.00 0.00 0.00 3.53
5974 6119 6.640907 CCGAGGGAGTATTTGTTTTCTTTTTG 59.359 38.462 0.00 0.00 0.00 2.44
5976 6121 5.831525 ACCGAGGGAGTATTTGTTTTCTTTT 59.168 36.000 0.00 0.00 0.00 2.27
5977 6122 5.382616 ACCGAGGGAGTATTTGTTTTCTTT 58.617 37.500 0.00 0.00 0.00 2.52
5978 6123 4.981812 ACCGAGGGAGTATTTGTTTTCTT 58.018 39.130 0.00 0.00 0.00 2.52
5979 6124 4.565028 GGACCGAGGGAGTATTTGTTTTCT 60.565 45.833 0.00 0.00 0.00 2.52
5980 6125 3.688185 GGACCGAGGGAGTATTTGTTTTC 59.312 47.826 0.00 0.00 0.00 2.29
5981 6126 3.560668 GGGACCGAGGGAGTATTTGTTTT 60.561 47.826 0.00 0.00 0.00 2.43
5982 6127 2.026542 GGGACCGAGGGAGTATTTGTTT 60.027 50.000 0.00 0.00 0.00 2.83
5983 6128 1.558294 GGGACCGAGGGAGTATTTGTT 59.442 52.381 0.00 0.00 0.00 2.83
5985 6130 1.200519 TGGGACCGAGGGAGTATTTG 58.799 55.000 0.00 0.00 0.00 2.32
5986 6131 2.191981 ATGGGACCGAGGGAGTATTT 57.808 50.000 0.00 0.00 0.00 1.40
5987 6132 3.339713 TTATGGGACCGAGGGAGTATT 57.660 47.619 0.00 0.00 0.00 1.89
5989 6134 4.687262 ATATTATGGGACCGAGGGAGTA 57.313 45.455 0.00 0.00 0.00 2.59
5991 6136 5.269991 TCTTATATTATGGGACCGAGGGAG 58.730 45.833 0.00 0.00 0.00 4.30
5992 6137 5.222484 ACTCTTATATTATGGGACCGAGGGA 60.222 44.000 0.00 0.00 0.00 4.20
5993 6138 5.024118 ACTCTTATATTATGGGACCGAGGG 58.976 45.833 0.00 0.00 0.00 4.30
5994 6139 5.480772 ACACTCTTATATTATGGGACCGAGG 59.519 44.000 0.00 0.00 0.00 4.63
5996 6141 6.989155 AACACTCTTATATTATGGGACCGA 57.011 37.500 0.00 0.00 0.00 4.69
5997 6142 8.342634 CAAAAACACTCTTATATTATGGGACCG 58.657 37.037 0.00 0.00 0.00 4.79
6040 6185 7.942341 TCCATCCCATAATATAAGAGCGTTTTT 59.058 33.333 0.00 0.00 0.00 1.94
6042 6187 7.016153 TCCATCCCATAATATAAGAGCGTTT 57.984 36.000 0.00 0.00 0.00 3.60
6044 6189 5.129485 CCTCCATCCCATAATATAAGAGCGT 59.871 44.000 0.00 0.00 0.00 5.07
6045 6190 5.453903 CCCTCCATCCCATAATATAAGAGCG 60.454 48.000 0.00 0.00 0.00 5.03
6046 6191 5.667626 TCCCTCCATCCCATAATATAAGAGC 59.332 44.000 0.00 0.00 0.00 4.09
6047 6192 6.905776 ACTCCCTCCATCCCATAATATAAGAG 59.094 42.308 0.00 0.00 0.00 2.85
6048 6193 6.826727 ACTCCCTCCATCCCATAATATAAGA 58.173 40.000 0.00 0.00 0.00 2.10
6050 6195 7.492552 TGTACTCCCTCCATCCCATAATATAA 58.507 38.462 0.00 0.00 0.00 0.98
6051 6196 7.063801 TGTACTCCCTCCATCCCATAATATA 57.936 40.000 0.00 0.00 0.00 0.86
6053 6198 5.363124 TGTACTCCCTCCATCCCATAATA 57.637 43.478 0.00 0.00 0.00 0.98
6054 6199 4.228237 TGTACTCCCTCCATCCCATAAT 57.772 45.455 0.00 0.00 0.00 1.28
6055 6200 3.717507 TGTACTCCCTCCATCCCATAA 57.282 47.619 0.00 0.00 0.00 1.90
6056 6201 3.587498 CTTGTACTCCCTCCATCCCATA 58.413 50.000 0.00 0.00 0.00 2.74
6057 6202 2.412591 CTTGTACTCCCTCCATCCCAT 58.587 52.381 0.00 0.00 0.00 4.00
6058 6203 1.625228 CCTTGTACTCCCTCCATCCCA 60.625 57.143 0.00 0.00 0.00 4.37
6059 6204 1.132500 CCTTGTACTCCCTCCATCCC 58.868 60.000 0.00 0.00 0.00 3.85
6060 6205 1.880941 ACCTTGTACTCCCTCCATCC 58.119 55.000 0.00 0.00 0.00 3.51
6062 6207 3.532232 TCTCTACCTTGTACTCCCTCCAT 59.468 47.826 0.00 0.00 0.00 3.41
6063 6208 2.924302 TCTCTACCTTGTACTCCCTCCA 59.076 50.000 0.00 0.00 0.00 3.86
6064 6209 3.558033 CTCTCTACCTTGTACTCCCTCC 58.442 54.545 0.00 0.00 0.00 4.30
6065 6210 2.953648 GCTCTCTACCTTGTACTCCCTC 59.046 54.545 0.00 0.00 0.00 4.30
6066 6211 2.358405 GGCTCTCTACCTTGTACTCCCT 60.358 54.545 0.00 0.00 0.00 4.20
6067 6212 2.033372 GGCTCTCTACCTTGTACTCCC 58.967 57.143 0.00 0.00 0.00 4.30
6069 6214 3.429684 GCTTGGCTCTCTACCTTGTACTC 60.430 52.174 0.00 0.00 0.00 2.59
6070 6215 2.498078 GCTTGGCTCTCTACCTTGTACT 59.502 50.000 0.00 0.00 0.00 2.73
6071 6216 2.233922 TGCTTGGCTCTCTACCTTGTAC 59.766 50.000 0.00 0.00 0.00 2.90
6073 6218 1.352083 TGCTTGGCTCTCTACCTTGT 58.648 50.000 0.00 0.00 0.00 3.16
6074 6219 2.706339 ATGCTTGGCTCTCTACCTTG 57.294 50.000 0.00 0.00 0.00 3.61
6075 6220 2.436173 GGTATGCTTGGCTCTCTACCTT 59.564 50.000 0.00 0.00 0.00 3.50
6077 6222 2.043227 AGGTATGCTTGGCTCTCTACC 58.957 52.381 0.00 0.00 0.00 3.18
6078 6223 4.770010 AGATAGGTATGCTTGGCTCTCTAC 59.230 45.833 0.00 0.00 0.00 2.59
6080 6225 3.831911 GAGATAGGTATGCTTGGCTCTCT 59.168 47.826 0.00 0.00 0.00 3.10
6081 6226 3.576118 TGAGATAGGTATGCTTGGCTCTC 59.424 47.826 0.00 0.00 0.00 3.20
6082 6227 3.581101 TGAGATAGGTATGCTTGGCTCT 58.419 45.455 0.00 0.00 0.00 4.09
6084 6229 4.989875 ATTGAGATAGGTATGCTTGGCT 57.010 40.909 0.00 0.00 0.00 4.75
6085 6230 6.042638 TCTATTGAGATAGGTATGCTTGGC 57.957 41.667 0.00 0.00 36.65 4.52
6086 6231 8.316946 TGAATCTATTGAGATAGGTATGCTTGG 58.683 37.037 0.00 0.00 41.87 3.61
6087 6232 9.887629 ATGAATCTATTGAGATAGGTATGCTTG 57.112 33.333 0.00 0.00 41.87 4.01
6120 6336 2.816087 ACACAAGAGTAAGGCAAGCATG 59.184 45.455 0.00 0.00 0.00 4.06
6129 6345 3.242413 GCACACACACACACAAGAGTAAG 60.242 47.826 0.00 0.00 0.00 2.34
6133 6349 0.026674 CGCACACACACACACAAGAG 59.973 55.000 0.00 0.00 0.00 2.85
6137 6353 3.858989 CGCGCACACACACACACA 61.859 61.111 8.75 0.00 0.00 3.72
6162 6378 3.640407 AGTGCATGCAGTCCCCGT 61.640 61.111 23.41 0.00 0.00 5.28
6163 6379 3.129502 CAGTGCATGCAGTCCCCG 61.130 66.667 25.16 10.48 0.00 5.73
6164 6380 2.753043 CCAGTGCATGCAGTCCCC 60.753 66.667 25.16 11.11 0.00 4.81
6166 6382 1.302752 TGTCCAGTGCATGCAGTCC 60.303 57.895 25.16 15.65 0.00 3.85
6168 6384 1.303074 CCTGTCCAGTGCATGCAGT 60.303 57.895 23.41 22.90 0.00 4.40
6169 6385 1.303074 ACCTGTCCAGTGCATGCAG 60.303 57.895 23.41 10.61 0.00 4.41
6170 6386 1.302752 GACCTGTCCAGTGCATGCA 60.303 57.895 18.46 18.46 0.00 3.96
6171 6387 0.250234 TAGACCTGTCCAGTGCATGC 59.750 55.000 11.82 11.82 0.00 4.06
6172 6388 2.234661 TCTTAGACCTGTCCAGTGCATG 59.765 50.000 0.00 0.00 0.00 4.06
6173 6389 2.499289 CTCTTAGACCTGTCCAGTGCAT 59.501 50.000 0.00 0.00 0.00 3.96
6174 6390 1.895798 CTCTTAGACCTGTCCAGTGCA 59.104 52.381 0.00 0.00 0.00 4.57
6175 6391 1.896465 ACTCTTAGACCTGTCCAGTGC 59.104 52.381 0.00 0.00 0.00 4.40
6176 6392 2.894126 ACACTCTTAGACCTGTCCAGTG 59.106 50.000 11.66 11.66 36.63 3.66
6220 6436 5.009210 ACAGCAGCCAAACGAAAATTAGTTA 59.991 36.000 0.00 0.00 0.00 2.24
6255 6471 0.097674 GCATGTACAAGCAAGCTCCG 59.902 55.000 17.73 0.00 31.28 4.63
6261 6477 3.070476 TCCATCTGCATGTACAAGCAA 57.930 42.857 24.35 16.10 40.73 3.91
6369 6585 7.940850 TCAGGAAAACAAAATTACCTCTCTTG 58.059 34.615 0.00 0.00 0.00 3.02
6393 6609 4.836125 TTCAAACCTGATGAGCTGTTTC 57.164 40.909 0.00 0.00 0.00 2.78
6412 6630 8.530269 AGAACAATTTTGCTGATGAATCTTTC 57.470 30.769 0.00 0.00 0.00 2.62
6496 6714 1.760613 CCATGCCATTTTGAGCCATCT 59.239 47.619 0.00 0.00 0.00 2.90
6499 6717 1.597989 GCCATGCCATTTTGAGCCA 59.402 52.632 0.00 0.00 0.00 4.75
6530 6748 2.949644 GCTATACGCCATTTGGGAACTT 59.050 45.455 0.00 0.00 40.01 2.66
6535 6753 0.250124 TCCGCTATACGCCATTTGGG 60.250 55.000 0.00 0.00 41.76 4.12
6549 6767 5.091261 ACTATGTTCTCTTTTCATCCGCT 57.909 39.130 0.00 0.00 0.00 5.52
6572 6790 8.498358 GCAAAAGATAAACTGCAAAGCTAAAAT 58.502 29.630 0.00 0.00 34.87 1.82
6619 6848 1.312815 AAGTTGCTTGCTCTGGACAC 58.687 50.000 0.00 0.00 0.00 3.67
6667 6899 4.020039 ACATGCATGGAAATTTGTGACCAT 60.020 37.500 29.41 0.00 42.83 3.55
6668 6900 3.324268 ACATGCATGGAAATTTGTGACCA 59.676 39.130 29.41 0.00 36.83 4.02
6796 7030 5.075493 AGTTTGACAGATTTCAAGCCTGAT 58.925 37.500 0.00 0.00 37.41 2.90
6799 7033 4.723309 AGAGTTTGACAGATTTCAAGCCT 58.277 39.130 0.00 0.00 37.41 4.58
6892 7126 0.036199 AAGAAGCAGCAGGAGCAGAG 60.036 55.000 0.00 0.00 45.49 3.35
6973 7207 3.136123 CTGCCCCTCACCAATGCG 61.136 66.667 0.00 0.00 0.00 4.73
7012 7246 2.158986 CGAGTTCATCTGGGAGCTCAAT 60.159 50.000 17.19 0.03 43.02 2.57
7013 7247 1.205655 CGAGTTCATCTGGGAGCTCAA 59.794 52.381 17.19 1.72 43.02 3.02
7093 7327 5.102953 TCACCCGATTCTTCATCAAGATT 57.897 39.130 0.00 0.00 38.50 2.40
7312 7546 2.689034 GGGGACTACTGGCAGGCT 60.689 66.667 20.34 0.44 0.00 4.58
7320 7554 3.680196 TGGCGGAGGGGGACTACT 61.680 66.667 0.00 0.00 0.00 2.57


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.