Multiple sequence alignment - TraesCS4B01G083000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G083000 chr4B 100.000 7084 0 0 1 7084 82002881 82009964 0.000000e+00 13082.0
1 TraesCS4B01G083000 chr4B 99.644 562 2 0 3155 3716 483772044 483772605 0.000000e+00 1027.0
2 TraesCS4B01G083000 chr4B 83.135 587 97 2 5014 5599 81995519 81996104 1.050000e-147 534.0
3 TraesCS4B01G083000 chr4B 80.510 549 91 11 3890 4427 81994469 81995012 2.380000e-109 407.0
4 TraesCS4B01G083000 chr4B 84.772 197 27 3 1883 2079 82004532 82004725 2.020000e-45 195.0
5 TraesCS4B01G083000 chr4B 84.772 197 27 3 1652 1845 82004763 82004959 2.020000e-45 195.0
6 TraesCS4B01G083000 chr4D 96.194 3337 100 12 3748 7084 55049824 55053133 0.000000e+00 5433.0
7 TraesCS4B01G083000 chr4D 93.200 1000 49 11 2176 3159 55048737 55049733 0.000000e+00 1452.0
8 TraesCS4B01G083000 chr4D 88.561 1119 75 29 778 1859 55046886 55047988 0.000000e+00 1308.0
9 TraesCS4B01G083000 chr4D 94.671 563 30 0 3155 3717 386933085 386933647 0.000000e+00 874.0
10 TraesCS4B01G083000 chr4D 83.104 509 62 16 1867 2358 55047763 55048264 6.520000e-120 442.0
11 TraesCS4B01G083000 chr4D 80.239 587 99 7 5014 5599 55044011 55044581 6.570000e-115 425.0
12 TraesCS4B01G083000 chr4D 79.197 548 92 15 3902 4437 55042873 55043410 1.880000e-95 361.0
13 TraesCS4B01G083000 chr4D 83.529 340 31 12 322 641 55046448 55046782 1.930000e-75 294.0
14 TraesCS4B01G083000 chr4D 89.873 79 8 0 248 326 55045842 55045920 1.260000e-17 102.0
15 TraesCS4B01G083000 chr4A 95.442 2633 98 9 4462 7084 542035220 542032600 0.000000e+00 4178.0
16 TraesCS4B01G083000 chr4A 90.153 1635 91 28 248 1859 542039232 542037645 0.000000e+00 2063.0
17 TraesCS4B01G083000 chr4A 93.063 1182 61 7 1992 3159 542037210 542036036 0.000000e+00 1709.0
18 TraesCS4B01G083000 chr4A 93.103 725 32 16 3748 4464 542035973 542035259 0.000000e+00 1046.0
19 TraesCS4B01G083000 chr4A 82.339 419 50 16 1956 2358 542037779 542037369 6.800000e-90 342.0
20 TraesCS4B01G083000 chr4A 87.773 229 28 0 3893 4121 542042032 542041804 1.170000e-67 268.0
21 TraesCS4B01G083000 chr4A 88.298 94 2 1 150 243 542039387 542039303 3.500000e-18 104.0
22 TraesCS4B01G083000 chr6A 89.085 962 83 15 4439 5390 524291659 524290710 0.000000e+00 1175.0
23 TraesCS4B01G083000 chr6A 95.349 559 24 1 3155 3713 162274312 162273756 0.000000e+00 887.0
24 TraesCS4B01G083000 chr3A 88.462 962 89 15 4439 5390 459156044 459156993 0.000000e+00 1142.0
25 TraesCS4B01G083000 chr3A 95.487 554 24 1 3155 3708 55446530 55447082 0.000000e+00 883.0
26 TraesCS4B01G083000 chr3A 90.517 116 10 1 3045 3160 40156380 40156494 1.230000e-32 152.0
27 TraesCS4B01G083000 chr7B 88.210 933 88 15 4439 5361 260783545 260784465 0.000000e+00 1094.0
28 TraesCS4B01G083000 chr2B 96.880 577 16 2 3155 3730 77334620 77335195 0.000000e+00 965.0
29 TraesCS4B01G083000 chr3B 97.679 560 13 0 3155 3714 766099994 766100553 0.000000e+00 963.0
30 TraesCS4B01G083000 chr1A 97.292 554 15 0 3155 3708 565176717 565177270 0.000000e+00 941.0
31 TraesCS4B01G083000 chr1A 96.797 562 18 0 3155 3716 8732698 8733259 0.000000e+00 939.0
32 TraesCS4B01G083000 chr1A 84.746 767 72 23 4439 5172 22355952 22356706 0.000000e+00 726.0
33 TraesCS4B01G083000 chr6D 95.714 560 24 0 3155 3714 15120051 15120610 0.000000e+00 902.0
34 TraesCS4B01G083000 chr2A 85.280 625 65 17 4775 5390 764744132 764743526 2.810000e-173 619.0
35 TraesCS4B01G083000 chr2A 88.980 245 22 3 4439 4680 764744397 764744155 1.490000e-76 298.0
36 TraesCS4B01G083000 chr5D 91.071 112 9 1 3049 3160 432927730 432927620 4.430000e-32 150.0
37 TraesCS4B01G083000 chr3D 90.566 106 9 1 3055 3160 535595633 535595529 9.580000e-29 139.0
38 TraesCS4B01G083000 chr3D 92.553 94 7 0 3055 3148 384570670 384570577 1.240000e-27 135.0
39 TraesCS4B01G083000 chr2D 87.500 112 13 1 3049 3160 54657398 54657288 2.070000e-25 128.0
40 TraesCS4B01G083000 chr1B 91.358 81 6 1 3080 3160 163586638 163586717 7.510000e-20 110.0
41 TraesCS4B01G083000 chr5B 85.870 92 13 0 4545 4636 176223627 176223536 1.630000e-16 99.0
42 TraesCS4B01G083000 chr5A 85.870 92 13 0 4545 4636 245954784 245954693 1.630000e-16 99.0
43 TraesCS4B01G083000 chrUn 89.855 69 4 2 2687 2754 17141807 17141873 1.270000e-12 86.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G083000 chr4B 82002881 82009964 7083 False 13082.000000 13082 100.000000 1 7084 1 chr4B.!!$F1 7083
1 TraesCS4B01G083000 chr4B 483772044 483772605 561 False 1027.000000 1027 99.644000 3155 3716 1 chr4B.!!$F2 561
2 TraesCS4B01G083000 chr4B 81994469 81996104 1635 False 470.500000 534 81.822500 3890 5599 2 chr4B.!!$F3 1709
3 TraesCS4B01G083000 chr4D 55042873 55053133 10260 False 1227.125000 5433 86.737125 248 7084 8 chr4D.!!$F2 6836
4 TraesCS4B01G083000 chr4D 386933085 386933647 562 False 874.000000 874 94.671000 3155 3717 1 chr4D.!!$F1 562
5 TraesCS4B01G083000 chr4A 542032600 542042032 9432 True 1387.142857 4178 90.024429 150 7084 7 chr4A.!!$R1 6934
6 TraesCS4B01G083000 chr6A 524290710 524291659 949 True 1175.000000 1175 89.085000 4439 5390 1 chr6A.!!$R2 951
7 TraesCS4B01G083000 chr6A 162273756 162274312 556 True 887.000000 887 95.349000 3155 3713 1 chr6A.!!$R1 558
8 TraesCS4B01G083000 chr3A 459156044 459156993 949 False 1142.000000 1142 88.462000 4439 5390 1 chr3A.!!$F3 951
9 TraesCS4B01G083000 chr3A 55446530 55447082 552 False 883.000000 883 95.487000 3155 3708 1 chr3A.!!$F2 553
10 TraesCS4B01G083000 chr7B 260783545 260784465 920 False 1094.000000 1094 88.210000 4439 5361 1 chr7B.!!$F1 922
11 TraesCS4B01G083000 chr2B 77334620 77335195 575 False 965.000000 965 96.880000 3155 3730 1 chr2B.!!$F1 575
12 TraesCS4B01G083000 chr3B 766099994 766100553 559 False 963.000000 963 97.679000 3155 3714 1 chr3B.!!$F1 559
13 TraesCS4B01G083000 chr1A 565176717 565177270 553 False 941.000000 941 97.292000 3155 3708 1 chr1A.!!$F3 553
14 TraesCS4B01G083000 chr1A 8732698 8733259 561 False 939.000000 939 96.797000 3155 3716 1 chr1A.!!$F1 561
15 TraesCS4B01G083000 chr1A 22355952 22356706 754 False 726.000000 726 84.746000 4439 5172 1 chr1A.!!$F2 733
16 TraesCS4B01G083000 chr6D 15120051 15120610 559 False 902.000000 902 95.714000 3155 3714 1 chr6D.!!$F1 559
17 TraesCS4B01G083000 chr2A 764743526 764744397 871 True 458.500000 619 87.130000 4439 5390 2 chr2A.!!$R1 951

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
899 4547 0.036732 AATCCTGTTCTTGGCTGCGA 59.963 50.000 0.00 0.0 0.00 5.10 F
1661 5338 1.000955 AGAAGATGTTCTTGCGGTCGT 59.999 47.619 0.00 0.0 40.35 4.34 F
1887 5580 0.098376 GAAGATGGCTCTTGCTTGCG 59.902 55.000 4.31 0.0 41.87 4.85 F
2102 6270 0.109365 TCCAAATTTGCATCGCCGTG 60.109 50.000 12.92 0.0 0.00 4.94 F
2103 6271 1.077645 CCAAATTTGCATCGCCGTGG 61.078 55.000 12.92 0.0 0.00 4.94 F
2572 6756 1.303236 TGCGGCAGCCATTGTACTT 60.303 52.632 13.30 0.0 44.33 2.24 F
3782 8028 2.101750 TCTGGTACACAAAGCGAAGTCA 59.898 45.455 0.00 0.0 0.00 3.41 F
4282 8534 2.347490 GAGAGGCGCTTCCAACCA 59.653 61.111 16.77 0.0 37.29 3.67 F
5456 9846 0.033796 CCTACACCGTGGTCCTCCTA 60.034 60.000 3.03 0.0 34.23 2.94 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1868 5561 0.098376 CGCAAGCAAGAGCCATCTTC 59.902 55.000 0.00 0.00 44.15 2.87 R
3578 7763 0.998928 TGGCCCTTGAAATGCCTCTA 59.001 50.000 0.00 0.00 45.56 2.43 R
3800 8046 5.033589 ACAAAAGAAAACATGGCCAATGA 57.966 34.783 10.96 0.00 38.72 2.57 R
4282 8534 1.375326 GGGCTCCGGAACTTTCACT 59.625 57.895 5.23 0.00 0.00 3.41 R
4450 8702 5.965922 TGACCAACTACTCAGTATGTGATG 58.034 41.667 0.00 0.00 37.40 3.07 R
4478 8774 2.417107 CCAACACTGAAGTTTGCAAGCA 60.417 45.455 16.04 4.84 0.00 3.91 R
5219 9601 0.583438 CGAATATGAAGCTGGCCACG 59.417 55.000 0.00 0.00 0.00 4.94 R
5789 10179 0.829990 TCACCTCCGCAAGCATGATA 59.170 50.000 0.00 0.00 0.00 2.15 R
6849 11248 0.034477 AGTGGGAGCCAATAAACCCG 60.034 55.000 0.00 0.00 44.70 5.28 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 1.001887 ACTCTCGACCGCCTCTCTT 60.002 57.895 0.00 0.00 0.00 2.85
19 20 1.309499 ACTCTCGACCGCCTCTCTTG 61.309 60.000 0.00 0.00 0.00 3.02
20 21 1.999071 CTCTCGACCGCCTCTCTTGG 61.999 65.000 0.00 0.00 0.00 3.61
21 22 2.035155 TCGACCGCCTCTCTTGGA 59.965 61.111 0.00 0.00 0.00 3.53
22 23 1.999071 CTCGACCGCCTCTCTTGGAG 61.999 65.000 0.00 0.00 41.51 3.86
23 24 2.046864 CGACCGCCTCTCTTGGAGA 61.047 63.158 0.00 0.00 44.45 3.71
24 25 1.388065 CGACCGCCTCTCTTGGAGAT 61.388 60.000 0.00 0.00 44.45 2.75
27 28 0.826715 CCGCCTCTCTTGGAGATTGA 59.173 55.000 0.00 0.00 44.45 2.57
28 29 1.472376 CCGCCTCTCTTGGAGATTGAC 60.472 57.143 0.00 0.00 44.45 3.18
30 31 1.205893 GCCTCTCTTGGAGATTGACGT 59.794 52.381 0.00 0.00 44.45 4.34
31 32 2.886081 CCTCTCTTGGAGATTGACGTG 58.114 52.381 0.00 0.00 44.45 4.49
33 34 3.249091 CTCTCTTGGAGATTGACGTGTG 58.751 50.000 0.00 0.00 44.45 3.82
34 35 2.890945 TCTCTTGGAGATTGACGTGTGA 59.109 45.455 0.00 0.00 33.35 3.58
35 36 3.511540 TCTCTTGGAGATTGACGTGTGAT 59.488 43.478 0.00 0.00 33.35 3.06
37 38 2.385013 TGGAGATTGACGTGTGATGG 57.615 50.000 0.00 0.00 0.00 3.51
38 39 1.899142 TGGAGATTGACGTGTGATGGA 59.101 47.619 0.00 0.00 0.00 3.41
39 40 2.501316 TGGAGATTGACGTGTGATGGAT 59.499 45.455 0.00 0.00 0.00 3.41
40 41 2.868583 GGAGATTGACGTGTGATGGATG 59.131 50.000 0.00 0.00 0.00 3.51
41 42 2.283298 AGATTGACGTGTGATGGATGC 58.717 47.619 0.00 0.00 0.00 3.91
42 43 2.093288 AGATTGACGTGTGATGGATGCT 60.093 45.455 0.00 0.00 0.00 3.79
44 45 1.020861 TGACGTGTGATGGATGCTGC 61.021 55.000 0.00 0.00 0.00 5.25
45 46 0.742281 GACGTGTGATGGATGCTGCT 60.742 55.000 0.00 0.00 0.00 4.24
47 48 1.759293 CGTGTGATGGATGCTGCTCG 61.759 60.000 0.00 0.00 0.00 5.03
49 50 0.466963 TGTGATGGATGCTGCTCGAT 59.533 50.000 0.00 0.00 0.00 3.59
50 51 1.146637 GTGATGGATGCTGCTCGATC 58.853 55.000 0.00 8.77 32.72 3.69
51 52 0.754472 TGATGGATGCTGCTCGATCA 59.246 50.000 16.48 16.48 37.84 2.92
52 53 1.270147 TGATGGATGCTGCTCGATCAG 60.270 52.381 11.90 11.90 36.03 2.90
53 54 0.757512 ATGGATGCTGCTCGATCAGT 59.242 50.000 16.97 0.00 36.49 3.41
54 55 0.538584 TGGATGCTGCTCGATCAGTT 59.461 50.000 16.97 5.93 36.49 3.16
55 56 1.216122 GGATGCTGCTCGATCAGTTC 58.784 55.000 16.97 13.49 36.49 3.01
57 58 0.829333 ATGCTGCTCGATCAGTTCCT 59.171 50.000 16.97 0.00 36.49 3.36
59 60 1.427592 GCTGCTCGATCAGTTCCTGC 61.428 60.000 16.97 0.00 36.49 4.85
60 61 0.175302 CTGCTCGATCAGTTCCTGCT 59.825 55.000 8.12 0.00 0.00 4.24
62 63 1.135139 TGCTCGATCAGTTCCTGCTAC 59.865 52.381 0.00 0.00 0.00 3.58
63 64 1.537135 GCTCGATCAGTTCCTGCTACC 60.537 57.143 0.00 0.00 0.00 3.18
64 65 0.738975 TCGATCAGTTCCTGCTACCG 59.261 55.000 0.00 0.00 0.00 4.02
65 66 0.738975 CGATCAGTTCCTGCTACCGA 59.261 55.000 0.00 0.00 0.00 4.69
67 68 1.751924 GATCAGTTCCTGCTACCGAGT 59.248 52.381 0.00 0.00 0.00 4.18
68 69 0.888619 TCAGTTCCTGCTACCGAGTG 59.111 55.000 0.00 0.00 0.00 3.51
69 70 0.603569 CAGTTCCTGCTACCGAGTGT 59.396 55.000 0.00 0.00 0.00 3.55
70 71 1.000955 CAGTTCCTGCTACCGAGTGTT 59.999 52.381 0.00 0.00 0.00 3.32
71 72 1.000955 AGTTCCTGCTACCGAGTGTTG 59.999 52.381 0.00 0.00 0.00 3.33
72 73 1.045407 TTCCTGCTACCGAGTGTTGT 58.955 50.000 0.00 0.00 0.00 3.32
73 74 1.045407 TCCTGCTACCGAGTGTTGTT 58.955 50.000 0.00 0.00 0.00 2.83
74 75 1.000506 TCCTGCTACCGAGTGTTGTTC 59.999 52.381 0.00 0.00 0.00 3.18
75 76 1.270094 CCTGCTACCGAGTGTTGTTCA 60.270 52.381 0.00 0.00 0.00 3.18
76 77 2.061773 CTGCTACCGAGTGTTGTTCAG 58.938 52.381 0.00 0.00 0.00 3.02
77 78 0.790814 GCTACCGAGTGTTGTTCAGC 59.209 55.000 0.00 0.00 0.00 4.26
78 79 1.060713 CTACCGAGTGTTGTTCAGCG 58.939 55.000 0.00 0.00 0.00 5.18
79 80 0.319211 TACCGAGTGTTGTTCAGCGG 60.319 55.000 0.00 0.00 45.00 5.52
80 81 2.551270 CGAGTGTTGTTCAGCGGC 59.449 61.111 0.00 0.00 0.00 6.53
81 82 1.956170 CGAGTGTTGTTCAGCGGCT 60.956 57.895 0.00 0.00 0.00 5.52
82 83 1.862806 GAGTGTTGTTCAGCGGCTC 59.137 57.895 0.00 0.00 0.00 4.70
84 85 1.891919 GTGTTGTTCAGCGGCTCCA 60.892 57.895 0.00 0.00 0.00 3.86
85 86 1.891919 TGTTGTTCAGCGGCTCCAC 60.892 57.895 0.00 0.00 0.00 4.02
86 87 2.281484 TTGTTCAGCGGCTCCACC 60.281 61.111 0.00 0.00 0.00 4.61
88 89 3.050275 GTTCAGCGGCTCCACCAC 61.050 66.667 0.00 0.00 39.03 4.16
89 90 3.241530 TTCAGCGGCTCCACCACT 61.242 61.111 0.00 0.00 39.03 4.00
90 91 2.818169 TTCAGCGGCTCCACCACTT 61.818 57.895 0.00 0.00 39.03 3.16
91 92 2.281761 CAGCGGCTCCACCACTTT 60.282 61.111 0.00 0.00 39.03 2.66
92 93 2.032681 AGCGGCTCCACCACTTTC 59.967 61.111 0.00 0.00 39.03 2.62
93 94 3.056328 GCGGCTCCACCACTTTCC 61.056 66.667 0.00 0.00 39.03 3.13
94 95 2.750350 CGGCTCCACCACTTTCCT 59.250 61.111 0.00 0.00 39.03 3.36
96 97 1.973812 GGCTCCACCACTTTCCTGC 60.974 63.158 0.00 0.00 38.86 4.85
97 98 1.228245 GCTCCACCACTTTCCTGCA 60.228 57.895 0.00 0.00 0.00 4.41
98 99 0.610232 GCTCCACCACTTTCCTGCAT 60.610 55.000 0.00 0.00 0.00 3.96
99 100 1.915141 CTCCACCACTTTCCTGCATT 58.085 50.000 0.00 0.00 0.00 3.56
100 101 1.542915 CTCCACCACTTTCCTGCATTG 59.457 52.381 0.00 0.00 0.00 2.82
103 104 1.270550 CACCACTTTCCTGCATTGACC 59.729 52.381 0.00 0.00 0.00 4.02
104 105 1.145738 ACCACTTTCCTGCATTGACCT 59.854 47.619 0.00 0.00 0.00 3.85
105 106 2.242043 CCACTTTCCTGCATTGACCTT 58.758 47.619 0.00 0.00 0.00 3.50
106 107 2.029649 CCACTTTCCTGCATTGACCTTG 60.030 50.000 0.00 0.00 0.00 3.61
107 108 2.886523 CACTTTCCTGCATTGACCTTGA 59.113 45.455 0.00 0.00 0.00 3.02
108 109 2.887152 ACTTTCCTGCATTGACCTTGAC 59.113 45.455 0.00 0.00 0.00 3.18
109 110 2.655090 TTCCTGCATTGACCTTGACA 57.345 45.000 0.00 0.00 0.00 3.58
110 111 2.885135 TCCTGCATTGACCTTGACAT 57.115 45.000 0.00 0.00 0.00 3.06
113 114 2.821378 CCTGCATTGACCTTGACATGAA 59.179 45.455 0.00 0.00 0.00 2.57
115 116 4.262121 CCTGCATTGACCTTGACATGAAAA 60.262 41.667 0.00 0.00 0.00 2.29
116 117 4.619973 TGCATTGACCTTGACATGAAAAC 58.380 39.130 0.00 0.00 0.00 2.43
117 118 4.341806 TGCATTGACCTTGACATGAAAACT 59.658 37.500 0.00 0.00 0.00 2.66
119 120 5.176223 GCATTGACCTTGACATGAAAACTTG 59.824 40.000 0.00 0.00 0.00 3.16
120 121 4.916983 TGACCTTGACATGAAAACTTGG 57.083 40.909 0.00 0.00 0.00 3.61
121 122 3.636300 TGACCTTGACATGAAAACTTGGG 59.364 43.478 0.00 0.00 0.00 4.12
122 123 2.365293 ACCTTGACATGAAAACTTGGGC 59.635 45.455 0.00 0.00 0.00 5.36
123 124 2.364970 CCTTGACATGAAAACTTGGGCA 59.635 45.455 0.00 0.00 0.00 5.36
124 125 3.383761 CTTGACATGAAAACTTGGGCAC 58.616 45.455 0.00 0.00 0.00 5.01
142 143 3.167414 CCTTCCCGGGTGGTTCTT 58.833 61.111 22.86 0.00 34.77 2.52
143 144 1.002502 CCTTCCCGGGTGGTTCTTC 60.003 63.158 22.86 0.00 34.77 2.87
144 145 1.758592 CTTCCCGGGTGGTTCTTCA 59.241 57.895 22.86 0.00 34.77 3.02
146 147 0.774908 TTCCCGGGTGGTTCTTCATT 59.225 50.000 22.86 0.00 34.77 2.57
147 148 1.659022 TCCCGGGTGGTTCTTCATTA 58.341 50.000 22.86 0.00 34.77 1.90
148 149 1.279846 TCCCGGGTGGTTCTTCATTAC 59.720 52.381 22.86 0.00 34.77 1.89
150 151 2.356741 CCCGGGTGGTTCTTCATTACAT 60.357 50.000 14.18 0.00 0.00 2.29
152 153 2.097466 CGGGTGGTTCTTCATTACATGC 59.903 50.000 0.00 0.00 0.00 4.06
153 154 3.356290 GGGTGGTTCTTCATTACATGCT 58.644 45.455 0.00 0.00 0.00 3.79
154 155 3.129287 GGGTGGTTCTTCATTACATGCTG 59.871 47.826 0.00 0.00 0.00 4.41
155 156 3.129287 GGTGGTTCTTCATTACATGCTGG 59.871 47.826 0.00 0.00 0.00 4.85
156 157 4.009675 GTGGTTCTTCATTACATGCTGGA 58.990 43.478 0.00 0.00 0.00 3.86
157 158 4.009675 TGGTTCTTCATTACATGCTGGAC 58.990 43.478 0.00 0.00 0.00 4.02
158 159 3.378427 GGTTCTTCATTACATGCTGGACC 59.622 47.826 0.00 0.00 0.00 4.46
159 160 4.265073 GTTCTTCATTACATGCTGGACCT 58.735 43.478 0.00 0.00 0.00 3.85
160 161 4.574674 TCTTCATTACATGCTGGACCTT 57.425 40.909 0.00 0.00 0.00 3.50
161 162 4.264253 TCTTCATTACATGCTGGACCTTG 58.736 43.478 0.00 0.00 0.00 3.61
164 165 0.676466 TTACATGCTGGACCTTGGCG 60.676 55.000 0.00 0.00 0.00 5.69
165 166 1.549243 TACATGCTGGACCTTGGCGA 61.549 55.000 0.00 0.00 0.00 5.54
166 167 1.452651 CATGCTGGACCTTGGCGAT 60.453 57.895 0.00 0.00 0.00 4.58
168 169 0.767375 ATGCTGGACCTTGGCGATAT 59.233 50.000 0.00 0.00 0.00 1.63
169 170 0.546122 TGCTGGACCTTGGCGATATT 59.454 50.000 0.00 0.00 0.00 1.28
170 171 0.947244 GCTGGACCTTGGCGATATTG 59.053 55.000 0.00 0.00 0.00 1.90
173 174 0.465460 GGACCTTGGCGATATTGGCA 60.465 55.000 15.01 15.01 43.36 4.92
174 175 0.663153 GACCTTGGCGATATTGGCAC 59.337 55.000 18.40 4.07 44.88 5.01
175 176 1.095228 ACCTTGGCGATATTGGCACG 61.095 55.000 18.40 16.14 44.88 5.34
176 177 0.813610 CCTTGGCGATATTGGCACGA 60.814 55.000 20.81 7.49 44.88 4.35
177 178 0.304705 CTTGGCGATATTGGCACGAC 59.695 55.000 18.40 0.00 44.88 4.34
181 182 1.924335 CGATATTGGCACGACACGG 59.076 57.895 0.00 0.00 0.00 4.94
183 184 0.928229 GATATTGGCACGACACGGTC 59.072 55.000 0.00 0.00 0.00 4.79
184 185 0.535335 ATATTGGCACGACACGGTCT 59.465 50.000 0.00 0.00 0.00 3.85
185 186 0.389296 TATTGGCACGACACGGTCTG 60.389 55.000 0.00 2.42 0.00 3.51
186 187 4.961511 TGGCACGACACGGTCTGC 62.962 66.667 14.16 14.16 36.62 4.26
197 198 3.909662 GGTCTGCCGCACAATGAT 58.090 55.556 0.00 0.00 0.00 2.45
198 199 2.183409 GGTCTGCCGCACAATGATT 58.817 52.632 0.00 0.00 0.00 2.57
199 200 1.378531 GGTCTGCCGCACAATGATTA 58.621 50.000 0.00 0.00 0.00 1.75
200 201 1.949525 GGTCTGCCGCACAATGATTAT 59.050 47.619 0.00 0.00 0.00 1.28
201 202 2.358898 GGTCTGCCGCACAATGATTATT 59.641 45.455 0.00 0.00 0.00 1.40
203 204 2.121786 CTGCCGCACAATGATTATTGC 58.878 47.619 9.96 0.00 46.05 3.56
204 205 1.122849 GCCGCACAATGATTATTGCG 58.877 50.000 20.32 20.32 46.05 4.85
205 206 1.122849 CCGCACAATGATTATTGCGC 58.877 50.000 21.32 11.95 46.05 6.09
206 207 1.122849 CGCACAATGATTATTGCGCC 58.877 50.000 16.94 2.58 45.16 6.53
207 208 1.490621 GCACAATGATTATTGCGCCC 58.509 50.000 11.12 0.00 46.05 6.13
208 209 1.067516 GCACAATGATTATTGCGCCCT 59.932 47.619 11.12 0.00 46.05 5.19
209 210 2.859806 GCACAATGATTATTGCGCCCTC 60.860 50.000 11.12 0.00 46.05 4.30
210 211 2.620115 CACAATGATTATTGCGCCCTCT 59.380 45.455 4.18 0.00 46.05 3.69
212 213 1.242076 ATGATTATTGCGCCCTCTGC 58.758 50.000 4.18 0.00 0.00 4.26
222 223 4.379243 CCCTCTGCGACCAAGCGT 62.379 66.667 0.00 0.00 40.67 5.07
223 224 2.811317 CCTCTGCGACCAAGCGTC 60.811 66.667 0.00 0.00 40.67 5.19
239 240 4.693532 TCGGAGACCATGCAACAC 57.306 55.556 0.00 0.00 0.00 3.32
240 241 1.003839 TCGGAGACCATGCAACACC 60.004 57.895 0.00 0.00 0.00 4.16
241 242 1.003355 CGGAGACCATGCAACACCT 60.003 57.895 0.00 0.00 0.00 4.00
242 243 1.021390 CGGAGACCATGCAACACCTC 61.021 60.000 0.00 0.00 0.00 3.85
244 245 1.340405 GGAGACCATGCAACACCTCAT 60.340 52.381 0.00 0.00 0.00 2.90
245 246 2.440409 GAGACCATGCAACACCTCATT 58.560 47.619 0.00 0.00 0.00 2.57
246 247 2.163010 GAGACCATGCAACACCTCATTG 59.837 50.000 0.00 0.00 0.00 2.82
247 248 1.203052 GACCATGCAACACCTCATTGG 59.797 52.381 0.00 0.00 42.93 3.16
249 250 0.108520 CATGCAACACCTCATTGGGC 60.109 55.000 0.00 0.00 41.11 5.36
250 251 1.597797 ATGCAACACCTCATTGGGCG 61.598 55.000 0.00 0.00 41.11 6.13
251 252 2.568090 CAACACCTCATTGGGCGC 59.432 61.111 0.00 0.00 41.11 6.53
279 3356 1.831736 TGACGGGGATTTTCTCCTCTC 59.168 52.381 0.00 0.00 43.15 3.20
351 3960 0.692476 TCACTGGTGAACCTCATGGG 59.308 55.000 0.51 0.00 36.53 4.00
369 3978 3.705051 TGGGTACTCACGATAAAGGACT 58.295 45.455 0.00 0.00 0.00 3.85
371 3980 3.446516 GGGTACTCACGATAAAGGACTGT 59.553 47.826 0.00 0.00 0.00 3.55
416 4025 7.390996 TCGTGTTGGTTTTTAGGAATTGCTATA 59.609 33.333 7.58 0.03 0.00 1.31
473 4082 1.202330 CATTTGCCATTGCCCCCTAA 58.798 50.000 0.00 0.00 36.33 2.69
548 4174 1.120530 AGTGGTGTCCGTCTCAAAGT 58.879 50.000 0.00 0.00 0.00 2.66
623 4253 1.682740 GGAACTCTCCCTCTCGTAGG 58.317 60.000 0.20 0.20 46.09 3.18
651 4281 4.222124 GGTACCTGATTCTGATTGTGGT 57.778 45.455 4.06 0.00 0.00 4.16
653 4283 2.440409 ACCTGATTCTGATTGTGGTGC 58.560 47.619 0.00 0.00 0.00 5.01
680 4319 4.859798 GGACGTGATCTCTTTCTGTACTTG 59.140 45.833 0.00 0.00 0.00 3.16
704 4343 1.064389 GTTTCTAATCAGCCCAGCCCT 60.064 52.381 0.00 0.00 0.00 5.19
705 4344 2.172717 GTTTCTAATCAGCCCAGCCCTA 59.827 50.000 0.00 0.00 0.00 3.53
738 4377 0.107214 GCCATTGTTCCAGGATCGGA 60.107 55.000 0.00 0.00 0.00 4.55
740 4379 1.210478 CCATTGTTCCAGGATCGGAGT 59.790 52.381 0.00 0.00 36.12 3.85
759 4398 1.342174 GTCCCTCTGGTACGTGAACAA 59.658 52.381 0.00 0.00 0.00 2.83
760 4399 1.342174 TCCCTCTGGTACGTGAACAAC 59.658 52.381 0.00 0.00 0.00 3.32
761 4400 1.069513 CCCTCTGGTACGTGAACAACA 59.930 52.381 0.00 0.00 0.00 3.33
762 4401 2.404215 CCTCTGGTACGTGAACAACAG 58.596 52.381 0.00 0.00 0.00 3.16
763 4402 2.035449 CCTCTGGTACGTGAACAACAGA 59.965 50.000 3.88 3.88 34.23 3.41
764 4403 3.306088 CCTCTGGTACGTGAACAACAGAT 60.306 47.826 4.34 0.00 34.81 2.90
765 4404 3.909430 TCTGGTACGTGAACAACAGATC 58.091 45.455 0.00 0.00 30.75 2.75
766 4405 2.661675 CTGGTACGTGAACAACAGATCG 59.338 50.000 0.00 0.00 0.00 3.69
767 4406 2.293955 TGGTACGTGAACAACAGATCGA 59.706 45.455 0.00 0.00 0.00 3.59
768 4407 3.057104 TGGTACGTGAACAACAGATCGAT 60.057 43.478 0.00 0.00 0.00 3.59
769 4408 3.924686 GGTACGTGAACAACAGATCGATT 59.075 43.478 0.00 0.00 0.00 3.34
893 4541 5.337009 CCAAGATTCCAAATCCTGTTCTTGG 60.337 44.000 12.77 12.77 42.37 3.61
899 4547 0.036732 AATCCTGTTCTTGGCTGCGA 59.963 50.000 0.00 0.00 0.00 5.10
925 4573 3.673746 TGCCGATGATCGTCAATTTTC 57.326 42.857 14.27 0.00 38.40 2.29
927 4575 3.063861 TGCCGATGATCGTCAATTTTCTG 59.936 43.478 14.27 0.00 38.40 3.02
979 4648 1.072806 TCGCCGGAAGCTACCTATCTA 59.927 52.381 5.05 0.00 40.39 1.98
985 4654 5.629600 GCCGGAAGCTACCTATCTATCTAGA 60.630 48.000 5.05 0.00 38.99 2.43
1162 4831 1.215382 CCCGTCAAGATGTCAGCGA 59.785 57.895 0.00 0.00 0.00 4.93
1269 4944 1.393597 GACCATCGTCGTTGTCGTCG 61.394 60.000 2.82 1.62 46.06 5.12
1470 5145 4.379243 AAGGTGCTCAGGTCCGCG 62.379 66.667 0.00 0.00 0.00 6.46
1563 5238 3.735037 GATCCCCTTCACCGCGTCC 62.735 68.421 4.92 0.00 0.00 4.79
1593 5268 2.159310 GGTGATCGAGTCCTCAACTGAG 60.159 54.545 0.00 0.00 38.74 3.35
1624 5301 1.623811 AGCTAGGTATGTTATGCCCCG 59.376 52.381 0.00 0.00 35.38 5.73
1660 5337 1.714794 AGAAGATGTTCTTGCGGTCG 58.285 50.000 0.00 0.00 40.35 4.79
1661 5338 1.000955 AGAAGATGTTCTTGCGGTCGT 59.999 47.619 0.00 0.00 40.35 4.34
1662 5339 1.390463 GAAGATGTTCTTGCGGTCGTC 59.610 52.381 0.00 0.00 36.73 4.20
1675 5363 3.181493 TGCGGTCGTCTTAGGTTATCTTC 60.181 47.826 0.00 0.00 0.00 2.87
1678 5366 5.648572 CGGTCGTCTTAGGTTATCTTCTTT 58.351 41.667 0.00 0.00 0.00 2.52
1682 5370 8.867935 GGTCGTCTTAGGTTATCTTCTTTTTAC 58.132 37.037 0.00 0.00 0.00 2.01
1710 5398 9.784531 AGTGAAGTTCTTCTCTTGATTTAATGA 57.215 29.630 12.74 0.00 0.00 2.57
1775 5463 5.757886 ACTTATTTGTTTCGTCCACACATG 58.242 37.500 0.00 0.00 0.00 3.21
1788 5476 3.319755 CCACACATGGTTTTTCATCTGC 58.680 45.455 0.00 0.00 41.64 4.26
1789 5477 3.243805 CCACACATGGTTTTTCATCTGCA 60.244 43.478 0.00 0.00 41.64 4.41
1790 5478 3.985279 CACACATGGTTTTTCATCTGCAG 59.015 43.478 7.63 7.63 0.00 4.41
1791 5479 3.638160 ACACATGGTTTTTCATCTGCAGT 59.362 39.130 14.67 0.00 0.00 4.40
1797 5487 7.599998 ACATGGTTTTTCATCTGCAGTAAATTC 59.400 33.333 14.67 8.73 0.00 2.17
1816 5509 7.852971 AAATTCCACCAAAATTGCAGATATG 57.147 32.000 0.00 0.00 0.00 1.78
1817 5510 5.999205 TTCCACCAAAATTGCAGATATGT 57.001 34.783 0.00 0.00 0.00 2.29
1818 5511 5.999205 TCCACCAAAATTGCAGATATGTT 57.001 34.783 0.00 0.00 0.00 2.71
1862 5555 8.894768 TTTGTATTTGGGTCAAAAATTGTAGG 57.105 30.769 0.00 0.00 36.90 3.18
1863 5556 6.459923 TGTATTTGGGTCAAAAATTGTAGGC 58.540 36.000 0.00 0.00 36.90 3.93
1864 5557 3.651803 TTGGGTCAAAAATTGTAGGCG 57.348 42.857 0.00 0.00 0.00 5.52
1865 5558 2.588620 TGGGTCAAAAATTGTAGGCGT 58.411 42.857 0.00 0.00 0.00 5.68
1867 5560 4.142790 TGGGTCAAAAATTGTAGGCGTAA 58.857 39.130 0.00 0.00 0.00 3.18
1868 5561 4.216687 TGGGTCAAAAATTGTAGGCGTAAG 59.783 41.667 0.00 0.00 43.44 2.34
1871 5564 6.084277 GGTCAAAAATTGTAGGCGTAAGAAG 58.916 40.000 0.00 0.00 43.02 2.85
1874 5567 7.481798 GTCAAAAATTGTAGGCGTAAGAAGATG 59.518 37.037 0.00 0.00 43.02 2.90
1875 5568 6.436843 AAAATTGTAGGCGTAAGAAGATGG 57.563 37.500 0.00 0.00 43.02 3.51
1876 5569 2.596904 TGTAGGCGTAAGAAGATGGC 57.403 50.000 0.00 0.00 43.02 4.40
1879 5572 1.490574 AGGCGTAAGAAGATGGCTCT 58.509 50.000 0.00 0.00 36.57 4.09
1880 5573 1.834263 AGGCGTAAGAAGATGGCTCTT 59.166 47.619 0.00 0.00 44.53 2.85
1881 5574 1.936547 GGCGTAAGAAGATGGCTCTTG 59.063 52.381 4.31 0.00 41.87 3.02
1882 5575 1.328986 GCGTAAGAAGATGGCTCTTGC 59.671 52.381 4.31 0.00 41.87 4.01
1883 5576 2.898705 CGTAAGAAGATGGCTCTTGCT 58.101 47.619 4.31 0.67 41.87 3.91
1884 5577 3.265791 CGTAAGAAGATGGCTCTTGCTT 58.734 45.455 4.31 8.96 41.87 3.91
1885 5578 3.063180 CGTAAGAAGATGGCTCTTGCTTG 59.937 47.826 4.31 0.00 41.87 4.01
1886 5579 1.461559 AGAAGATGGCTCTTGCTTGC 58.538 50.000 4.31 0.00 41.87 4.01
1887 5580 0.098376 GAAGATGGCTCTTGCTTGCG 59.902 55.000 4.31 0.00 41.87 4.85
1889 5582 2.034687 ATGGCTCTTGCTTGCGGT 59.965 55.556 0.00 0.00 39.59 5.68
1890 5583 1.986575 GATGGCTCTTGCTTGCGGTC 61.987 60.000 0.00 0.00 39.59 4.79
1891 5584 3.793144 GGCTCTTGCTTGCGGTCG 61.793 66.667 0.00 0.00 39.59 4.79
1893 5586 3.016474 GCTCTTGCTTGCGGTCGTC 62.016 63.158 0.00 0.00 36.03 4.20
1895 5588 0.946221 CTCTTGCTTGCGGTCGTCTT 60.946 55.000 0.00 0.00 0.00 3.01
1896 5589 0.944311 TCTTGCTTGCGGTCGTCTTC 60.944 55.000 0.00 0.00 0.00 2.87
1904 5927 0.869028 GCGGTCGTCTTCGGTTATCC 60.869 60.000 0.00 0.00 37.69 2.59
1911 5934 4.450080 GTCGTCTTCGGTTATCCTTTTGTT 59.550 41.667 0.00 0.00 37.69 2.83
1913 5936 6.312180 GTCGTCTTCGGTTATCCTTTTGTTAT 59.688 38.462 0.00 0.00 37.69 1.89
1914 5937 6.875195 TCGTCTTCGGTTATCCTTTTGTTATT 59.125 34.615 0.00 0.00 37.69 1.40
1916 5939 8.658609 CGTCTTCGGTTATCCTTTTGTTATTTA 58.341 33.333 0.00 0.00 0.00 1.40
1917 5940 9.983804 GTCTTCGGTTATCCTTTTGTTATTTAG 57.016 33.333 0.00 0.00 0.00 1.85
1964 5987 4.036567 TGATGCACAGCAATTTATCAGC 57.963 40.909 0.00 0.00 43.62 4.26
1965 5988 3.444388 TGATGCACAGCAATTTATCAGCA 59.556 39.130 0.00 0.00 43.62 4.41
1966 5989 3.220507 TGCACAGCAATTTATCAGCAC 57.779 42.857 0.00 0.00 34.76 4.40
1969 5992 3.989167 GCACAGCAATTTATCAGCACAAA 59.011 39.130 0.00 0.00 0.00 2.83
1970 5993 4.143263 GCACAGCAATTTATCAGCACAAAC 60.143 41.667 0.00 0.00 0.00 2.93
1972 5995 5.462729 CACAGCAATTTATCAGCACAAACAA 59.537 36.000 0.00 0.00 0.00 2.83
1973 5996 6.146510 CACAGCAATTTATCAGCACAAACAAT 59.853 34.615 0.00 0.00 0.00 2.71
1975 5998 7.227116 ACAGCAATTTATCAGCACAAACAATTT 59.773 29.630 0.00 0.00 0.00 1.82
1976 5999 8.071368 CAGCAATTTATCAGCACAAACAATTTT 58.929 29.630 0.00 0.00 0.00 1.82
1977 6000 9.270640 AGCAATTTATCAGCACAAACAATTTTA 57.729 25.926 0.00 0.00 0.00 1.52
1982 6005 6.949578 ATCAGCACAAACAATTTTATTCGG 57.050 33.333 0.00 0.00 0.00 4.30
1985 6008 3.124466 GCACAAACAATTTTATTCGGGGC 59.876 43.478 0.00 0.00 0.00 5.80
1987 6010 4.388469 CACAAACAATTTTATTCGGGGCTG 59.612 41.667 0.00 0.00 0.00 4.85
1988 6011 4.039852 ACAAACAATTTTATTCGGGGCTGT 59.960 37.500 0.00 0.00 0.00 4.40
2010 6178 6.045318 TGTTTTGTTTTGTCCACACATATGG 58.955 36.000 7.80 0.00 41.57 2.74
2023 6191 6.375174 TCCACACATATGGTTCTCATTTTCAG 59.625 38.462 7.80 0.00 40.95 3.02
2025 6193 7.025365 CACACATATGGTTCTCATTTTCAGTG 58.975 38.462 7.80 0.00 37.30 3.66
2034 6202 8.690884 TGGTTCTCATTTTCAGTGTAATTTCAA 58.309 29.630 0.00 0.00 0.00 2.69
2055 6223 7.565450 TCAACAAAATTGCAGATATGTTTCG 57.435 32.000 7.13 0.30 0.00 3.46
2056 6224 6.585702 TCAACAAAATTGCAGATATGTTTCGG 59.414 34.615 7.13 0.00 0.00 4.30
2060 6228 7.120579 ACAAAATTGCAGATATGTTTCGGTAGA 59.879 33.333 0.00 0.00 0.00 2.59
2097 6265 1.695813 TGCGTTCCAAATTTGCATCG 58.304 45.000 12.92 10.21 0.00 3.84
2102 6270 0.109365 TCCAAATTTGCATCGCCGTG 60.109 50.000 12.92 0.00 0.00 4.94
2103 6271 1.077645 CCAAATTTGCATCGCCGTGG 61.078 55.000 12.92 0.00 0.00 4.94
2122 6290 5.334569 CCGTGGAAATATTTCAGTGAACGTT 60.335 40.000 25.55 0.00 38.92 3.99
2142 6310 9.989394 GAACGTTAATTTCAGCAGAATTTAAAC 57.011 29.630 15.94 11.32 39.40 2.01
2144 6312 9.180678 ACGTTAATTTCAGCAGAATTTAAACAG 57.819 29.630 15.94 13.41 39.40 3.16
2150 6318 7.566760 TTCAGCAGAATTTAAACAGAACTCA 57.433 32.000 0.00 0.00 0.00 3.41
2151 6319 7.566760 TCAGCAGAATTTAAACAGAACTCAA 57.433 32.000 0.00 0.00 0.00 3.02
2237 6405 7.201688 GCCAAACTGAACCAAAATAACAATGTT 60.202 33.333 3.43 3.43 0.00 2.71
2308 6487 6.418101 ACATTCCATAGATGCAAAGTACAGT 58.582 36.000 0.00 0.00 0.00 3.55
2362 6543 9.793252 AATATCATTGGCGCATTATTAAGAATC 57.207 29.630 10.83 0.00 0.00 2.52
2367 6548 5.129634 TGGCGCATTATTAAGAATCAGGAA 58.870 37.500 10.83 0.00 0.00 3.36
2466 6650 7.868775 AGAACTTAGACAACCGGTTATTTTTC 58.131 34.615 21.79 15.04 0.00 2.29
2468 6652 7.430992 ACTTAGACAACCGGTTATTTTTCTC 57.569 36.000 21.79 6.02 0.00 2.87
2572 6756 1.303236 TGCGGCAGCCATTGTACTT 60.303 52.632 13.30 0.00 44.33 2.24
2602 6786 4.427394 GCTGATCTCGGCGACATT 57.573 55.556 4.99 0.00 38.61 2.71
2633 6817 6.493802 TGAGGTAGATTTACACTGAGAACTGT 59.506 38.462 0.00 0.00 0.00 3.55
2635 6819 8.418597 AGGTAGATTTACACTGAGAACTGTTA 57.581 34.615 0.00 0.00 0.00 2.41
2678 6863 3.565307 ACTTCCATTCTCAGTTGGCAAA 58.435 40.909 0.00 0.00 32.80 3.68
2945 7130 5.930135 TGATATTTTCTGTAGGGGAAGCTC 58.070 41.667 0.00 0.00 0.00 4.09
2948 7133 2.160721 TTCTGTAGGGGAAGCTCGAT 57.839 50.000 0.00 0.00 0.00 3.59
3578 7763 9.918630 CCAAACAAGATTCTGTATTGAAATCTT 57.081 29.630 4.23 4.23 33.32 2.40
3636 7821 6.402118 CCAAACATGTGAATTCGTATTCGTCT 60.402 38.462 0.00 0.00 42.55 4.18
3717 7902 2.103263 GAGACATCCAAACGGAGCCTAT 59.897 50.000 0.00 0.00 35.52 2.57
3737 7922 6.758886 GCCTATATGATATTGGCTCTGTGTAC 59.241 42.308 24.31 0.00 40.36 2.90
3743 7928 2.561478 TTGGCTCTGTGTACCTTTCC 57.439 50.000 0.00 0.00 0.00 3.13
3782 8028 2.101750 TCTGGTACACAAAGCGAAGTCA 59.898 45.455 0.00 0.00 0.00 3.41
3800 8046 6.375830 AAGTCAGATATGAGGCATGATCAT 57.624 37.500 15.58 15.58 40.45 2.45
4175 8421 9.388506 AGTATAGTCTGATTCAAGGAAAATGTG 57.611 33.333 0.00 0.00 0.00 3.21
4282 8534 2.347490 GAGAGGCGCTTCCAACCA 59.653 61.111 16.77 0.00 37.29 3.67
4477 8773 6.095580 TCACATACTGAGTAGTTGGTCAGATC 59.904 42.308 6.35 0.00 42.49 2.75
4478 8774 6.096141 CACATACTGAGTAGTTGGTCAGATCT 59.904 42.308 6.35 0.00 42.49 2.75
4524 8820 3.532542 GGAGTAGTTCCCAGCATACAAC 58.467 50.000 0.00 0.00 40.37 3.32
4687 8987 6.714492 CCTAAACATTTTTCCAAGTTGTTGC 58.286 36.000 1.45 0.00 31.34 4.17
4688 8988 4.856115 AACATTTTTCCAAGTTGTTGCG 57.144 36.364 1.45 0.00 31.64 4.85
4715 9046 9.170734 TCTACAAGATCTGAATCTGAATTTTGG 57.829 33.333 0.00 1.82 41.54 3.28
4831 9168 6.479001 GGAATTCGAGATGGTAATCTTTTCGA 59.521 38.462 0.00 0.00 43.48 3.71
5369 9759 1.973281 CACGGTGGCCAAGCTCATT 60.973 57.895 7.24 0.00 0.00 2.57
5390 9780 4.387343 TCCCCTCCCGGCTACGTT 62.387 66.667 0.00 0.00 38.78 3.99
5396 9786 1.381599 TCCCGGCTACGTTGGGTAT 60.382 57.895 12.71 0.00 43.75 2.73
5456 9846 0.033796 CCTACACCGTGGTCCTCCTA 60.034 60.000 3.03 0.00 34.23 2.94
5759 10149 2.434884 ATCGTGTTCCGGCAGCTG 60.435 61.111 10.11 10.11 37.11 4.24
5789 10179 1.218316 GGTCAAGGAGATCGCCGTT 59.782 57.895 10.07 2.36 0.00 4.44
5798 10188 2.408050 GAGATCGCCGTTATCATGCTT 58.592 47.619 0.00 0.00 0.00 3.91
6036 10426 3.367743 ACGTCGCCGTCCTTAGCA 61.368 61.111 0.00 0.00 46.28 3.49
6109 10499 7.117812 GCTAGTACAGTTTAATCAAGCAGTTCA 59.882 37.037 0.00 0.00 0.00 3.18
6154 10544 9.610104 TTTGTACTATATAGGGGATAAAGCAGA 57.390 33.333 14.25 0.00 0.00 4.26
6178 10571 4.332543 TGCATAGTTAAGTTTCAGATGCCG 59.667 41.667 10.90 0.00 37.90 5.69
6189 10582 0.381801 CAGATGCCGGCCATGTTTAC 59.618 55.000 26.77 6.09 33.29 2.01
6277 10670 4.870123 TTGGCAAGCAATACAAGACAAT 57.130 36.364 0.00 0.00 0.00 2.71
6278 10671 4.177165 TGGCAAGCAATACAAGACAATG 57.823 40.909 0.00 0.00 0.00 2.82
6283 10676 5.585390 CAAGCAATACAAGACAATGGGATC 58.415 41.667 0.00 0.00 0.00 3.36
6290 10683 5.712152 ACAAGACAATGGGATCAAACTTC 57.288 39.130 0.00 0.00 0.00 3.01
6293 10686 4.848357 AGACAATGGGATCAAACTTCGAT 58.152 39.130 0.00 0.00 0.00 3.59
6311 10704 4.119862 TCGATGATTTTCCTTCGATCACC 58.880 43.478 0.00 0.00 37.66 4.02
6491 10884 3.493350 CCATACCACCACATCAGTAGCTC 60.493 52.174 0.00 0.00 0.00 4.09
6509 10902 3.056107 AGCTCACGCATGTTAAGAAGGTA 60.056 43.478 0.00 0.00 39.10 3.08
6519 10912 3.649023 TGTTAAGAAGGTACAGAGGGCAA 59.351 43.478 0.00 0.00 0.00 4.52
6550 10943 1.516423 GTTGGACCTAGACCTCGCC 59.484 63.158 0.00 0.00 0.00 5.54
6715 11113 4.378459 CGTAAGACAAGCATTTCTGGGAAC 60.378 45.833 0.00 0.00 43.02 3.62
6736 11134 7.270779 GGAACTACGAAGGTATAATCCAAACT 58.729 38.462 0.00 0.00 30.67 2.66
6812 11211 6.650427 AGGAAAGAAAACATTCCCTGTAAC 57.350 37.500 1.10 0.00 45.08 2.50
6849 11248 2.168521 TCAGTGGAGCATTACCAGTAGC 59.831 50.000 0.00 0.00 38.80 3.58
6858 11257 3.881089 GCATTACCAGTAGCGGGTTTATT 59.119 43.478 0.00 0.00 39.85 1.40
6932 11331 6.127281 TGTTCTGGTGTAGTAGTTTTCTGTGA 60.127 38.462 0.00 0.00 0.00 3.58
6934 11333 6.880484 TCTGGTGTAGTAGTTTTCTGTGAAA 58.120 36.000 0.00 0.00 0.00 2.69
6935 11334 7.332557 TCTGGTGTAGTAGTTTTCTGTGAAAA 58.667 34.615 1.85 1.85 0.00 2.29
6936 11335 7.825270 TCTGGTGTAGTAGTTTTCTGTGAAAAA 59.175 33.333 6.99 0.00 0.00 1.94
7051 11450 1.616159 AAACCCATCCAAGACGGTTG 58.384 50.000 0.00 0.00 38.59 3.77
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.001887 AAGAGAGGCGGTCGAGAGT 60.002 57.895 0.00 0.00 0.00 3.24
2 3 2.046864 CCAAGAGAGGCGGTCGAGA 61.047 63.158 0.00 0.00 0.00 4.04
3 4 1.999071 CTCCAAGAGAGGCGGTCGAG 61.999 65.000 0.00 0.00 39.13 4.04
4 5 2.035155 TCCAAGAGAGGCGGTCGA 59.965 61.111 0.00 0.00 0.00 4.20
5 6 1.388065 ATCTCCAAGAGAGGCGGTCG 61.388 60.000 0.32 0.00 42.26 4.79
6 7 0.827368 AATCTCCAAGAGAGGCGGTC 59.173 55.000 0.32 0.00 42.26 4.79
8 9 0.826715 TCAATCTCCAAGAGAGGCGG 59.173 55.000 0.32 0.00 42.26 6.13
9 10 1.800655 CGTCAATCTCCAAGAGAGGCG 60.801 57.143 0.32 0.00 42.26 5.52
10 11 1.205893 ACGTCAATCTCCAAGAGAGGC 59.794 52.381 0.32 0.00 42.26 4.70
11 12 2.232452 ACACGTCAATCTCCAAGAGAGG 59.768 50.000 0.32 0.00 42.26 3.69
12 13 3.057245 TCACACGTCAATCTCCAAGAGAG 60.057 47.826 0.32 0.00 42.26 3.20
15 16 3.588955 CATCACACGTCAATCTCCAAGA 58.411 45.455 0.00 0.00 0.00 3.02
16 17 2.674852 CCATCACACGTCAATCTCCAAG 59.325 50.000 0.00 0.00 0.00 3.61
18 19 1.899142 TCCATCACACGTCAATCTCCA 59.101 47.619 0.00 0.00 0.00 3.86
19 20 2.672961 TCCATCACACGTCAATCTCC 57.327 50.000 0.00 0.00 0.00 3.71
20 21 2.286294 GCATCCATCACACGTCAATCTC 59.714 50.000 0.00 0.00 0.00 2.75
21 22 2.093288 AGCATCCATCACACGTCAATCT 60.093 45.455 0.00 0.00 0.00 2.40
22 23 2.031314 CAGCATCCATCACACGTCAATC 59.969 50.000 0.00 0.00 0.00 2.67
23 24 2.011947 CAGCATCCATCACACGTCAAT 58.988 47.619 0.00 0.00 0.00 2.57
24 25 1.441738 CAGCATCCATCACACGTCAA 58.558 50.000 0.00 0.00 0.00 3.18
27 28 0.742281 GAGCAGCATCCATCACACGT 60.742 55.000 0.00 0.00 0.00 4.49
28 29 1.759293 CGAGCAGCATCCATCACACG 61.759 60.000 0.00 0.00 0.00 4.49
30 31 0.466963 ATCGAGCAGCATCCATCACA 59.533 50.000 0.00 0.00 0.00 3.58
31 32 1.146637 GATCGAGCAGCATCCATCAC 58.853 55.000 0.00 0.00 0.00 3.06
33 34 1.270199 ACTGATCGAGCAGCATCCATC 60.270 52.381 29.45 0.00 39.51 3.51
34 35 0.757512 ACTGATCGAGCAGCATCCAT 59.242 50.000 29.45 7.01 39.51 3.41
35 36 0.538584 AACTGATCGAGCAGCATCCA 59.461 50.000 29.45 0.00 39.51 3.41
37 38 1.202510 AGGAACTGATCGAGCAGCATC 60.203 52.381 29.45 25.21 39.51 3.91
38 39 0.829333 AGGAACTGATCGAGCAGCAT 59.171 50.000 29.45 19.08 39.51 3.79
39 40 2.280835 AGGAACTGATCGAGCAGCA 58.719 52.632 29.45 5.29 39.51 4.41
51 52 1.000955 CAACACTCGGTAGCAGGAACT 59.999 52.381 0.00 0.00 43.88 3.01
52 53 1.270147 ACAACACTCGGTAGCAGGAAC 60.270 52.381 0.00 0.00 0.00 3.62
53 54 1.045407 ACAACACTCGGTAGCAGGAA 58.955 50.000 0.00 0.00 0.00 3.36
54 55 1.000506 GAACAACACTCGGTAGCAGGA 59.999 52.381 0.00 0.00 0.00 3.86
55 56 1.270094 TGAACAACACTCGGTAGCAGG 60.270 52.381 0.00 0.00 0.00 4.85
57 58 1.872237 GCTGAACAACACTCGGTAGCA 60.872 52.381 0.00 0.00 0.00 3.49
59 60 1.060713 CGCTGAACAACACTCGGTAG 58.939 55.000 0.00 0.00 0.00 3.18
60 61 0.319211 CCGCTGAACAACACTCGGTA 60.319 55.000 0.00 0.00 35.92 4.02
62 63 2.954753 GCCGCTGAACAACACTCGG 61.955 63.158 0.00 0.00 40.27 4.63
63 64 1.891060 GAGCCGCTGAACAACACTCG 61.891 60.000 0.00 0.00 0.00 4.18
64 65 1.569479 GGAGCCGCTGAACAACACTC 61.569 60.000 0.00 0.00 0.00 3.51
65 66 1.598130 GGAGCCGCTGAACAACACT 60.598 57.895 0.00 0.00 0.00 3.55
67 68 1.891919 GTGGAGCCGCTGAACAACA 60.892 57.895 0.00 0.00 0.00 3.33
68 69 2.617274 GGTGGAGCCGCTGAACAAC 61.617 63.158 0.00 0.00 0.00 3.32
69 70 2.281484 GGTGGAGCCGCTGAACAA 60.281 61.111 0.00 0.00 0.00 2.83
70 71 3.555324 TGGTGGAGCCGCTGAACA 61.555 61.111 0.00 0.00 41.21 3.18
71 72 3.050275 GTGGTGGAGCCGCTGAAC 61.050 66.667 0.00 0.00 44.20 3.18
77 78 1.672356 CAGGAAAGTGGTGGAGCCG 60.672 63.158 0.00 0.00 41.21 5.52
78 79 1.973812 GCAGGAAAGTGGTGGAGCC 60.974 63.158 0.00 0.00 37.90 4.70
79 80 0.610232 ATGCAGGAAAGTGGTGGAGC 60.610 55.000 0.00 0.00 0.00 4.70
80 81 1.542915 CAATGCAGGAAAGTGGTGGAG 59.457 52.381 0.00 0.00 0.00 3.86
81 82 1.144708 TCAATGCAGGAAAGTGGTGGA 59.855 47.619 0.00 0.00 0.00 4.02
82 83 1.270550 GTCAATGCAGGAAAGTGGTGG 59.729 52.381 0.00 0.00 0.00 4.61
84 85 1.145738 AGGTCAATGCAGGAAAGTGGT 59.854 47.619 0.00 0.00 0.00 4.16
85 86 1.915141 AGGTCAATGCAGGAAAGTGG 58.085 50.000 0.00 0.00 0.00 4.00
86 87 2.886523 TCAAGGTCAATGCAGGAAAGTG 59.113 45.455 0.00 0.00 0.00 3.16
88 89 2.886523 TGTCAAGGTCAATGCAGGAAAG 59.113 45.455 0.00 0.00 0.00 2.62
89 90 2.942804 TGTCAAGGTCAATGCAGGAAA 58.057 42.857 0.00 0.00 0.00 3.13
90 91 2.655090 TGTCAAGGTCAATGCAGGAA 57.345 45.000 0.00 0.00 0.00 3.36
91 92 2.040145 TCATGTCAAGGTCAATGCAGGA 59.960 45.455 0.00 0.00 0.00 3.86
92 93 2.439409 TCATGTCAAGGTCAATGCAGG 58.561 47.619 0.00 0.00 0.00 4.85
93 94 4.508461 TTTCATGTCAAGGTCAATGCAG 57.492 40.909 0.00 0.00 0.00 4.41
94 95 4.341806 AGTTTTCATGTCAAGGTCAATGCA 59.658 37.500 0.00 0.00 0.00 3.96
96 97 5.693104 CCAAGTTTTCATGTCAAGGTCAATG 59.307 40.000 0.00 0.00 0.00 2.82
97 98 5.221501 CCCAAGTTTTCATGTCAAGGTCAAT 60.222 40.000 0.00 0.00 0.00 2.57
98 99 4.099266 CCCAAGTTTTCATGTCAAGGTCAA 59.901 41.667 0.00 0.00 0.00 3.18
99 100 3.636300 CCCAAGTTTTCATGTCAAGGTCA 59.364 43.478 0.00 0.00 0.00 4.02
100 101 3.552890 GCCCAAGTTTTCATGTCAAGGTC 60.553 47.826 0.00 0.00 0.00 3.85
103 104 3.383761 GTGCCCAAGTTTTCATGTCAAG 58.616 45.455 0.00 0.00 0.00 3.02
104 105 2.102252 GGTGCCCAAGTTTTCATGTCAA 59.898 45.455 0.00 0.00 0.00 3.18
105 106 1.686052 GGTGCCCAAGTTTTCATGTCA 59.314 47.619 0.00 0.00 0.00 3.58
106 107 1.000843 GGGTGCCCAAGTTTTCATGTC 59.999 52.381 1.66 0.00 35.81 3.06
107 108 1.047801 GGGTGCCCAAGTTTTCATGT 58.952 50.000 1.66 0.00 35.81 3.21
108 109 1.341080 AGGGTGCCCAAGTTTTCATG 58.659 50.000 10.26 0.00 38.92 3.07
109 110 1.970640 GAAGGGTGCCCAAGTTTTCAT 59.029 47.619 10.26 0.00 38.92 2.57
110 111 1.408969 GAAGGGTGCCCAAGTTTTCA 58.591 50.000 10.26 0.00 38.92 2.69
113 114 1.152333 GGGAAGGGTGCCCAAGTTT 60.152 57.895 10.26 0.00 45.31 2.66
115 116 3.966543 CGGGAAGGGTGCCCAAGT 61.967 66.667 10.26 0.00 46.36 3.16
116 117 4.740822 CCGGGAAGGGTGCCCAAG 62.741 72.222 10.26 0.00 46.36 3.61
129 130 1.003812 TGTAATGAAGAACCACCCGGG 59.996 52.381 22.25 22.25 44.81 5.73
130 131 2.483014 TGTAATGAAGAACCACCCGG 57.517 50.000 0.00 0.00 38.77 5.73
144 145 1.767759 GCCAAGGTCCAGCATGTAAT 58.232 50.000 0.00 0.00 0.00 1.89
146 147 1.078497 CGCCAAGGTCCAGCATGTA 60.078 57.895 0.00 0.00 0.00 2.29
147 148 2.202236 ATCGCCAAGGTCCAGCATGT 62.202 55.000 0.00 0.00 0.00 3.21
148 149 0.179048 TATCGCCAAGGTCCAGCATG 60.179 55.000 0.00 0.00 0.00 4.06
150 151 0.546122 AATATCGCCAAGGTCCAGCA 59.454 50.000 0.00 0.00 0.00 4.41
152 153 1.597742 CCAATATCGCCAAGGTCCAG 58.402 55.000 0.00 0.00 0.00 3.86
153 154 0.465460 GCCAATATCGCCAAGGTCCA 60.465 55.000 0.00 0.00 0.00 4.02
154 155 0.465460 TGCCAATATCGCCAAGGTCC 60.465 55.000 0.00 0.00 0.00 4.46
155 156 0.663153 GTGCCAATATCGCCAAGGTC 59.337 55.000 0.00 0.00 0.00 3.85
156 157 1.095228 CGTGCCAATATCGCCAAGGT 61.095 55.000 0.00 0.00 0.00 3.50
157 158 0.813610 TCGTGCCAATATCGCCAAGG 60.814 55.000 0.00 0.00 0.00 3.61
158 159 0.304705 GTCGTGCCAATATCGCCAAG 59.695 55.000 0.00 0.00 0.00 3.61
159 160 0.391793 TGTCGTGCCAATATCGCCAA 60.392 50.000 0.00 0.00 0.00 4.52
160 161 1.087202 GTGTCGTGCCAATATCGCCA 61.087 55.000 0.00 0.00 0.00 5.69
161 162 1.641677 GTGTCGTGCCAATATCGCC 59.358 57.895 0.00 0.00 0.00 5.54
164 165 0.928229 GACCGTGTCGTGCCAATATC 59.072 55.000 0.00 0.00 0.00 1.63
165 166 0.535335 AGACCGTGTCGTGCCAATAT 59.465 50.000 0.00 0.00 37.67 1.28
166 167 0.389296 CAGACCGTGTCGTGCCAATA 60.389 55.000 0.00 0.00 37.67 1.90
168 169 2.279851 CAGACCGTGTCGTGCCAA 60.280 61.111 0.00 0.00 37.67 4.52
169 170 4.961511 GCAGACCGTGTCGTGCCA 62.962 66.667 12.72 0.00 37.67 4.92
181 182 3.365832 CAATAATCATTGTGCGGCAGAC 58.634 45.455 1.18 0.00 37.37 3.51
183 184 2.121786 GCAATAATCATTGTGCGGCAG 58.878 47.619 1.18 0.00 43.03 4.85
184 185 2.206815 GCAATAATCATTGTGCGGCA 57.793 45.000 0.00 0.00 43.03 5.69
190 191 2.620115 CAGAGGGCGCAATAATCATTGT 59.380 45.455 10.83 0.00 43.03 2.71
191 192 2.606308 GCAGAGGGCGCAATAATCATTG 60.606 50.000 10.83 0.00 43.79 2.82
192 193 1.610522 GCAGAGGGCGCAATAATCATT 59.389 47.619 10.83 0.00 0.00 2.57
193 194 1.242076 GCAGAGGGCGCAATAATCAT 58.758 50.000 10.83 0.00 0.00 2.45
194 195 2.706636 GCAGAGGGCGCAATAATCA 58.293 52.632 10.83 0.00 0.00 2.57
205 206 4.379243 ACGCTTGGTCGCAGAGGG 62.379 66.667 0.00 0.00 36.95 4.30
206 207 2.811317 GACGCTTGGTCGCAGAGG 60.811 66.667 0.00 0.00 36.95 3.69
214 215 2.283529 ATGGTCTCCGACGCTTGGT 61.284 57.895 0.00 0.00 32.65 3.67
215 216 1.811266 CATGGTCTCCGACGCTTGG 60.811 63.158 0.00 0.00 32.65 3.61
216 217 2.456119 GCATGGTCTCCGACGCTTG 61.456 63.158 0.00 0.00 32.65 4.01
219 220 2.434185 TTGCATGGTCTCCGACGC 60.434 61.111 0.00 0.00 32.65 5.19
220 221 1.374125 TGTTGCATGGTCTCCGACG 60.374 57.895 0.00 0.00 32.65 5.12
221 222 1.298859 GGTGTTGCATGGTCTCCGAC 61.299 60.000 0.00 0.00 0.00 4.79
222 223 1.003839 GGTGTTGCATGGTCTCCGA 60.004 57.895 0.00 0.00 0.00 4.55
223 224 1.003355 AGGTGTTGCATGGTCTCCG 60.003 57.895 0.00 0.00 0.00 4.63
226 227 2.165167 CAATGAGGTGTTGCATGGTCT 58.835 47.619 0.00 0.00 0.00 3.85
227 228 1.203052 CCAATGAGGTGTTGCATGGTC 59.797 52.381 0.00 0.00 0.00 4.02
228 229 1.259609 CCAATGAGGTGTTGCATGGT 58.740 50.000 0.00 0.00 0.00 3.55
229 230 0.533491 CCCAATGAGGTGTTGCATGG 59.467 55.000 0.00 0.00 34.66 3.66
231 232 1.597797 CGCCCAATGAGGTGTTGCAT 61.598 55.000 0.00 0.00 34.66 3.96
233 234 2.568090 CGCCCAATGAGGTGTTGC 59.432 61.111 0.00 0.00 34.66 4.17
234 235 2.568090 GCGCCCAATGAGGTGTTG 59.432 61.111 0.00 0.00 39.73 3.33
251 252 2.608970 AAATCCCCGTCATCAGGCGG 62.609 60.000 0.82 0.82 46.80 6.13
256 3333 2.710096 GGAGAAAATCCCCGTCATCA 57.290 50.000 0.00 0.00 43.01 3.07
279 3356 2.511659 CATAGGTGATTGAGGCCCATG 58.488 52.381 0.00 0.00 0.00 3.66
351 3960 5.564048 AGACAGTCCTTTATCGTGAGTAC 57.436 43.478 0.00 0.00 0.00 2.73
369 3978 6.478673 CACGATAATGTATGCTGGTTAAGACA 59.521 38.462 0.00 0.00 0.00 3.41
371 3980 6.578944 ACACGATAATGTATGCTGGTTAAGA 58.421 36.000 0.00 0.00 0.00 2.10
416 4025 0.687354 AAGTCCTTCGGAGCACACAT 59.313 50.000 0.00 0.00 29.39 3.21
448 4057 1.525941 GGCAATGGCAAATGCAAACT 58.474 45.000 24.16 0.00 44.32 2.66
548 4174 3.160585 CCAGTTGTGGGCCAGAGA 58.839 61.111 6.40 0.00 40.67 3.10
623 4253 2.027192 TCAGAATCAGGTACCCAGTTGC 60.027 50.000 8.74 0.00 0.00 4.17
651 4281 1.532604 AAGAGATCACGTCCACCGCA 61.533 55.000 0.00 0.00 41.42 5.69
653 4283 1.202582 AGAAAGAGATCACGTCCACCG 59.797 52.381 0.00 0.00 44.03 4.94
680 4319 2.162408 GCTGGGCTGATTAGAAACACAC 59.838 50.000 0.00 0.00 0.00 3.82
704 4343 0.475632 ATGGCCAGGGGGATCGATTA 60.476 55.000 13.05 0.00 35.59 1.75
705 4344 1.363530 AATGGCCAGGGGGATCGATT 61.364 55.000 13.05 0.00 35.59 3.34
740 4379 1.342174 GTTGTTCACGTACCAGAGGGA 59.658 52.381 0.00 0.00 38.05 4.20
759 4398 6.656693 GGATTGATGGGATTAAATCGATCTGT 59.343 38.462 0.00 0.00 40.98 3.41
760 4399 6.656270 TGGATTGATGGGATTAAATCGATCTG 59.344 38.462 0.00 0.00 40.98 2.90
761 4400 6.782986 TGGATTGATGGGATTAAATCGATCT 58.217 36.000 0.00 0.00 40.98 2.75
762 4401 7.337689 TCATGGATTGATGGGATTAAATCGATC 59.662 37.037 0.00 6.57 40.68 3.69
763 4402 7.177184 TCATGGATTGATGGGATTAAATCGAT 58.823 34.615 0.00 0.00 30.51 3.59
764 4403 6.541907 TCATGGATTGATGGGATTAAATCGA 58.458 36.000 0.00 0.00 31.20 3.59
765 4404 6.822667 TCATGGATTGATGGGATTAAATCG 57.177 37.500 0.00 0.00 31.20 3.34
766 4405 8.255905 GGAATCATGGATTGATGGGATTAAATC 58.744 37.037 0.00 0.00 44.51 2.17
767 4406 7.735777 TGGAATCATGGATTGATGGGATTAAAT 59.264 33.333 0.00 0.00 44.51 1.40
768 4407 7.074501 TGGAATCATGGATTGATGGGATTAAA 58.925 34.615 0.00 0.00 44.51 1.52
769 4408 6.622361 TGGAATCATGGATTGATGGGATTAA 58.378 36.000 0.00 0.00 44.51 1.40
802 4445 2.288640 ACAGGAAGAAGAACGTAACGGG 60.289 50.000 0.00 0.00 0.00 5.28
805 4448 4.254402 AGGACAGGAAGAAGAACGTAAC 57.746 45.455 0.00 0.00 0.00 2.50
893 4541 1.135699 CATCGGCATTGTTTCGCAGC 61.136 55.000 0.00 0.00 0.00 5.25
925 4573 4.962155 AGAAGACCAAGGTTAACAGACAG 58.038 43.478 8.10 0.00 0.00 3.51
927 4575 5.612351 AGAAGAAGACCAAGGTTAACAGAC 58.388 41.667 8.10 0.00 0.00 3.51
979 4648 0.601311 GCGGCGGCAGATTTCTAGAT 60.601 55.000 9.78 0.00 39.62 1.98
985 4654 3.520862 CATGGCGGCGGCAGATTT 61.521 61.111 37.95 21.31 42.43 2.17
1182 4851 1.641577 GATGGGTGTGTAAGTCTCGC 58.358 55.000 0.00 0.00 0.00 5.03
1183 4852 1.469251 CGGATGGGTGTGTAAGTCTCG 60.469 57.143 0.00 0.00 0.00 4.04
1184 4853 1.134788 CCGGATGGGTGTGTAAGTCTC 60.135 57.143 0.00 0.00 0.00 3.36
1185 4854 0.902531 CCGGATGGGTGTGTAAGTCT 59.097 55.000 0.00 0.00 0.00 3.24
1186 4855 3.453559 CCGGATGGGTGTGTAAGTC 57.546 57.895 0.00 0.00 0.00 3.01
1251 4926 4.546637 GACGACAACGACGATGGT 57.453 55.556 10.02 0.00 42.66 3.55
1470 5145 1.002011 GTCCTTGAGGTTCAGCCCC 60.002 63.158 0.00 0.00 38.26 5.80
1563 5238 0.108615 ACTCGATCACCTTCTTGGCG 60.109 55.000 0.00 0.00 40.22 5.69
1593 5268 2.083835 TACCTAGCTGGCGCGATTCC 62.084 60.000 12.10 1.12 42.32 3.01
1624 5301 5.186996 TCTTCTTTGGATGAACTTGCAAC 57.813 39.130 0.00 0.00 0.00 4.17
1657 5334 9.636879 AGTAAAAAGAAGATAACCTAAGACGAC 57.363 33.333 0.00 0.00 0.00 4.34
1710 5398 4.098807 TGCTGATAAATTGCTGTGCATCAT 59.901 37.500 0.00 0.00 38.76 2.45
1714 5402 2.557490 TGTGCTGATAAATTGCTGTGCA 59.443 40.909 0.00 0.00 36.47 4.57
1749 5437 4.901881 GTGTGGACGAAACAAATAAGTTCG 59.098 41.667 3.68 3.68 0.00 3.95
1752 5440 5.757886 CATGTGTGGACGAAACAAATAAGT 58.242 37.500 0.00 0.00 0.00 2.24
1775 5463 6.366061 GTGGAATTTACTGCAGATGAAAAACC 59.634 38.462 23.35 20.37 0.00 3.27
1776 5464 6.366061 GGTGGAATTTACTGCAGATGAAAAAC 59.634 38.462 23.35 13.74 0.00 2.43
1777 5465 6.041409 TGGTGGAATTTACTGCAGATGAAAAA 59.959 34.615 23.35 12.21 0.00 1.94
1778 5466 5.538053 TGGTGGAATTTACTGCAGATGAAAA 59.462 36.000 23.35 14.60 0.00 2.29
1781 5469 4.299586 TGGTGGAATTTACTGCAGATGA 57.700 40.909 23.35 5.37 0.00 2.92
1782 5470 5.389859 TTTGGTGGAATTTACTGCAGATG 57.610 39.130 23.35 0.00 0.00 2.90
1783 5471 6.610075 ATTTTGGTGGAATTTACTGCAGAT 57.390 33.333 23.35 7.41 0.00 2.90
1784 5472 6.222389 CAATTTTGGTGGAATTTACTGCAGA 58.778 36.000 23.35 0.00 0.00 4.26
1785 5473 5.106987 GCAATTTTGGTGGAATTTACTGCAG 60.107 40.000 13.48 13.48 0.00 4.41
1787 5475 4.754114 TGCAATTTTGGTGGAATTTACTGC 59.246 37.500 0.00 0.00 0.00 4.40
1788 5476 6.222389 TCTGCAATTTTGGTGGAATTTACTG 58.778 36.000 0.00 0.00 0.00 2.74
1789 5477 6.418057 TCTGCAATTTTGGTGGAATTTACT 57.582 33.333 0.00 0.00 0.00 2.24
1790 5478 8.819974 CATATCTGCAATTTTGGTGGAATTTAC 58.180 33.333 0.00 0.00 0.00 2.01
1791 5479 8.538701 ACATATCTGCAATTTTGGTGGAATTTA 58.461 29.630 0.00 0.00 0.00 1.40
1797 5487 6.164876 TGAAACATATCTGCAATTTTGGTGG 58.835 36.000 0.00 0.00 0.00 4.61
1816 5509 7.971455 ACAAATATTCTTACGCCTACTGAAAC 58.029 34.615 0.00 0.00 0.00 2.78
1817 5510 9.826574 ATACAAATATTCTTACGCCTACTGAAA 57.173 29.630 0.00 0.00 0.00 2.69
1818 5511 9.826574 AATACAAATATTCTTACGCCTACTGAA 57.173 29.630 0.00 0.00 0.00 3.02
1859 5552 2.667470 AGAGCCATCTTCTTACGCCTA 58.333 47.619 0.00 0.00 28.57 3.93
1861 5554 1.936547 CAAGAGCCATCTTCTTACGCC 59.063 52.381 0.00 0.00 44.15 5.68
1862 5555 1.328986 GCAAGAGCCATCTTCTTACGC 59.671 52.381 0.00 0.00 44.15 4.42
1863 5556 2.898705 AGCAAGAGCCATCTTCTTACG 58.101 47.619 0.00 0.00 44.15 3.18
1864 5557 3.181502 GCAAGCAAGAGCCATCTTCTTAC 60.182 47.826 0.00 0.00 44.15 2.34
1865 5558 3.012518 GCAAGCAAGAGCCATCTTCTTA 58.987 45.455 0.00 0.00 44.15 2.10
1867 5560 1.461559 GCAAGCAAGAGCCATCTTCT 58.538 50.000 0.00 0.00 44.15 2.85
1868 5561 0.098376 CGCAAGCAAGAGCCATCTTC 59.902 55.000 0.00 0.00 44.15 2.87
1871 5564 1.986575 GACCGCAAGCAAGAGCCATC 61.987 60.000 0.00 0.00 43.56 3.51
1874 5567 3.793144 CGACCGCAAGCAAGAGCC 61.793 66.667 0.00 0.00 43.56 4.70
1875 5568 3.016474 GACGACCGCAAGCAAGAGC 62.016 63.158 0.00 0.00 42.56 4.09
1876 5569 0.946221 AAGACGACCGCAAGCAAGAG 60.946 55.000 0.00 0.00 0.00 2.85
1879 5572 2.307309 CGAAGACGACCGCAAGCAA 61.307 57.895 0.00 0.00 42.66 3.91
1880 5573 2.733218 CGAAGACGACCGCAAGCA 60.733 61.111 0.00 0.00 42.66 3.91
1881 5574 3.479269 CCGAAGACGACCGCAAGC 61.479 66.667 0.00 0.00 42.66 4.01
1882 5575 0.387622 TAACCGAAGACGACCGCAAG 60.388 55.000 0.00 0.00 42.66 4.01
1883 5576 0.244450 ATAACCGAAGACGACCGCAA 59.756 50.000 0.00 0.00 42.66 4.85
1884 5577 0.179156 GATAACCGAAGACGACCGCA 60.179 55.000 0.00 0.00 42.66 5.69
1885 5578 0.869028 GGATAACCGAAGACGACCGC 60.869 60.000 0.00 0.00 42.66 5.68
1886 5579 0.737219 AGGATAACCGAAGACGACCG 59.263 55.000 0.00 0.00 42.66 4.79
1887 5580 2.955477 AAGGATAACCGAAGACGACC 57.045 50.000 0.00 0.00 42.66 4.79
1889 5582 4.261578 ACAAAAGGATAACCGAAGACGA 57.738 40.909 0.00 0.00 42.66 4.20
1890 5583 6.657836 ATAACAAAAGGATAACCGAAGACG 57.342 37.500 0.00 0.00 41.83 4.18
1891 5584 9.983804 CTAAATAACAAAAGGATAACCGAAGAC 57.016 33.333 0.00 0.00 41.83 3.01
1916 5939 9.377312 GCATTAGATCAAGAGAAGAACTTTACT 57.623 33.333 0.00 0.00 0.00 2.24
1917 5940 9.377312 AGCATTAGATCAAGAGAAGAACTTTAC 57.623 33.333 0.00 0.00 0.00 2.01
1919 5942 8.099537 TCAGCATTAGATCAAGAGAAGAACTTT 58.900 33.333 0.00 0.00 0.00 2.66
1920 5943 7.619050 TCAGCATTAGATCAAGAGAAGAACTT 58.381 34.615 0.00 0.00 0.00 2.66
1921 5944 7.180322 TCAGCATTAGATCAAGAGAAGAACT 57.820 36.000 0.00 0.00 0.00 3.01
1923 5946 6.482641 GCATCAGCATTAGATCAAGAGAAGAA 59.517 38.462 0.00 0.00 41.58 2.52
1925 5948 6.230849 GCATCAGCATTAGATCAAGAGAAG 57.769 41.667 0.00 0.00 41.58 2.85
1959 5982 5.868801 CCCGAATAAAATTGTTTGTGCTGAT 59.131 36.000 0.00 0.00 0.00 2.90
1960 5983 5.226396 CCCGAATAAAATTGTTTGTGCTGA 58.774 37.500 0.00 0.00 0.00 4.26
1961 5984 4.388469 CCCCGAATAAAATTGTTTGTGCTG 59.612 41.667 0.00 0.00 0.00 4.41
1962 5985 4.565022 CCCCGAATAAAATTGTTTGTGCT 58.435 39.130 0.00 0.00 0.00 4.40
1963 5986 3.124466 GCCCCGAATAAAATTGTTTGTGC 59.876 43.478 0.00 0.00 0.00 4.57
1964 5987 4.388469 CAGCCCCGAATAAAATTGTTTGTG 59.612 41.667 0.00 0.00 0.00 3.33
1965 5988 4.039852 ACAGCCCCGAATAAAATTGTTTGT 59.960 37.500 0.00 0.00 0.00 2.83
1966 5989 4.565022 ACAGCCCCGAATAAAATTGTTTG 58.435 39.130 0.00 0.00 0.00 2.93
1969 5992 4.882842 AAACAGCCCCGAATAAAATTGT 57.117 36.364 0.00 0.00 0.00 2.71
1970 5993 4.994217 ACAAAACAGCCCCGAATAAAATTG 59.006 37.500 0.00 0.00 0.00 2.32
1972 5995 4.882842 ACAAAACAGCCCCGAATAAAAT 57.117 36.364 0.00 0.00 0.00 1.82
1973 5996 4.674281 AACAAAACAGCCCCGAATAAAA 57.326 36.364 0.00 0.00 0.00 1.52
1975 5998 4.141914 ACAAAACAAAACAGCCCCGAATAA 60.142 37.500 0.00 0.00 0.00 1.40
1976 5999 3.385111 ACAAAACAAAACAGCCCCGAATA 59.615 39.130 0.00 0.00 0.00 1.75
1977 6000 2.169561 ACAAAACAAAACAGCCCCGAAT 59.830 40.909 0.00 0.00 0.00 3.34
1979 6002 1.135333 GACAAAACAAAACAGCCCCGA 59.865 47.619 0.00 0.00 0.00 5.14
1981 6004 1.208293 TGGACAAAACAAAACAGCCCC 59.792 47.619 0.00 0.00 0.00 5.80
1982 6005 2.276201 GTGGACAAAACAAAACAGCCC 58.724 47.619 0.00 0.00 0.00 5.19
1985 6008 6.200665 CCATATGTGTGGACAAAACAAAACAG 59.799 38.462 1.24 0.00 42.02 3.16
1987 6010 6.045955 ACCATATGTGTGGACAAAACAAAAC 58.954 36.000 2.59 0.00 42.02 2.43
1988 6011 6.227298 ACCATATGTGTGGACAAAACAAAA 57.773 33.333 2.59 0.00 42.02 2.44
2010 6178 9.515020 TGTTGAAATTACACTGAAAATGAGAAC 57.485 29.630 0.00 0.00 0.00 3.01
2034 6202 6.024552 ACCGAAACATATCTGCAATTTTGT 57.975 33.333 0.00 0.00 0.00 2.83
2060 6228 8.898761 TGGAACGCAATACAAATATTCTTATGT 58.101 29.630 0.00 0.00 0.00 2.29
2083 6251 0.109365 CACGGCGATGCAAATTTGGA 60.109 50.000 16.62 17.40 0.00 3.53
2084 6252 1.077645 CCACGGCGATGCAAATTTGG 61.078 55.000 16.62 2.91 0.00 3.28
2097 6265 4.412207 GTTCACTGAAATATTTCCACGGC 58.588 43.478 22.42 7.58 36.36 5.68
2164 6332 8.006298 TGACTTTGACTGAAATACAACCAAAT 57.994 30.769 0.00 0.00 33.17 2.32
2172 6340 6.231211 TCTCCCTTGACTTTGACTGAAATAC 58.769 40.000 0.00 0.00 0.00 1.89
2237 6405 2.159114 TCGATCATCGCTGAAATCACCA 60.159 45.455 0.80 0.00 40.21 4.17
2329 6508 8.687292 ATAATGCGCCAATGATATTCTATCAT 57.313 30.769 4.18 4.22 40.20 2.45
2432 6614 7.553760 ACCGGTTGTCTAAGTTCTTAAAGAAAA 59.446 33.333 0.00 0.00 35.75 2.29
2439 6621 8.907222 AAAATAACCGGTTGTCTAAGTTCTTA 57.093 30.769 30.08 4.97 0.00 2.10
2453 6635 2.774687 AGTGCGAGAAAAATAACCGGT 58.225 42.857 0.00 0.00 0.00 5.28
2454 6636 4.932268 TTAGTGCGAGAAAAATAACCGG 57.068 40.909 0.00 0.00 0.00 5.28
2466 6650 4.092968 AGTTTTAAGGCGATTTAGTGCGAG 59.907 41.667 0.00 0.00 0.00 5.03
2468 6652 4.088648 CAGTTTTAAGGCGATTTAGTGCG 58.911 43.478 0.00 0.00 0.00 5.34
2548 6732 3.650298 AATGGCTGCCGCACCATCT 62.650 57.895 20.76 12.30 46.04 2.90
2572 6756 4.382040 CCGAGATCAGCCTGAAAGTTCTTA 60.382 45.833 0.00 0.00 0.00 2.10
2602 6786 5.105513 TCAGTGTAAATCTACCTCATTGCGA 60.106 40.000 0.00 0.00 0.00 5.10
2608 6792 6.493802 ACAGTTCTCAGTGTAAATCTACCTCA 59.506 38.462 0.00 0.00 34.53 3.86
2796 6981 2.508716 AGTCCCATACTCCTCGAGTGTA 59.491 50.000 12.31 13.89 43.30 2.90
3148 7333 9.920133 TTCAACAGCACATAAAAGCATATTTAA 57.080 25.926 0.00 0.00 0.00 1.52
3578 7763 0.998928 TGGCCCTTGAAATGCCTCTA 59.001 50.000 0.00 0.00 45.56 2.43
3717 7902 6.747414 AAGGTACACAGAGCCAATATCATA 57.253 37.500 0.00 0.00 0.00 2.15
3782 8028 6.122964 CCAATGATGATCATGCCTCATATCT 58.877 40.000 14.30 0.00 37.15 1.98
3800 8046 5.033589 ACAAAAGAAAACATGGCCAATGA 57.966 34.783 10.96 0.00 38.72 2.57
4282 8534 1.375326 GGGCTCCGGAACTTTCACT 59.625 57.895 5.23 0.00 0.00 3.41
4450 8702 5.965922 TGACCAACTACTCAGTATGTGATG 58.034 41.667 0.00 0.00 37.40 3.07
4477 8773 2.855963 CAACACTGAAGTTTGCAAGCAG 59.144 45.455 16.04 15.37 0.00 4.24
4478 8774 2.417107 CCAACACTGAAGTTTGCAAGCA 60.417 45.455 16.04 4.84 0.00 3.91
4524 8820 6.202954 ACAAAATAGTCTGTCAGGAAACTTCG 59.797 38.462 0.00 0.00 40.21 3.79
4531 8828 5.129634 TGCAAACAAAATAGTCTGTCAGGA 58.870 37.500 0.00 0.00 0.00 3.86
4687 8987 8.417780 AAATTCAGATTCAGATCTTGTAGACG 57.582 34.615 0.00 0.00 40.67 4.18
4688 8988 9.985318 CAAAATTCAGATTCAGATCTTGTAGAC 57.015 33.333 0.00 0.00 40.67 2.59
4715 9046 2.630098 TCAGGTAGCTGTCATCATAGCC 59.370 50.000 20.76 0.00 40.76 3.93
4831 9168 6.652481 CAGGTTGACTCTTGTTGAATCATAGT 59.348 38.462 0.00 0.00 30.57 2.12
5219 9601 0.583438 CGAATATGAAGCTGGCCACG 59.417 55.000 0.00 0.00 0.00 4.94
5294 9684 3.145551 GCCTCCTCCGAGCCGTAA 61.146 66.667 0.00 0.00 34.49 3.18
5390 9780 2.522436 CCGCCCTCCGTATACCCA 60.522 66.667 0.00 0.00 34.38 4.51
5456 9846 2.018544 CGCCTTCTCGATCTCGTCT 58.981 57.895 0.00 0.00 40.80 4.18
5789 10179 0.829990 TCACCTCCGCAAGCATGATA 59.170 50.000 0.00 0.00 0.00 2.15
5906 10296 3.011517 ATGGCCCTTCTCAGCGGT 61.012 61.111 0.00 0.00 0.00 5.68
6032 10422 2.573869 GAGTCGCTGTGCCTGCTA 59.426 61.111 0.00 0.00 0.00 3.49
6137 10527 6.673978 ACTATGCATCTGCTTTATCCCCTATA 59.326 38.462 0.19 0.00 42.66 1.31
6138 10528 4.942363 ATGCATCTGCTTTATCCCCTAT 57.058 40.909 3.53 0.00 42.66 2.57
6139 10529 4.846367 ACTATGCATCTGCTTTATCCCCTA 59.154 41.667 0.19 0.00 42.66 3.53
6147 10537 7.391554 TCTGAAACTTAACTATGCATCTGCTTT 59.608 33.333 0.19 0.00 42.66 3.51
6154 10544 5.008019 CGGCATCTGAAACTTAACTATGCAT 59.992 40.000 3.79 3.79 39.91 3.96
6189 10582 3.192422 TCATTCACCGCTTACCAAAATGG 59.808 43.478 0.00 0.00 45.02 3.16
6203 10596 5.128499 TCAGGAGATCTCTCTTTCATTCACC 59.872 44.000 21.81 1.49 42.48 4.02
6204 10597 6.219417 TCAGGAGATCTCTCTTTCATTCAC 57.781 41.667 21.81 1.18 42.48 3.18
6277 10670 5.125417 GGAAAATCATCGAAGTTTGATCCCA 59.875 40.000 2.33 0.00 32.30 4.37
6278 10671 5.358160 AGGAAAATCATCGAAGTTTGATCCC 59.642 40.000 2.33 3.24 32.30 3.85
6283 10676 5.927030 TCGAAGGAAAATCATCGAAGTTTG 58.073 37.500 0.00 0.00 40.92 2.93
6290 10683 3.060272 CGGTGATCGAAGGAAAATCATCG 60.060 47.826 1.66 1.66 44.58 3.84
6293 10686 2.235155 TCCGGTGATCGAAGGAAAATCA 59.765 45.455 0.00 0.00 42.43 2.57
6311 10704 6.092092 TGTCAAGTTGCAATATGATTTTCCG 58.908 36.000 16.92 0.00 0.00 4.30
6418 10811 5.894964 GGGTTCTTTTGGTTGGCCTATATTA 59.105 40.000 3.32 0.00 35.27 0.98
6491 10884 4.242475 TCTGTACCTTCTTAACATGCGTG 58.758 43.478 3.82 3.82 0.00 5.34
6519 10912 1.991167 TCCAACCTAATCGGCGGGT 60.991 57.895 7.21 2.81 35.61 5.28
6550 10943 2.162408 GTCCCAATCCGAAGCAAAAGAG 59.838 50.000 0.00 0.00 0.00 2.85
6666 11059 6.173339 TGGAACTGAAAATCTCATGTAGGTC 58.827 40.000 0.00 0.00 32.14 3.85
6715 11113 8.488651 AACAAGTTTGGATTATACCTTCGTAG 57.511 34.615 0.00 0.00 0.00 3.51
6736 11134 0.036388 GTGGGGATCGAGCAGAACAA 60.036 55.000 1.84 0.00 0.00 2.83
6771 11169 9.720769 TTCTTTCCTATTTCCAAGTAACTACAG 57.279 33.333 0.00 0.00 0.00 2.74
6775 11173 9.416284 TGTTTTCTTTCCTATTTCCAAGTAACT 57.584 29.630 0.00 0.00 0.00 2.24
6812 11211 4.099266 TCCACTGAATTGGTTCAACTTTGG 59.901 41.667 0.00 0.00 43.39 3.28
6849 11248 0.034477 AGTGGGAGCCAATAAACCCG 60.034 55.000 0.00 0.00 44.70 5.28
6858 11257 1.565390 CCAAGGATGAGTGGGAGCCA 61.565 60.000 0.00 0.00 0.00 4.75
6948 11347 9.315363 TGGAAACAAGTTATATTTACCATTGGT 57.685 29.630 13.94 13.94 37.22 3.67
7033 11432 3.339547 CAACCGTCTTGGATGGGTT 57.660 52.632 10.10 5.69 42.60 4.11
7051 11450 1.402968 ACTCATGTGCATCGCATTTCC 59.597 47.619 0.00 0.00 41.91 3.13


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.