Multiple sequence alignment - TraesCS4B01G082600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G082600 chr4B 100.000 3418 0 0 1 3418 81366493 81363076 0.000000e+00 6312.0
1 TraesCS4B01G082600 chr4B 81.447 539 68 19 192 708 139343976 139344504 2.450000e-111 412.0
2 TraesCS4B01G082600 chr4B 83.732 418 50 15 1499 1910 669494352 669493947 2.490000e-101 379.0
3 TraesCS4B01G082600 chr4B 83.493 418 51 15 1499 1910 668535280 668534875 1.160000e-99 374.0
4 TraesCS4B01G082600 chr4B 83.014 418 53 15 1499 1910 668916081 668915676 2.510000e-96 363.0
5 TraesCS4B01G082600 chr4B 90.580 138 12 1 1003 1140 41177358 41177494 7.530000e-42 182.0
6 TraesCS4B01G082600 chr4B 96.226 106 4 0 1003 1108 563785546 563785651 1.260000e-39 174.0
7 TraesCS4B01G082600 chr4B 98.182 55 1 0 3104 3158 81363336 81363282 2.810000e-16 97.1
8 TraesCS4B01G082600 chr4B 98.182 55 1 0 3158 3212 81363390 81363336 2.810000e-16 97.1
9 TraesCS4B01G082600 chr4B 89.062 64 7 0 3039 3102 519813196 519813259 2.830000e-11 80.5
10 TraesCS4B01G082600 chr4A 84.260 2033 153 69 1187 3157 542265813 542263886 0.000000e+00 1827.0
11 TraesCS4B01G082600 chr4A 91.031 446 23 6 764 1197 542266336 542265896 1.370000e-163 586.0
12 TraesCS4B01G082600 chr4A 96.226 106 4 0 1003 1108 16206623 16206518 1.260000e-39 174.0
13 TraesCS4B01G082600 chr4A 97.297 37 1 0 2885 2921 193944512 193944476 2.850000e-06 63.9
14 TraesCS4B01G082600 chr4D 84.877 972 79 35 1183 2127 54806688 54807618 0.000000e+00 918.0
15 TraesCS4B01G082600 chr4D 86.320 826 72 19 2228 3029 54807679 54808487 0.000000e+00 861.0
16 TraesCS4B01G082600 chr4D 90.476 441 22 7 764 1187 54806171 54806608 6.400000e-157 564.0
17 TraesCS4B01G082600 chr4D 83.500 600 71 17 129 708 417930752 417930161 5.020000e-148 534.0
18 TraesCS4B01G082600 chr4D 96.226 106 4 0 1003 1108 450502306 450502411 1.260000e-39 174.0
19 TraesCS4B01G082600 chr7A 80.606 1222 162 50 1501 2694 691129738 691130912 0.000000e+00 874.0
20 TraesCS4B01G082600 chr7A 91.429 140 9 3 1003 1141 691129113 691129250 4.500000e-44 189.0
21 TraesCS4B01G082600 chr7B 79.829 1170 152 49 1570 2715 678029669 678030778 0.000000e+00 776.0
22 TraesCS4B01G082600 chr7B 82.243 749 74 19 2 706 161632717 161631984 2.940000e-165 592.0
23 TraesCS4B01G082600 chr7B 95.276 127 6 0 3292 3418 99228625 99228751 5.780000e-48 202.0
24 TraesCS4B01G082600 chr7B 91.367 139 10 2 1003 1141 678028785 678028921 4.500000e-44 189.0
25 TraesCS4B01G082600 chr7B 91.935 62 5 0 3042 3103 102232012 102231951 1.690000e-13 87.9
26 TraesCS4B01G082600 chr7B 86.667 75 9 1 2958 3032 698649642 698649569 7.860000e-12 82.4
27 TraesCS4B01G082600 chr7B 84.615 78 10 2 2958 3034 166901966 166901890 3.660000e-10 76.8
28 TraesCS4B01G082600 chr7B 97.368 38 1 0 2884 2921 498089137 498089100 7.920000e-07 65.8
29 TraesCS4B01G082600 chr1B 84.282 738 72 26 2 709 579005850 579006573 0.000000e+00 680.0
30 TraesCS4B01G082600 chr1B 81.635 746 86 23 2 708 383833748 383834481 3.830000e-159 571.0
31 TraesCS4B01G082600 chr1B 99.130 115 1 0 3304 3418 72803455 72803569 1.240000e-49 207.0
32 TraesCS4B01G082600 chr1B 96.721 122 4 0 3297 3418 6249492 6249613 1.610000e-48 204.0
33 TraesCS4B01G082600 chr1B 98.261 115 2 0 3304 3418 72770569 72770683 5.780000e-48 202.0
34 TraesCS4B01G082600 chr1B 89.286 56 4 2 2988 3042 251762765 251762819 6.120000e-08 69.4
35 TraesCS4B01G082600 chr7D 81.954 737 82 34 2 706 56395037 56394320 8.220000e-161 577.0
36 TraesCS4B01G082600 chr7D 87.021 470 51 8 2247 2708 598614555 598615022 3.910000e-144 521.0
37 TraesCS4B01G082600 chr7D 80.816 662 83 32 77 710 554409655 554410300 2.390000e-131 479.0
38 TraesCS4B01G082600 chr7D 92.908 141 6 4 1003 1141 598613048 598613186 5.780000e-48 202.0
39 TraesCS4B01G082600 chr3D 86.105 475 53 11 2 465 475867091 475866619 1.830000e-137 499.0
40 TraesCS4B01G082600 chr3D 97.500 120 2 1 3299 3418 341474271 341474153 1.610000e-48 204.0
41 TraesCS4B01G082600 chr3D 90.667 75 6 1 3039 3113 373615864 373615937 7.810000e-17 99.0
42 TraesCS4B01G082600 chr2D 80.670 657 93 24 77 709 61007280 61007926 2.390000e-131 479.0
43 TraesCS4B01G082600 chr2D 98.246 114 2 0 3305 3418 590029331 590029218 2.080000e-47 200.0
44 TraesCS4B01G082600 chr2D 91.304 138 11 1 1003 1140 29677238 29677102 1.620000e-43 187.0
45 TraesCS4B01G082600 chr2D 77.027 148 14 11 2885 3032 312629728 312629601 2.200000e-07 67.6
46 TraesCS4B01G082600 chr2D 95.238 42 1 1 2881 2921 7294714 7294755 7.920000e-07 65.8
47 TraesCS4B01G082600 chr6B 80.506 672 89 25 1 644 87747181 87747838 8.580000e-131 477.0
48 TraesCS4B01G082600 chr6B 97.458 118 3 0 3301 3418 576209220 576209103 5.780000e-48 202.0
49 TraesCS4B01G082600 chr6B 91.525 59 5 0 3049 3107 286578172 286578230 7.860000e-12 82.4
50 TraesCS4B01G082600 chr5B 83.732 418 50 15 1499 1910 499899047 499898642 2.490000e-101 379.0
51 TraesCS4B01G082600 chr5B 97.143 35 1 0 3214 3248 546848340 546848306 3.680000e-05 60.2
52 TraesCS4B01G082600 chr2B 77.593 540 68 29 215 706 788242182 788242716 9.340000e-71 278.0
53 TraesCS4B01G082600 chr2B 93.204 103 4 1 2716 2818 206749221 206749320 7.640000e-32 148.0
54 TraesCS4B01G082600 chr2B 92.233 103 5 1 2716 2818 361639589 361639490 3.560000e-30 143.0
55 TraesCS4B01G082600 chr2B 86.301 73 8 2 2962 3033 593295420 593295349 1.020000e-10 78.7
56 TraesCS4B01G082600 chr3B 77.925 453 56 19 295 706 643990952 643990503 3.410000e-60 243.0
57 TraesCS4B01G082600 chr3B 97.479 119 3 0 3300 3418 621476201 621476083 1.610000e-48 204.0
58 TraesCS4B01G082600 chr3B 98.246 114 2 0 3305 3418 798553147 798553034 2.080000e-47 200.0
59 TraesCS4B01G082600 chr3B 94.545 55 3 0 3049 3103 352012603 352012657 6.080000e-13 86.1
60 TraesCS4B01G082600 chr5D 90.580 138 12 1 1003 1140 12360763 12360899 7.530000e-42 182.0
61 TraesCS4B01G082600 chr5D 91.045 67 5 1 3042 3108 325889072 325889137 4.700000e-14 89.8
62 TraesCS4B01G082600 chr5D 86.957 69 8 1 3039 3106 448938695 448938763 3.660000e-10 76.8
63 TraesCS4B01G082600 chr5D 93.182 44 3 0 2878 2921 188333105 188333062 7.920000e-07 65.8
64 TraesCS4B01G082600 chr5D 89.362 47 4 1 2884 2929 397771035 397771081 1.320000e-04 58.4
65 TraesCS4B01G082600 chr1D 89.855 138 13 1 1003 1140 359551029 359550893 3.510000e-40 176.0
66 TraesCS4B01G082600 chr1D 84.932 73 9 2 2962 3033 176727264 176727335 4.730000e-09 73.1
67 TraesCS4B01G082600 chr6A 94.737 57 3 0 3050 3106 514704927 514704871 4.700000e-14 89.8
68 TraesCS4B01G082600 chr6D 81.818 99 16 2 2936 3033 175218409 175218312 7.860000e-12 82.4
69 TraesCS4B01G082600 chr2A 100.000 36 0 0 2886 2921 43552651 43552686 2.200000e-07 67.6
70 TraesCS4B01G082600 chr3A 100.000 28 0 0 3214 3241 19471054 19471081 6.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G082600 chr4B 81363076 81366493 3417 True 2168.733333 6312 98.788000 1 3418 3 chr4B.!!$R4 3417
1 TraesCS4B01G082600 chr4B 139343976 139344504 528 False 412.000000 412 81.447000 192 708 1 chr4B.!!$F2 516
2 TraesCS4B01G082600 chr4A 542263886 542266336 2450 True 1206.500000 1827 87.645500 764 3157 2 chr4A.!!$R3 2393
3 TraesCS4B01G082600 chr4D 54806171 54808487 2316 False 781.000000 918 87.224333 764 3029 3 chr4D.!!$F2 2265
4 TraesCS4B01G082600 chr4D 417930161 417930752 591 True 534.000000 534 83.500000 129 708 1 chr4D.!!$R1 579
5 TraesCS4B01G082600 chr7A 691129113 691130912 1799 False 531.500000 874 86.017500 1003 2694 2 chr7A.!!$F1 1691
6 TraesCS4B01G082600 chr7B 161631984 161632717 733 True 592.000000 592 82.243000 2 706 1 chr7B.!!$R2 704
7 TraesCS4B01G082600 chr7B 678028785 678030778 1993 False 482.500000 776 85.598000 1003 2715 2 chr7B.!!$F2 1712
8 TraesCS4B01G082600 chr1B 579005850 579006573 723 False 680.000000 680 84.282000 2 709 1 chr1B.!!$F6 707
9 TraesCS4B01G082600 chr1B 383833748 383834481 733 False 571.000000 571 81.635000 2 708 1 chr1B.!!$F5 706
10 TraesCS4B01G082600 chr7D 56394320 56395037 717 True 577.000000 577 81.954000 2 706 1 chr7D.!!$R1 704
11 TraesCS4B01G082600 chr7D 554409655 554410300 645 False 479.000000 479 80.816000 77 710 1 chr7D.!!$F1 633
12 TraesCS4B01G082600 chr7D 598613048 598615022 1974 False 361.500000 521 89.964500 1003 2708 2 chr7D.!!$F2 1705
13 TraesCS4B01G082600 chr2D 61007280 61007926 646 False 479.000000 479 80.670000 77 709 1 chr2D.!!$F2 632
14 TraesCS4B01G082600 chr6B 87747181 87747838 657 False 477.000000 477 80.506000 1 644 1 chr6B.!!$F1 643
15 TraesCS4B01G082600 chr2B 788242182 788242716 534 False 278.000000 278 77.593000 215 706 1 chr2B.!!$F2 491

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
920 1086 0.175989 CCAGTTTCTCTACCCCTCGC 59.824 60.0 0.0 0.0 0.0 5.03 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2769 3601 1.02813 CGATCAGGAGAGCTGTAGCA 58.972 55.0 6.65 0.0 45.16 3.49 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
160 162 3.353836 GCAAAACCGCGCCTCTCA 61.354 61.111 0.00 0.00 0.00 3.27
375 400 1.247567 ATCAAAACCGTGCCTCTTGG 58.752 50.000 0.00 0.00 0.00 3.61
443 508 0.947244 CCTCTCGCAAAAGCACAACT 59.053 50.000 0.00 0.00 0.00 3.16
454 524 4.758692 CACAACTGTGCCTCTCGT 57.241 55.556 0.00 0.00 39.39 4.18
529 643 2.211468 AAATCCTGGGGAAGACCGGC 62.211 60.000 0.00 0.00 41.60 6.13
656 810 1.081175 CTGAGAGCGCGTCAAGTGA 60.081 57.895 15.16 0.00 0.00 3.41
710 864 4.201822 GCTCGTTTATTAGTTGCTCCCAAG 60.202 45.833 0.00 0.00 0.00 3.61
711 865 5.155278 TCGTTTATTAGTTGCTCCCAAGA 57.845 39.130 0.00 0.00 0.00 3.02
712 866 5.553123 TCGTTTATTAGTTGCTCCCAAGAA 58.447 37.500 0.00 0.00 0.00 2.52
713 867 5.998981 TCGTTTATTAGTTGCTCCCAAGAAA 59.001 36.000 0.00 0.00 0.00 2.52
714 868 6.487331 TCGTTTATTAGTTGCTCCCAAGAAAA 59.513 34.615 0.00 0.00 0.00 2.29
715 869 7.013464 TCGTTTATTAGTTGCTCCCAAGAAAAA 59.987 33.333 0.00 0.00 0.00 1.94
716 870 7.326063 CGTTTATTAGTTGCTCCCAAGAAAAAG 59.674 37.037 0.00 0.00 0.00 2.27
717 871 5.728637 ATTAGTTGCTCCCAAGAAAAAGG 57.271 39.130 0.00 0.00 0.00 3.11
718 872 3.312736 AGTTGCTCCCAAGAAAAAGGA 57.687 42.857 0.00 0.00 0.00 3.36
719 873 3.642141 AGTTGCTCCCAAGAAAAAGGAA 58.358 40.909 0.00 0.00 0.00 3.36
720 874 3.638627 AGTTGCTCCCAAGAAAAAGGAAG 59.361 43.478 0.00 0.00 0.00 3.46
721 875 3.593442 TGCTCCCAAGAAAAAGGAAGA 57.407 42.857 0.00 0.00 0.00 2.87
722 876 3.490348 TGCTCCCAAGAAAAAGGAAGAG 58.510 45.455 0.00 0.00 0.00 2.85
723 877 3.138283 TGCTCCCAAGAAAAAGGAAGAGA 59.862 43.478 0.00 0.00 0.00 3.10
724 878 4.145052 GCTCCCAAGAAAAAGGAAGAGAA 58.855 43.478 0.00 0.00 0.00 2.87
725 879 4.584743 GCTCCCAAGAAAAAGGAAGAGAAA 59.415 41.667 0.00 0.00 0.00 2.52
726 880 5.069119 GCTCCCAAGAAAAAGGAAGAGAAAA 59.931 40.000 0.00 0.00 0.00 2.29
727 881 6.465439 TCCCAAGAAAAAGGAAGAGAAAAC 57.535 37.500 0.00 0.00 0.00 2.43
728 882 5.362717 TCCCAAGAAAAAGGAAGAGAAAACC 59.637 40.000 0.00 0.00 0.00 3.27
729 883 5.453339 CCCAAGAAAAAGGAAGAGAAAACCC 60.453 44.000 0.00 0.00 0.00 4.11
730 884 5.128663 CCAAGAAAAAGGAAGAGAAAACCCA 59.871 40.000 0.00 0.00 0.00 4.51
731 885 6.351796 CCAAGAAAAAGGAAGAGAAAACCCAA 60.352 38.462 0.00 0.00 0.00 4.12
732 886 6.471233 AGAAAAAGGAAGAGAAAACCCAAG 57.529 37.500 0.00 0.00 0.00 3.61
733 887 6.194967 AGAAAAAGGAAGAGAAAACCCAAGA 58.805 36.000 0.00 0.00 0.00 3.02
734 888 6.667848 AGAAAAAGGAAGAGAAAACCCAAGAA 59.332 34.615 0.00 0.00 0.00 2.52
735 889 6.867519 AAAAGGAAGAGAAAACCCAAGAAA 57.132 33.333 0.00 0.00 0.00 2.52
736 890 6.867519 AAAGGAAGAGAAAACCCAAGAAAA 57.132 33.333 0.00 0.00 0.00 2.29
737 891 6.867519 AAGGAAGAGAAAACCCAAGAAAAA 57.132 33.333 0.00 0.00 0.00 1.94
738 892 6.471233 AGGAAGAGAAAACCCAAGAAAAAG 57.529 37.500 0.00 0.00 0.00 2.27
739 893 5.363868 AGGAAGAGAAAACCCAAGAAAAAGG 59.636 40.000 0.00 0.00 0.00 3.11
783 937 1.659335 CGGACACGCGTGTAACTGT 60.659 57.895 41.72 21.18 45.05 3.55
809 963 4.843624 GGCTTGGCCCAGTTAACT 57.156 55.556 1.12 1.12 44.06 2.24
810 964 3.051617 GGCTTGGCCCAGTTAACTT 57.948 52.632 5.07 0.00 44.06 2.66
917 1083 3.445987 CTTCTCCAGTTTCTCTACCCCT 58.554 50.000 0.00 0.00 0.00 4.79
918 1084 3.103080 TCTCCAGTTTCTCTACCCCTC 57.897 52.381 0.00 0.00 0.00 4.30
919 1085 1.751924 CTCCAGTTTCTCTACCCCTCG 59.248 57.143 0.00 0.00 0.00 4.63
920 1086 0.175989 CCAGTTTCTCTACCCCTCGC 59.824 60.000 0.00 0.00 0.00 5.03
944 1116 1.227380 CCGCCTCCTCTTCGGATTG 60.227 63.158 0.00 0.00 45.53 2.67
945 1117 1.517832 CGCCTCCTCTTCGGATTGT 59.482 57.895 0.00 0.00 42.12 2.71
1014 1186 1.028330 CCACGATGGTGCTGCAGAAT 61.028 55.000 20.43 4.51 43.00 2.40
1111 1283 5.716703 CCCAACTCCTTCTTCATGGTAAAAT 59.283 40.000 0.00 0.00 0.00 1.82
1133 1307 0.271005 TCCCCCTCCCCTTAGAATCC 59.729 60.000 0.00 0.00 0.00 3.01
1177 1351 2.615493 CCTTTACGGCACCATTCTCAGT 60.615 50.000 0.00 0.00 0.00 3.41
1181 1355 1.021390 CGGCACCATTCTCAGTGGTC 61.021 60.000 0.00 0.00 46.79 4.02
1206 1491 0.036294 GCTTCGGTAGGCTCTTGGTT 60.036 55.000 0.00 0.00 0.00 3.67
1224 1509 4.393834 TGGTTTAGCTGAGTAATTGTGCA 58.606 39.130 0.00 0.00 0.00 4.57
1233 1518 5.621197 TGAGTAATTGTGCATGTTACCAC 57.379 39.130 12.40 0.00 0.00 4.16
1291 1576 4.156556 TGCCTGTGATTAATCTTGAAGCAC 59.843 41.667 16.24 5.75 42.23 4.40
1358 1826 1.196808 CCGTGTTGCCACATGTTCTAC 59.803 52.381 9.12 0.00 41.93 2.59
1359 1827 2.143122 CGTGTTGCCACATGTTCTACT 58.857 47.619 0.00 0.00 41.93 2.57
1360 1828 3.322369 CGTGTTGCCACATGTTCTACTA 58.678 45.455 0.00 0.00 41.93 1.82
1361 1829 3.367932 CGTGTTGCCACATGTTCTACTAG 59.632 47.826 0.00 0.00 41.93 2.57
1362 1830 3.684788 GTGTTGCCACATGTTCTACTAGG 59.315 47.826 0.00 0.00 41.44 3.02
1363 1831 3.326588 TGTTGCCACATGTTCTACTAGGT 59.673 43.478 0.00 0.00 0.00 3.08
1364 1832 4.528987 TGTTGCCACATGTTCTACTAGGTA 59.471 41.667 0.00 0.00 0.00 3.08
1365 1833 4.730949 TGCCACATGTTCTACTAGGTAC 57.269 45.455 0.00 0.00 0.00 3.34
1366 1834 4.350245 TGCCACATGTTCTACTAGGTACT 58.650 43.478 0.00 0.00 46.37 2.73
1548 2087 6.780127 TGCTTAAGTTTGGCATTTTTGTTTC 58.220 32.000 4.02 0.00 0.00 2.78
1561 2100 7.127686 GCATTTTTGTTTCTCTGTTTGGATTG 58.872 34.615 0.00 0.00 0.00 2.67
1611 2181 1.891919 GCAGGACGTCAAGTGCCAA 60.892 57.895 18.91 0.00 42.70 4.52
1661 2232 5.105392 TCACCATTTGTCTTCTTTGCAACTT 60.105 36.000 0.00 0.00 0.00 2.66
1677 2249 4.530553 TGCAACTTCATAGTTCAGTAGGGA 59.469 41.667 0.00 0.00 42.67 4.20
1719 2292 8.218338 AGCCTTAGATGTTCATTTGATAACAG 57.782 34.615 0.00 0.00 38.87 3.16
1724 2297 7.383102 AGATGTTCATTTGATAACAGGACAC 57.617 36.000 0.00 0.00 38.87 3.67
1746 2323 5.173131 CACTGTCATGCTTTAAAAACGTTCC 59.827 40.000 0.00 0.00 0.00 3.62
1748 2325 6.261381 ACTGTCATGCTTTAAAAACGTTCCTA 59.739 34.615 0.00 0.00 0.00 2.94
1751 2329 6.795593 GTCATGCTTTAAAAACGTTCCTACTC 59.204 38.462 0.00 0.00 0.00 2.59
1758 2336 7.974243 TTAAAAACGTTCCTACTCTTTTTGC 57.026 32.000 0.00 0.00 30.62 3.68
1787 2365 0.035056 GGTAATGTGAGTGGGCTGCT 60.035 55.000 0.00 0.00 0.00 4.24
1788 2366 1.209504 GGTAATGTGAGTGGGCTGCTA 59.790 52.381 0.00 0.00 0.00 3.49
1789 2367 2.280628 GTAATGTGAGTGGGCTGCTAC 58.719 52.381 0.00 0.00 0.00 3.58
1831 2409 7.435192 AGTTTATTCTACTGCTTTGTGTTTTGC 59.565 33.333 0.00 0.00 0.00 3.68
1836 2497 3.774066 ACTGCTTTGTGTTTTGCTCTTC 58.226 40.909 0.00 0.00 0.00 2.87
1858 2519 1.457303 GTACTGCTTTCTGTGACAGCG 59.543 52.381 7.93 0.00 38.09 5.18
1930 2597 8.816640 AACATGATTCTGTATTTGTTTTGGTC 57.183 30.769 0.00 0.00 0.00 4.02
1950 2633 4.811557 GGTCCTGCATTGTATACTTCACTC 59.188 45.833 4.17 0.00 0.00 3.51
1957 2640 7.210174 TGCATTGTATACTTCACTCAGATACC 58.790 38.462 4.17 0.00 0.00 2.73
1960 2643 9.599866 CATTGTATACTTCACTCAGATACCAAA 57.400 33.333 4.17 0.00 0.00 3.28
1961 2644 9.823647 ATTGTATACTTCACTCAGATACCAAAG 57.176 33.333 4.17 0.00 0.00 2.77
1976 2660 3.347216 ACCAAAGCCTAGTTGCATGTAG 58.653 45.455 0.00 0.00 0.00 2.74
2019 2714 7.701539 AACATAATCCTTGTAAATCACTGCA 57.298 32.000 0.00 0.00 0.00 4.41
2020 2715 7.701539 ACATAATCCTTGTAAATCACTGCAA 57.298 32.000 0.00 0.00 0.00 4.08
2026 2721 5.705441 TCCTTGTAAATCACTGCAAACCTAG 59.295 40.000 0.00 0.00 0.00 3.02
2046 2741 4.836125 AGTGCTGTAATTGTTCCACAAG 57.164 40.909 0.00 0.00 41.94 3.16
2166 2880 7.119709 TCATCTTATTCGGACCATTAAGTCA 57.880 36.000 0.00 0.00 38.59 3.41
2167 2881 7.210174 TCATCTTATTCGGACCATTAAGTCAG 58.790 38.462 0.00 0.00 38.59 3.51
2168 2882 6.540438 TCTTATTCGGACCATTAAGTCAGT 57.460 37.500 0.00 0.00 38.59 3.41
2169 2883 6.570692 TCTTATTCGGACCATTAAGTCAGTC 58.429 40.000 0.00 0.00 38.59 3.51
2197 2916 7.599998 ACTTGCCATGATTTACTTTGTTTGATC 59.400 33.333 0.00 0.00 0.00 2.92
2222 2941 5.611796 TGTAGATCACAACTTCAACATGC 57.388 39.130 0.00 0.00 32.95 4.06
2223 2942 4.455533 TGTAGATCACAACTTCAACATGCC 59.544 41.667 0.00 0.00 32.95 4.40
2242 2961 2.817839 GCCCTTGGTTACACCTGTGATT 60.818 50.000 3.94 0.00 39.58 2.57
2245 2979 4.261994 CCCTTGGTTACACCTGTGATTTTG 60.262 45.833 3.94 0.00 39.58 2.44
2297 3098 1.713597 TCTGTGATTGCAGCACTACG 58.286 50.000 18.66 10.00 37.18 3.51
2384 3185 1.538876 TGGTAAGGCCAGGCTCACT 60.539 57.895 12.43 0.00 43.61 3.41
2596 3403 2.763448 GGGCTGTGAGATCAGACTAGTT 59.237 50.000 0.00 0.00 42.57 2.24
2619 3426 2.276732 CCTGCCAGGTAATATGGTGG 57.723 55.000 1.39 0.00 40.17 4.61
2638 3447 4.039124 GGTGGGTCTGATGAATTGTTGTTT 59.961 41.667 0.00 0.00 0.00 2.83
2659 3468 2.029623 CTAATGATGCTGCTTGCCCTT 58.970 47.619 0.00 0.00 42.00 3.95
2697 3506 6.142139 TCTTGAATCGTTTGTTGCTTGTATG 58.858 36.000 0.00 0.00 0.00 2.39
2720 3552 4.264460 TCTGTTTGTGTTTGTTTGCCTT 57.736 36.364 0.00 0.00 0.00 4.35
2837 3669 0.329261 TGTCCTGCCCTTCTGAATGG 59.671 55.000 7.29 7.29 0.00 3.16
2906 3746 1.280998 ACCTCCGTCCTGGTTTATTGG 59.719 52.381 0.00 0.00 39.52 3.16
2907 3747 1.379527 CTCCGTCCTGGTTTATTGGC 58.620 55.000 0.00 0.00 39.52 4.52
2908 3748 0.034863 TCCGTCCTGGTTTATTGGCC 60.035 55.000 0.00 0.00 39.52 5.36
2909 3749 1.035385 CCGTCCTGGTTTATTGGCCC 61.035 60.000 0.00 0.00 0.00 5.80
2910 3750 1.035385 CGTCCTGGTTTATTGGCCCC 61.035 60.000 0.00 0.00 0.00 5.80
2911 3751 0.686441 GTCCTGGTTTATTGGCCCCC 60.686 60.000 0.00 0.00 0.00 5.40
2912 3752 0.853586 TCCTGGTTTATTGGCCCCCT 60.854 55.000 0.00 0.00 0.00 4.79
2913 3753 0.042581 CCTGGTTTATTGGCCCCCTT 59.957 55.000 0.00 0.00 0.00 3.95
2914 3754 1.289530 CCTGGTTTATTGGCCCCCTTA 59.710 52.381 0.00 0.00 0.00 2.69
2915 3755 2.292587 CCTGGTTTATTGGCCCCCTTAA 60.293 50.000 0.00 0.00 0.00 1.85
2916 3756 3.632385 CCTGGTTTATTGGCCCCCTTAAT 60.632 47.826 0.00 0.00 0.00 1.40
2917 3757 4.388118 CCTGGTTTATTGGCCCCCTTAATA 60.388 45.833 0.00 0.00 0.00 0.98
2918 3758 5.402630 CTGGTTTATTGGCCCCCTTAATAT 58.597 41.667 0.00 0.00 0.00 1.28
2919 3759 5.793967 TGGTTTATTGGCCCCCTTAATATT 58.206 37.500 0.00 0.00 0.00 1.28
2920 3760 6.213525 TGGTTTATTGGCCCCCTTAATATTT 58.786 36.000 0.00 0.00 0.00 1.40
2921 3761 7.371043 TGGTTTATTGGCCCCCTTAATATTTA 58.629 34.615 0.00 0.00 0.00 1.40
2922 3762 8.019652 TGGTTTATTGGCCCCCTTAATATTTAT 58.980 33.333 0.00 0.00 0.00 1.40
2923 3763 8.886369 GGTTTATTGGCCCCCTTAATATTTATT 58.114 33.333 0.00 0.00 0.00 1.40
2924 3764 9.719355 GTTTATTGGCCCCCTTAATATTTATTG 57.281 33.333 0.00 0.00 0.00 1.90
2966 3807 9.739276 TGGGCCAAACTATAATGATAGATTTAG 57.261 33.333 2.13 0.00 37.81 1.85
2999 3840 8.986477 AATAATAGTGCAAGTCACCAAAAATC 57.014 30.769 0.00 0.00 46.81 2.17
3076 3937 4.576993 GCACAAAATGCGAAGGGG 57.423 55.556 0.00 0.00 46.55 4.79
3077 3938 1.079888 GCACAAAATGCGAAGGGGG 60.080 57.895 0.00 0.00 46.55 5.40
3079 3940 1.228862 ACAAAATGCGAAGGGGGCT 60.229 52.632 0.00 0.00 0.00 5.19
3087 3948 1.315690 GCGAAGGGGGCTAATAAACC 58.684 55.000 0.00 0.00 0.00 3.27
3095 3956 2.508300 GGGGCTAATAAACCAGGACAGA 59.492 50.000 0.00 0.00 0.00 3.41
3100 3961 5.453480 GGCTAATAAACCAGGACAGAGGTAG 60.453 48.000 0.00 0.00 37.07 3.18
3104 3965 3.829728 AACCAGGACAGAGGTAGTACT 57.170 47.619 0.00 0.00 37.07 2.73
3105 3966 4.942363 AACCAGGACAGAGGTAGTACTA 57.058 45.455 0.00 0.00 37.07 1.82
3106 3967 4.233632 ACCAGGACAGAGGTAGTACTAC 57.766 50.000 22.53 22.53 36.07 2.73
3107 3968 3.590630 ACCAGGACAGAGGTAGTACTACA 59.409 47.826 29.38 0.00 37.78 2.74
3108 3969 4.043812 ACCAGGACAGAGGTAGTACTACAA 59.956 45.833 29.38 0.00 37.78 2.41
3109 3970 5.014858 CCAGGACAGAGGTAGTACTACAAA 58.985 45.833 29.38 0.00 37.78 2.83
3110 3971 5.657302 CCAGGACAGAGGTAGTACTACAAAT 59.343 44.000 29.38 17.21 37.78 2.32
3111 3972 6.832384 CCAGGACAGAGGTAGTACTACAAATA 59.168 42.308 29.38 0.00 37.78 1.40
3112 3973 7.201803 CCAGGACAGAGGTAGTACTACAAATAC 60.202 44.444 29.38 14.81 37.78 1.89
3113 3974 7.556996 CAGGACAGAGGTAGTACTACAAATACT 59.443 40.741 29.38 18.72 37.78 2.12
3114 3975 8.776119 AGGACAGAGGTAGTACTACAAATACTA 58.224 37.037 29.38 0.00 37.78 1.82
3122 3983 6.704289 AGTACTACAAATACTACGATGCCA 57.296 37.500 0.00 0.00 30.94 4.92
3123 3984 7.104043 AGTACTACAAATACTACGATGCCAA 57.896 36.000 0.00 0.00 30.94 4.52
3124 3985 7.549839 AGTACTACAAATACTACGATGCCAAA 58.450 34.615 0.00 0.00 30.94 3.28
3125 3986 8.202137 AGTACTACAAATACTACGATGCCAAAT 58.798 33.333 0.00 0.00 30.94 2.32
3126 3987 7.246674 ACTACAAATACTACGATGCCAAATG 57.753 36.000 0.00 0.00 0.00 2.32
3127 3988 7.045416 ACTACAAATACTACGATGCCAAATGA 58.955 34.615 0.00 0.00 0.00 2.57
3128 3989 6.363577 ACAAATACTACGATGCCAAATGAG 57.636 37.500 0.00 0.00 0.00 2.90
3129 3990 5.880332 ACAAATACTACGATGCCAAATGAGT 59.120 36.000 0.00 0.00 0.00 3.41
3130 3991 5.991328 AATACTACGATGCCAAATGAGTG 57.009 39.130 0.00 0.00 0.00 3.51
3131 3992 3.610040 ACTACGATGCCAAATGAGTGA 57.390 42.857 0.00 0.00 0.00 3.41
3132 3993 3.937814 ACTACGATGCCAAATGAGTGAA 58.062 40.909 0.00 0.00 0.00 3.18
3133 3994 4.517285 ACTACGATGCCAAATGAGTGAAT 58.483 39.130 0.00 0.00 0.00 2.57
3134 3995 4.943705 ACTACGATGCCAAATGAGTGAATT 59.056 37.500 0.00 0.00 0.00 2.17
3135 3996 4.789012 ACGATGCCAAATGAGTGAATTT 57.211 36.364 0.00 0.00 0.00 1.82
3136 3997 5.895636 ACGATGCCAAATGAGTGAATTTA 57.104 34.783 0.00 0.00 0.00 1.40
3137 3998 5.640732 ACGATGCCAAATGAGTGAATTTAC 58.359 37.500 0.00 0.00 0.00 2.01
3138 3999 5.182950 ACGATGCCAAATGAGTGAATTTACA 59.817 36.000 2.93 0.00 0.00 2.41
3139 4000 6.092092 CGATGCCAAATGAGTGAATTTACAA 58.908 36.000 2.93 0.00 0.00 2.41
3140 4001 6.585702 CGATGCCAAATGAGTGAATTTACAAA 59.414 34.615 2.93 0.00 0.00 2.83
3141 4002 7.276218 CGATGCCAAATGAGTGAATTTACAAAT 59.724 33.333 2.93 0.00 0.00 2.32
3142 4003 9.585099 GATGCCAAATGAGTGAATTTACAAATA 57.415 29.630 2.93 0.00 0.00 1.40
3143 4004 8.755696 TGCCAAATGAGTGAATTTACAAATAC 57.244 30.769 2.93 0.00 0.00 1.89
3144 4005 7.540400 TGCCAAATGAGTGAATTTACAAATACG 59.460 33.333 2.93 0.00 0.00 3.06
3145 4006 7.540745 GCCAAATGAGTGAATTTACAAATACGT 59.459 33.333 2.93 0.00 0.00 3.57
3146 4007 9.061610 CCAAATGAGTGAATTTACAAATACGTC 57.938 33.333 2.93 0.00 0.00 4.34
3147 4008 9.825972 CAAATGAGTGAATTTACAAATACGTCT 57.174 29.630 2.93 0.00 0.00 4.18
3175 4036 5.598769 ACATCCTACAAATACTACGAAGCC 58.401 41.667 0.00 0.00 0.00 4.35
3188 4049 5.003804 ACTACGAAGCCAAATGAGTGAATT 58.996 37.500 0.00 0.00 0.00 2.17
3197 4058 8.986477 AGCCAAATGAGTGAATTTACAAATAC 57.014 30.769 2.93 0.00 0.00 1.89
3236 4097 8.499514 CGTATATTTAGAAACGGAGGAAGTAC 57.500 38.462 0.00 0.00 0.00 2.73
3237 4098 8.131100 CGTATATTTAGAAACGGAGGAAGTACA 58.869 37.037 0.00 0.00 0.00 2.90
3238 4099 9.978044 GTATATTTAGAAACGGAGGAAGTACAT 57.022 33.333 0.00 0.00 0.00 2.29
3241 4102 8.943909 ATTTAGAAACGGAGGAAGTACATTAG 57.056 34.615 0.00 0.00 0.00 1.73
3242 4103 7.707624 TTAGAAACGGAGGAAGTACATTAGA 57.292 36.000 0.00 0.00 0.00 2.10
3243 4104 6.793505 AGAAACGGAGGAAGTACATTAGAT 57.206 37.500 0.00 0.00 0.00 1.98
3244 4105 7.184067 AGAAACGGAGGAAGTACATTAGATT 57.816 36.000 0.00 0.00 0.00 2.40
3245 4106 8.302515 AGAAACGGAGGAAGTACATTAGATTA 57.697 34.615 0.00 0.00 0.00 1.75
3246 4107 8.925338 AGAAACGGAGGAAGTACATTAGATTAT 58.075 33.333 0.00 0.00 0.00 1.28
3249 4110 8.937207 ACGGAGGAAGTACATTAGATTATAGT 57.063 34.615 0.00 0.00 0.00 2.12
3250 4111 9.364653 ACGGAGGAAGTACATTAGATTATAGTT 57.635 33.333 0.00 0.00 0.00 2.24
3251 4112 9.627395 CGGAGGAAGTACATTAGATTATAGTTG 57.373 37.037 0.00 0.00 0.00 3.16
3252 4113 9.425577 GGAGGAAGTACATTAGATTATAGTTGC 57.574 37.037 0.00 0.00 0.00 4.17
3253 4114 9.425577 GAGGAAGTACATTAGATTATAGTTGCC 57.574 37.037 0.00 0.00 0.00 4.52
3254 4115 8.376270 AGGAAGTACATTAGATTATAGTTGCCC 58.624 37.037 0.00 0.00 0.00 5.36
3255 4116 7.606839 GGAAGTACATTAGATTATAGTTGCCCC 59.393 40.741 0.00 0.00 0.00 5.80
3256 4117 7.017319 AGTACATTAGATTATAGTTGCCCCC 57.983 40.000 0.00 0.00 0.00 5.40
3257 4118 5.922960 ACATTAGATTATAGTTGCCCCCA 57.077 39.130 0.00 0.00 0.00 4.96
3258 4119 6.274322 ACATTAGATTATAGTTGCCCCCAA 57.726 37.500 0.00 0.00 0.00 4.12
3259 4120 6.678547 ACATTAGATTATAGTTGCCCCCAAA 58.321 36.000 0.00 0.00 31.68 3.28
3260 4121 7.129425 ACATTAGATTATAGTTGCCCCCAAAA 58.871 34.615 0.00 0.00 31.68 2.44
3261 4122 7.069455 ACATTAGATTATAGTTGCCCCCAAAAC 59.931 37.037 0.00 0.00 31.68 2.43
3262 4123 4.941713 AGATTATAGTTGCCCCCAAAACA 58.058 39.130 0.00 0.00 31.68 2.83
3263 4124 5.337788 AGATTATAGTTGCCCCCAAAACAA 58.662 37.500 0.00 0.00 31.68 2.83
3264 4125 4.875561 TTATAGTTGCCCCCAAAACAAC 57.124 40.909 0.00 0.00 43.12 3.32
3265 4126 1.415200 TAGTTGCCCCCAAAACAACC 58.585 50.000 0.00 0.00 43.68 3.77
3266 4127 1.147376 GTTGCCCCCAAAACAACCC 59.853 57.895 0.00 0.00 38.15 4.11
3267 4128 1.306997 TTGCCCCCAAAACAACCCA 60.307 52.632 0.00 0.00 0.00 4.51
3268 4129 0.914417 TTGCCCCCAAAACAACCCAA 60.914 50.000 0.00 0.00 0.00 4.12
3269 4130 0.695803 TGCCCCCAAAACAACCCAAT 60.696 50.000 0.00 0.00 0.00 3.16
3270 4131 0.250684 GCCCCCAAAACAACCCAATG 60.251 55.000 0.00 0.00 0.00 2.82
3271 4132 1.428869 CCCCCAAAACAACCCAATGA 58.571 50.000 0.00 0.00 0.00 2.57
3272 4133 1.984424 CCCCCAAAACAACCCAATGAT 59.016 47.619 0.00 0.00 0.00 2.45
3273 4134 2.290197 CCCCCAAAACAACCCAATGATG 60.290 50.000 0.00 0.00 0.00 3.07
3289 4150 4.225860 TGGACGGACCAACATCCT 57.774 55.556 0.00 0.00 46.75 3.24
3290 4151 1.980052 TGGACGGACCAACATCCTC 59.020 57.895 0.00 0.00 46.75 3.71
3291 4152 0.834261 TGGACGGACCAACATCCTCA 60.834 55.000 0.00 0.00 46.75 3.86
3292 4153 0.541863 GGACGGACCAACATCCTCAT 59.458 55.000 0.00 0.00 36.52 2.90
3293 4154 1.473434 GGACGGACCAACATCCTCATC 60.473 57.143 0.00 0.00 36.52 2.92
3294 4155 1.207089 GACGGACCAACATCCTCATCA 59.793 52.381 0.00 0.00 36.52 3.07
3295 4156 1.066143 ACGGACCAACATCCTCATCAC 60.066 52.381 0.00 0.00 36.52 3.06
3296 4157 1.656652 GGACCAACATCCTCATCACG 58.343 55.000 0.00 0.00 35.68 4.35
3297 4158 1.656652 GACCAACATCCTCATCACGG 58.343 55.000 0.00 0.00 0.00 4.94
3298 4159 0.984230 ACCAACATCCTCATCACGGT 59.016 50.000 0.00 0.00 0.00 4.83
3299 4160 1.351017 ACCAACATCCTCATCACGGTT 59.649 47.619 0.00 0.00 0.00 4.44
3300 4161 2.009774 CCAACATCCTCATCACGGTTC 58.990 52.381 0.00 0.00 0.00 3.62
3301 4162 2.009774 CAACATCCTCATCACGGTTCC 58.990 52.381 0.00 0.00 0.00 3.62
3302 4163 0.541863 ACATCCTCATCACGGTTCCC 59.458 55.000 0.00 0.00 0.00 3.97
3303 4164 0.541392 CATCCTCATCACGGTTCCCA 59.459 55.000 0.00 0.00 0.00 4.37
3304 4165 0.833287 ATCCTCATCACGGTTCCCAG 59.167 55.000 0.00 0.00 0.00 4.45
3305 4166 0.544357 TCCTCATCACGGTTCCCAGT 60.544 55.000 0.00 0.00 0.00 4.00
3306 4167 0.324943 CCTCATCACGGTTCCCAGTT 59.675 55.000 0.00 0.00 0.00 3.16
3307 4168 1.271379 CCTCATCACGGTTCCCAGTTT 60.271 52.381 0.00 0.00 0.00 2.66
3308 4169 2.504367 CTCATCACGGTTCCCAGTTTT 58.496 47.619 0.00 0.00 0.00 2.43
3309 4170 2.484264 CTCATCACGGTTCCCAGTTTTC 59.516 50.000 0.00 0.00 0.00 2.29
3310 4171 1.539827 CATCACGGTTCCCAGTTTTCC 59.460 52.381 0.00 0.00 0.00 3.13
3311 4172 0.841289 TCACGGTTCCCAGTTTTCCT 59.159 50.000 0.00 0.00 0.00 3.36
3312 4173 1.202722 TCACGGTTCCCAGTTTTCCTC 60.203 52.381 0.00 0.00 0.00 3.71
3313 4174 1.137697 ACGGTTCCCAGTTTTCCTCT 58.862 50.000 0.00 0.00 0.00 3.69
3314 4175 1.071857 ACGGTTCCCAGTTTTCCTCTC 59.928 52.381 0.00 0.00 0.00 3.20
3315 4176 1.809684 GGTTCCCAGTTTTCCTCTCG 58.190 55.000 0.00 0.00 0.00 4.04
3316 4177 1.071857 GGTTCCCAGTTTTCCTCTCGT 59.928 52.381 0.00 0.00 0.00 4.18
3317 4178 2.414806 GTTCCCAGTTTTCCTCTCGTC 58.585 52.381 0.00 0.00 0.00 4.20
3318 4179 0.974383 TCCCAGTTTTCCTCTCGTCC 59.026 55.000 0.00 0.00 0.00 4.79
3319 4180 0.977395 CCCAGTTTTCCTCTCGTCCT 59.023 55.000 0.00 0.00 0.00 3.85
3320 4181 1.348036 CCCAGTTTTCCTCTCGTCCTT 59.652 52.381 0.00 0.00 0.00 3.36
3321 4182 2.417719 CCAGTTTTCCTCTCGTCCTTG 58.582 52.381 0.00 0.00 0.00 3.61
3322 4183 2.417719 CAGTTTTCCTCTCGTCCTTGG 58.582 52.381 0.00 0.00 0.00 3.61
3323 4184 1.157585 GTTTTCCTCTCGTCCTTGGC 58.842 55.000 0.00 0.00 0.00 4.52
3324 4185 0.320421 TTTTCCTCTCGTCCTTGGCG 60.320 55.000 0.00 0.00 0.00 5.69
3325 4186 2.167398 TTTCCTCTCGTCCTTGGCGG 62.167 60.000 4.32 0.00 0.00 6.13
3326 4187 4.821589 CCTCTCGTCCTTGGCGGC 62.822 72.222 0.00 0.00 0.00 6.53
3327 4188 3.764466 CTCTCGTCCTTGGCGGCT 61.764 66.667 11.43 0.00 0.00 5.52
3328 4189 3.997064 CTCTCGTCCTTGGCGGCTG 62.997 68.421 11.43 2.82 0.00 4.85
3331 4192 4.697756 CGTCCTTGGCGGCTGGAA 62.698 66.667 21.38 3.21 0.00 3.53
3332 4193 3.056328 GTCCTTGGCGGCTGGAAC 61.056 66.667 21.38 13.79 0.00 3.62
3333 4194 4.344865 TCCTTGGCGGCTGGAACC 62.345 66.667 18.54 0.00 0.00 3.62
3335 4196 4.351054 CTTGGCGGCTGGAACCCT 62.351 66.667 11.43 0.00 0.00 4.34
3336 4197 2.931105 TTGGCGGCTGGAACCCTA 60.931 61.111 11.43 0.00 0.00 3.53
3337 4198 2.876368 CTTGGCGGCTGGAACCCTAG 62.876 65.000 11.43 0.00 0.00 3.02
3338 4199 4.858680 GGCGGCTGGAACCCTAGC 62.859 72.222 0.00 0.00 39.17 3.42
3342 4203 4.858680 GCTGGAACCCTAGCCGCC 62.859 72.222 0.00 0.00 33.89 6.13
3343 4204 4.530857 CTGGAACCCTAGCCGCCG 62.531 72.222 0.00 0.00 0.00 6.46
3362 4223 3.787001 CAGGGGAGGCCGGTCTTC 61.787 72.222 11.49 8.44 0.00 2.87
3365 4226 3.327404 GGGAGGCCGGTCTTCCAA 61.327 66.667 29.63 0.00 32.55 3.53
3366 4227 2.046217 GGAGGCCGGTCTTCCAAC 60.046 66.667 11.49 0.00 0.00 3.77
3367 4228 2.434359 GAGGCCGGTCTTCCAACG 60.434 66.667 11.49 0.00 0.00 4.10
3368 4229 4.699522 AGGCCGGTCTTCCAACGC 62.700 66.667 0.35 0.00 0.00 4.84
3373 4234 3.119096 GGTCTTCCAACGCCGCTC 61.119 66.667 0.00 0.00 0.00 5.03
3374 4235 2.048127 GTCTTCCAACGCCGCTCT 60.048 61.111 0.00 0.00 0.00 4.09
3375 4236 2.095252 GTCTTCCAACGCCGCTCTC 61.095 63.158 0.00 0.00 0.00 3.20
3376 4237 2.815647 CTTCCAACGCCGCTCTCC 60.816 66.667 0.00 0.00 0.00 3.71
3377 4238 4.735132 TTCCAACGCCGCTCTCCG 62.735 66.667 0.00 0.00 0.00 4.63
3414 4275 4.112341 GACCTCGGTCGTCGGTGG 62.112 72.222 0.00 6.74 39.77 4.61
3415 4276 4.962836 ACCTCGGTCGTCGGTGGT 62.963 66.667 7.86 7.86 39.69 4.16
3416 4277 4.415332 CCTCGGTCGTCGGTGGTG 62.415 72.222 0.00 0.00 39.77 4.17
3417 4278 3.359523 CTCGGTCGTCGGTGGTGA 61.360 66.667 0.00 0.00 39.77 4.02
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
339 364 3.447025 ATTCCGCTAGAGGCACGGC 62.447 63.158 7.80 0.00 46.49 5.68
357 382 0.181587 TCCAAGAGGCACGGTTTTGA 59.818 50.000 0.00 0.00 33.74 2.69
399 440 1.315257 CCGTGCCTCTTGGAAATGGG 61.315 60.000 0.00 0.00 34.57 4.00
513 627 4.649705 TGCCGGTCTTCCCCAGGA 62.650 66.667 1.90 0.00 0.00 3.86
514 628 2.706952 TTTTGCCGGTCTTCCCCAGG 62.707 60.000 1.90 0.00 0.00 4.45
517 631 4.184439 TTTTTGCCGGTCTTCCCC 57.816 55.556 1.90 0.00 0.00 4.81
555 670 6.824305 TTGGCTTTTCAAACAATTTTTCCA 57.176 29.167 0.00 0.00 0.00 3.53
563 693 3.498397 TGCGTTTTTGGCTTTTCAAACAA 59.502 34.783 0.00 0.00 36.49 2.83
569 699 1.397065 CGCATGCGTTTTTGGCTTTTC 60.397 47.619 31.33 0.00 34.35 2.29
630 784 2.202797 GCGCTCTCAGCCATTCGA 60.203 61.111 0.00 0.00 38.18 3.71
656 810 0.679002 AGCCTCGCAACAATCAGCAT 60.679 50.000 0.00 0.00 0.00 3.79
664 818 1.667830 CTTCGGAAGCCTCGCAACA 60.668 57.895 4.57 0.00 0.00 3.33
694 848 6.548321 TCCTTTTTCTTGGGAGCAACTAATA 58.452 36.000 0.00 0.00 0.00 0.98
710 864 6.465439 TCTTGGGTTTTCTCTTCCTTTTTC 57.535 37.500 0.00 0.00 0.00 2.29
711 865 6.867519 TTCTTGGGTTTTCTCTTCCTTTTT 57.132 33.333 0.00 0.00 0.00 1.94
712 866 6.867519 TTTCTTGGGTTTTCTCTTCCTTTT 57.132 33.333 0.00 0.00 0.00 2.27
713 867 6.867519 TTTTCTTGGGTTTTCTCTTCCTTT 57.132 33.333 0.00 0.00 0.00 3.11
714 868 6.127054 CCTTTTTCTTGGGTTTTCTCTTCCTT 60.127 38.462 0.00 0.00 0.00 3.36
715 869 5.363868 CCTTTTTCTTGGGTTTTCTCTTCCT 59.636 40.000 0.00 0.00 0.00 3.36
716 870 5.453339 CCCTTTTTCTTGGGTTTTCTCTTCC 60.453 44.000 0.00 0.00 38.65 3.46
717 871 5.362717 TCCCTTTTTCTTGGGTTTTCTCTTC 59.637 40.000 0.00 0.00 43.74 2.87
718 872 5.277250 TCCCTTTTTCTTGGGTTTTCTCTT 58.723 37.500 0.00 0.00 43.74 2.85
719 873 4.878968 TCCCTTTTTCTTGGGTTTTCTCT 58.121 39.130 0.00 0.00 43.74 3.10
720 874 5.362717 TCTTCCCTTTTTCTTGGGTTTTCTC 59.637 40.000 0.00 0.00 43.74 2.87
721 875 5.277250 TCTTCCCTTTTTCTTGGGTTTTCT 58.723 37.500 0.00 0.00 43.74 2.52
722 876 5.362717 TCTCTTCCCTTTTTCTTGGGTTTTC 59.637 40.000 0.00 0.00 43.74 2.29
723 877 5.277250 TCTCTTCCCTTTTTCTTGGGTTTT 58.723 37.500 0.00 0.00 43.74 2.43
724 878 4.878968 TCTCTTCCCTTTTTCTTGGGTTT 58.121 39.130 0.00 0.00 43.74 3.27
725 879 4.536295 TCTCTTCCCTTTTTCTTGGGTT 57.464 40.909 0.00 0.00 43.74 4.11
726 880 4.536295 TTCTCTTCCCTTTTTCTTGGGT 57.464 40.909 0.00 0.00 43.74 4.51
727 881 5.869649 TTTTCTCTTCCCTTTTTCTTGGG 57.130 39.130 0.00 0.00 44.66 4.12
944 1116 4.083862 GGTCTCCGGCAGGGACAC 62.084 72.222 20.10 9.11 40.94 3.67
945 1117 4.631740 TGGTCTCCGGCAGGGACA 62.632 66.667 20.10 6.32 40.94 4.02
1014 1186 0.037326 GGTTCAGCAGGTCGATGTCA 60.037 55.000 0.00 0.00 31.13 3.58
1111 1283 3.442569 GGATTCTAAGGGGAGGGGGAATA 60.443 52.174 0.00 0.00 0.00 1.75
1133 1307 1.875813 GATGCACGCACGGAGAGAG 60.876 63.158 0.00 0.00 0.00 3.20
1177 1351 0.242825 CTACCGAAGCACGAAGACCA 59.757 55.000 4.96 0.00 45.77 4.02
1181 1355 0.802607 GAGCCTACCGAAGCACGAAG 60.803 60.000 4.96 2.76 45.77 3.79
1206 1491 6.093495 GGTAACATGCACAATTACTCAGCTAA 59.907 38.462 13.39 0.00 0.00 3.09
1233 1518 1.534595 CGTAATCTACCACGAACCCGG 60.535 57.143 0.00 0.00 40.56 5.73
1311 1776 9.231297 GTTGACATATATGCAAGGGTATGTAAT 57.769 33.333 12.79 0.00 37.76 1.89
1358 1826 9.290988 TCTAGCATAGAGATTTTCAGTACCTAG 57.709 37.037 0.00 0.00 44.15 3.02
1416 1884 6.037500 CACAGAAACAACTCAGATCAGAACAA 59.962 38.462 0.00 0.00 0.00 2.83
1469 1954 2.351706 AAAAGGGACGTGGCACTAAA 57.648 45.000 16.72 0.00 0.00 1.85
1548 2087 2.586425 ACCACCACAATCCAAACAGAG 58.414 47.619 0.00 0.00 0.00 3.35
1561 2100 3.440173 CACATGACCATTAGAACCACCAC 59.560 47.826 0.00 0.00 0.00 4.16
1611 2181 5.473066 AAAATTACATGTTGAAGCAGCCT 57.527 34.783 2.30 0.00 0.00 4.58
1661 2232 6.100279 AGCAAATGATCCCTACTGAACTATGA 59.900 38.462 0.00 0.00 0.00 2.15
1719 2292 4.675114 CGTTTTTAAAGCATGACAGTGTCC 59.325 41.667 20.43 5.39 0.00 4.02
1724 2297 5.519722 AGGAACGTTTTTAAAGCATGACAG 58.480 37.500 0.46 0.00 0.00 3.51
1746 2323 7.027778 ACCAGTTTACTTGCAAAAAGAGTAG 57.972 36.000 0.00 0.00 0.00 2.57
1748 2325 5.914898 ACCAGTTTACTTGCAAAAAGAGT 57.085 34.783 0.00 0.00 0.00 3.24
1751 2329 7.704472 TCACATTACCAGTTTACTTGCAAAAAG 59.296 33.333 0.00 0.00 0.00 2.27
1758 2336 5.181245 CCCACTCACATTACCAGTTTACTTG 59.819 44.000 0.00 0.00 0.00 3.16
1787 2365 9.104965 GAATAAACTATGCACATGTACTTGGTA 57.895 33.333 12.86 2.91 0.00 3.25
1788 2366 7.829211 AGAATAAACTATGCACATGTACTTGGT 59.171 33.333 12.86 0.00 0.00 3.67
1789 2367 8.213518 AGAATAAACTATGCACATGTACTTGG 57.786 34.615 12.86 0.00 0.00 3.61
1831 2409 4.683781 GTCACAGAAAGCAGTACTGAAGAG 59.316 45.833 27.08 12.08 35.85 2.85
1836 2497 2.478134 GCTGTCACAGAAAGCAGTACTG 59.522 50.000 18.93 18.93 42.10 2.74
1914 2580 4.582701 TGCAGGACCAAAACAAATACAG 57.417 40.909 0.00 0.00 0.00 2.74
1918 2584 4.420522 ACAATGCAGGACCAAAACAAAT 57.579 36.364 0.00 0.00 0.00 2.32
1930 2597 5.664457 TCTGAGTGAAGTATACAATGCAGG 58.336 41.667 5.50 0.00 0.00 4.85
1950 2633 3.609853 TGCAACTAGGCTTTGGTATCTG 58.390 45.455 0.00 0.00 34.04 2.90
1957 2640 3.411415 GCTACATGCAACTAGGCTTTG 57.589 47.619 0.00 0.00 42.31 2.77
1976 2660 5.862924 TGTTTGAACTAGCATCTTACTGC 57.137 39.130 0.00 0.00 42.62 4.40
1983 2672 7.989826 ACAAGGATTATGTTTGAACTAGCATC 58.010 34.615 0.00 0.00 0.00 3.91
2019 2714 5.240844 GTGGAACAATTACAGCACTAGGTTT 59.759 40.000 0.00 0.00 44.16 3.27
2020 2715 4.760204 GTGGAACAATTACAGCACTAGGTT 59.240 41.667 0.00 0.00 44.16 3.50
2046 2741 8.094798 TGGTAAACTGATGATTCAAGTTACAC 57.905 34.615 4.57 6.02 35.16 2.90
2148 2862 6.832384 AGTAGACTGACTTAATGGTCCGAATA 59.168 38.462 0.00 0.00 35.54 1.75
2152 2866 4.985538 AGTAGACTGACTTAATGGTCCG 57.014 45.455 0.00 0.00 35.54 4.79
2161 2875 4.833478 ATCATGGCAAGTAGACTGACTT 57.167 40.909 0.00 0.00 40.35 3.01
2166 2880 6.942576 ACAAAGTAAATCATGGCAAGTAGACT 59.057 34.615 0.00 0.00 0.00 3.24
2167 2881 7.145932 ACAAAGTAAATCATGGCAAGTAGAC 57.854 36.000 0.00 0.00 0.00 2.59
2168 2882 7.759489 AACAAAGTAAATCATGGCAAGTAGA 57.241 32.000 0.00 0.00 0.00 2.59
2169 2883 8.081633 TCAAACAAAGTAAATCATGGCAAGTAG 58.918 33.333 0.00 0.00 0.00 2.57
2252 2986 4.516698 AGAGTTGTTCAGCAATCAATCGTT 59.483 37.500 0.00 0.00 39.55 3.85
2254 2988 4.675190 AGAGTTGTTCAGCAATCAATCG 57.325 40.909 0.00 0.00 39.55 3.34
2297 3098 1.302832 CTGGGAGTGGCTGAACACC 60.303 63.158 0.00 0.00 42.28 4.16
2348 3149 4.020617 CCCGTTGGCTGGCAGAGA 62.021 66.667 20.86 0.00 0.00 3.10
2384 3185 3.068881 CGGAAGGAGCAACCCTCA 58.931 61.111 0.00 0.00 42.62 3.86
2419 3220 5.105756 GCTTGCTTTTTAAGATAGCCTTCCA 60.106 40.000 0.00 0.00 36.34 3.53
2420 3221 5.344066 GCTTGCTTTTTAAGATAGCCTTCC 58.656 41.667 0.00 0.00 36.34 3.46
2619 3426 8.514594 TCATTAGAAACAACAATTCATCAGACC 58.485 33.333 0.00 0.00 0.00 3.85
2659 3468 5.069119 ACGATTCAAGAGTCATATACCAGCA 59.931 40.000 0.00 0.00 0.00 4.41
2697 3506 3.993736 AGGCAAACAAACACAAACAGAAC 59.006 39.130 0.00 0.00 0.00 3.01
2720 3552 1.737236 GCGCTACCATTCATGACACAA 59.263 47.619 0.00 0.00 0.00 3.33
2769 3601 1.028130 CGATCAGGAGAGCTGTAGCA 58.972 55.000 6.65 0.00 45.16 3.49
2803 3635 1.153025 GACATCCCCGGCCTTTACC 60.153 63.158 0.00 0.00 0.00 2.85
2837 3669 7.710907 TCAAGAGTAATCTGTATTGGTGCATAC 59.289 37.037 0.00 0.00 0.00 2.39
2906 3746 4.775780 GGGACCAATAAATATTAAGGGGGC 59.224 45.833 0.00 0.00 0.00 5.80
2923 3763 8.938182 TTTGGCCCAAAATATTAAGGGGACCA 62.938 42.308 20.83 20.12 46.91 4.02
2924 3764 6.580677 TTTGGCCCAAAATATTAAGGGGACC 61.581 44.000 20.83 18.54 46.91 4.46
2966 3807 7.857885 GGTGACTTGCACTATTATTTTCATAGC 59.142 37.037 0.00 0.00 46.86 2.97
2981 3822 6.389091 TGATATGATTTTTGGTGACTTGCAC 58.611 36.000 0.00 0.00 46.98 4.57
2986 3827 7.959658 TCCAATGATATGATTTTTGGTGACT 57.040 32.000 0.00 0.00 38.36 3.41
3070 3931 2.512476 TCCTGGTTTATTAGCCCCCTTC 59.488 50.000 0.00 0.00 0.00 3.46
3076 3937 3.200165 ACCTCTGTCCTGGTTTATTAGCC 59.800 47.826 0.00 0.00 31.62 3.93
3077 3938 4.489306 ACCTCTGTCCTGGTTTATTAGC 57.511 45.455 0.00 0.00 31.62 3.09
3079 3940 7.416731 AGTACTACCTCTGTCCTGGTTTATTA 58.583 38.462 0.00 0.00 37.74 0.98
3087 3948 6.777213 ATTTGTAGTACTACCTCTGTCCTG 57.223 41.667 26.41 0.00 35.26 3.86
3095 3956 7.040823 GGCATCGTAGTATTTGTAGTACTACCT 60.041 40.741 26.41 18.52 45.95 3.08
3100 3961 7.760131 TTTGGCATCGTAGTATTTGTAGTAC 57.240 36.000 0.00 0.00 0.00 2.73
3104 3965 7.011016 CACTCATTTGGCATCGTAGTATTTGTA 59.989 37.037 0.00 0.00 0.00 2.41
3105 3966 5.880332 ACTCATTTGGCATCGTAGTATTTGT 59.120 36.000 0.00 0.00 0.00 2.83
3106 3967 6.037062 TCACTCATTTGGCATCGTAGTATTTG 59.963 38.462 0.00 0.00 0.00 2.32
3107 3968 6.112734 TCACTCATTTGGCATCGTAGTATTT 58.887 36.000 0.00 0.00 0.00 1.40
3108 3969 5.670485 TCACTCATTTGGCATCGTAGTATT 58.330 37.500 0.00 0.00 0.00 1.89
3109 3970 5.276461 TCACTCATTTGGCATCGTAGTAT 57.724 39.130 0.00 0.00 0.00 2.12
3110 3971 4.729227 TCACTCATTTGGCATCGTAGTA 57.271 40.909 0.00 0.00 0.00 1.82
3111 3972 3.610040 TCACTCATTTGGCATCGTAGT 57.390 42.857 0.00 0.00 0.00 2.73
3112 3973 5.490139 AATTCACTCATTTGGCATCGTAG 57.510 39.130 0.00 0.00 0.00 3.51
3113 3974 5.895636 AAATTCACTCATTTGGCATCGTA 57.104 34.783 0.00 0.00 0.00 3.43
3114 3975 4.789012 AAATTCACTCATTTGGCATCGT 57.211 36.364 0.00 0.00 0.00 3.73
3115 3976 5.639757 TGTAAATTCACTCATTTGGCATCG 58.360 37.500 0.00 0.00 0.00 3.84
3116 3977 7.887996 TTTGTAAATTCACTCATTTGGCATC 57.112 32.000 0.00 0.00 0.00 3.91
3117 3978 9.369904 GTATTTGTAAATTCACTCATTTGGCAT 57.630 29.630 0.00 0.00 0.00 4.40
3118 3979 7.540400 CGTATTTGTAAATTCACTCATTTGGCA 59.460 33.333 0.00 0.00 0.00 4.92
3119 3980 7.540745 ACGTATTTGTAAATTCACTCATTTGGC 59.459 33.333 0.00 0.00 0.00 4.52
3120 3981 8.964420 ACGTATTTGTAAATTCACTCATTTGG 57.036 30.769 0.00 0.00 0.00 3.28
3121 3982 9.825972 AGACGTATTTGTAAATTCACTCATTTG 57.174 29.630 0.00 0.00 0.00 2.32
3149 4010 8.517878 GGCTTCGTAGTATTTGTAGGATGTATA 58.482 37.037 0.00 0.00 0.00 1.47
3150 4011 7.014905 TGGCTTCGTAGTATTTGTAGGATGTAT 59.985 37.037 0.00 0.00 0.00 2.29
3151 4012 6.321945 TGGCTTCGTAGTATTTGTAGGATGTA 59.678 38.462 0.00 0.00 0.00 2.29
3152 4013 5.128171 TGGCTTCGTAGTATTTGTAGGATGT 59.872 40.000 0.00 0.00 0.00 3.06
3153 4014 5.597806 TGGCTTCGTAGTATTTGTAGGATG 58.402 41.667 0.00 0.00 0.00 3.51
3154 4015 5.864418 TGGCTTCGTAGTATTTGTAGGAT 57.136 39.130 0.00 0.00 0.00 3.24
3155 4016 5.664294 TTGGCTTCGTAGTATTTGTAGGA 57.336 39.130 0.00 0.00 0.00 2.94
3156 4017 6.537301 TCATTTGGCTTCGTAGTATTTGTAGG 59.463 38.462 0.00 0.00 0.00 3.18
3157 4018 7.277981 ACTCATTTGGCTTCGTAGTATTTGTAG 59.722 37.037 0.00 0.00 0.00 2.74
3158 4019 7.064134 CACTCATTTGGCTTCGTAGTATTTGTA 59.936 37.037 0.00 0.00 0.00 2.41
3159 4020 5.938125 ACTCATTTGGCTTCGTAGTATTTGT 59.062 36.000 0.00 0.00 0.00 2.83
3160 4021 6.092122 TCACTCATTTGGCTTCGTAGTATTTG 59.908 38.462 0.00 0.00 0.00 2.32
3161 4022 6.170506 TCACTCATTTGGCTTCGTAGTATTT 58.829 36.000 0.00 0.00 0.00 1.40
3162 4023 5.730550 TCACTCATTTGGCTTCGTAGTATT 58.269 37.500 0.00 0.00 0.00 1.89
3163 4024 5.339008 TCACTCATTTGGCTTCGTAGTAT 57.661 39.130 0.00 0.00 0.00 2.12
3164 4025 4.794278 TCACTCATTTGGCTTCGTAGTA 57.206 40.909 0.00 0.00 0.00 1.82
3165 4026 3.678056 TCACTCATTTGGCTTCGTAGT 57.322 42.857 0.00 0.00 0.00 2.73
3166 4027 5.551760 AATTCACTCATTTGGCTTCGTAG 57.448 39.130 0.00 0.00 0.00 3.51
3167 4028 5.957842 AAATTCACTCATTTGGCTTCGTA 57.042 34.783 0.00 0.00 0.00 3.43
3168 4029 4.853924 AAATTCACTCATTTGGCTTCGT 57.146 36.364 0.00 0.00 0.00 3.85
3169 4030 5.698832 TGTAAATTCACTCATTTGGCTTCG 58.301 37.500 0.00 0.00 0.00 3.79
3175 4036 9.825972 AGACGTATTTGTAAATTCACTCATTTG 57.174 29.630 0.00 0.00 0.00 2.32
3211 4072 8.131100 TGTACTTCCTCCGTTTCTAAATATACG 58.869 37.037 0.00 0.00 0.00 3.06
3212 4073 9.978044 ATGTACTTCCTCCGTTTCTAAATATAC 57.022 33.333 0.00 0.00 0.00 1.47
3216 4077 8.755977 TCTAATGTACTTCCTCCGTTTCTAAAT 58.244 33.333 0.00 0.00 0.00 1.40
3217 4078 8.125978 TCTAATGTACTTCCTCCGTTTCTAAA 57.874 34.615 0.00 0.00 0.00 1.85
3218 4079 7.707624 TCTAATGTACTTCCTCCGTTTCTAA 57.292 36.000 0.00 0.00 0.00 2.10
3219 4080 7.893124 ATCTAATGTACTTCCTCCGTTTCTA 57.107 36.000 0.00 0.00 0.00 2.10
3220 4081 6.793505 ATCTAATGTACTTCCTCCGTTTCT 57.206 37.500 0.00 0.00 0.00 2.52
3223 4084 9.364653 ACTATAATCTAATGTACTTCCTCCGTT 57.635 33.333 0.00 0.00 0.00 4.44
3224 4085 8.937207 ACTATAATCTAATGTACTTCCTCCGT 57.063 34.615 0.00 0.00 0.00 4.69
3225 4086 9.627395 CAACTATAATCTAATGTACTTCCTCCG 57.373 37.037 0.00 0.00 0.00 4.63
3226 4087 9.425577 GCAACTATAATCTAATGTACTTCCTCC 57.574 37.037 0.00 0.00 0.00 4.30
3227 4088 9.425577 GGCAACTATAATCTAATGTACTTCCTC 57.574 37.037 0.00 0.00 0.00 3.71
3228 4089 8.376270 GGGCAACTATAATCTAATGTACTTCCT 58.624 37.037 0.00 0.00 0.00 3.36
3229 4090 7.606839 GGGGCAACTATAATCTAATGTACTTCC 59.393 40.741 0.00 0.00 0.00 3.46
3230 4091 7.606839 GGGGGCAACTATAATCTAATGTACTTC 59.393 40.741 0.00 0.00 0.00 3.01
3231 4092 7.073215 TGGGGGCAACTATAATCTAATGTACTT 59.927 37.037 0.00 0.00 0.00 2.24
3232 4093 6.561070 TGGGGGCAACTATAATCTAATGTACT 59.439 38.462 0.00 0.00 0.00 2.73
3233 4094 6.775708 TGGGGGCAACTATAATCTAATGTAC 58.224 40.000 0.00 0.00 0.00 2.90
3234 4095 7.395525 TTGGGGGCAACTATAATCTAATGTA 57.604 36.000 0.00 0.00 0.00 2.29
3235 4096 5.922960 TGGGGGCAACTATAATCTAATGT 57.077 39.130 0.00 0.00 0.00 2.71
3236 4097 7.069331 TGTTTTGGGGGCAACTATAATCTAATG 59.931 37.037 0.00 0.00 0.00 1.90
3237 4098 7.129425 TGTTTTGGGGGCAACTATAATCTAAT 58.871 34.615 0.00 0.00 0.00 1.73
3238 4099 6.494952 TGTTTTGGGGGCAACTATAATCTAA 58.505 36.000 0.00 0.00 0.00 2.10
3239 4100 6.080969 TGTTTTGGGGGCAACTATAATCTA 57.919 37.500 0.00 0.00 0.00 1.98
3240 4101 4.941713 TGTTTTGGGGGCAACTATAATCT 58.058 39.130 0.00 0.00 0.00 2.40
3241 4102 5.416083 GTTGTTTTGGGGGCAACTATAATC 58.584 41.667 0.00 0.00 39.30 1.75
3242 4103 4.224147 GGTTGTTTTGGGGGCAACTATAAT 59.776 41.667 0.00 0.00 41.36 1.28
3243 4104 3.579151 GGTTGTTTTGGGGGCAACTATAA 59.421 43.478 0.00 0.00 41.36 0.98
3244 4105 3.166679 GGTTGTTTTGGGGGCAACTATA 58.833 45.455 0.00 0.00 41.36 1.31
3245 4106 1.974957 GGTTGTTTTGGGGGCAACTAT 59.025 47.619 0.00 0.00 41.36 2.12
3246 4107 1.415200 GGTTGTTTTGGGGGCAACTA 58.585 50.000 0.00 0.00 41.36 2.24
3247 4108 1.341913 GGGTTGTTTTGGGGGCAACT 61.342 55.000 0.00 0.00 41.36 3.16
3248 4109 1.147376 GGGTTGTTTTGGGGGCAAC 59.853 57.895 0.00 0.00 41.02 4.17
3249 4110 0.914417 TTGGGTTGTTTTGGGGGCAA 60.914 50.000 0.00 0.00 0.00 4.52
3250 4111 0.695803 ATTGGGTTGTTTTGGGGGCA 60.696 50.000 0.00 0.00 0.00 5.36
3251 4112 0.250684 CATTGGGTTGTTTTGGGGGC 60.251 55.000 0.00 0.00 0.00 5.80
3252 4113 1.428869 TCATTGGGTTGTTTTGGGGG 58.571 50.000 0.00 0.00 0.00 5.40
3253 4114 2.290197 CCATCATTGGGTTGTTTTGGGG 60.290 50.000 0.00 0.00 39.56 4.96
3254 4115 2.636893 TCCATCATTGGGTTGTTTTGGG 59.363 45.455 0.00 0.00 43.81 4.12
3255 4116 3.663025 GTCCATCATTGGGTTGTTTTGG 58.337 45.455 0.00 0.00 43.81 3.28
3256 4117 3.316283 CGTCCATCATTGGGTTGTTTTG 58.684 45.455 0.00 0.00 43.81 2.44
3257 4118 2.298729 CCGTCCATCATTGGGTTGTTTT 59.701 45.455 0.00 0.00 43.81 2.43
3258 4119 1.892474 CCGTCCATCATTGGGTTGTTT 59.108 47.619 0.00 0.00 43.81 2.83
3259 4120 1.074727 TCCGTCCATCATTGGGTTGTT 59.925 47.619 0.00 0.00 43.81 2.83
3260 4121 0.695924 TCCGTCCATCATTGGGTTGT 59.304 50.000 0.00 0.00 43.81 3.32
3261 4122 1.094785 GTCCGTCCATCATTGGGTTG 58.905 55.000 0.00 0.00 43.81 3.77
3262 4123 0.034477 GGTCCGTCCATCATTGGGTT 60.034 55.000 0.00 0.00 43.81 4.11
3263 4124 1.204786 TGGTCCGTCCATCATTGGGT 61.205 55.000 0.00 0.00 43.81 4.51
3264 4125 0.034574 TTGGTCCGTCCATCATTGGG 60.035 55.000 0.00 0.00 46.60 4.12
3265 4126 1.094785 GTTGGTCCGTCCATCATTGG 58.905 55.000 0.00 0.00 46.60 3.16
3266 4127 1.819928 TGTTGGTCCGTCCATCATTG 58.180 50.000 4.29 0.00 46.60 2.82
3269 4130 0.251916 GGATGTTGGTCCGTCCATCA 59.748 55.000 13.94 9.13 46.60 3.07
3270 4131 0.541863 AGGATGTTGGTCCGTCCATC 59.458 55.000 2.54 6.66 46.60 3.51
3271 4132 0.541863 GAGGATGTTGGTCCGTCCAT 59.458 55.000 2.54 0.00 46.60 3.41
3272 4133 0.834261 TGAGGATGTTGGTCCGTCCA 60.834 55.000 2.54 0.00 42.08 4.02
3273 4134 0.541863 ATGAGGATGTTGGTCCGTCC 59.458 55.000 0.00 0.00 43.27 4.79
3274 4135 1.207089 TGATGAGGATGTTGGTCCGTC 59.793 52.381 0.00 0.00 43.27 4.79
3275 4136 1.066143 GTGATGAGGATGTTGGTCCGT 60.066 52.381 0.00 0.00 43.27 4.69
3276 4137 1.656652 GTGATGAGGATGTTGGTCCG 58.343 55.000 0.00 0.00 43.27 4.79
3277 4138 1.656652 CGTGATGAGGATGTTGGTCC 58.343 55.000 0.00 0.00 38.62 4.46
3278 4139 1.066143 ACCGTGATGAGGATGTTGGTC 60.066 52.381 0.00 0.00 0.00 4.02
3279 4140 0.984230 ACCGTGATGAGGATGTTGGT 59.016 50.000 0.00 0.00 0.00 3.67
3280 4141 2.009774 GAACCGTGATGAGGATGTTGG 58.990 52.381 0.00 0.00 0.00 3.77
3281 4142 2.009774 GGAACCGTGATGAGGATGTTG 58.990 52.381 0.00 0.00 0.00 3.33
3282 4143 1.065418 GGGAACCGTGATGAGGATGTT 60.065 52.381 0.00 0.00 40.86 2.71
3283 4144 0.541863 GGGAACCGTGATGAGGATGT 59.458 55.000 0.00 0.00 40.86 3.06
3284 4145 3.386543 GGGAACCGTGATGAGGATG 57.613 57.895 0.00 0.00 40.86 3.51
3297 4158 2.414806 GACGAGAGGAAAACTGGGAAC 58.585 52.381 0.00 0.00 0.00 3.62
3298 4159 1.346722 GGACGAGAGGAAAACTGGGAA 59.653 52.381 0.00 0.00 0.00 3.97
3299 4160 0.974383 GGACGAGAGGAAAACTGGGA 59.026 55.000 0.00 0.00 0.00 4.37
3300 4161 0.977395 AGGACGAGAGGAAAACTGGG 59.023 55.000 0.00 0.00 0.00 4.45
3301 4162 2.417719 CAAGGACGAGAGGAAAACTGG 58.582 52.381 0.00 0.00 0.00 4.00
3302 4163 2.417719 CCAAGGACGAGAGGAAAACTG 58.582 52.381 0.00 0.00 0.00 3.16
3303 4164 1.270893 GCCAAGGACGAGAGGAAAACT 60.271 52.381 0.00 0.00 0.00 2.66
3304 4165 1.157585 GCCAAGGACGAGAGGAAAAC 58.842 55.000 0.00 0.00 0.00 2.43
3305 4166 0.320421 CGCCAAGGACGAGAGGAAAA 60.320 55.000 0.00 0.00 0.00 2.29
3306 4167 1.292223 CGCCAAGGACGAGAGGAAA 59.708 57.895 0.00 0.00 0.00 3.13
3307 4168 2.646175 CCGCCAAGGACGAGAGGAA 61.646 63.158 0.00 0.00 45.00 3.36
3308 4169 3.068691 CCGCCAAGGACGAGAGGA 61.069 66.667 0.00 0.00 45.00 3.71
3309 4170 4.821589 GCCGCCAAGGACGAGAGG 62.822 72.222 0.00 0.00 45.00 3.69
3310 4171 3.764466 AGCCGCCAAGGACGAGAG 61.764 66.667 0.00 0.00 45.00 3.20
3311 4172 4.069232 CAGCCGCCAAGGACGAGA 62.069 66.667 0.00 0.00 45.00 4.04
3314 4175 4.697756 TTCCAGCCGCCAAGGACG 62.698 66.667 0.00 0.00 45.00 4.79
3315 4176 3.056328 GTTCCAGCCGCCAAGGAC 61.056 66.667 0.00 0.00 45.00 3.85
3316 4177 4.344865 GGTTCCAGCCGCCAAGGA 62.345 66.667 0.00 0.00 45.00 3.36
3318 4179 2.876368 CTAGGGTTCCAGCCGCCAAG 62.876 65.000 0.00 0.00 41.56 3.61
3319 4180 2.931105 TAGGGTTCCAGCCGCCAA 60.931 61.111 0.00 0.00 41.56 4.52
3320 4181 3.399181 CTAGGGTTCCAGCCGCCA 61.399 66.667 0.00 0.00 41.56 5.69
3321 4182 4.858680 GCTAGGGTTCCAGCCGCC 62.859 72.222 0.00 0.00 41.56 6.13
3325 4186 4.858680 GGCGGCTAGGGTTCCAGC 62.859 72.222 0.00 0.00 37.05 4.85
3326 4187 4.530857 CGGCGGCTAGGGTTCCAG 62.531 72.222 7.61 0.00 0.00 3.86
3345 4206 3.787001 GAAGACCGGCCTCCCCTG 61.787 72.222 0.00 0.00 0.00 4.45
3348 4209 3.327404 TTGGAAGACCGGCCTCCC 61.327 66.667 0.00 0.00 39.42 4.30
3349 4210 2.046217 GTTGGAAGACCGGCCTCC 60.046 66.667 0.00 5.64 39.42 4.30
3350 4211 2.434359 CGTTGGAAGACCGGCCTC 60.434 66.667 0.00 0.00 39.42 4.70
3351 4212 4.699522 GCGTTGGAAGACCGGCCT 62.700 66.667 0.00 0.00 39.42 5.19
3356 4217 3.119096 GAGCGGCGTTGGAAGACC 61.119 66.667 9.37 0.00 0.00 3.85
3357 4218 2.048127 AGAGCGGCGTTGGAAGAC 60.048 61.111 9.37 0.00 0.00 3.01
3358 4219 2.261671 GAGAGCGGCGTTGGAAGA 59.738 61.111 9.37 0.00 0.00 2.87
3359 4220 2.815647 GGAGAGCGGCGTTGGAAG 60.816 66.667 9.37 0.00 0.00 3.46
3360 4221 4.735132 CGGAGAGCGGCGTTGGAA 62.735 66.667 9.37 0.00 0.00 3.53
3397 4258 4.112341 CCACCGACGACCGAGGTC 62.112 72.222 12.07 12.07 41.76 3.85
3398 4259 4.962836 ACCACCGACGACCGAGGT 62.963 66.667 0.00 0.00 41.76 3.85
3399 4260 4.415332 CACCACCGACGACCGAGG 62.415 72.222 0.00 1.98 41.76 4.63
3400 4261 3.359523 TCACCACCGACGACCGAG 61.360 66.667 0.00 0.00 41.76 4.63


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.