Multiple sequence alignment - TraesCS4B01G081900
BLAST Results
Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.
qseqid | sseqid | percentage.identical | alignment.length | no.mismatch | no.gap.openings | qstart | qend | sstart | send | evalue | bitscore | |
---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS4B01G081900 | chr4B | 100.000 | 3519 | 0 | 0 | 1 | 3519 | 80592574 | 80596092 | 0.000000e+00 | 6499.0 |
1 | TraesCS4B01G081900 | chr4B | 83.472 | 1319 | 143 | 54 | 2195 | 3465 | 68730183 | 68728892 | 0.000000e+00 | 1158.0 |
2 | TraesCS4B01G081900 | chr4B | 81.446 | 927 | 107 | 41 | 2560 | 3447 | 68959248 | 68958348 | 0.000000e+00 | 699.0 |
3 | TraesCS4B01G081900 | chr4B | 88.521 | 514 | 53 | 3 | 1219 | 1726 | 80557164 | 80557677 | 4.990000e-173 | 617.0 |
4 | TraesCS4B01G081900 | chr4B | 88.521 | 514 | 53 | 3 | 1219 | 1726 | 80585834 | 80586347 | 4.990000e-173 | 617.0 |
5 | TraesCS4B01G081900 | chr4B | 90.489 | 368 | 32 | 1 | 1223 | 1590 | 68961542 | 68961178 | 1.900000e-132 | 483.0 |
6 | TraesCS4B01G081900 | chr4B | 87.879 | 264 | 16 | 6 | 176 | 430 | 68962440 | 68962184 | 2.660000e-76 | 296.0 |
7 | TraesCS4B01G081900 | chr4B | 84.387 | 269 | 34 | 5 | 2195 | 2457 | 68959814 | 68959548 | 1.250000e-64 | 257.0 |
8 | TraesCS4B01G081900 | chr4B | 89.474 | 190 | 11 | 4 | 207 | 393 | 68730562 | 68730379 | 7.600000e-57 | 231.0 |
9 | TraesCS4B01G081900 | chr4B | 75.641 | 390 | 69 | 18 | 2255 | 2641 | 80559198 | 80559564 | 1.680000e-38 | 171.0 |
10 | TraesCS4B01G081900 | chr4B | 75.641 | 390 | 69 | 18 | 2255 | 2641 | 80587868 | 80588234 | 1.680000e-38 | 171.0 |
11 | TraesCS4B01G081900 | chr4B | 83.085 | 201 | 19 | 7 | 920 | 1114 | 80556912 | 80557103 | 6.040000e-38 | 169.0 |
12 | TraesCS4B01G081900 | chr4B | 83.085 | 201 | 19 | 7 | 920 | 1114 | 80585582 | 80585773 | 6.040000e-38 | 169.0 |
13 | TraesCS4B01G081900 | chr4D | 88.831 | 1737 | 112 | 39 | 1809 | 3517 | 54475629 | 54477311 | 0.000000e+00 | 2058.0 |
14 | TraesCS4B01G081900 | chr4D | 89.990 | 1029 | 63 | 22 | 2149 | 3156 | 54605416 | 54606425 | 0.000000e+00 | 1293.0 |
15 | TraesCS4B01G081900 | chr4D | 83.948 | 1302 | 135 | 46 | 2195 | 3447 | 47334689 | 47333413 | 0.000000e+00 | 1179.0 |
16 | TraesCS4B01G081900 | chr4D | 85.232 | 948 | 85 | 29 | 749 | 1690 | 54604112 | 54605010 | 0.000000e+00 | 924.0 |
17 | TraesCS4B01G081900 | chr4D | 89.258 | 512 | 49 | 2 | 1198 | 1706 | 47336600 | 47336092 | 1.380000e-178 | 636.0 |
18 | TraesCS4B01G081900 | chr4D | 88.212 | 509 | 53 | 4 | 1223 | 1727 | 54475103 | 54475608 | 5.030000e-168 | 601.0 |
19 | TraesCS4B01G081900 | chr4D | 91.477 | 352 | 25 | 3 | 2767 | 3113 | 54479578 | 54479929 | 2.460000e-131 | 479.0 |
20 | TraesCS4B01G081900 | chr4D | 90.305 | 361 | 31 | 2 | 1794 | 2151 | 54605026 | 54605385 | 1.480000e-128 | 470.0 |
21 | TraesCS4B01G081900 | chr4D | 85.470 | 351 | 38 | 8 | 799 | 1149 | 47336952 | 47336615 | 1.550000e-93 | 353.0 |
22 | TraesCS4B01G081900 | chr4D | 87.379 | 309 | 28 | 5 | 802 | 1107 | 54474744 | 54475044 | 9.350000e-91 | 344.0 |
23 | TraesCS4B01G081900 | chr4D | 91.053 | 190 | 12 | 4 | 522 | 710 | 54603942 | 54604127 | 5.830000e-63 | 252.0 |
24 | TraesCS4B01G081900 | chr4D | 90.155 | 193 | 10 | 7 | 522 | 710 | 54474513 | 54474700 | 3.510000e-60 | 243.0 |
25 | TraesCS4B01G081900 | chr4D | 86.099 | 223 | 16 | 7 | 214 | 430 | 54603691 | 54603904 | 3.530000e-55 | 226.0 |
26 | TraesCS4B01G081900 | chr4D | 83.268 | 257 | 29 | 10 | 902 | 1146 | 54446470 | 54446724 | 1.270000e-54 | 224.0 |
27 | TraesCS4B01G081900 | chr4D | 83.019 | 265 | 21 | 8 | 169 | 430 | 47337550 | 47337307 | 5.910000e-53 | 219.0 |
28 | TraesCS4B01G081900 | chr4D | 80.508 | 236 | 39 | 7 | 1906 | 2138 | 54448332 | 54448563 | 1.300000e-39 | 174.0 |
29 | TraesCS4B01G081900 | chr4A | 87.256 | 1538 | 116 | 25 | 1821 | 3339 | 542532786 | 542531310 | 0.000000e+00 | 1681.0 |
30 | TraesCS4B01G081900 | chr4A | 84.115 | 1322 | 134 | 42 | 2195 | 3465 | 551133542 | 551134838 | 0.000000e+00 | 1208.0 |
31 | TraesCS4B01G081900 | chr4A | 92.829 | 516 | 34 | 1 | 1215 | 1727 | 542533310 | 542532795 | 0.000000e+00 | 745.0 |
32 | TraesCS4B01G081900 | chr4A | 89.020 | 510 | 49 | 3 | 1223 | 1728 | 542555714 | 542555208 | 2.980000e-175 | 625.0 |
33 | TraesCS4B01G081900 | chr4A | 88.732 | 497 | 50 | 2 | 1210 | 1703 | 551132596 | 551133089 | 1.400000e-168 | 603.0 |
34 | TraesCS4B01G081900 | chr4A | 86.686 | 353 | 34 | 7 | 799 | 1146 | 551132228 | 551132572 | 2.560000e-101 | 379.0 |
35 | TraesCS4B01G081900 | chr4A | 85.196 | 358 | 36 | 9 | 802 | 1149 | 542533688 | 542533338 | 5.590000e-93 | 351.0 |
36 | TraesCS4B01G081900 | chr4A | 80.171 | 469 | 41 | 17 | 2 | 430 | 542534404 | 542533948 | 1.590000e-78 | 303.0 |
37 | TraesCS4B01G081900 | chr4A | 88.136 | 236 | 10 | 6 | 207 | 430 | 551131718 | 551131947 | 7.490000e-67 | 265.0 |
38 | TraesCS4B01G081900 | chr4A | 83.922 | 255 | 30 | 7 | 902 | 1146 | 542556013 | 542555760 | 2.110000e-57 | 233.0 |
39 | TraesCS4B01G081900 | chr4A | 90.756 | 119 | 9 | 1 | 592 | 710 | 551132027 | 551132143 | 1.310000e-34 | 158.0 |
40 | TraesCS4B01G081900 | chr6D | 81.928 | 83 | 7 | 3 | 1725 | 1804 | 72021739 | 72021816 | 2.930000e-06 | 63.9 |
41 | TraesCS4B01G081900 | chr3D | 97.143 | 35 | 1 | 0 | 593 | 627 | 91709462 | 91709428 | 3.790000e-05 | 60.2 |
42 | TraesCS4B01G081900 | chr6A | 80.723 | 83 | 8 | 3 | 1725 | 1804 | 88767598 | 88767675 | 1.360000e-04 | 58.4 |
43 | TraesCS4B01G081900 | chr5B | 100.000 | 30 | 0 | 0 | 1767 | 1796 | 290819768 | 290819797 | 4.910000e-04 | 56.5 |
These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.
query | scaffold | start | end | length | rev.comp | avg.bitscore | max.bitscore | avg.percent.identical | query.start | query.end | num_hsp | groupid | homo_length | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS4B01G081900 | chr4B | 80592574 | 80596092 | 3518 | False | 6499.00 | 6499 | 100.000000 | 1 | 3519 | 1 | chr4B.!!$F1 | 3518 |
1 | TraesCS4B01G081900 | chr4B | 68728892 | 68730562 | 1670 | True | 694.50 | 1158 | 86.473000 | 207 | 3465 | 2 | chr4B.!!$R1 | 3258 |
2 | TraesCS4B01G081900 | chr4B | 68958348 | 68962440 | 4092 | True | 433.75 | 699 | 86.050250 | 176 | 3447 | 4 | chr4B.!!$R2 | 3271 |
3 | TraesCS4B01G081900 | chr4B | 80556912 | 80559564 | 2652 | False | 319.00 | 617 | 82.415667 | 920 | 2641 | 3 | chr4B.!!$F2 | 1721 |
4 | TraesCS4B01G081900 | chr4B | 80585582 | 80588234 | 2652 | False | 319.00 | 617 | 82.415667 | 920 | 2641 | 3 | chr4B.!!$F3 | 1721 |
5 | TraesCS4B01G081900 | chr4D | 54474513 | 54479929 | 5416 | False | 745.00 | 2058 | 89.210800 | 522 | 3517 | 5 | chr4D.!!$F2 | 2995 |
6 | TraesCS4B01G081900 | chr4D | 54603691 | 54606425 | 2734 | False | 633.00 | 1293 | 88.535800 | 214 | 3156 | 5 | chr4D.!!$F3 | 2942 |
7 | TraesCS4B01G081900 | chr4D | 47333413 | 47337550 | 4137 | True | 596.75 | 1179 | 85.423750 | 169 | 3447 | 4 | chr4D.!!$R1 | 3278 |
8 | TraesCS4B01G081900 | chr4A | 542531310 | 542534404 | 3094 | True | 770.00 | 1681 | 86.363000 | 2 | 3339 | 4 | chr4A.!!$R1 | 3337 |
9 | TraesCS4B01G081900 | chr4A | 551131718 | 551134838 | 3120 | False | 522.60 | 1208 | 87.685000 | 207 | 3465 | 5 | chr4A.!!$F1 | 3258 |
10 | TraesCS4B01G081900 | chr4A | 542555208 | 542556013 | 805 | True | 429.00 | 625 | 86.471000 | 902 | 1728 | 2 | chr4A.!!$R2 | 826 |
AutoCloner calculated primer pairsThese primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
796 | 961 | 0.105224 | TCGTTCCCGCTCTGTTCAAA | 59.895 | 50.0 | 0.0 | 0.0 | 0.0 | 2.69 | F |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
2618 | 4145 | 0.320374 | TGCCCACAGTTCTACTTCCG | 59.68 | 55.0 | 0.0 | 0.0 | 0.0 | 4.3 | R |
All possible primersListed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
64 | 65 | 8.457238 | AAAAGTTGTCTTTGCTCTAAGAATCT | 57.543 | 30.769 | 0.00 | 0.00 | 42.26 | 2.40 |
73 | 74 | 7.716998 | TCTTTGCTCTAAGAATCTGAAACAAGT | 59.283 | 33.333 | 0.00 | 0.00 | 31.45 | 3.16 |
77 | 78 | 8.367911 | TGCTCTAAGAATCTGAAACAAGTCTTA | 58.632 | 33.333 | 0.00 | 0.00 | 0.00 | 2.10 |
89 | 90 | 9.775854 | CTGAAACAAGTCTTATATGGATCTGAT | 57.224 | 33.333 | 0.00 | 0.00 | 0.00 | 2.90 |
120 | 125 | 5.277857 | AGATAAATCCAACACCCTACTCG | 57.722 | 43.478 | 0.00 | 0.00 | 0.00 | 4.18 |
145 | 150 | 3.353836 | CGAACCGGTGGTGCCAAG | 61.354 | 66.667 | 8.52 | 0.00 | 35.34 | 3.61 |
151 | 156 | 1.515521 | CCGGTGGTGCCAAGTTTCTC | 61.516 | 60.000 | 0.00 | 0.00 | 36.97 | 2.87 |
184 | 206 | 2.162338 | TTGTCCAAGACGGGCCTACG | 62.162 | 60.000 | 0.84 | 0.00 | 39.41 | 3.51 |
204 | 226 | 3.316588 | ACGAGTCTATGATACAGTGGCAG | 59.683 | 47.826 | 0.00 | 0.00 | 0.00 | 4.85 |
205 | 227 | 3.304996 | CGAGTCTATGATACAGTGGCAGG | 60.305 | 52.174 | 0.00 | 0.00 | 0.00 | 4.85 |
230 | 271 | 1.333177 | GCCGTAGAGTCCCATCAGAT | 58.667 | 55.000 | 0.00 | 0.00 | 0.00 | 2.90 |
272 | 314 | 1.203100 | GGGCAAATCAGGGCATCCTAT | 60.203 | 52.381 | 0.00 | 0.00 | 42.67 | 2.57 |
281 | 323 | 0.685097 | GGGCATCCTATAGGCGTTCA | 59.315 | 55.000 | 14.50 | 0.00 | 35.10 | 3.18 |
317 | 361 | 0.109086 | TCCGCTTGCTTCTTCTCTCG | 60.109 | 55.000 | 0.00 | 0.00 | 0.00 | 4.04 |
396 | 440 | 2.755650 | CGTTGTGAGCCTTGAGTACTT | 58.244 | 47.619 | 0.00 | 0.00 | 0.00 | 2.24 |
439 | 509 | 0.528017 | GTCCTTGGCTAGCCTTTTGC | 59.472 | 55.000 | 33.07 | 17.08 | 41.71 | 3.68 |
454 | 524 | 6.220579 | GCCTTTTGCTTCTTTTCTTTCATC | 57.779 | 37.500 | 0.00 | 0.00 | 36.87 | 2.92 |
456 | 526 | 5.698089 | CCTTTTGCTTCTTTTCTTTCATCCC | 59.302 | 40.000 | 0.00 | 0.00 | 0.00 | 3.85 |
457 | 527 | 6.463472 | CCTTTTGCTTCTTTTCTTTCATCCCT | 60.463 | 38.462 | 0.00 | 0.00 | 0.00 | 4.20 |
458 | 528 | 7.255942 | CCTTTTGCTTCTTTTCTTTCATCCCTA | 60.256 | 37.037 | 0.00 | 0.00 | 0.00 | 3.53 |
459 | 529 | 6.575162 | TTGCTTCTTTTCTTTCATCCCTAC | 57.425 | 37.500 | 0.00 | 0.00 | 0.00 | 3.18 |
460 | 530 | 5.630121 | TGCTTCTTTTCTTTCATCCCTACA | 58.370 | 37.500 | 0.00 | 0.00 | 0.00 | 2.74 |
461 | 531 | 6.248433 | TGCTTCTTTTCTTTCATCCCTACAT | 58.752 | 36.000 | 0.00 | 0.00 | 0.00 | 2.29 |
462 | 532 | 6.151648 | TGCTTCTTTTCTTTCATCCCTACATG | 59.848 | 38.462 | 0.00 | 0.00 | 0.00 | 3.21 |
463 | 533 | 6.151817 | GCTTCTTTTCTTTCATCCCTACATGT | 59.848 | 38.462 | 2.69 | 2.69 | 0.00 | 3.21 |
464 | 534 | 7.452880 | TTCTTTTCTTTCATCCCTACATGTG | 57.547 | 36.000 | 9.11 | 0.00 | 0.00 | 3.21 |
465 | 535 | 5.415701 | TCTTTTCTTTCATCCCTACATGTGC | 59.584 | 40.000 | 9.11 | 0.00 | 0.00 | 4.57 |
466 | 536 | 3.998913 | TCTTTCATCCCTACATGTGCA | 57.001 | 42.857 | 9.11 | 0.00 | 0.00 | 4.57 |
467 | 537 | 4.508551 | TCTTTCATCCCTACATGTGCAT | 57.491 | 40.909 | 9.11 | 0.00 | 0.00 | 3.96 |
468 | 538 | 4.858850 | TCTTTCATCCCTACATGTGCATT | 58.141 | 39.130 | 9.11 | 0.00 | 0.00 | 3.56 |
469 | 539 | 4.641541 | TCTTTCATCCCTACATGTGCATTG | 59.358 | 41.667 | 9.11 | 0.09 | 0.00 | 2.82 |
470 | 540 | 3.929955 | TCATCCCTACATGTGCATTGA | 57.070 | 42.857 | 9.11 | 2.59 | 0.00 | 2.57 |
471 | 541 | 3.812262 | TCATCCCTACATGTGCATTGAG | 58.188 | 45.455 | 9.11 | 0.00 | 0.00 | 3.02 |
472 | 542 | 3.455543 | TCATCCCTACATGTGCATTGAGA | 59.544 | 43.478 | 9.11 | 0.00 | 0.00 | 3.27 |
473 | 543 | 3.998913 | TCCCTACATGTGCATTGAGAA | 57.001 | 42.857 | 9.11 | 0.00 | 0.00 | 2.87 |
474 | 544 | 3.609853 | TCCCTACATGTGCATTGAGAAC | 58.390 | 45.455 | 9.11 | 0.00 | 0.00 | 3.01 |
475 | 545 | 3.264193 | TCCCTACATGTGCATTGAGAACT | 59.736 | 43.478 | 9.11 | 0.00 | 0.00 | 3.01 |
476 | 546 | 4.012374 | CCCTACATGTGCATTGAGAACTT | 58.988 | 43.478 | 9.11 | 0.00 | 0.00 | 2.66 |
477 | 547 | 4.460382 | CCCTACATGTGCATTGAGAACTTT | 59.540 | 41.667 | 9.11 | 0.00 | 0.00 | 2.66 |
478 | 548 | 5.392380 | CCCTACATGTGCATTGAGAACTTTC | 60.392 | 44.000 | 9.11 | 0.00 | 0.00 | 2.62 |
479 | 549 | 4.510038 | ACATGTGCATTGAGAACTTTCC | 57.490 | 40.909 | 0.00 | 0.00 | 0.00 | 3.13 |
480 | 550 | 3.058016 | ACATGTGCATTGAGAACTTTCCG | 60.058 | 43.478 | 0.00 | 0.00 | 0.00 | 4.30 |
481 | 551 | 2.844946 | TGTGCATTGAGAACTTTCCGA | 58.155 | 42.857 | 0.00 | 0.00 | 0.00 | 4.55 |
482 | 552 | 2.548057 | TGTGCATTGAGAACTTTCCGAC | 59.452 | 45.455 | 0.00 | 0.00 | 0.00 | 4.79 |
483 | 553 | 1.798223 | TGCATTGAGAACTTTCCGACG | 59.202 | 47.619 | 0.00 | 0.00 | 0.00 | 5.12 |
484 | 554 | 1.128692 | GCATTGAGAACTTTCCGACGG | 59.871 | 52.381 | 7.84 | 7.84 | 0.00 | 4.79 |
485 | 555 | 1.732259 | CATTGAGAACTTTCCGACGGG | 59.268 | 52.381 | 15.25 | 0.00 | 0.00 | 5.28 |
486 | 556 | 0.754472 | TTGAGAACTTTCCGACGGGT | 59.246 | 50.000 | 15.25 | 0.52 | 33.83 | 5.28 |
487 | 557 | 1.619654 | TGAGAACTTTCCGACGGGTA | 58.380 | 50.000 | 15.25 | 0.00 | 33.83 | 3.69 |
488 | 558 | 1.270550 | TGAGAACTTTCCGACGGGTAC | 59.729 | 52.381 | 15.25 | 0.51 | 33.83 | 3.34 |
502 | 572 | 1.666580 | GGTACCAGATAGGCCGAGC | 59.333 | 63.158 | 7.15 | 0.00 | 43.14 | 5.03 |
503 | 573 | 0.828343 | GGTACCAGATAGGCCGAGCT | 60.828 | 60.000 | 7.15 | 0.00 | 43.14 | 4.09 |
504 | 574 | 1.547223 | GGTACCAGATAGGCCGAGCTA | 60.547 | 57.143 | 7.15 | 0.00 | 43.14 | 3.32 |
505 | 575 | 1.813786 | GTACCAGATAGGCCGAGCTAG | 59.186 | 57.143 | 2.37 | 0.00 | 43.14 | 3.42 |
506 | 576 | 0.540830 | ACCAGATAGGCCGAGCTAGG | 60.541 | 60.000 | 8.78 | 8.78 | 43.14 | 3.02 |
507 | 577 | 0.251386 | CCAGATAGGCCGAGCTAGGA | 60.251 | 60.000 | 18.16 | 0.00 | 0.00 | 2.94 |
508 | 578 | 1.621992 | CAGATAGGCCGAGCTAGGAA | 58.378 | 55.000 | 18.16 | 1.07 | 0.00 | 3.36 |
509 | 579 | 1.543802 | CAGATAGGCCGAGCTAGGAAG | 59.456 | 57.143 | 18.16 | 0.00 | 0.00 | 3.46 |
510 | 580 | 0.892063 | GATAGGCCGAGCTAGGAAGG | 59.108 | 60.000 | 18.16 | 2.16 | 0.00 | 3.46 |
511 | 581 | 0.483328 | ATAGGCCGAGCTAGGAAGGA | 59.517 | 55.000 | 18.16 | 0.00 | 0.00 | 3.36 |
512 | 582 | 0.260816 | TAGGCCGAGCTAGGAAGGAA | 59.739 | 55.000 | 18.16 | 0.00 | 0.00 | 3.36 |
513 | 583 | 1.144276 | GGCCGAGCTAGGAAGGAAC | 59.856 | 63.158 | 18.16 | 0.00 | 0.00 | 3.62 |
540 | 610 | 6.050432 | TCAGATGTGCATTTTGCTTCTTTTT | 58.950 | 32.000 | 0.00 | 0.00 | 45.31 | 1.94 |
547 | 617 | 7.066043 | TGTGCATTTTGCTTCTTTTTCTTTCAT | 59.934 | 29.630 | 0.00 | 0.00 | 45.31 | 2.57 |
549 | 619 | 7.280428 | TGCATTTTGCTTCTTTTTCTTTCATCA | 59.720 | 29.630 | 0.75 | 0.00 | 45.31 | 3.07 |
643 | 714 | 8.379331 | AGAAGCTCTATACAGGTTTCTTTCTTT | 58.621 | 33.333 | 0.00 | 0.00 | 34.21 | 2.52 |
645 | 716 | 8.329203 | AGCTCTATACAGGTTTCTTTCTTTTG | 57.671 | 34.615 | 0.00 | 0.00 | 0.00 | 2.44 |
736 | 810 | 3.399234 | AAAAAGGAGGAATGCCCCC | 57.601 | 52.632 | 0.00 | 0.00 | 34.66 | 5.40 |
737 | 811 | 0.614697 | AAAAAGGAGGAATGCCCCCG | 60.615 | 55.000 | 0.00 | 0.00 | 34.66 | 5.73 |
738 | 812 | 2.514516 | AAAAGGAGGAATGCCCCCGG | 62.515 | 60.000 | 0.00 | 0.00 | 34.66 | 5.73 |
751 | 825 | 4.809496 | CCCGGCCTCTGCATGCTT | 62.809 | 66.667 | 20.33 | 0.00 | 40.13 | 3.91 |
752 | 826 | 3.515286 | CCGGCCTCTGCATGCTTG | 61.515 | 66.667 | 20.33 | 11.88 | 40.13 | 4.01 |
792 | 957 | 2.342648 | GGTCGTTCCCGCTCTGTT | 59.657 | 61.111 | 0.00 | 0.00 | 0.00 | 3.16 |
793 | 958 | 1.737008 | GGTCGTTCCCGCTCTGTTC | 60.737 | 63.158 | 0.00 | 0.00 | 0.00 | 3.18 |
794 | 959 | 1.006571 | GTCGTTCCCGCTCTGTTCA | 60.007 | 57.895 | 0.00 | 0.00 | 0.00 | 3.18 |
795 | 960 | 0.599204 | GTCGTTCCCGCTCTGTTCAA | 60.599 | 55.000 | 0.00 | 0.00 | 0.00 | 2.69 |
796 | 961 | 0.105224 | TCGTTCCCGCTCTGTTCAAA | 59.895 | 50.000 | 0.00 | 0.00 | 0.00 | 2.69 |
797 | 962 | 1.156736 | CGTTCCCGCTCTGTTCAAAT | 58.843 | 50.000 | 0.00 | 0.00 | 0.00 | 2.32 |
874 | 1047 | 2.503061 | CTCCTGCATGACTCGGGG | 59.497 | 66.667 | 0.00 | 0.00 | 0.00 | 5.73 |
918 | 1091 | 3.441922 | TGCAGTGTAAAACAAAGTGCTGA | 59.558 | 39.130 | 10.06 | 0.00 | 34.50 | 4.26 |
936 | 1109 | 4.516698 | TGCTGAAGAGGACAACAAGATTTC | 59.483 | 41.667 | 0.00 | 0.00 | 0.00 | 2.17 |
949 | 1122 | 4.154942 | ACAAGATTTCCTTTCACTGCCAT | 58.845 | 39.130 | 0.00 | 0.00 | 31.42 | 4.40 |
953 | 1138 | 1.538047 | TTCCTTTCACTGCCATCAGC | 58.462 | 50.000 | 0.00 | 0.00 | 44.10 | 4.26 |
981 | 1172 | 6.599244 | TGATCTATGTTTTTCTGCTTACAGGG | 59.401 | 38.462 | 0.00 | 0.00 | 44.59 | 4.45 |
1008 | 1199 | 0.821517 | TAGGCGGCGAGATGAGAAAA | 59.178 | 50.000 | 12.98 | 0.00 | 0.00 | 2.29 |
1011 | 1202 | 1.576356 | GCGGCGAGATGAGAAAATCT | 58.424 | 50.000 | 12.98 | 0.00 | 39.66 | 2.40 |
1045 | 1236 | 5.046376 | TGCAAGAGATACTGGACTCATTTGA | 60.046 | 40.000 | 0.00 | 0.00 | 35.83 | 2.69 |
1108 | 1299 | 2.303022 | TCTAGGCATAGCATGGTAAGCC | 59.697 | 50.000 | 33.24 | 33.24 | 42.31 | 4.35 |
1151 | 1350 | 9.494271 | TCATTGAATCAGTAGCAATAATACTCC | 57.506 | 33.333 | 0.00 | 0.00 | 31.05 | 3.85 |
1152 | 1351 | 8.725148 | CATTGAATCAGTAGCAATAATACTCCC | 58.275 | 37.037 | 0.00 | 0.00 | 31.05 | 4.30 |
1155 | 1354 | 6.613153 | ATCAGTAGCAATAATACTCCCTCC | 57.387 | 41.667 | 0.00 | 0.00 | 31.05 | 4.30 |
1164 | 1363 | 6.775629 | GCAATAATACTCCCTCCATACCAAAA | 59.224 | 38.462 | 0.00 | 0.00 | 0.00 | 2.44 |
1169 | 1368 | 7.947782 | ATACTCCCTCCATACCAAAATAAGA | 57.052 | 36.000 | 0.00 | 0.00 | 0.00 | 2.10 |
1170 | 1369 | 6.253946 | ACTCCCTCCATACCAAAATAAGAG | 57.746 | 41.667 | 0.00 | 0.00 | 0.00 | 2.85 |
1172 | 1371 | 6.126739 | ACTCCCTCCATACCAAAATAAGAGTC | 60.127 | 42.308 | 0.00 | 0.00 | 0.00 | 3.36 |
1173 | 1372 | 5.057149 | CCCTCCATACCAAAATAAGAGTCG | 58.943 | 45.833 | 0.00 | 0.00 | 0.00 | 4.18 |
1174 | 1373 | 4.511826 | CCTCCATACCAAAATAAGAGTCGC | 59.488 | 45.833 | 0.00 | 0.00 | 0.00 | 5.19 |
1175 | 1374 | 5.353394 | TCCATACCAAAATAAGAGTCGCT | 57.647 | 39.130 | 0.00 | 0.00 | 0.00 | 4.93 |
1176 | 1375 | 5.116180 | TCCATACCAAAATAAGAGTCGCTG | 58.884 | 41.667 | 0.00 | 0.00 | 0.00 | 5.18 |
1177 | 1376 | 5.105106 | TCCATACCAAAATAAGAGTCGCTGA | 60.105 | 40.000 | 0.00 | 0.00 | 0.00 | 4.26 |
1178 | 1377 | 5.760253 | CCATACCAAAATAAGAGTCGCTGAT | 59.240 | 40.000 | 0.00 | 0.00 | 0.00 | 2.90 |
1179 | 1378 | 6.260936 | CCATACCAAAATAAGAGTCGCTGATT | 59.739 | 38.462 | 0.00 | 0.00 | 0.00 | 2.57 |
1180 | 1379 | 7.201732 | CCATACCAAAATAAGAGTCGCTGATTT | 60.202 | 37.037 | 0.00 | 0.00 | 39.00 | 2.17 |
1181 | 1380 | 8.826710 | CATACCAAAATAAGAGTCGCTGATTTA | 58.173 | 33.333 | 0.00 | 0.00 | 36.78 | 1.40 |
1182 | 1381 | 7.308782 | ACCAAAATAAGAGTCGCTGATTTAG | 57.691 | 36.000 | 0.00 | 0.00 | 36.78 | 1.85 |
1183 | 1382 | 6.879458 | ACCAAAATAAGAGTCGCTGATTTAGT | 59.121 | 34.615 | 0.00 | 0.00 | 36.78 | 2.24 |
1184 | 1383 | 8.038944 | ACCAAAATAAGAGTCGCTGATTTAGTA | 58.961 | 33.333 | 0.00 | 0.00 | 36.78 | 1.82 |
1185 | 1384 | 8.543774 | CCAAAATAAGAGTCGCTGATTTAGTAG | 58.456 | 37.037 | 0.00 | 0.00 | 36.78 | 2.57 |
1186 | 1385 | 9.088512 | CAAAATAAGAGTCGCTGATTTAGTAGT | 57.911 | 33.333 | 0.00 | 0.00 | 36.78 | 2.73 |
1187 | 1386 | 9.654663 | AAAATAAGAGTCGCTGATTTAGTAGTT | 57.345 | 29.630 | 0.00 | 0.00 | 36.78 | 2.24 |
1189 | 1388 | 9.953697 | AATAAGAGTCGCTGATTTAGTAGTTAG | 57.046 | 33.333 | 0.00 | 0.00 | 0.00 | 2.34 |
1190 | 1389 | 7.393841 | AAGAGTCGCTGATTTAGTAGTTAGT | 57.606 | 36.000 | 0.00 | 0.00 | 0.00 | 2.24 |
1191 | 1390 | 8.503458 | AAGAGTCGCTGATTTAGTAGTTAGTA | 57.497 | 34.615 | 0.00 | 0.00 | 0.00 | 1.82 |
1192 | 1391 | 7.918643 | AGAGTCGCTGATTTAGTAGTTAGTAC | 58.081 | 38.462 | 0.00 | 0.00 | 0.00 | 2.73 |
1193 | 1392 | 7.551974 | AGAGTCGCTGATTTAGTAGTTAGTACA | 59.448 | 37.037 | 0.00 | 0.00 | 33.55 | 2.90 |
1194 | 1393 | 8.048534 | AGTCGCTGATTTAGTAGTTAGTACAA | 57.951 | 34.615 | 0.00 | 0.00 | 33.55 | 2.41 |
1195 | 1394 | 8.517878 | AGTCGCTGATTTAGTAGTTAGTACAAA | 58.482 | 33.333 | 0.00 | 0.00 | 33.55 | 2.83 |
1196 | 1395 | 8.796278 | GTCGCTGATTTAGTAGTTAGTACAAAG | 58.204 | 37.037 | 0.00 | 0.00 | 33.55 | 2.77 |
1313 | 1515 | 2.517980 | AGCCCCCAATGGTAATGTGTAT | 59.482 | 45.455 | 0.00 | 0.00 | 0.00 | 2.29 |
1392 | 1594 | 4.605354 | CGTTTGTCGACGCCAATCATATAC | 60.605 | 45.833 | 11.62 | 0.00 | 42.86 | 1.47 |
1401 | 1603 | 5.853936 | ACGCCAATCATATACTAGAAAGCA | 58.146 | 37.500 | 0.00 | 0.00 | 0.00 | 3.91 |
1482 | 1684 | 1.065551 | GTGGTTGTGAGAAAGTGGTGC | 59.934 | 52.381 | 0.00 | 0.00 | 0.00 | 5.01 |
1505 | 1713 | 1.405463 | TGTACTGCTCGCATACAGAGG | 59.595 | 52.381 | 4.06 | 0.00 | 37.35 | 3.69 |
1524 | 1732 | 8.905660 | ACAGAGGAATATCAATGATCAAGAAG | 57.094 | 34.615 | 0.00 | 0.00 | 0.00 | 2.85 |
1546 | 1754 | 4.023707 | AGCAAGCACAAATTCTACAGACAC | 60.024 | 41.667 | 0.00 | 0.00 | 0.00 | 3.67 |
1551 | 1759 | 5.468072 | AGCACAAATTCTACAGACACTTCAG | 59.532 | 40.000 | 0.00 | 0.00 | 0.00 | 3.02 |
1555 | 1763 | 3.386768 | TTCTACAGACACTTCAGCCAC | 57.613 | 47.619 | 0.00 | 0.00 | 0.00 | 5.01 |
1556 | 1764 | 2.316108 | TCTACAGACACTTCAGCCACA | 58.684 | 47.619 | 0.00 | 0.00 | 0.00 | 4.17 |
1747 | 1959 | 9.940166 | ATGGTAAAAAGTGTAAGACGTTTTAAG | 57.060 | 29.630 | 0.00 | 0.00 | 44.70 | 1.85 |
1748 | 1960 | 8.945057 | TGGTAAAAAGTGTAAGACGTTTTAAGT | 58.055 | 29.630 | 0.00 | 0.00 | 44.70 | 2.24 |
1749 | 1961 | 9.425893 | GGTAAAAAGTGTAAGACGTTTTAAGTC | 57.574 | 33.333 | 0.00 | 0.00 | 44.70 | 3.01 |
1750 | 1962 | 9.971744 | GTAAAAAGTGTAAGACGTTTTAAGTCA | 57.028 | 29.630 | 0.00 | 0.00 | 44.70 | 3.41 |
1751 | 1963 | 8.885302 | AAAAAGTGTAAGACGTTTTAAGTCAC | 57.115 | 30.769 | 0.00 | 5.26 | 42.31 | 3.67 |
1752 | 1964 | 7.838771 | AAAGTGTAAGACGTTTTAAGTCACT | 57.161 | 32.000 | 12.19 | 12.19 | 40.84 | 3.41 |
1753 | 1965 | 8.931385 | AAAGTGTAAGACGTTTTAAGTCACTA | 57.069 | 30.769 | 16.11 | 0.00 | 40.84 | 2.74 |
1754 | 1966 | 7.920908 | AGTGTAAGACGTTTTAAGTCACTAC | 57.079 | 36.000 | 14.90 | 0.00 | 40.84 | 2.73 |
1755 | 1967 | 7.710896 | AGTGTAAGACGTTTTAAGTCACTACT | 58.289 | 34.615 | 14.90 | 4.46 | 40.84 | 2.57 |
1757 | 1969 | 8.811378 | GTGTAAGACGTTTTAAGTCACTACTTT | 58.189 | 33.333 | 0.00 | 0.00 | 43.60 | 2.66 |
1775 | 1987 | 8.803201 | ACTACTTTAGTGACCTAACGTTTTAC | 57.197 | 34.615 | 5.91 | 0.00 | 37.04 | 2.01 |
1776 | 1988 | 8.413229 | ACTACTTTAGTGACCTAACGTTTTACA | 58.587 | 33.333 | 5.91 | 0.00 | 37.04 | 2.41 |
1777 | 1989 | 9.415544 | CTACTTTAGTGACCTAACGTTTTACAT | 57.584 | 33.333 | 5.91 | 0.00 | 37.04 | 2.29 |
1778 | 1990 | 8.667076 | ACTTTAGTGACCTAACGTTTTACATT | 57.333 | 30.769 | 5.91 | 2.29 | 33.26 | 2.71 |
1779 | 1991 | 9.112725 | ACTTTAGTGACCTAACGTTTTACATTT | 57.887 | 29.630 | 5.91 | 0.00 | 33.26 | 2.32 |
1780 | 1992 | 9.377383 | CTTTAGTGACCTAACGTTTTACATTTG | 57.623 | 33.333 | 5.91 | 0.00 | 32.91 | 2.32 |
1781 | 1993 | 6.930667 | AGTGACCTAACGTTTTACATTTGT | 57.069 | 33.333 | 5.91 | 0.00 | 0.00 | 2.83 |
1782 | 1994 | 7.324354 | AGTGACCTAACGTTTTACATTTGTT | 57.676 | 32.000 | 5.91 | 0.00 | 0.00 | 2.83 |
1783 | 1995 | 7.764331 | AGTGACCTAACGTTTTACATTTGTTT | 58.236 | 30.769 | 5.91 | 0.00 | 0.00 | 2.83 |
1784 | 1996 | 8.891720 | AGTGACCTAACGTTTTACATTTGTTTA | 58.108 | 29.630 | 5.91 | 0.00 | 0.00 | 2.01 |
1785 | 1997 | 8.946935 | GTGACCTAACGTTTTACATTTGTTTAC | 58.053 | 33.333 | 5.91 | 0.00 | 0.00 | 2.01 |
1786 | 1998 | 8.671921 | TGACCTAACGTTTTACATTTGTTTACA | 58.328 | 29.630 | 5.91 | 0.00 | 0.00 | 2.41 |
1787 | 1999 | 9.161684 | GACCTAACGTTTTACATTTGTTTACAG | 57.838 | 33.333 | 5.91 | 0.00 | 0.00 | 2.74 |
1788 | 2000 | 8.891720 | ACCTAACGTTTTACATTTGTTTACAGA | 58.108 | 29.630 | 5.91 | 0.00 | 0.00 | 3.41 |
1789 | 2001 | 9.377383 | CCTAACGTTTTACATTTGTTTACAGAG | 57.623 | 33.333 | 5.91 | 0.00 | 0.00 | 3.35 |
1790 | 2002 | 9.377383 | CTAACGTTTTACATTTGTTTACAGAGG | 57.623 | 33.333 | 5.91 | 0.00 | 0.00 | 3.69 |
1791 | 2003 | 6.731164 | ACGTTTTACATTTGTTTACAGAGGG | 58.269 | 36.000 | 0.00 | 0.00 | 0.00 | 4.30 |
1792 | 2004 | 6.543100 | ACGTTTTACATTTGTTTACAGAGGGA | 59.457 | 34.615 | 0.00 | 0.00 | 0.00 | 4.20 |
1806 | 2028 | 7.563724 | TTACAGAGGGAGTACCATTTTACTT | 57.436 | 36.000 | 0.00 | 0.00 | 43.89 | 2.24 |
1807 | 2029 | 6.449830 | ACAGAGGGAGTACCATTTTACTTT | 57.550 | 37.500 | 0.00 | 0.00 | 43.89 | 2.66 |
1833 | 2055 | 2.107726 | ACCCACCCTTACTCTTGAAACC | 59.892 | 50.000 | 0.00 | 0.00 | 0.00 | 3.27 |
1877 | 2102 | 2.493278 | TGAGCACGAGTCATCTGAATCA | 59.507 | 45.455 | 8.21 | 0.00 | 38.92 | 2.57 |
1886 | 2782 | 7.538334 | CACGAGTCATCTGAATCAGAAGATATC | 59.462 | 40.741 | 19.24 | 17.75 | 44.04 | 1.63 |
1922 | 3070 | 2.042464 | ACACCCGAGCATGATGATACT | 58.958 | 47.619 | 0.00 | 0.00 | 0.00 | 2.12 |
2041 | 3189 | 2.094182 | ACGTCGCAGTTATGACCAAGAT | 60.094 | 45.455 | 0.00 | 0.00 | 0.00 | 2.40 |
2054 | 3202 | 2.416547 | GACCAAGATCAATGTCCGTGTG | 59.583 | 50.000 | 0.00 | 0.00 | 0.00 | 3.82 |
2162 | 3352 | 3.709587 | ACTATGCTACTACCGCCCATAT | 58.290 | 45.455 | 0.00 | 0.00 | 0.00 | 1.78 |
2184 | 3396 | 1.133407 | TGTTTCGCCACAGTTGTTTCC | 59.867 | 47.619 | 0.00 | 0.00 | 0.00 | 3.13 |
2202 | 3514 | 3.342377 | TCCGCAACAGTCCATAATTGA | 57.658 | 42.857 | 0.00 | 0.00 | 0.00 | 2.57 |
2244 | 3568 | 5.973651 | ATATGTTGAGTATTCTGCGTGTG | 57.026 | 39.130 | 0.00 | 0.00 | 0.00 | 3.82 |
2314 | 3638 | 2.295602 | GGGGAGCCGGAGTTTGGTA | 61.296 | 63.158 | 5.05 | 0.00 | 0.00 | 3.25 |
2334 | 3658 | 1.444933 | TTTCAGGCAGAGGGGAAGAA | 58.555 | 50.000 | 0.00 | 0.00 | 0.00 | 2.52 |
2409 | 3733 | 1.039856 | GGCTGGACTTCTTTTGCCAA | 58.960 | 50.000 | 0.00 | 0.00 | 40.04 | 4.52 |
2425 | 3749 | 1.021202 | CCAAAGACAACAACCTGCGA | 58.979 | 50.000 | 0.00 | 0.00 | 0.00 | 5.10 |
2567 | 4088 | 2.703007 | AGAGAGGTTCTGCTCTTTGTGT | 59.297 | 45.455 | 0.00 | 0.00 | 38.26 | 3.72 |
2576 | 4097 | 3.054878 | CTGCTCTTTGTGTTGCCATTTC | 58.945 | 45.455 | 0.00 | 0.00 | 0.00 | 2.17 |
2587 | 4108 | 3.753797 | TGTTGCCATTTCGTATGTTGCTA | 59.246 | 39.130 | 0.00 | 0.00 | 0.00 | 3.49 |
2618 | 4145 | 3.572584 | CTCTTTGCTGCTTTTGTGATCC | 58.427 | 45.455 | 0.00 | 0.00 | 0.00 | 3.36 |
2745 | 4302 | 5.177511 | GCCTTATTTTGTGGCAAGAAGTTTC | 59.822 | 40.000 | 0.00 | 0.00 | 45.46 | 2.78 |
2826 | 4387 | 4.584029 | AGTTTAATGAACTCGTGATGCG | 57.416 | 40.909 | 0.00 | 0.00 | 45.40 | 4.73 |
2841 | 4402 | 4.258899 | CGTGATGCGTAGTTTCTTAGTTCG | 60.259 | 45.833 | 0.00 | 0.00 | 35.54 | 3.95 |
2865 | 4427 | 3.522759 | TGTGTACTTCCCTGGGTTGATA | 58.477 | 45.455 | 13.56 | 0.00 | 0.00 | 2.15 |
2945 | 4512 | 3.679980 | CCAGGAATTAGTGAGACAACGTG | 59.320 | 47.826 | 0.00 | 0.00 | 0.00 | 4.49 |
2953 | 4526 | 1.261619 | GTGAGACAACGTGCAAGAAGG | 59.738 | 52.381 | 6.65 | 0.00 | 0.00 | 3.46 |
2955 | 4528 | 1.527311 | GAGACAACGTGCAAGAAGGAC | 59.473 | 52.381 | 6.65 | 0.00 | 34.85 | 3.85 |
3056 | 4636 | 8.532186 | TGGCCTAAACATATACAACATCAAAT | 57.468 | 30.769 | 3.32 | 0.00 | 0.00 | 2.32 |
3058 | 4638 | 7.803189 | GGCCTAAACATATACAACATCAAATCG | 59.197 | 37.037 | 0.00 | 0.00 | 0.00 | 3.34 |
3060 | 4640 | 7.803189 | CCTAAACATATACAACATCAAATCGGC | 59.197 | 37.037 | 0.00 | 0.00 | 0.00 | 5.54 |
3067 | 4649 | 3.127548 | ACAACATCAAATCGGCATGAGAC | 59.872 | 43.478 | 0.00 | 0.00 | 0.00 | 3.36 |
3072 | 4654 | 2.499693 | TCAAATCGGCATGAGACCTGTA | 59.500 | 45.455 | 0.00 | 0.00 | 0.00 | 2.74 |
3073 | 4655 | 3.055458 | TCAAATCGGCATGAGACCTGTAA | 60.055 | 43.478 | 0.00 | 0.00 | 0.00 | 2.41 |
3079 | 4661 | 3.555956 | CGGCATGAGACCTGTAACATAAC | 59.444 | 47.826 | 0.00 | 0.00 | 0.00 | 1.89 |
3093 | 4675 | 8.268850 | CTGTAACATAACAGGCTTATGAAACT | 57.731 | 34.615 | 12.08 | 0.00 | 42.63 | 2.66 |
3166 | 4758 | 8.540388 | TCAACTATATTAGGATAAGGCACCATC | 58.460 | 37.037 | 0.00 | 0.00 | 0.00 | 3.51 |
3174 | 4766 | 4.891756 | AGGATAAGGCACCATCATTTTGAG | 59.108 | 41.667 | 0.00 | 0.00 | 0.00 | 3.02 |
3223 | 4818 | 2.086610 | AAACAATTGGGCTGTCTGGT | 57.913 | 45.000 | 10.83 | 0.00 | 0.00 | 4.00 |
3230 | 4826 | 1.859302 | TGGGCTGTCTGGTTTTTGTT | 58.141 | 45.000 | 0.00 | 0.00 | 0.00 | 2.83 |
3247 | 4843 | 7.430211 | GGTTTTTGTTACGTAGAAACCTTTCAG | 59.570 | 37.037 | 23.36 | 0.00 | 43.57 | 3.02 |
3248 | 4844 | 6.607735 | TTTGTTACGTAGAAACCTTTCAGG | 57.392 | 37.500 | 0.00 | 0.00 | 42.49 | 3.86 |
3467 | 5067 | 4.527509 | TCTCATGGTCTTCACTTCTCAC | 57.472 | 45.455 | 0.00 | 0.00 | 0.00 | 3.51 |
3471 | 5071 | 5.684704 | TCATGGTCTTCACTTCTCACTTTT | 58.315 | 37.500 | 0.00 | 0.00 | 0.00 | 2.27 |
3517 | 5118 | 1.329292 | TGGTTCGTTTGTTTCTCGCAG | 59.671 | 47.619 | 0.00 | 0.00 | 0.00 | 5.18 |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
38 | 39 | 8.907885 | AGATTCTTAGAGCAAAGACAACTTTTT | 58.092 | 29.630 | 0.00 | 0.00 | 43.41 | 1.94 |
41 | 42 | 7.220030 | TCAGATTCTTAGAGCAAAGACAACTT | 58.780 | 34.615 | 0.00 | 0.00 | 35.25 | 2.66 |
62 | 63 | 8.981659 | TCAGATCCATATAAGACTTGTTTCAGA | 58.018 | 33.333 | 0.00 | 0.00 | 0.00 | 3.27 |
96 | 97 | 6.113411 | CGAGTAGGGTGTTGGATTTATCTTT | 58.887 | 40.000 | 0.00 | 0.00 | 0.00 | 2.52 |
97 | 98 | 5.671493 | CGAGTAGGGTGTTGGATTTATCTT | 58.329 | 41.667 | 0.00 | 0.00 | 0.00 | 2.40 |
98 | 99 | 4.443034 | GCGAGTAGGGTGTTGGATTTATCT | 60.443 | 45.833 | 0.00 | 0.00 | 0.00 | 1.98 |
99 | 100 | 3.808174 | GCGAGTAGGGTGTTGGATTTATC | 59.192 | 47.826 | 0.00 | 0.00 | 0.00 | 1.75 |
101 | 102 | 2.568062 | TGCGAGTAGGGTGTTGGATTTA | 59.432 | 45.455 | 0.00 | 0.00 | 0.00 | 1.40 |
139 | 144 | 3.883830 | TTGCAAAAGAGAAACTTGGCA | 57.116 | 38.095 | 0.00 | 0.00 | 43.15 | 4.92 |
145 | 150 | 7.015289 | GGACAAAAAGTTTGCAAAAGAGAAAC | 58.985 | 34.615 | 14.67 | 0.00 | 0.00 | 2.78 |
151 | 156 | 6.306397 | GTCTTGGACAAAAAGTTTGCAAAAG | 58.694 | 36.000 | 14.67 | 3.11 | 32.09 | 2.27 |
184 | 206 | 3.553922 | GCCTGCCACTGTATCATAGACTC | 60.554 | 52.174 | 0.00 | 0.00 | 0.00 | 3.36 |
205 | 227 | 2.201708 | GGGACTCTACGGCCCTAGC | 61.202 | 68.421 | 0.00 | 0.00 | 38.85 | 3.42 |
230 | 271 | 4.322574 | CCTCTCATTCTTTGTCTCTGCTGA | 60.323 | 45.833 | 0.00 | 0.00 | 0.00 | 4.26 |
272 | 314 | 2.126228 | CGCCGAACTGAACGCCTA | 60.126 | 61.111 | 0.00 | 0.00 | 0.00 | 3.93 |
292 | 334 | 1.507141 | AAGAAGCAAGCGGAACCACG | 61.507 | 55.000 | 0.00 | 0.00 | 0.00 | 4.94 |
293 | 335 | 0.238553 | GAAGAAGCAAGCGGAACCAC | 59.761 | 55.000 | 0.00 | 0.00 | 0.00 | 4.16 |
297 | 339 | 1.670087 | CGAGAGAAGAAGCAAGCGGAA | 60.670 | 52.381 | 0.00 | 0.00 | 0.00 | 4.30 |
301 | 343 | 0.998669 | GAGCGAGAGAAGAAGCAAGC | 59.001 | 55.000 | 0.00 | 0.00 | 0.00 | 4.01 |
396 | 440 | 2.123248 | TGCAATGCAGACCGGAAGGA | 62.123 | 55.000 | 9.46 | 0.00 | 44.28 | 3.36 |
439 | 509 | 7.533426 | CACATGTAGGGATGAAAGAAAAGAAG | 58.467 | 38.462 | 0.00 | 0.00 | 0.00 | 2.85 |
442 | 512 | 5.183713 | TGCACATGTAGGGATGAAAGAAAAG | 59.816 | 40.000 | 0.00 | 0.00 | 0.00 | 2.27 |
444 | 514 | 4.661222 | TGCACATGTAGGGATGAAAGAAA | 58.339 | 39.130 | 0.00 | 0.00 | 0.00 | 2.52 |
446 | 516 | 3.998913 | TGCACATGTAGGGATGAAAGA | 57.001 | 42.857 | 0.00 | 0.00 | 0.00 | 2.52 |
452 | 522 | 4.080129 | AGTTCTCAATGCACATGTAGGGAT | 60.080 | 41.667 | 0.00 | 0.00 | 0.00 | 3.85 |
454 | 524 | 3.614092 | AGTTCTCAATGCACATGTAGGG | 58.386 | 45.455 | 0.00 | 0.00 | 0.00 | 3.53 |
456 | 526 | 5.634896 | GGAAAGTTCTCAATGCACATGTAG | 58.365 | 41.667 | 0.00 | 0.00 | 0.00 | 2.74 |
457 | 527 | 4.154015 | CGGAAAGTTCTCAATGCACATGTA | 59.846 | 41.667 | 0.00 | 0.00 | 0.00 | 2.29 |
458 | 528 | 3.058016 | CGGAAAGTTCTCAATGCACATGT | 60.058 | 43.478 | 0.00 | 0.00 | 0.00 | 3.21 |
459 | 529 | 3.189080 | TCGGAAAGTTCTCAATGCACATG | 59.811 | 43.478 | 0.00 | 0.00 | 0.00 | 3.21 |
460 | 530 | 3.189287 | GTCGGAAAGTTCTCAATGCACAT | 59.811 | 43.478 | 0.00 | 0.00 | 0.00 | 3.21 |
461 | 531 | 2.548057 | GTCGGAAAGTTCTCAATGCACA | 59.452 | 45.455 | 0.00 | 0.00 | 0.00 | 4.57 |
462 | 532 | 2.411547 | CGTCGGAAAGTTCTCAATGCAC | 60.412 | 50.000 | 0.00 | 0.00 | 0.00 | 4.57 |
463 | 533 | 1.798223 | CGTCGGAAAGTTCTCAATGCA | 59.202 | 47.619 | 0.00 | 0.00 | 0.00 | 3.96 |
464 | 534 | 1.128692 | CCGTCGGAAAGTTCTCAATGC | 59.871 | 52.381 | 4.91 | 0.00 | 0.00 | 3.56 |
465 | 535 | 1.732259 | CCCGTCGGAAAGTTCTCAATG | 59.268 | 52.381 | 14.39 | 0.00 | 0.00 | 2.82 |
466 | 536 | 1.346722 | ACCCGTCGGAAAGTTCTCAAT | 59.653 | 47.619 | 14.39 | 0.00 | 0.00 | 2.57 |
467 | 537 | 0.754472 | ACCCGTCGGAAAGTTCTCAA | 59.246 | 50.000 | 14.39 | 0.00 | 0.00 | 3.02 |
468 | 538 | 1.270550 | GTACCCGTCGGAAAGTTCTCA | 59.729 | 52.381 | 14.39 | 0.00 | 0.00 | 3.27 |
469 | 539 | 1.403382 | GGTACCCGTCGGAAAGTTCTC | 60.403 | 57.143 | 14.39 | 0.00 | 0.00 | 2.87 |
470 | 540 | 0.605083 | GGTACCCGTCGGAAAGTTCT | 59.395 | 55.000 | 14.39 | 0.00 | 0.00 | 3.01 |
471 | 541 | 0.318120 | TGGTACCCGTCGGAAAGTTC | 59.682 | 55.000 | 14.39 | 0.00 | 0.00 | 3.01 |
472 | 542 | 0.319405 | CTGGTACCCGTCGGAAAGTT | 59.681 | 55.000 | 14.39 | 0.00 | 0.00 | 2.66 |
473 | 543 | 0.540365 | TCTGGTACCCGTCGGAAAGT | 60.540 | 55.000 | 14.39 | 4.74 | 0.00 | 2.66 |
474 | 544 | 0.822164 | ATCTGGTACCCGTCGGAAAG | 59.178 | 55.000 | 14.39 | 0.00 | 0.00 | 2.62 |
475 | 545 | 2.026641 | CTATCTGGTACCCGTCGGAAA | 58.973 | 52.381 | 14.39 | 0.00 | 0.00 | 3.13 |
476 | 546 | 1.683943 | CTATCTGGTACCCGTCGGAA | 58.316 | 55.000 | 14.39 | 0.00 | 0.00 | 4.30 |
477 | 547 | 0.179009 | CCTATCTGGTACCCGTCGGA | 60.179 | 60.000 | 14.39 | 0.40 | 0.00 | 4.55 |
478 | 548 | 1.803366 | GCCTATCTGGTACCCGTCGG | 61.803 | 65.000 | 10.07 | 3.60 | 38.35 | 4.79 |
479 | 549 | 1.658673 | GCCTATCTGGTACCCGTCG | 59.341 | 63.158 | 10.07 | 0.00 | 38.35 | 5.12 |
480 | 550 | 1.803366 | CGGCCTATCTGGTACCCGTC | 61.803 | 65.000 | 10.07 | 0.00 | 35.26 | 4.79 |
481 | 551 | 1.831286 | CGGCCTATCTGGTACCCGT | 60.831 | 63.158 | 10.07 | 0.00 | 35.26 | 5.28 |
482 | 552 | 1.524863 | CTCGGCCTATCTGGTACCCG | 61.525 | 65.000 | 10.07 | 2.49 | 39.38 | 5.28 |
483 | 553 | 1.817911 | GCTCGGCCTATCTGGTACCC | 61.818 | 65.000 | 10.07 | 0.00 | 38.35 | 3.69 |
484 | 554 | 0.828343 | AGCTCGGCCTATCTGGTACC | 60.828 | 60.000 | 4.43 | 4.43 | 38.35 | 3.34 |
485 | 555 | 1.813786 | CTAGCTCGGCCTATCTGGTAC | 59.186 | 57.143 | 0.00 | 0.00 | 38.35 | 3.34 |
486 | 556 | 1.271982 | CCTAGCTCGGCCTATCTGGTA | 60.272 | 57.143 | 0.00 | 0.00 | 38.35 | 3.25 |
487 | 557 | 0.540830 | CCTAGCTCGGCCTATCTGGT | 60.541 | 60.000 | 0.00 | 0.00 | 38.35 | 4.00 |
488 | 558 | 0.251386 | TCCTAGCTCGGCCTATCTGG | 60.251 | 60.000 | 0.00 | 0.00 | 39.35 | 3.86 |
489 | 559 | 1.543802 | CTTCCTAGCTCGGCCTATCTG | 59.456 | 57.143 | 0.00 | 0.00 | 0.00 | 2.90 |
490 | 560 | 1.549037 | CCTTCCTAGCTCGGCCTATCT | 60.549 | 57.143 | 0.00 | 0.00 | 0.00 | 1.98 |
491 | 561 | 0.892063 | CCTTCCTAGCTCGGCCTATC | 59.108 | 60.000 | 0.00 | 0.00 | 0.00 | 2.08 |
492 | 562 | 0.483328 | TCCTTCCTAGCTCGGCCTAT | 59.517 | 55.000 | 0.00 | 0.00 | 0.00 | 2.57 |
493 | 563 | 0.260816 | TTCCTTCCTAGCTCGGCCTA | 59.739 | 55.000 | 0.00 | 0.00 | 0.00 | 3.93 |
494 | 564 | 1.001760 | TTCCTTCCTAGCTCGGCCT | 59.998 | 57.895 | 0.00 | 0.00 | 0.00 | 5.19 |
495 | 565 | 1.144276 | GTTCCTTCCTAGCTCGGCC | 59.856 | 63.158 | 0.00 | 0.00 | 0.00 | 6.13 |
496 | 566 | 0.537653 | AAGTTCCTTCCTAGCTCGGC | 59.462 | 55.000 | 0.00 | 0.00 | 0.00 | 5.54 |
497 | 567 | 2.233922 | TGAAAGTTCCTTCCTAGCTCGG | 59.766 | 50.000 | 0.00 | 0.00 | 0.00 | 4.63 |
498 | 568 | 3.193691 | TCTGAAAGTTCCTTCCTAGCTCG | 59.806 | 47.826 | 0.00 | 0.00 | 33.76 | 5.03 |
499 | 569 | 4.810191 | TCTGAAAGTTCCTTCCTAGCTC | 57.190 | 45.455 | 0.00 | 0.00 | 33.76 | 4.09 |
500 | 570 | 4.534103 | ACATCTGAAAGTTCCTTCCTAGCT | 59.466 | 41.667 | 0.00 | 0.00 | 33.76 | 3.32 |
501 | 571 | 4.633565 | CACATCTGAAAGTTCCTTCCTAGC | 59.366 | 45.833 | 0.00 | 0.00 | 33.76 | 3.42 |
502 | 572 | 4.633565 | GCACATCTGAAAGTTCCTTCCTAG | 59.366 | 45.833 | 0.00 | 0.00 | 33.76 | 3.02 |
503 | 573 | 4.041567 | TGCACATCTGAAAGTTCCTTCCTA | 59.958 | 41.667 | 0.00 | 0.00 | 33.76 | 2.94 |
504 | 574 | 3.181440 | TGCACATCTGAAAGTTCCTTCCT | 60.181 | 43.478 | 0.00 | 0.00 | 33.76 | 3.36 |
505 | 575 | 3.149196 | TGCACATCTGAAAGTTCCTTCC | 58.851 | 45.455 | 0.00 | 0.00 | 33.76 | 3.46 |
506 | 576 | 5.382618 | AATGCACATCTGAAAGTTCCTTC | 57.617 | 39.130 | 0.00 | 0.00 | 33.76 | 3.46 |
507 | 577 | 5.796424 | AAATGCACATCTGAAAGTTCCTT | 57.204 | 34.783 | 0.00 | 0.00 | 33.76 | 3.36 |
508 | 578 | 5.535333 | CAAAATGCACATCTGAAAGTTCCT | 58.465 | 37.500 | 0.00 | 0.00 | 33.76 | 3.36 |
509 | 579 | 4.151157 | GCAAAATGCACATCTGAAAGTTCC | 59.849 | 41.667 | 0.00 | 0.00 | 44.26 | 3.62 |
510 | 580 | 5.260027 | GCAAAATGCACATCTGAAAGTTC | 57.740 | 39.130 | 0.00 | 0.00 | 44.26 | 3.01 |
540 | 610 | 3.960102 | AGCCCAACAAAAGTGATGAAAGA | 59.040 | 39.130 | 0.00 | 0.00 | 29.21 | 2.52 |
547 | 617 | 1.032014 | GCTGAGCCCAACAAAAGTGA | 58.968 | 50.000 | 0.00 | 0.00 | 0.00 | 3.41 |
549 | 619 | 1.410153 | CTTGCTGAGCCCAACAAAAGT | 59.590 | 47.619 | 0.23 | 0.00 | 29.11 | 2.66 |
622 | 693 | 7.883311 | TCCCAAAAGAAAGAAACCTGTATAGAG | 59.117 | 37.037 | 0.00 | 0.00 | 0.00 | 2.43 |
623 | 694 | 7.751646 | TCCCAAAAGAAAGAAACCTGTATAGA | 58.248 | 34.615 | 0.00 | 0.00 | 0.00 | 1.98 |
643 | 714 | 4.080356 | CCATCAAGTTACCTGATCTCCCAA | 60.080 | 45.833 | 0.00 | 0.00 | 0.00 | 4.12 |
645 | 716 | 3.181450 | CCCATCAAGTTACCTGATCTCCC | 60.181 | 52.174 | 0.00 | 0.00 | 0.00 | 4.30 |
734 | 808 | 4.809496 | AAGCATGCAGAGGCCGGG | 62.809 | 66.667 | 21.98 | 0.00 | 40.13 | 5.73 |
735 | 809 | 3.515286 | CAAGCATGCAGAGGCCGG | 61.515 | 66.667 | 21.98 | 0.00 | 40.13 | 6.13 |
753 | 827 | 4.174009 | CAGCCAGAGATGAAGCAAAATTG | 58.826 | 43.478 | 0.00 | 0.00 | 0.00 | 2.32 |
754 | 828 | 3.194968 | CCAGCCAGAGATGAAGCAAAATT | 59.805 | 43.478 | 0.00 | 0.00 | 0.00 | 1.82 |
755 | 829 | 2.758979 | CCAGCCAGAGATGAAGCAAAAT | 59.241 | 45.455 | 0.00 | 0.00 | 0.00 | 1.82 |
756 | 830 | 2.165167 | CCAGCCAGAGATGAAGCAAAA | 58.835 | 47.619 | 0.00 | 0.00 | 0.00 | 2.44 |
757 | 831 | 1.074405 | ACCAGCCAGAGATGAAGCAAA | 59.926 | 47.619 | 0.00 | 0.00 | 0.00 | 3.68 |
758 | 832 | 0.694771 | ACCAGCCAGAGATGAAGCAA | 59.305 | 50.000 | 0.00 | 0.00 | 0.00 | 3.91 |
764 | 838 | 0.460987 | GGAACGACCAGCCAGAGATG | 60.461 | 60.000 | 0.00 | 0.00 | 38.79 | 2.90 |
792 | 957 | 6.126409 | ACAAAGTACAGGGAGTTTGATTTGA | 58.874 | 36.000 | 16.67 | 0.00 | 40.67 | 2.69 |
793 | 958 | 6.391227 | ACAAAGTACAGGGAGTTTGATTTG | 57.609 | 37.500 | 16.67 | 3.08 | 40.67 | 2.32 |
794 | 959 | 7.342026 | AGAAACAAAGTACAGGGAGTTTGATTT | 59.658 | 33.333 | 16.67 | 12.71 | 40.67 | 2.17 |
795 | 960 | 6.833933 | AGAAACAAAGTACAGGGAGTTTGATT | 59.166 | 34.615 | 16.67 | 11.72 | 40.67 | 2.57 |
796 | 961 | 6.365520 | AGAAACAAAGTACAGGGAGTTTGAT | 58.634 | 36.000 | 16.67 | 4.12 | 40.67 | 2.57 |
797 | 962 | 5.751586 | AGAAACAAAGTACAGGGAGTTTGA | 58.248 | 37.500 | 16.67 | 0.00 | 40.67 | 2.69 |
834 | 999 | 7.819900 | GGAGGACTGCTTGTGGTATATTATAAG | 59.180 | 40.741 | 0.00 | 0.00 | 0.00 | 1.73 |
883 | 1056 | 8.339714 | TGTTTTACACTGCAACTACTCATAAAC | 58.660 | 33.333 | 0.00 | 0.00 | 0.00 | 2.01 |
886 | 1059 | 8.439993 | TTTGTTTTACACTGCAACTACTCATA | 57.560 | 30.769 | 0.00 | 0.00 | 0.00 | 2.15 |
918 | 1091 | 6.039829 | GTGAAAGGAAATCTTGTTGTCCTCTT | 59.960 | 38.462 | 0.00 | 0.00 | 39.65 | 2.85 |
936 | 1109 | 0.609957 | TGGCTGATGGCAGTGAAAGG | 60.610 | 55.000 | 0.00 | 0.00 | 44.10 | 3.11 |
949 | 1122 | 5.066893 | GCAGAAAAACATAGATCATGGCTGA | 59.933 | 40.000 | 0.00 | 0.00 | 39.13 | 4.26 |
953 | 1138 | 7.988737 | TGTAAGCAGAAAAACATAGATCATGG | 58.011 | 34.615 | 0.00 | 0.00 | 39.13 | 3.66 |
981 | 1172 | 0.666913 | TCTCGCCGCCTACTAATGTC | 59.333 | 55.000 | 0.00 | 0.00 | 0.00 | 3.06 |
1008 | 1199 | 2.038164 | TCTCTTGCAGCACTCACAAGAT | 59.962 | 45.455 | 11.22 | 0.00 | 46.28 | 2.40 |
1011 | 1202 | 2.556144 | ATCTCTTGCAGCACTCACAA | 57.444 | 45.000 | 0.00 | 0.00 | 0.00 | 3.33 |
1045 | 1236 | 5.221048 | CGAAGAAACACTTGACCTTTCCATT | 60.221 | 40.000 | 0.00 | 0.00 | 39.13 | 3.16 |
1108 | 1299 | 0.251297 | TGATCAAGGCAACCCACTGG | 60.251 | 55.000 | 0.00 | 0.00 | 37.80 | 4.00 |
1146 | 1345 | 6.906901 | ACTCTTATTTTGGTATGGAGGGAGTA | 59.093 | 38.462 | 0.00 | 0.00 | 0.00 | 2.59 |
1149 | 1348 | 5.163343 | CGACTCTTATTTTGGTATGGAGGGA | 60.163 | 44.000 | 0.00 | 0.00 | 0.00 | 4.20 |
1150 | 1349 | 5.057149 | CGACTCTTATTTTGGTATGGAGGG | 58.943 | 45.833 | 0.00 | 0.00 | 0.00 | 4.30 |
1151 | 1350 | 4.511826 | GCGACTCTTATTTTGGTATGGAGG | 59.488 | 45.833 | 0.00 | 0.00 | 0.00 | 4.30 |
1152 | 1351 | 5.235186 | CAGCGACTCTTATTTTGGTATGGAG | 59.765 | 44.000 | 0.00 | 0.00 | 0.00 | 3.86 |
1155 | 1354 | 6.851222 | ATCAGCGACTCTTATTTTGGTATG | 57.149 | 37.500 | 0.00 | 0.00 | 0.00 | 2.39 |
1164 | 1363 | 9.122779 | ACTAACTACTAAATCAGCGACTCTTAT | 57.877 | 33.333 | 0.00 | 0.00 | 0.00 | 1.73 |
1168 | 1367 | 7.692088 | TGTACTAACTACTAAATCAGCGACTC | 58.308 | 38.462 | 0.00 | 0.00 | 0.00 | 3.36 |
1169 | 1368 | 7.621428 | TGTACTAACTACTAAATCAGCGACT | 57.379 | 36.000 | 0.00 | 0.00 | 0.00 | 4.18 |
1170 | 1369 | 8.679288 | TTTGTACTAACTACTAAATCAGCGAC | 57.321 | 34.615 | 0.00 | 0.00 | 0.00 | 5.19 |
1172 | 1371 | 8.684973 | ACTTTGTACTAACTACTAAATCAGCG | 57.315 | 34.615 | 0.00 | 0.00 | 0.00 | 5.18 |
1208 | 1407 | 5.460646 | ACCTGCAAAATTGTGAATCGTTAG | 58.539 | 37.500 | 0.00 | 0.00 | 0.00 | 2.34 |
1221 | 1423 | 4.521146 | CTCTCTGGTATGACCTGCAAAAT | 58.479 | 43.478 | 0.00 | 0.00 | 39.58 | 1.82 |
1313 | 1515 | 2.165641 | ACGCTCAGTAATTCCGACATCA | 59.834 | 45.455 | 0.00 | 0.00 | 0.00 | 3.07 |
1392 | 1594 | 5.389935 | GGAACATCAACGAGTTGCTTTCTAG | 60.390 | 44.000 | 10.83 | 0.00 | 40.24 | 2.43 |
1401 | 1603 | 3.518590 | GGTATCGGAACATCAACGAGTT | 58.481 | 45.455 | 0.00 | 0.00 | 40.21 | 3.01 |
1482 | 1684 | 2.130395 | CTGTATGCGAGCAGTACATGG | 58.870 | 52.381 | 15.31 | 6.65 | 0.00 | 3.66 |
1505 | 1713 | 7.378995 | GTGCTTGCTTCTTGATCATTGATATTC | 59.621 | 37.037 | 0.00 | 0.00 | 0.00 | 1.75 |
1524 | 1732 | 4.023707 | AGTGTCTGTAGAATTTGTGCTTGC | 60.024 | 41.667 | 0.00 | 0.00 | 0.00 | 4.01 |
1546 | 1754 | 2.422479 | CCATCACTGAATGTGGCTGAAG | 59.578 | 50.000 | 0.00 | 0.00 | 46.20 | 3.02 |
1551 | 1759 | 1.026182 | TCGCCATCACTGAATGTGGC | 61.026 | 55.000 | 10.92 | 10.92 | 46.20 | 5.01 |
1555 | 1763 | 3.721035 | TGAGTATCGCCATCACTGAATG | 58.279 | 45.455 | 0.00 | 0.00 | 38.61 | 2.67 |
1556 | 1764 | 4.613925 | ATGAGTATCGCCATCACTGAAT | 57.386 | 40.909 | 0.00 | 0.00 | 38.61 | 2.57 |
1728 | 1940 | 7.838771 | AGTGACTTAAAACGTCTTACACTTT | 57.161 | 32.000 | 0.00 | 0.00 | 33.29 | 2.66 |
1729 | 1941 | 8.193438 | AGTAGTGACTTAAAACGTCTTACACTT | 58.807 | 33.333 | 8.22 | 0.00 | 37.31 | 3.16 |
1730 | 1942 | 7.710896 | AGTAGTGACTTAAAACGTCTTACACT | 58.289 | 34.615 | 8.06 | 8.06 | 39.03 | 3.55 |
1731 | 1943 | 7.920908 | AGTAGTGACTTAAAACGTCTTACAC | 57.079 | 36.000 | 0.00 | 0.00 | 28.61 | 2.90 |
1732 | 1944 | 8.931385 | AAAGTAGTGACTTAAAACGTCTTACA | 57.069 | 30.769 | 0.00 | 0.00 | 45.50 | 2.41 |
1750 | 1962 | 8.413229 | TGTAAAACGTTAGGTCACTAAAGTAGT | 58.587 | 33.333 | 0.00 | 2.08 | 46.46 | 2.73 |
1751 | 1963 | 8.801715 | TGTAAAACGTTAGGTCACTAAAGTAG | 57.198 | 34.615 | 0.00 | 0.00 | 46.46 | 2.57 |
1752 | 1964 | 9.762933 | AATGTAAAACGTTAGGTCACTAAAGTA | 57.237 | 29.630 | 0.00 | 0.00 | 46.46 | 2.24 |
1754 | 1966 | 9.377383 | CAAATGTAAAACGTTAGGTCACTAAAG | 57.623 | 33.333 | 0.00 | 0.00 | 40.66 | 1.85 |
1755 | 1967 | 8.891720 | ACAAATGTAAAACGTTAGGTCACTAAA | 58.108 | 29.630 | 0.00 | 0.00 | 40.66 | 1.85 |
1756 | 1968 | 8.436046 | ACAAATGTAAAACGTTAGGTCACTAA | 57.564 | 30.769 | 0.00 | 0.00 | 36.86 | 2.24 |
1757 | 1969 | 8.436046 | AACAAATGTAAAACGTTAGGTCACTA | 57.564 | 30.769 | 0.00 | 0.00 | 0.00 | 2.74 |
1758 | 1970 | 6.930667 | ACAAATGTAAAACGTTAGGTCACT | 57.069 | 33.333 | 0.00 | 0.00 | 0.00 | 3.41 |
1759 | 1971 | 7.974243 | AAACAAATGTAAAACGTTAGGTCAC | 57.026 | 32.000 | 0.00 | 0.00 | 0.00 | 3.67 |
1760 | 1972 | 8.671921 | TGTAAACAAATGTAAAACGTTAGGTCA | 58.328 | 29.630 | 0.00 | 0.00 | 0.00 | 4.02 |
1761 | 1973 | 9.161684 | CTGTAAACAAATGTAAAACGTTAGGTC | 57.838 | 33.333 | 0.00 | 0.00 | 0.00 | 3.85 |
1762 | 1974 | 8.891720 | TCTGTAAACAAATGTAAAACGTTAGGT | 58.108 | 29.630 | 0.00 | 0.00 | 0.00 | 3.08 |
1763 | 1975 | 9.377383 | CTCTGTAAACAAATGTAAAACGTTAGG | 57.623 | 33.333 | 0.00 | 0.00 | 0.00 | 2.69 |
1764 | 1976 | 9.377383 | CCTCTGTAAACAAATGTAAAACGTTAG | 57.623 | 33.333 | 0.00 | 0.00 | 0.00 | 2.34 |
1765 | 1977 | 8.344098 | CCCTCTGTAAACAAATGTAAAACGTTA | 58.656 | 33.333 | 0.00 | 0.00 | 0.00 | 3.18 |
1766 | 1978 | 7.067251 | TCCCTCTGTAAACAAATGTAAAACGTT | 59.933 | 33.333 | 0.00 | 0.00 | 0.00 | 3.99 |
1767 | 1979 | 6.543100 | TCCCTCTGTAAACAAATGTAAAACGT | 59.457 | 34.615 | 0.00 | 0.00 | 0.00 | 3.99 |
1768 | 1980 | 6.961576 | TCCCTCTGTAAACAAATGTAAAACG | 58.038 | 36.000 | 0.00 | 0.00 | 0.00 | 3.60 |
1769 | 1981 | 7.937649 | ACTCCCTCTGTAAACAAATGTAAAAC | 58.062 | 34.615 | 0.00 | 0.00 | 0.00 | 2.43 |
1770 | 1982 | 9.059260 | GTACTCCCTCTGTAAACAAATGTAAAA | 57.941 | 33.333 | 0.00 | 0.00 | 0.00 | 1.52 |
1771 | 1983 | 7.662669 | GGTACTCCCTCTGTAAACAAATGTAAA | 59.337 | 37.037 | 0.00 | 0.00 | 0.00 | 2.01 |
1772 | 1984 | 7.163441 | GGTACTCCCTCTGTAAACAAATGTAA | 58.837 | 38.462 | 0.00 | 0.00 | 0.00 | 2.41 |
1773 | 1985 | 6.270463 | TGGTACTCCCTCTGTAAACAAATGTA | 59.730 | 38.462 | 0.00 | 0.00 | 0.00 | 2.29 |
1774 | 1986 | 5.072600 | TGGTACTCCCTCTGTAAACAAATGT | 59.927 | 40.000 | 0.00 | 0.00 | 0.00 | 2.71 |
1775 | 1987 | 5.556915 | TGGTACTCCCTCTGTAAACAAATG | 58.443 | 41.667 | 0.00 | 0.00 | 0.00 | 2.32 |
1776 | 1988 | 5.836024 | TGGTACTCCCTCTGTAAACAAAT | 57.164 | 39.130 | 0.00 | 0.00 | 0.00 | 2.32 |
1777 | 1989 | 5.836024 | ATGGTACTCCCTCTGTAAACAAA | 57.164 | 39.130 | 0.00 | 0.00 | 0.00 | 2.83 |
1778 | 1990 | 5.836024 | AATGGTACTCCCTCTGTAAACAA | 57.164 | 39.130 | 0.00 | 0.00 | 0.00 | 2.83 |
1779 | 1991 | 5.836024 | AAATGGTACTCCCTCTGTAAACA | 57.164 | 39.130 | 0.00 | 0.00 | 0.00 | 2.83 |
1780 | 1992 | 7.392418 | AGTAAAATGGTACTCCCTCTGTAAAC | 58.608 | 38.462 | 0.00 | 0.00 | 27.56 | 2.01 |
1781 | 1993 | 7.563724 | AGTAAAATGGTACTCCCTCTGTAAA | 57.436 | 36.000 | 0.00 | 0.00 | 27.56 | 2.01 |
1782 | 1994 | 7.563724 | AAGTAAAATGGTACTCCCTCTGTAA | 57.436 | 36.000 | 0.00 | 0.00 | 33.05 | 2.41 |
1783 | 1995 | 7.563724 | AAAGTAAAATGGTACTCCCTCTGTA | 57.436 | 36.000 | 0.00 | 0.00 | 33.05 | 2.74 |
1784 | 1996 | 6.449830 | AAAGTAAAATGGTACTCCCTCTGT | 57.550 | 37.500 | 0.00 | 0.00 | 33.05 | 3.41 |
1785 | 1997 | 7.621796 | ACTAAAGTAAAATGGTACTCCCTCTG | 58.378 | 38.462 | 0.00 | 0.00 | 33.05 | 3.35 |
1786 | 1998 | 7.809880 | ACTAAAGTAAAATGGTACTCCCTCT | 57.190 | 36.000 | 0.00 | 0.00 | 33.05 | 3.69 |
1787 | 1999 | 9.376075 | GTAACTAAAGTAAAATGGTACTCCCTC | 57.624 | 37.037 | 0.00 | 0.00 | 33.05 | 4.30 |
1788 | 2000 | 8.324306 | GGTAACTAAAGTAAAATGGTACTCCCT | 58.676 | 37.037 | 0.00 | 0.00 | 33.05 | 4.20 |
1789 | 2001 | 7.554118 | GGGTAACTAAAGTAAAATGGTACTCCC | 59.446 | 40.741 | 0.00 | 0.00 | 33.05 | 4.30 |
1790 | 2002 | 8.102676 | TGGGTAACTAAAGTAAAATGGTACTCC | 58.897 | 37.037 | 0.00 | 0.00 | 33.05 | 3.85 |
1791 | 2003 | 8.939929 | GTGGGTAACTAAAGTAAAATGGTACTC | 58.060 | 37.037 | 0.00 | 0.00 | 33.05 | 2.59 |
1792 | 2004 | 7.884877 | GGTGGGTAACTAAAGTAAAATGGTACT | 59.115 | 37.037 | 0.00 | 0.00 | 35.80 | 2.73 |
1806 | 2028 | 5.405279 | TCAAGAGTAAGGGTGGGTAACTAA | 58.595 | 41.667 | 0.00 | 0.00 | 0.00 | 2.24 |
1807 | 2029 | 5.014534 | TCAAGAGTAAGGGTGGGTAACTA | 57.985 | 43.478 | 0.00 | 0.00 | 0.00 | 2.24 |
1833 | 2055 | 8.722480 | TCATATGGACTGTCTTCTGTAAAATG | 57.278 | 34.615 | 7.85 | 0.67 | 0.00 | 2.32 |
1886 | 2782 | 6.509039 | GCTCGGGTGTTAATCTAATACGTTTG | 60.509 | 42.308 | 0.00 | 0.00 | 31.46 | 2.93 |
1896 | 2792 | 3.134623 | TCATCATGCTCGGGTGTTAATCT | 59.865 | 43.478 | 0.00 | 0.00 | 0.00 | 2.40 |
1964 | 3112 | 5.878406 | TCTCCAGAACTTTCTTCTTCTGT | 57.122 | 39.130 | 6.64 | 0.00 | 41.22 | 3.41 |
2016 | 3164 | 2.159476 | TGGTCATAACTGCGACGTAGAC | 60.159 | 50.000 | 20.16 | 6.83 | 32.74 | 2.59 |
2030 | 3178 | 4.081142 | ACACGGACATTGATCTTGGTCATA | 60.081 | 41.667 | 11.45 | 0.00 | 32.00 | 2.15 |
2041 | 3189 | 1.195442 | TAGGGCCACACGGACATTGA | 61.195 | 55.000 | 6.18 | 0.00 | 45.55 | 2.57 |
2054 | 3202 | 4.534797 | TCTAGACAAGACTTACTAGGGCC | 58.465 | 47.826 | 19.47 | 0.00 | 34.80 | 5.80 |
2155 | 3338 | 1.203523 | TGTGGCGAAACAAATATGGGC | 59.796 | 47.619 | 0.00 | 0.00 | 0.00 | 5.36 |
2162 | 3352 | 3.246619 | GAAACAACTGTGGCGAAACAAA | 58.753 | 40.909 | 0.00 | 0.00 | 0.00 | 2.83 |
2184 | 3396 | 5.046910 | ACTTTCAATTATGGACTGTTGCG | 57.953 | 39.130 | 0.00 | 0.00 | 0.00 | 4.85 |
2229 | 3553 | 4.862574 | TGTTCATACACACGCAGAATACTC | 59.137 | 41.667 | 0.00 | 0.00 | 0.00 | 2.59 |
2244 | 3568 | 4.037446 | TGGCAAAGGTCTGTTTGTTCATAC | 59.963 | 41.667 | 0.00 | 0.00 | 39.27 | 2.39 |
2314 | 3638 | 1.673767 | TCTTCCCCTCTGCCTGAAAT | 58.326 | 50.000 | 0.00 | 0.00 | 0.00 | 2.17 |
2334 | 3658 | 0.968901 | CTCACCATGCCATTGCTGGT | 60.969 | 55.000 | 6.97 | 6.97 | 44.55 | 4.00 |
2362 | 3686 | 2.297698 | TCCTCAGGGAACGACTGTTA | 57.702 | 50.000 | 0.00 | 0.00 | 38.78 | 2.41 |
2367 | 3691 | 2.159085 | CCACTTATCCTCAGGGAACGAC | 60.159 | 54.545 | 0.00 | 0.00 | 45.78 | 4.34 |
2409 | 3733 | 1.541233 | CCTCTCGCAGGTTGTTGTCTT | 60.541 | 52.381 | 0.00 | 0.00 | 37.53 | 3.01 |
2425 | 3749 | 1.383803 | GAGGCAGATGTCCCCCTCT | 60.384 | 63.158 | 8.50 | 0.00 | 40.51 | 3.69 |
2567 | 4088 | 4.006989 | ACTAGCAACATACGAAATGGCAA | 58.993 | 39.130 | 0.00 | 0.00 | 0.00 | 4.52 |
2576 | 4097 | 4.621991 | AGCTCCATTACTAGCAACATACG | 58.378 | 43.478 | 0.00 | 0.00 | 41.32 | 3.06 |
2618 | 4145 | 0.320374 | TGCCCACAGTTCTACTTCCG | 59.680 | 55.000 | 0.00 | 0.00 | 0.00 | 4.30 |
2745 | 4302 | 5.464965 | AACTTCGTCAACACAACTAGTTG | 57.535 | 39.130 | 29.76 | 29.76 | 45.82 | 3.16 |
2826 | 4387 | 5.902051 | ACACAAGCGAACTAAGAAACTAC | 57.098 | 39.130 | 0.00 | 0.00 | 0.00 | 2.73 |
2841 | 4402 | 0.400594 | ACCCAGGGAAGTACACAAGC | 59.599 | 55.000 | 14.54 | 0.00 | 0.00 | 4.01 |
2865 | 4427 | 9.740239 | GTACATTCTGATATGCAATGAATTTGT | 57.260 | 29.630 | 0.00 | 0.00 | 37.65 | 2.83 |
2945 | 4512 | 2.160417 | CCATCTTTCACGTCCTTCTTGC | 59.840 | 50.000 | 0.00 | 0.00 | 0.00 | 4.01 |
2953 | 4526 | 1.270625 | TGTCCCACCATCTTTCACGTC | 60.271 | 52.381 | 0.00 | 0.00 | 0.00 | 4.34 |
2955 | 4528 | 1.890876 | TTGTCCCACCATCTTTCACG | 58.109 | 50.000 | 0.00 | 0.00 | 0.00 | 4.35 |
2959 | 4532 | 5.543405 | TCAAATGAATTGTCCCACCATCTTT | 59.457 | 36.000 | 0.00 | 0.00 | 40.11 | 2.52 |
3056 | 4636 | 1.262417 | TGTTACAGGTCTCATGCCGA | 58.738 | 50.000 | 0.00 | 0.00 | 0.00 | 5.54 |
3058 | 4638 | 4.513442 | TGTTATGTTACAGGTCTCATGCC | 58.487 | 43.478 | 0.00 | 0.00 | 0.00 | 4.40 |
3079 | 4661 | 9.561069 | AGGTACATTAATAGTTTCATAAGCCTG | 57.439 | 33.333 | 0.00 | 0.00 | 0.00 | 4.85 |
3156 | 4748 | 5.750352 | AAATCTCAAAATGATGGTGCCTT | 57.250 | 34.783 | 0.00 | 0.00 | 0.00 | 4.35 |
3325 | 4921 | 7.801752 | TGGTGATTTGTTTTGAAACTTGAAAC | 58.198 | 30.769 | 7.97 | 0.00 | 39.59 | 2.78 |
3434 | 5034 | 8.610896 | GTGAAGACCATGAGATTTTCTGAATAG | 58.389 | 37.037 | 0.00 | 0.00 | 0.00 | 1.73 |
3436 | 5036 | 7.173722 | AGTGAAGACCATGAGATTTTCTGAAT | 58.826 | 34.615 | 0.00 | 0.00 | 0.00 | 2.57 |
3447 | 5047 | 4.533919 | AGTGAGAAGTGAAGACCATGAG | 57.466 | 45.455 | 0.00 | 0.00 | 0.00 | 2.90 |
3467 | 5067 | 9.554395 | AAAAAGTACAATAAACCATGGGAAAAG | 57.446 | 29.630 | 18.09 | 3.75 | 0.00 | 2.27 |
3471 | 5071 | 6.042093 | TGCAAAAAGTACAATAAACCATGGGA | 59.958 | 34.615 | 18.09 | 0.54 | 0.00 | 4.37 |
Based at the University of Bristol with support from BBSRC.
AutoCloner maintained by Alex Coulton.