Multiple sequence alignment - TraesCS4B01G081600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G081600 chr4B 100.000 4845 0 0 1 4845 79996277 80001121 0.000000e+00 8948.0
1 TraesCS4B01G081600 chr4B 79.149 470 86 8 1357 1820 80593799 80594262 1.010000e-81 315.0
2 TraesCS4B01G081600 chr4B 82.022 356 64 0 1357 1712 68961539 68961184 2.190000e-78 303.0
3 TraesCS4B01G081600 chr4B 77.215 474 94 8 1357 1820 80557171 80557640 1.030000e-66 265.0
4 TraesCS4B01G081600 chr4B 97.368 38 0 1 1889 1926 79998060 79998096 4.050000e-06 63.9
5 TraesCS4B01G081600 chr4B 97.368 38 0 1 1784 1820 79998165 79998202 4.050000e-06 63.9
6 TraesCS4B01G081600 chr4A 94.959 2202 79 7 1918 4105 542619930 542617747 0.000000e+00 3422.0
7 TraesCS4B01G081600 chr4A 94.340 848 33 6 988 1833 542620774 542619940 0.000000e+00 1286.0
8 TraesCS4B01G081600 chr4A 89.668 542 25 12 283 816 542621330 542620812 0.000000e+00 662.0
9 TraesCS4B01G081600 chr4A 80.872 413 75 3 1357 1767 551132612 551133022 6.050000e-84 322.0
10 TraesCS4B01G081600 chr4A 79.185 466 93 3 1357 1820 542555711 542555248 2.180000e-83 320.0
11 TraesCS4B01G081600 chr4A 82.824 262 29 8 30 277 603953529 603953270 2.270000e-53 220.0
12 TraesCS4B01G081600 chr4A 81.648 267 34 3 30 282 614570391 614570656 1.770000e-49 207.0
13 TraesCS4B01G081600 chr4A 97.368 38 0 1 1889 1926 542619989 542619953 4.050000e-06 63.9
14 TraesCS4B01G081600 chr4D 96.042 1541 57 4 1918 3455 54262799 54264338 0.000000e+00 2505.0
15 TraesCS4B01G081600 chr4D 93.861 847 33 9 989 1833 54261960 54262789 0.000000e+00 1258.0
16 TraesCS4B01G081600 chr4D 95.202 521 19 3 3441 3956 54265846 54266365 0.000000e+00 819.0
17 TraesCS4B01G081600 chr4D 89.333 525 25 12 301 816 54261415 54261917 8.850000e-177 630.0
18 TraesCS4B01G081600 chr4D 79.399 466 92 3 1357 1820 47336572 47336109 4.680000e-85 326.0
19 TraesCS4B01G081600 chr4D 78.571 462 93 6 1358 1816 54475108 54475566 2.830000e-77 300.0
20 TraesCS4B01G081600 chr4D 78.233 464 92 6 1357 1814 54604544 54605004 6.140000e-74 289.0
21 TraesCS4B01G081600 chr4D 76.569 478 98 3 1357 1820 54446771 54447248 2.900000e-62 250.0
22 TraesCS4B01G081600 chr4D 97.368 38 0 1 1889 1926 54262740 54262776 4.050000e-06 63.9
23 TraesCS4B01G081600 chr5A 82.385 738 82 15 4129 4829 69226287 69225561 2.500000e-167 599.0
24 TraesCS4B01G081600 chr5A 92.126 127 9 1 877 1002 27736877 27737003 1.390000e-40 178.0
25 TraesCS4B01G081600 chrUn 80.854 773 84 31 4126 4839 119814917 119815684 2.550000e-152 549.0
26 TraesCS4B01G081600 chrUn 98.246 114 1 1 881 993 27987521 27987408 1.060000e-46 198.0
27 TraesCS4B01G081600 chr3A 80.977 778 74 29 4126 4839 319952853 319953620 2.550000e-152 549.0
28 TraesCS4B01G081600 chr1D 80.607 758 69 29 4129 4829 18429124 18429860 9.300000e-142 514.0
29 TraesCS4B01G081600 chr1D 82.847 274 31 10 30 289 11958664 11958393 1.050000e-56 231.0
30 TraesCS4B01G081600 chr1A 81.346 654 73 20 4228 4839 117894128 117894774 2.030000e-133 486.0
31 TraesCS4B01G081600 chr1A 81.659 229 32 9 57 279 308953401 308953177 1.070000e-41 182.0
32 TraesCS4B01G081600 chr2D 84.500 400 41 12 4443 4829 550629022 550629413 4.580000e-100 375.0
33 TraesCS4B01G081600 chr2D 81.679 262 35 1 29 277 315859249 315858988 6.360000e-49 206.0
34 TraesCS4B01G081600 chr2D 98.182 110 2 0 880 989 352204270 352204161 4.950000e-45 193.0
35 TraesCS4B01G081600 chr2D 80.608 263 34 11 29 277 332984671 332984412 2.300000e-43 187.0
36 TraesCS4B01G081600 chr2D 83.784 185 29 1 95 278 233167571 233167755 1.790000e-39 174.0
37 TraesCS4B01G081600 chr1B 82.422 256 28 11 39 282 148187116 148187366 1.770000e-49 207.0
38 TraesCS4B01G081600 chr1B 84.530 181 25 2 99 278 370323759 370323937 4.980000e-40 176.0
39 TraesCS4B01G081600 chr7D 82.072 251 26 11 29 265 222038394 222038639 3.830000e-46 196.0
40 TraesCS4B01G081600 chr7D 78.967 271 42 9 26 281 54662069 54661799 2.320000e-38 171.0
41 TraesCS4B01G081600 chr5B 99.074 108 1 0 883 990 511839681 511839788 1.380000e-45 195.0
42 TraesCS4B01G081600 chr6D 80.682 264 38 3 29 279 24007396 24007133 4.950000e-45 193.0
43 TraesCS4B01G081600 chr6B 81.061 264 30 6 30 277 365632378 365632637 4.950000e-45 193.0
44 TraesCS4B01G081600 chr6B 80.228 263 36 10 29 277 269978180 269977920 2.980000e-42 183.0
45 TraesCS4B01G081600 chr7B 97.297 111 3 0 880 990 3887324 3887214 6.400000e-44 189.0
46 TraesCS4B01G081600 chr7B 97.297 111 3 0 879 989 174674128 174674018 6.400000e-44 189.0
47 TraesCS4B01G081600 chr7B 96.491 114 4 0 883 996 697616822 697616709 6.400000e-44 189.0
48 TraesCS4B01G081600 chr6A 95.726 117 4 1 879 994 431992359 431992243 2.300000e-43 187.0
49 TraesCS4B01G081600 chr2B 94.958 119 4 2 880 997 682917442 682917325 8.280000e-43 185.0
50 TraesCS4B01G081600 chr7A 84.358 179 27 1 94 272 227566145 227566322 1.790000e-39 174.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G081600 chr4B 79996277 80001121 4844 False 3025.266667 8948 98.245333 1 4845 3 chr4B.!!$F3 4844
1 TraesCS4B01G081600 chr4A 542617747 542621330 3583 True 1358.475000 3422 94.083750 283 4105 4 chr4A.!!$R3 3822
2 TraesCS4B01G081600 chr4D 54261415 54266365 4950 False 1055.180000 2505 94.361200 301 3956 5 chr4D.!!$F4 3655
3 TraesCS4B01G081600 chr5A 69225561 69226287 726 True 599.000000 599 82.385000 4129 4829 1 chr5A.!!$R1 700
4 TraesCS4B01G081600 chrUn 119814917 119815684 767 False 549.000000 549 80.854000 4126 4839 1 chrUn.!!$F1 713
5 TraesCS4B01G081600 chr3A 319952853 319953620 767 False 549.000000 549 80.977000 4126 4839 1 chr3A.!!$F1 713
6 TraesCS4B01G081600 chr1D 18429124 18429860 736 False 514.000000 514 80.607000 4129 4829 1 chr1D.!!$F1 700
7 TraesCS4B01G081600 chr1A 117894128 117894774 646 False 486.000000 486 81.346000 4228 4839 1 chr1A.!!$F1 611

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
733 742 0.040499 AGGTCTGGACTCTGGAGGAC 59.960 60.0 2.58 0.43 0.00 3.85 F
1840 1854 0.242017 CCAGCTTGCTTGCTTGTACC 59.758 55.0 1.40 0.00 41.98 3.34 F
1867 1881 0.178992 TTGCCAGCTTGCTTGTACCT 60.179 50.0 11.53 0.00 0.00 3.08 F
3664 5215 0.249953 TTTTGCTCCAGCGTAACGGA 60.250 50.0 0.00 0.00 45.83 4.69 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1848 1862 0.178992 AGGTACAAGCAAGCTGGCAA 60.179 50.000 17.28 0.0 35.83 4.52 R
3661 5212 0.246360 GGGTTTGCCATTCCTTTCCG 59.754 55.000 0.00 0.0 36.17 4.30 R
3707 5258 1.142870 CCAACCTCCTTCAAGGACACA 59.857 52.381 0.34 0.0 40.06 3.72 R
4696 6326 0.246360 CACGTAGGCTGATGTGGACA 59.754 55.000 0.00 0.0 33.46 4.02 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 2.163818 TTTCACAGCCGTACCTTCTG 57.836 50.000 3.09 3.09 0.00 3.02
21 22 0.320421 TTCACAGCCGTACCTTCTGC 60.320 55.000 4.23 0.00 0.00 4.26
22 23 1.741770 CACAGCCGTACCTTCTGCC 60.742 63.158 4.23 0.00 0.00 4.85
23 24 1.913762 ACAGCCGTACCTTCTGCCT 60.914 57.895 4.23 0.00 0.00 4.75
24 25 1.448540 CAGCCGTACCTTCTGCCTG 60.449 63.158 0.00 0.00 0.00 4.85
25 26 2.820037 GCCGTACCTTCTGCCTGC 60.820 66.667 0.00 0.00 0.00 4.85
26 27 2.982130 CCGTACCTTCTGCCTGCT 59.018 61.111 0.00 0.00 0.00 4.24
27 28 1.956629 GCCGTACCTTCTGCCTGCTA 61.957 60.000 0.00 0.00 0.00 3.49
28 29 0.103208 CCGTACCTTCTGCCTGCTAG 59.897 60.000 0.00 0.00 0.00 3.42
29 30 0.818296 CGTACCTTCTGCCTGCTAGT 59.182 55.000 0.00 0.00 0.00 2.57
30 31 2.022195 CGTACCTTCTGCCTGCTAGTA 58.978 52.381 0.00 0.00 0.00 1.82
31 32 2.223525 CGTACCTTCTGCCTGCTAGTAC 60.224 54.545 0.00 0.00 0.00 2.73
32 33 2.239681 ACCTTCTGCCTGCTAGTACT 57.760 50.000 0.00 0.00 0.00 2.73
33 34 2.104170 ACCTTCTGCCTGCTAGTACTC 58.896 52.381 0.00 0.00 0.00 2.59
34 35 2.291930 ACCTTCTGCCTGCTAGTACTCT 60.292 50.000 0.00 0.00 0.00 3.24
35 36 2.360801 CCTTCTGCCTGCTAGTACTCTC 59.639 54.545 0.00 0.00 0.00 3.20
36 37 3.287222 CTTCTGCCTGCTAGTACTCTCT 58.713 50.000 0.00 0.00 0.00 3.10
37 38 2.925724 TCTGCCTGCTAGTACTCTCTC 58.074 52.381 0.00 0.00 0.00 3.20
38 39 1.953686 CTGCCTGCTAGTACTCTCTCC 59.046 57.143 0.00 0.00 0.00 3.71
39 40 0.948678 GCCTGCTAGTACTCTCTCCG 59.051 60.000 0.00 0.00 0.00 4.63
40 41 1.747898 GCCTGCTAGTACTCTCTCCGT 60.748 57.143 0.00 0.00 0.00 4.69
41 42 2.645802 CCTGCTAGTACTCTCTCCGTT 58.354 52.381 0.00 0.00 0.00 4.44
42 43 3.018149 CCTGCTAGTACTCTCTCCGTTT 58.982 50.000 0.00 0.00 0.00 3.60
43 44 3.444388 CCTGCTAGTACTCTCTCCGTTTT 59.556 47.826 0.00 0.00 0.00 2.43
44 45 4.082136 CCTGCTAGTACTCTCTCCGTTTTT 60.082 45.833 0.00 0.00 0.00 1.94
45 46 5.125097 CCTGCTAGTACTCTCTCCGTTTTTA 59.875 44.000 0.00 0.00 0.00 1.52
46 47 6.183360 CCTGCTAGTACTCTCTCCGTTTTTAT 60.183 42.308 0.00 0.00 0.00 1.40
47 48 7.166691 TGCTAGTACTCTCTCCGTTTTTATT 57.833 36.000 0.00 0.00 0.00 1.40
48 49 7.609056 TGCTAGTACTCTCTCCGTTTTTATTT 58.391 34.615 0.00 0.00 0.00 1.40
49 50 8.742777 TGCTAGTACTCTCTCCGTTTTTATTTA 58.257 33.333 0.00 0.00 0.00 1.40
50 51 9.235537 GCTAGTACTCTCTCCGTTTTTATTTAG 57.764 37.037 0.00 0.00 0.00 1.85
51 52 9.235537 CTAGTACTCTCTCCGTTTTTATTTAGC 57.764 37.037 0.00 0.00 0.00 3.09
52 53 7.040494 AGTACTCTCTCCGTTTTTATTTAGCC 58.960 38.462 0.00 0.00 0.00 3.93
53 54 5.183969 ACTCTCTCCGTTTTTATTTAGCCC 58.816 41.667 0.00 0.00 0.00 5.19
54 55 5.168647 TCTCTCCGTTTTTATTTAGCCCA 57.831 39.130 0.00 0.00 0.00 5.36
55 56 5.751586 TCTCTCCGTTTTTATTTAGCCCAT 58.248 37.500 0.00 0.00 0.00 4.00
56 57 5.588648 TCTCTCCGTTTTTATTTAGCCCATG 59.411 40.000 0.00 0.00 0.00 3.66
57 58 5.258051 TCTCCGTTTTTATTTAGCCCATGT 58.742 37.500 0.00 0.00 0.00 3.21
58 59 6.416415 TCTCCGTTTTTATTTAGCCCATGTA 58.584 36.000 0.00 0.00 0.00 2.29
59 60 7.057894 TCTCCGTTTTTATTTAGCCCATGTAT 58.942 34.615 0.00 0.00 0.00 2.29
60 61 7.558444 TCTCCGTTTTTATTTAGCCCATGTATT 59.442 33.333 0.00 0.00 0.00 1.89
61 62 8.749026 TCCGTTTTTATTTAGCCCATGTATTA 57.251 30.769 0.00 0.00 0.00 0.98
62 63 8.842280 TCCGTTTTTATTTAGCCCATGTATTAG 58.158 33.333 0.00 0.00 0.00 1.73
63 64 8.079809 CCGTTTTTATTTAGCCCATGTATTAGG 58.920 37.037 0.00 0.00 0.00 2.69
64 65 8.626526 CGTTTTTATTTAGCCCATGTATTAGGT 58.373 33.333 0.00 0.00 0.00 3.08
68 69 6.976934 ATTTAGCCCATGTATTAGGTTTGG 57.023 37.500 0.00 0.00 0.00 3.28
69 70 5.459982 TTAGCCCATGTATTAGGTTTGGT 57.540 39.130 0.00 0.00 0.00 3.67
70 71 3.898482 AGCCCATGTATTAGGTTTGGTC 58.102 45.455 0.00 0.00 0.00 4.02
71 72 3.268334 AGCCCATGTATTAGGTTTGGTCA 59.732 43.478 0.00 0.00 0.00 4.02
72 73 4.020543 GCCCATGTATTAGGTTTGGTCAA 58.979 43.478 0.00 0.00 0.00 3.18
73 74 4.464597 GCCCATGTATTAGGTTTGGTCAAA 59.535 41.667 0.00 0.00 0.00 2.69
74 75 5.394115 GCCCATGTATTAGGTTTGGTCAAAG 60.394 44.000 0.00 0.00 0.00 2.77
75 76 5.714806 CCCATGTATTAGGTTTGGTCAAAGT 59.285 40.000 0.00 0.00 0.00 2.66
76 77 6.127730 CCCATGTATTAGGTTTGGTCAAAGTC 60.128 42.308 0.00 0.00 0.00 3.01
77 78 6.432783 CCATGTATTAGGTTTGGTCAAAGTCA 59.567 38.462 0.00 0.00 0.00 3.41
78 79 7.040062 CCATGTATTAGGTTTGGTCAAAGTCAA 60.040 37.037 0.00 0.00 0.00 3.18
79 80 7.504924 TGTATTAGGTTTGGTCAAAGTCAAG 57.495 36.000 0.00 0.00 0.00 3.02
80 81 4.911514 TTAGGTTTGGTCAAAGTCAAGC 57.088 40.909 0.00 0.00 0.00 4.01
81 82 3.018423 AGGTTTGGTCAAAGTCAAGCT 57.982 42.857 0.00 0.00 0.00 3.74
82 83 3.365472 AGGTTTGGTCAAAGTCAAGCTT 58.635 40.909 0.00 0.00 39.52 3.74
84 85 4.953579 AGGTTTGGTCAAAGTCAAGCTTTA 59.046 37.500 0.00 0.00 44.95 1.85
85 86 5.598417 AGGTTTGGTCAAAGTCAAGCTTTAT 59.402 36.000 0.00 0.00 44.95 1.40
86 87 6.775629 AGGTTTGGTCAAAGTCAAGCTTTATA 59.224 34.615 0.00 0.00 44.95 0.98
87 88 7.286775 AGGTTTGGTCAAAGTCAAGCTTTATAA 59.713 33.333 0.00 0.00 44.95 0.98
88 89 7.923878 GGTTTGGTCAAAGTCAAGCTTTATAAA 59.076 33.333 0.00 0.00 44.95 1.40
89 90 8.752254 GTTTGGTCAAAGTCAAGCTTTATAAAC 58.248 33.333 0.00 0.00 44.95 2.01
90 91 7.817418 TGGTCAAAGTCAAGCTTTATAAACT 57.183 32.000 0.00 0.00 44.95 2.66
91 92 8.232913 TGGTCAAAGTCAAGCTTTATAAACTT 57.767 30.769 0.00 0.00 44.95 2.66
92 93 8.691797 TGGTCAAAGTCAAGCTTTATAAACTTT 58.308 29.630 0.00 5.64 44.95 2.66
160 161 9.647797 AGATTAATTATTGAGTGTACGTTCACA 57.352 29.630 24.53 7.58 40.37 3.58
163 164 7.899178 AATTATTGAGTGTACGTTCACATCA 57.101 32.000 24.53 20.27 40.37 3.07
164 165 8.492673 AATTATTGAGTGTACGTTCACATCAT 57.507 30.769 24.53 15.25 40.37 2.45
165 166 9.594478 AATTATTGAGTGTACGTTCACATCATA 57.406 29.630 24.53 14.42 40.37 2.15
166 167 9.764363 ATTATTGAGTGTACGTTCACATCATAT 57.236 29.630 24.53 18.94 40.37 1.78
169 170 8.628882 TTGAGTGTACGTTCACATCATATAAG 57.371 34.615 24.53 0.00 40.37 1.73
170 171 7.768240 TGAGTGTACGTTCACATCATATAAGT 58.232 34.615 24.53 2.48 40.37 2.24
171 172 8.248253 TGAGTGTACGTTCACATCATATAAGTT 58.752 33.333 24.53 1.99 40.37 2.66
172 173 8.997621 AGTGTACGTTCACATCATATAAGTTT 57.002 30.769 24.53 0.00 40.37 2.66
173 174 8.869897 AGTGTACGTTCACATCATATAAGTTTG 58.130 33.333 24.53 0.00 40.37 2.93
174 175 8.653338 GTGTACGTTCACATCATATAAGTTTGT 58.347 33.333 19.03 0.00 38.12 2.83
175 176 9.210329 TGTACGTTCACATCATATAAGTTTGTT 57.790 29.630 0.00 0.00 0.00 2.83
476 477 1.284785 GTCCAGGTGAATGAATCCCCA 59.715 52.381 0.00 0.00 0.00 4.96
477 478 1.284785 TCCAGGTGAATGAATCCCCAC 59.715 52.381 0.00 0.00 0.00 4.61
484 485 5.194537 AGGTGAATGAATCCCCACTATTCTT 59.805 40.000 0.00 0.00 34.95 2.52
602 610 4.437587 CCAAGCCTGGAGCCCTGG 62.438 72.222 0.00 11.33 46.92 4.45
603 611 3.333219 CAAGCCTGGAGCCCTGGA 61.333 66.667 17.59 0.00 44.09 3.86
604 612 2.286732 AAGCCTGGAGCCCTGGAT 60.287 61.111 17.59 10.68 44.09 3.41
635 643 2.457366 TCGACCTCTTTTCTTCTGCC 57.543 50.000 0.00 0.00 0.00 4.85
675 684 1.497278 CCTTCGTGTGCATTCGTGG 59.503 57.895 11.88 11.35 0.00 4.94
711 720 5.574891 TTTGTTGCAGTTCTTTAGCTCAA 57.425 34.783 0.00 0.00 0.00 3.02
716 725 4.067896 TGCAGTTCTTTAGCTCAAGAAGG 58.932 43.478 20.72 16.77 42.26 3.46
723 732 3.963428 TTAGCTCAAGAAGGTCTGGAC 57.037 47.619 0.00 0.00 36.91 4.02
724 733 2.022718 AGCTCAAGAAGGTCTGGACT 57.977 50.000 0.67 0.00 0.00 3.85
725 734 1.899142 AGCTCAAGAAGGTCTGGACTC 59.101 52.381 0.67 0.00 0.00 3.36
726 735 1.899142 GCTCAAGAAGGTCTGGACTCT 59.101 52.381 0.67 0.00 0.00 3.24
727 736 2.353605 GCTCAAGAAGGTCTGGACTCTG 60.354 54.545 0.67 0.00 0.00 3.35
728 737 2.233431 CTCAAGAAGGTCTGGACTCTGG 59.767 54.545 0.67 0.00 0.00 3.86
729 738 2.158310 TCAAGAAGGTCTGGACTCTGGA 60.158 50.000 0.67 0.00 0.00 3.86
730 739 2.230130 AGAAGGTCTGGACTCTGGAG 57.770 55.000 0.67 0.00 0.00 3.86
731 740 1.190643 GAAGGTCTGGACTCTGGAGG 58.809 60.000 2.58 0.00 0.00 4.30
732 741 0.787084 AAGGTCTGGACTCTGGAGGA 59.213 55.000 2.58 0.00 0.00 3.71
733 742 0.040499 AGGTCTGGACTCTGGAGGAC 59.960 60.000 2.58 0.43 0.00 3.85
735 744 1.621072 GGTCTGGACTCTGGAGGACAT 60.621 57.143 2.58 0.00 0.00 3.06
736 745 2.183679 GTCTGGACTCTGGAGGACATT 58.816 52.381 2.58 0.00 0.00 2.71
737 746 2.569404 GTCTGGACTCTGGAGGACATTT 59.431 50.000 2.58 0.00 0.00 2.32
738 747 2.834549 TCTGGACTCTGGAGGACATTTC 59.165 50.000 2.58 0.00 0.00 2.17
739 748 2.836981 CTGGACTCTGGAGGACATTTCT 59.163 50.000 2.58 0.00 0.00 2.52
740 749 2.568956 TGGACTCTGGAGGACATTTCTG 59.431 50.000 2.58 0.00 0.00 3.02
741 750 2.093235 GGACTCTGGAGGACATTTCTGG 60.093 54.545 2.58 0.00 0.00 3.86
742 751 1.912043 ACTCTGGAGGACATTTCTGGG 59.088 52.381 2.58 0.00 0.00 4.45
743 752 2.191400 CTCTGGAGGACATTTCTGGGA 58.809 52.381 0.00 0.00 0.00 4.37
744 753 2.776536 CTCTGGAGGACATTTCTGGGAT 59.223 50.000 0.00 0.00 0.00 3.85
786 795 8.615878 ACAATATATATTACTCTTGCCGCAAA 57.384 30.769 7.33 0.00 0.00 3.68
794 803 6.935741 TTACTCTTGCCGCAAATTGTATAT 57.064 33.333 7.33 0.00 0.00 0.86
804 813 6.202954 GCCGCAAATTGTATATCTCAAGTAGT 59.797 38.462 0.00 0.00 0.00 2.73
816 825 4.001652 TCTCAAGTAGTAGTGACCACTCG 58.998 47.826 5.87 0.00 42.54 4.18
817 826 4.001652 CTCAAGTAGTAGTGACCACTCGA 58.998 47.826 5.87 0.00 42.54 4.04
818 827 4.001652 TCAAGTAGTAGTGACCACTCGAG 58.998 47.826 11.84 11.84 42.54 4.04
819 828 3.699411 AGTAGTAGTGACCACTCGAGT 57.301 47.619 13.58 13.58 42.54 4.18
821 830 5.157940 AGTAGTAGTGACCACTCGAGTAA 57.842 43.478 19.57 1.30 42.54 2.24
822 831 5.555017 AGTAGTAGTGACCACTCGAGTAAA 58.445 41.667 19.57 0.91 42.54 2.01
823 832 6.000219 AGTAGTAGTGACCACTCGAGTAAAA 59.000 40.000 19.57 1.29 42.54 1.52
824 833 5.779529 AGTAGTGACCACTCGAGTAAAAA 57.220 39.130 19.57 1.69 42.54 1.94
825 834 5.527033 AGTAGTGACCACTCGAGTAAAAAC 58.473 41.667 19.57 14.21 42.54 2.43
826 835 4.395959 AGTGACCACTCGAGTAAAAACA 57.604 40.909 19.57 11.27 36.92 2.83
827 836 4.957296 AGTGACCACTCGAGTAAAAACAT 58.043 39.130 19.57 0.00 36.92 2.71
828 837 6.092955 AGTGACCACTCGAGTAAAAACATA 57.907 37.500 19.57 0.00 36.92 2.29
829 838 6.698380 AGTGACCACTCGAGTAAAAACATAT 58.302 36.000 19.57 5.33 36.92 1.78
830 839 7.159372 AGTGACCACTCGAGTAAAAACATATT 58.841 34.615 19.57 0.00 36.92 1.28
831 840 7.660208 AGTGACCACTCGAGTAAAAACATATTT 59.340 33.333 19.57 0.00 36.92 1.40
832 841 8.287503 GTGACCACTCGAGTAAAAACATATTTT 58.712 33.333 19.57 0.00 39.81 1.82
848 857 3.993382 TTTTTGAGGCGTACCGAGT 57.007 47.368 0.00 0.00 42.76 4.18
853 862 3.383620 TTGAGGCGTACCGAGTAAAAA 57.616 42.857 0.00 0.00 42.76 1.94
856 865 5.266733 TGAGGCGTACCGAGTAAAAATAT 57.733 39.130 0.00 0.00 42.76 1.28
878 887 8.888579 ATATTTTGTTAGAATCGGTGTAGAGG 57.111 34.615 0.00 0.00 0.00 3.69
880 889 6.540438 TTTGTTAGAATCGGTGTAGAGGAT 57.460 37.500 0.00 0.00 0.00 3.24
882 891 7.834881 TTGTTAGAATCGGTGTAGAGGATAT 57.165 36.000 0.00 0.00 0.00 1.63
884 893 8.332996 TGTTAGAATCGGTGTAGAGGATATAC 57.667 38.462 0.00 0.00 0.00 1.47
885 894 8.162085 TGTTAGAATCGGTGTAGAGGATATACT 58.838 37.037 0.00 0.00 0.00 2.12
886 895 8.667463 GTTAGAATCGGTGTAGAGGATATACTC 58.333 40.741 6.87 6.87 37.77 2.59
887 896 6.181908 AGAATCGGTGTAGAGGATATACTCC 58.818 44.000 11.60 0.00 45.33 3.85
888 897 4.298103 TCGGTGTAGAGGATATACTCCC 57.702 50.000 11.60 4.72 46.27 4.30
889 898 3.915073 TCGGTGTAGAGGATATACTCCCT 59.085 47.826 11.60 0.00 46.27 4.20
890 899 4.019501 TCGGTGTAGAGGATATACTCCCTC 60.020 50.000 11.60 5.73 46.27 4.30
896 905 4.036941 GAGGATATACTCCCTCCGTTCT 57.963 50.000 3.22 0.00 46.27 3.01
897 906 3.759618 GAGGATATACTCCCTCCGTTCTG 59.240 52.174 3.22 0.00 46.27 3.02
898 907 3.398292 AGGATATACTCCCTCCGTTCTGA 59.602 47.826 0.00 0.00 46.27 3.27
899 908 4.140994 AGGATATACTCCCTCCGTTCTGAA 60.141 45.833 0.00 0.00 46.27 3.02
900 909 4.773149 GGATATACTCCCTCCGTTCTGAAT 59.227 45.833 0.00 0.00 38.19 2.57
901 910 5.246429 GGATATACTCCCTCCGTTCTGAATT 59.754 44.000 0.00 0.00 38.19 2.17
902 911 6.436532 GGATATACTCCCTCCGTTCTGAATTA 59.563 42.308 0.00 0.00 38.19 1.40
903 912 3.889520 ACTCCCTCCGTTCTGAATTAC 57.110 47.619 0.00 0.00 0.00 1.89
904 913 3.442076 ACTCCCTCCGTTCTGAATTACT 58.558 45.455 0.00 0.00 0.00 2.24
905 914 3.838903 ACTCCCTCCGTTCTGAATTACTT 59.161 43.478 0.00 0.00 0.00 2.24
906 915 4.184629 CTCCCTCCGTTCTGAATTACTTG 58.815 47.826 0.00 0.00 0.00 3.16
907 916 3.581332 TCCCTCCGTTCTGAATTACTTGT 59.419 43.478 0.00 0.00 0.00 3.16
908 917 3.933332 CCCTCCGTTCTGAATTACTTGTC 59.067 47.826 0.00 0.00 0.00 3.18
909 918 3.612860 CCTCCGTTCTGAATTACTTGTCG 59.387 47.826 0.00 0.00 0.00 4.35
910 919 2.991190 TCCGTTCTGAATTACTTGTCGC 59.009 45.455 0.00 0.00 0.00 5.19
911 920 2.734606 CCGTTCTGAATTACTTGTCGCA 59.265 45.455 0.00 0.00 0.00 5.10
912 921 3.423123 CCGTTCTGAATTACTTGTCGCAC 60.423 47.826 0.00 0.00 0.00 5.34
913 922 3.718036 CGTTCTGAATTACTTGTCGCACG 60.718 47.826 0.00 0.00 0.00 5.34
914 923 3.021269 TCTGAATTACTTGTCGCACGT 57.979 42.857 0.00 0.00 0.00 4.49
915 924 4.163458 TCTGAATTACTTGTCGCACGTA 57.837 40.909 0.00 0.00 0.00 3.57
916 925 4.740268 TCTGAATTACTTGTCGCACGTAT 58.260 39.130 0.00 0.00 0.00 3.06
917 926 4.561213 TCTGAATTACTTGTCGCACGTATG 59.439 41.667 0.00 0.00 0.00 2.39
918 927 3.615056 TGAATTACTTGTCGCACGTATGG 59.385 43.478 0.00 0.00 0.00 2.74
919 928 3.513680 ATTACTTGTCGCACGTATGGA 57.486 42.857 0.00 0.00 0.00 3.41
920 929 3.513680 TTACTTGTCGCACGTATGGAT 57.486 42.857 0.00 0.00 0.00 3.41
921 930 1.640428 ACTTGTCGCACGTATGGATG 58.360 50.000 0.00 0.00 0.00 3.51
922 931 1.067142 ACTTGTCGCACGTATGGATGT 60.067 47.619 0.00 0.00 0.00 3.06
923 932 2.164827 ACTTGTCGCACGTATGGATGTA 59.835 45.455 0.00 0.00 0.00 2.29
924 933 3.181479 ACTTGTCGCACGTATGGATGTAT 60.181 43.478 0.00 0.00 0.00 2.29
925 934 3.007979 TGTCGCACGTATGGATGTATC 57.992 47.619 0.00 0.00 0.00 2.24
926 935 2.621526 TGTCGCACGTATGGATGTATCT 59.378 45.455 0.00 0.00 0.00 1.98
927 936 3.816523 TGTCGCACGTATGGATGTATCTA 59.183 43.478 0.00 0.00 0.00 1.98
928 937 4.083484 TGTCGCACGTATGGATGTATCTAG 60.083 45.833 0.00 0.00 0.00 2.43
929 938 4.153655 GTCGCACGTATGGATGTATCTAGA 59.846 45.833 0.00 0.00 0.00 2.43
930 939 4.941873 TCGCACGTATGGATGTATCTAGAT 59.058 41.667 10.73 10.73 0.00 1.98
931 940 5.030936 CGCACGTATGGATGTATCTAGATG 58.969 45.833 15.79 0.00 0.00 2.90
932 941 5.392057 CGCACGTATGGATGTATCTAGATGT 60.392 44.000 15.79 1.25 30.36 3.06
933 942 6.183360 CGCACGTATGGATGTATCTAGATGTA 60.183 42.308 15.79 4.44 29.44 2.29
934 943 7.467403 CGCACGTATGGATGTATCTAGATGTAT 60.467 40.741 15.79 9.11 29.44 2.29
935 944 8.191446 GCACGTATGGATGTATCTAGATGTATT 58.809 37.037 15.79 0.00 29.44 1.89
963 972 8.397575 AGTTCTAGATACATCTATTTCAGCGA 57.602 34.615 0.00 0.00 38.60 4.93
964 973 8.293867 AGTTCTAGATACATCTATTTCAGCGAC 58.706 37.037 0.00 0.00 38.60 5.19
965 974 6.832804 TCTAGATACATCTATTTCAGCGACG 58.167 40.000 0.00 0.00 38.60 5.12
966 975 5.690997 AGATACATCTATTTCAGCGACGA 57.309 39.130 0.00 0.00 34.85 4.20
967 976 5.694816 AGATACATCTATTTCAGCGACGAG 58.305 41.667 0.00 0.00 34.85 4.18
968 977 3.784701 ACATCTATTTCAGCGACGAGT 57.215 42.857 0.00 0.00 0.00 4.18
969 978 4.895224 ACATCTATTTCAGCGACGAGTA 57.105 40.909 0.00 0.00 0.00 2.59
970 979 5.244785 ACATCTATTTCAGCGACGAGTAA 57.755 39.130 0.00 0.00 0.00 2.24
971 980 5.833082 ACATCTATTTCAGCGACGAGTAAT 58.167 37.500 0.00 0.00 0.00 1.89
972 981 6.273825 ACATCTATTTCAGCGACGAGTAATT 58.726 36.000 0.00 0.00 0.00 1.40
973 982 6.757010 ACATCTATTTCAGCGACGAGTAATTT 59.243 34.615 0.00 0.00 0.00 1.82
974 983 6.569228 TCTATTTCAGCGACGAGTAATTTG 57.431 37.500 0.00 0.00 0.00 2.32
975 984 4.600012 ATTTCAGCGACGAGTAATTTGG 57.400 40.909 0.00 0.00 0.00 3.28
976 985 3.306917 TTCAGCGACGAGTAATTTGGA 57.693 42.857 0.00 0.00 0.00 3.53
977 986 3.306917 TCAGCGACGAGTAATTTGGAA 57.693 42.857 0.00 0.00 0.00 3.53
978 987 2.991190 TCAGCGACGAGTAATTTGGAAC 59.009 45.455 0.00 0.00 0.00 3.62
979 988 1.990563 AGCGACGAGTAATTTGGAACG 59.009 47.619 0.00 0.00 0.00 3.95
980 989 1.060122 GCGACGAGTAATTTGGAACGG 59.940 52.381 0.00 0.00 0.00 4.44
981 990 2.598589 CGACGAGTAATTTGGAACGGA 58.401 47.619 0.00 0.00 0.00 4.69
982 991 2.597305 CGACGAGTAATTTGGAACGGAG 59.403 50.000 0.00 0.00 0.00 4.63
983 992 2.928116 GACGAGTAATTTGGAACGGAGG 59.072 50.000 0.00 0.00 0.00 4.30
984 993 2.277084 CGAGTAATTTGGAACGGAGGG 58.723 52.381 0.00 0.00 0.00 4.30
985 994 2.093869 CGAGTAATTTGGAACGGAGGGA 60.094 50.000 0.00 0.00 0.00 4.20
986 995 3.532542 GAGTAATTTGGAACGGAGGGAG 58.467 50.000 0.00 0.00 0.00 4.30
997 1006 0.395862 CGGAGGGAGTAGAAGCTGGA 60.396 60.000 0.00 0.00 0.00 3.86
1011 1020 7.887495 AGTAGAAGCTGGAAGATGAAAAATTCT 59.113 33.333 0.00 0.00 34.07 2.40
1075 1084 2.809601 CTCGTTTCGTCAGGCGGG 60.810 66.667 0.00 0.00 41.72 6.13
1107 1116 5.957798 AGTTCAAGACATTGCATGGTAATG 58.042 37.500 5.65 5.65 40.48 1.90
1122 1131 3.181445 TGGTAATGTGCTCTGTTCCAAGT 60.181 43.478 0.00 0.00 0.00 3.16
1127 1136 7.499232 GGTAATGTGCTCTGTTCCAAGTAATAT 59.501 37.037 0.00 0.00 0.00 1.28
1135 1144 7.066284 GCTCTGTTCCAAGTAATATGACATTGT 59.934 37.037 0.00 0.00 0.00 2.71
1147 1156 6.932356 ATATGACATTGTAGTGCCTCTTTG 57.068 37.500 0.00 0.00 0.00 2.77
1158 1169 3.960102 AGTGCCTCTTTGTTTGGATCAAA 59.040 39.130 0.00 0.00 34.34 2.69
1442 1453 2.959465 AGGCCCTAATGGTATTCTGC 57.041 50.000 0.00 0.00 36.04 4.26
1578 1589 2.622064 AGTTCTCGCTTCAAGGTTGT 57.378 45.000 0.00 0.00 0.00 3.32
1609 1620 5.465390 TGATTCTAGTGGTTGTGAGAAAACG 59.535 40.000 0.00 0.00 32.00 3.60
1658 1672 6.045318 ACTATGAGTGATCAAGAACCAATCG 58.955 40.000 0.00 0.00 0.00 3.34
1681 1695 5.106555 CGCAAATTCTACAGAAATGTCAGGT 60.107 40.000 0.00 0.00 37.61 4.00
1697 1711 1.135083 CAGGTAGTTCCAGCGATCGTT 60.135 52.381 17.81 8.05 39.02 3.85
1833 1847 2.737376 GCTTGCCAGCTTGCTTGC 60.737 61.111 11.53 11.12 43.51 4.01
1834 1848 3.048602 CTTGCCAGCTTGCTTGCT 58.951 55.556 17.40 0.00 45.18 3.91
1835 1849 1.366366 CTTGCCAGCTTGCTTGCTT 59.634 52.632 17.40 0.00 41.98 3.91
1836 1850 0.944311 CTTGCCAGCTTGCTTGCTTG 60.944 55.000 17.40 8.15 41.98 4.01
1838 1852 0.822944 TGCCAGCTTGCTTGCTTGTA 60.823 50.000 17.40 0.00 41.98 2.41
1839 1853 0.387750 GCCAGCTTGCTTGCTTGTAC 60.388 55.000 10.82 0.00 41.98 2.90
1840 1854 0.242017 CCAGCTTGCTTGCTTGTACC 59.758 55.000 1.40 0.00 41.98 3.34
1842 1856 1.610522 CAGCTTGCTTGCTTGTACCTT 59.389 47.619 1.40 0.00 41.98 3.50
1843 1857 2.035066 CAGCTTGCTTGCTTGTACCTTT 59.965 45.455 1.40 0.00 41.98 3.11
1844 1858 3.253188 CAGCTTGCTTGCTTGTACCTTTA 59.747 43.478 1.40 0.00 41.98 1.85
1845 1859 3.888930 AGCTTGCTTGCTTGTACCTTTAA 59.111 39.130 0.00 0.00 40.93 1.52
1846 1860 4.022849 AGCTTGCTTGCTTGTACCTTTAAG 60.023 41.667 0.00 0.00 40.93 1.85
1852 1866 3.217599 GCTTGTACCTTTAAGCTTGCC 57.782 47.619 9.86 0.00 44.41 4.52
1853 1867 2.556622 GCTTGTACCTTTAAGCTTGCCA 59.443 45.455 9.86 0.00 44.41 4.92
1854 1868 3.366374 GCTTGTACCTTTAAGCTTGCCAG 60.366 47.826 9.86 1.75 44.41 4.85
1863 1877 2.732658 GCTTGCCAGCTTGCTTGT 59.267 55.556 11.53 0.00 43.51 3.16
1864 1878 1.959085 GCTTGCCAGCTTGCTTGTA 59.041 52.632 11.53 0.00 43.51 2.41
1865 1879 0.387750 GCTTGCCAGCTTGCTTGTAC 60.388 55.000 11.53 0.00 43.51 2.90
1866 1880 0.242017 CTTGCCAGCTTGCTTGTACC 59.758 55.000 11.53 0.00 0.00 3.34
1867 1881 0.178992 TTGCCAGCTTGCTTGTACCT 60.179 50.000 11.53 0.00 0.00 3.08
1868 1882 0.178992 TGCCAGCTTGCTTGTACCTT 60.179 50.000 11.53 0.00 0.00 3.50
1869 1883 0.961753 GCCAGCTTGCTTGTACCTTT 59.038 50.000 1.78 0.00 0.00 3.11
1870 1884 2.159382 GCCAGCTTGCTTGTACCTTTA 58.841 47.619 1.78 0.00 0.00 1.85
1871 1885 2.556622 GCCAGCTTGCTTGTACCTTTAA 59.443 45.455 1.78 0.00 0.00 1.52
1872 1886 3.366374 GCCAGCTTGCTTGTACCTTTAAG 60.366 47.826 1.78 0.00 0.00 1.85
1873 1887 3.821033 CCAGCTTGCTTGTACCTTTAAGT 59.179 43.478 0.00 0.00 0.00 2.24
1874 1888 4.278419 CCAGCTTGCTTGTACCTTTAAGTT 59.722 41.667 0.00 0.00 0.00 2.66
1875 1889 5.215160 CAGCTTGCTTGTACCTTTAAGTTG 58.785 41.667 0.00 0.00 0.00 3.16
1876 1890 3.981416 GCTTGCTTGTACCTTTAAGTTGC 59.019 43.478 0.00 0.00 0.00 4.17
1877 1891 4.261614 GCTTGCTTGTACCTTTAAGTTGCT 60.262 41.667 0.00 0.00 0.00 3.91
1878 1892 5.736207 GCTTGCTTGTACCTTTAAGTTGCTT 60.736 40.000 0.00 0.00 0.00 3.91
1879 1893 5.181690 TGCTTGTACCTTTAAGTTGCTTG 57.818 39.130 0.00 0.00 0.00 4.01
1880 1894 4.642885 TGCTTGTACCTTTAAGTTGCTTGT 59.357 37.500 0.00 0.00 0.00 3.16
1881 1895 5.823570 TGCTTGTACCTTTAAGTTGCTTGTA 59.176 36.000 0.00 0.00 0.00 2.41
1882 1896 6.140786 GCTTGTACCTTTAAGTTGCTTGTAC 58.859 40.000 0.00 0.00 0.00 2.90
1883 1897 6.622833 TTGTACCTTTAAGTTGCTTGTACC 57.377 37.500 0.00 0.00 0.00 3.34
1884 1898 5.932455 TGTACCTTTAAGTTGCTTGTACCT 58.068 37.500 0.00 0.00 0.00 3.08
1885 1899 6.358991 TGTACCTTTAAGTTGCTTGTACCTT 58.641 36.000 0.00 0.00 0.00 3.50
1886 1900 6.829811 TGTACCTTTAAGTTGCTTGTACCTTT 59.170 34.615 0.00 0.00 0.00 3.11
1887 1901 7.992033 TGTACCTTTAAGTTGCTTGTACCTTTA 59.008 33.333 0.00 0.00 0.00 1.85
1888 1902 7.885009 ACCTTTAAGTTGCTTGTACCTTTAA 57.115 32.000 0.00 0.00 0.00 1.52
1889 1903 7.937649 ACCTTTAAGTTGCTTGTACCTTTAAG 58.062 34.615 0.00 0.00 0.00 1.85
1896 1910 4.260334 GCTTGTACCTTTAAGCATCGTC 57.740 45.455 10.00 0.00 46.43 4.20
1897 1911 3.933332 GCTTGTACCTTTAAGCATCGTCT 59.067 43.478 10.00 0.00 46.43 4.18
1898 1912 4.033014 GCTTGTACCTTTAAGCATCGTCTC 59.967 45.833 10.00 0.00 46.43 3.36
1899 1913 4.119442 TGTACCTTTAAGCATCGTCTCC 57.881 45.455 0.00 0.00 0.00 3.71
1900 1914 3.512329 TGTACCTTTAAGCATCGTCTCCA 59.488 43.478 0.00 0.00 0.00 3.86
1901 1915 3.914426 ACCTTTAAGCATCGTCTCCAT 57.086 42.857 0.00 0.00 0.00 3.41
1902 1916 3.798202 ACCTTTAAGCATCGTCTCCATC 58.202 45.455 0.00 0.00 0.00 3.51
1903 1917 3.452627 ACCTTTAAGCATCGTCTCCATCT 59.547 43.478 0.00 0.00 0.00 2.90
1904 1918 3.806521 CCTTTAAGCATCGTCTCCATCTG 59.193 47.826 0.00 0.00 0.00 2.90
1905 1919 4.442052 CCTTTAAGCATCGTCTCCATCTGA 60.442 45.833 0.00 0.00 0.00 3.27
1906 1920 2.886862 AAGCATCGTCTCCATCTGAG 57.113 50.000 0.00 0.00 42.90 3.35
1907 1921 1.039068 AGCATCGTCTCCATCTGAGG 58.961 55.000 0.00 0.00 41.76 3.86
1908 1922 1.035923 GCATCGTCTCCATCTGAGGA 58.964 55.000 0.00 0.00 41.76 3.71
1909 1923 1.617850 GCATCGTCTCCATCTGAGGAT 59.382 52.381 0.00 0.00 41.76 3.24
1910 1924 2.036992 GCATCGTCTCCATCTGAGGATT 59.963 50.000 0.00 0.00 41.76 3.01
1911 1925 3.494048 GCATCGTCTCCATCTGAGGATTT 60.494 47.826 0.00 0.00 41.76 2.17
1912 1926 3.808466 TCGTCTCCATCTGAGGATTTG 57.192 47.619 0.00 0.00 41.76 2.32
1913 1927 2.159043 TCGTCTCCATCTGAGGATTTGC 60.159 50.000 0.00 0.00 41.76 3.68
1914 1928 2.570135 GTCTCCATCTGAGGATTTGCC 58.430 52.381 0.00 0.00 41.76 4.52
1915 1929 2.092753 GTCTCCATCTGAGGATTTGCCA 60.093 50.000 0.00 0.00 41.76 4.92
1916 1930 2.172082 TCTCCATCTGAGGATTTGCCAG 59.828 50.000 0.00 0.00 41.76 4.85
1930 1944 5.105351 GGATTTGCCAGGTTATGCTTTAAGT 60.105 40.000 0.00 0.00 36.34 2.24
1935 1949 3.509575 CCAGGTTATGCTTTAAGTTGCCA 59.490 43.478 0.00 0.00 0.00 4.92
1945 1959 5.868801 TGCTTTAAGTTGCCATTTTATCTGC 59.131 36.000 0.00 0.00 0.00 4.26
2000 2014 4.429108 GAGAAGACAGTCCTTATGAGCAC 58.571 47.826 0.00 0.00 0.00 4.40
2044 2058 4.042062 TCACACACTCCCAAAGATGATCTT 59.958 41.667 0.97 0.97 38.59 2.40
2106 2120 6.791867 TGGTAGTATGATGCAAGTACTTCT 57.208 37.500 4.77 0.00 31.58 2.85
2198 2221 3.071874 AGATCAGACGGATGCCAAAAA 57.928 42.857 0.00 0.00 36.00 1.94
2312 2335 4.616381 CGTCAACAAAATTGCATCGATTCA 59.384 37.500 0.00 0.00 0.00 2.57
2375 2398 9.679661 TGTCAGTGTATACATTATCCATTGTTT 57.320 29.630 9.18 0.00 0.00 2.83
2460 2484 5.732331 ATGATATTCCAGGACCTCCAAAA 57.268 39.130 0.00 0.00 38.89 2.44
2473 2497 5.297029 GGACCTCCAAAAGATAAGTATGTGC 59.703 44.000 0.00 0.00 35.64 4.57
2618 2642 5.758784 CGTATCCTTCTCTGGTAAATTTCCC 59.241 44.000 0.00 0.00 0.00 3.97
2633 2657 3.982576 TTTCCCGAGTTCTTTTTCAGC 57.017 42.857 0.00 0.00 0.00 4.26
2701 2725 9.120538 TCATAGTTTGAATGTTATAGGGAAAGC 57.879 33.333 0.00 0.00 0.00 3.51
2708 2732 3.626930 TGTTATAGGGAAAGCGGCAATT 58.373 40.909 1.45 0.00 0.00 2.32
2727 2751 5.567423 GCAATTGCCCTTCTGAACACTTAAT 60.567 40.000 20.06 0.00 34.31 1.40
2783 2807 4.693566 CGAAACAGTATTTGGGCTGAGTTA 59.306 41.667 0.00 0.00 36.62 2.24
3088 3116 2.857592 TACCGTTCATCTACTTCGCC 57.142 50.000 0.00 0.00 0.00 5.54
3351 3379 7.495606 TGTTGTCATCTGCCATAACATAACTAG 59.504 37.037 0.00 0.00 0.00 2.57
3409 3438 1.272807 GTAGGGTGCCAAGGACTACA 58.727 55.000 0.00 0.00 35.35 2.74
3508 5059 2.183478 TGCCACCAGATAACTGTGTG 57.817 50.000 11.93 11.93 42.05 3.82
3565 5116 4.678509 TGATTGGTCGACTTGTAATTGC 57.321 40.909 16.46 0.00 0.00 3.56
3604 5155 5.941647 TGTAAAATACTAGGAGTTTGGTGCC 59.058 40.000 10.65 0.00 0.00 5.01
3661 5212 4.648970 GAACTATTTTGCTCCAGCGTAAC 58.351 43.478 0.00 0.00 45.83 2.50
3664 5215 0.249953 TTTTGCTCCAGCGTAACGGA 60.250 50.000 0.00 0.00 45.83 4.69
3679 5230 0.966179 ACGGAAAGGAATGGCAAACC 59.034 50.000 0.00 0.00 0.00 3.27
3707 5258 4.532126 TGCATATTCGGAATGGTAGGAGAT 59.468 41.667 13.37 0.00 0.00 2.75
3741 5292 1.344114 AGGTTGGCGCAAATTTGTCAT 59.656 42.857 19.03 0.00 0.00 3.06
3823 5374 7.017551 AGGAAGCTTACCATGATTGTCCATATA 59.982 37.037 4.63 0.00 0.00 0.86
3892 5445 2.265367 TGATGACCCCTGCTGTTTCTA 58.735 47.619 0.00 0.00 0.00 2.10
3971 5527 5.300752 ACTACTGCATATGATGGCTAACAC 58.699 41.667 6.97 0.00 0.00 3.32
3998 5554 4.993705 ATTTCCACAAGTCCTAGTCCAA 57.006 40.909 0.00 0.00 0.00 3.53
4021 5577 6.425577 AGTGTTGTTTTAGCTTCGTGTAAA 57.574 33.333 0.00 0.00 0.00 2.01
4024 5580 7.278424 AGTGTTGTTTTAGCTTCGTGTAAACTA 59.722 33.333 0.00 0.00 31.71 2.24
4045 5601 7.510549 ACTATGACTTGTATTTTTGCACTGT 57.489 32.000 0.00 0.00 0.00 3.55
4046 5602 7.362662 ACTATGACTTGTATTTTTGCACTGTG 58.637 34.615 2.76 2.76 0.00 3.66
4053 5609 5.403246 TGTATTTTTGCACTGTGTTCGTTT 58.597 33.333 9.86 0.00 0.00 3.60
4054 5610 5.513495 TGTATTTTTGCACTGTGTTCGTTTC 59.487 36.000 9.86 0.00 0.00 2.78
4055 5611 3.840890 TTTTGCACTGTGTTCGTTTCT 57.159 38.095 9.86 0.00 0.00 2.52
4056 5612 2.823196 TTGCACTGTGTTCGTTTCTG 57.177 45.000 9.86 0.00 0.00 3.02
4057 5613 2.017138 TGCACTGTGTTCGTTTCTGA 57.983 45.000 9.86 0.00 0.00 3.27
4059 5615 2.351418 TGCACTGTGTTCGTTTCTGAAG 59.649 45.455 9.86 0.00 0.00 3.02
4060 5616 2.851008 GCACTGTGTTCGTTTCTGAAGC 60.851 50.000 9.86 0.00 0.00 3.86
4061 5617 2.351418 CACTGTGTTCGTTTCTGAAGCA 59.649 45.455 5.12 0.00 0.00 3.91
4075 5632 5.931441 TCTGAAGCAAGTTTAGCTCTTTC 57.069 39.130 0.00 0.00 42.53 2.62
4105 5662 4.766375 TGGGAAAATCTGTTCGGATCTAC 58.234 43.478 0.00 0.00 0.00 2.59
4106 5663 4.469945 TGGGAAAATCTGTTCGGATCTACT 59.530 41.667 0.00 0.00 0.00 2.57
4107 5664 5.051153 GGGAAAATCTGTTCGGATCTACTC 58.949 45.833 0.00 0.00 0.00 2.59
4108 5665 5.163395 GGGAAAATCTGTTCGGATCTACTCT 60.163 44.000 0.00 0.00 0.00 3.24
4109 5666 6.342111 GGAAAATCTGTTCGGATCTACTCTT 58.658 40.000 0.00 0.00 0.00 2.85
4110 5667 6.819146 GGAAAATCTGTTCGGATCTACTCTTT 59.181 38.462 0.00 0.00 0.00 2.52
4111 5668 7.201565 GGAAAATCTGTTCGGATCTACTCTTTG 60.202 40.741 0.00 0.00 0.00 2.77
4112 5669 5.923733 ATCTGTTCGGATCTACTCTTTGT 57.076 39.130 0.00 0.00 0.00 2.83
4113 5670 5.723672 TCTGTTCGGATCTACTCTTTGTT 57.276 39.130 0.00 0.00 0.00 2.83
4114 5671 6.097915 TCTGTTCGGATCTACTCTTTGTTT 57.902 37.500 0.00 0.00 0.00 2.83
4115 5672 6.522054 TCTGTTCGGATCTACTCTTTGTTTT 58.478 36.000 0.00 0.00 0.00 2.43
4116 5673 7.663827 TCTGTTCGGATCTACTCTTTGTTTTA 58.336 34.615 0.00 0.00 0.00 1.52
4117 5674 7.597743 TCTGTTCGGATCTACTCTTTGTTTTAC 59.402 37.037 0.00 0.00 0.00 2.01
4118 5675 7.211573 TGTTCGGATCTACTCTTTGTTTTACA 58.788 34.615 0.00 0.00 0.00 2.41
4119 5676 7.170320 TGTTCGGATCTACTCTTTGTTTTACAC 59.830 37.037 0.00 0.00 0.00 2.90
4120 5677 5.860182 TCGGATCTACTCTTTGTTTTACACG 59.140 40.000 0.00 0.00 0.00 4.49
4121 5678 5.860182 CGGATCTACTCTTTGTTTTACACGA 59.140 40.000 0.00 0.00 0.00 4.35
4122 5679 6.364165 CGGATCTACTCTTTGTTTTACACGAA 59.636 38.462 0.00 0.00 0.00 3.85
4123 5680 7.508134 GGATCTACTCTTTGTTTTACACGAAC 58.492 38.462 0.00 0.00 0.00 3.95
4124 5681 6.500775 TCTACTCTTTGTTTTACACGAACG 57.499 37.500 0.00 0.00 0.00 3.95
4127 5684 3.930618 TCTTTGTTTTACACGAACGCTG 58.069 40.909 0.00 0.00 0.00 5.18
4186 5746 0.663568 CGGGCGATCGTGATTCCTAC 60.664 60.000 17.81 0.00 0.00 3.18
4226 5787 2.519780 GATCCTCCTCTCCGCCGT 60.520 66.667 0.00 0.00 0.00 5.68
4295 5874 2.920912 GGGGTGTCCTCGGTCACA 60.921 66.667 13.76 0.00 36.24 3.58
4309 5889 0.109039 GTCACAGCGGAGTCTCCTTC 60.109 60.000 17.00 8.41 33.30 3.46
4314 5900 0.894184 AGCGGAGTCTCCTTCACGAA 60.894 55.000 17.00 0.00 33.30 3.85
4341 5927 2.322081 CGACGATGTTTTGGGCGGT 61.322 57.895 0.00 0.00 0.00 5.68
4346 5932 0.033366 GATGTTTTGGGCGGTTGCTT 59.967 50.000 0.00 0.00 42.25 3.91
4360 5946 2.597510 GCTTGGTTCCGGCAGGTT 60.598 61.111 1.81 0.00 39.05 3.50
4471 6100 2.108566 CAGATCTGGCGCCTGGAG 59.891 66.667 30.13 18.89 0.00 3.86
4472 6101 3.859414 AGATCTGGCGCCTGGAGC 61.859 66.667 30.13 26.45 38.52 4.70
4547 6176 4.003788 CGTCGGCTTGGTGGAGGT 62.004 66.667 0.00 0.00 0.00 3.85
4609 6238 1.714794 ACTTTCTGCTTGATCGGTCG 58.285 50.000 0.00 0.00 0.00 4.79
4626 6255 2.893398 GTCCTCGATCTGGCCGTT 59.107 61.111 0.00 0.00 0.00 4.44
4636 6265 2.938823 CTGGCCGTTGACGTGTTCG 61.939 63.158 0.00 0.00 43.34 3.95
4637 6266 2.659244 GGCCGTTGACGTGTTCGA 60.659 61.111 0.00 0.00 40.62 3.71
4662 6291 4.161295 TGCCGGAGATCTTGCCCG 62.161 66.667 5.05 13.11 42.64 6.13
4668 6297 0.761802 GGAGATCTTGCCCGAGGATT 59.238 55.000 0.00 0.00 0.00 3.01
4670 6299 1.691434 GAGATCTTGCCCGAGGATTCT 59.309 52.381 0.00 0.00 0.00 2.40
4671 6300 1.415659 AGATCTTGCCCGAGGATTCTG 59.584 52.381 0.00 0.00 0.00 3.02
4672 6301 0.179034 ATCTTGCCCGAGGATTCTGC 60.179 55.000 0.00 0.00 0.00 4.26
4675 6305 0.836606 TTGCCCGAGGATTCTGCATA 59.163 50.000 0.00 0.00 31.58 3.14
4696 6326 1.067354 GGACAGTATCCGGTCGTTTGT 60.067 52.381 0.00 0.90 37.88 2.83
4702 6332 0.601841 ATCCGGTCGTTTGTGTCCAC 60.602 55.000 0.00 0.00 0.00 4.02
4712 6342 2.472695 TTGTGTCCACATCAGCCTAC 57.527 50.000 0.20 0.00 41.52 3.18
4747 6388 4.379813 CGAAGCTCTGCCATTTGTTTACAT 60.380 41.667 0.00 0.00 0.00 2.29
4748 6389 5.473039 GAAGCTCTGCCATTTGTTTACATT 58.527 37.500 0.00 0.00 0.00 2.71
4821 6463 4.019858 AGTCTTGATGTTGAGATCGGAGA 58.980 43.478 0.00 0.00 45.75 3.71
4829 6471 6.266330 TGATGTTGAGATCGGAGAATCAGTAT 59.734 38.462 0.00 0.00 43.58 2.12
4835 6477 2.558795 ATCGGAGAATCAGTATGACGGG 59.441 50.000 0.00 0.00 46.04 5.28
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.699954 CAGAAGGTACGGCTGTGAAAT 58.300 47.619 8.92 0.00 31.62 2.17
1 2 1.876416 GCAGAAGGTACGGCTGTGAAA 60.876 52.381 8.92 0.00 36.89 2.69
2 3 0.320421 GCAGAAGGTACGGCTGTGAA 60.320 55.000 8.92 0.00 36.89 3.18
3 4 1.292223 GCAGAAGGTACGGCTGTGA 59.708 57.895 8.92 0.00 36.89 3.58
4 5 1.741770 GGCAGAAGGTACGGCTGTG 60.742 63.158 8.92 0.00 36.89 3.66
5 6 1.913762 AGGCAGAAGGTACGGCTGT 60.914 57.895 2.42 2.42 36.89 4.40
6 7 1.448540 CAGGCAGAAGGTACGGCTG 60.449 63.158 6.83 6.83 45.30 4.85
7 8 2.982130 CAGGCAGAAGGTACGGCT 59.018 61.111 0.00 0.00 35.68 5.52
8 9 1.956629 TAGCAGGCAGAAGGTACGGC 61.957 60.000 0.00 0.00 0.00 5.68
9 10 0.103208 CTAGCAGGCAGAAGGTACGG 59.897 60.000 0.00 0.00 0.00 4.02
10 11 0.818296 ACTAGCAGGCAGAAGGTACG 59.182 55.000 0.00 0.00 0.00 3.67
11 12 3.025262 AGTACTAGCAGGCAGAAGGTAC 58.975 50.000 0.00 0.00 0.00 3.34
12 13 3.053544 AGAGTACTAGCAGGCAGAAGGTA 60.054 47.826 0.00 0.00 0.00 3.08
13 14 2.104170 GAGTACTAGCAGGCAGAAGGT 58.896 52.381 0.00 0.00 0.00 3.50
14 15 2.360801 GAGAGTACTAGCAGGCAGAAGG 59.639 54.545 0.00 0.00 0.00 3.46
15 16 3.287222 AGAGAGTACTAGCAGGCAGAAG 58.713 50.000 0.00 0.00 0.00 2.85
16 17 3.283751 GAGAGAGTACTAGCAGGCAGAA 58.716 50.000 0.00 0.00 0.00 3.02
17 18 2.422235 GGAGAGAGTACTAGCAGGCAGA 60.422 54.545 0.00 0.00 0.00 4.26
18 19 1.953686 GGAGAGAGTACTAGCAGGCAG 59.046 57.143 0.00 0.00 0.00 4.85
19 20 1.747552 CGGAGAGAGTACTAGCAGGCA 60.748 57.143 0.00 0.00 0.00 4.75
20 21 0.948678 CGGAGAGAGTACTAGCAGGC 59.051 60.000 0.00 0.00 0.00 4.85
21 22 2.335316 ACGGAGAGAGTACTAGCAGG 57.665 55.000 0.00 0.00 0.00 4.85
22 23 4.705337 AAAACGGAGAGAGTACTAGCAG 57.295 45.455 0.00 0.00 0.00 4.24
23 24 6.770746 ATAAAAACGGAGAGAGTACTAGCA 57.229 37.500 0.00 0.00 0.00 3.49
24 25 9.235537 CTAAATAAAAACGGAGAGAGTACTAGC 57.764 37.037 0.00 0.00 0.00 3.42
25 26 9.235537 GCTAAATAAAAACGGAGAGAGTACTAG 57.764 37.037 0.00 0.00 0.00 2.57
26 27 8.193438 GGCTAAATAAAAACGGAGAGAGTACTA 58.807 37.037 0.00 0.00 0.00 1.82
27 28 7.040494 GGCTAAATAAAAACGGAGAGAGTACT 58.960 38.462 0.00 0.00 0.00 2.73
28 29 6.257411 GGGCTAAATAAAAACGGAGAGAGTAC 59.743 42.308 0.00 0.00 0.00 2.73
29 30 6.070653 TGGGCTAAATAAAAACGGAGAGAGTA 60.071 38.462 0.00 0.00 0.00 2.59
30 31 5.183969 GGGCTAAATAAAAACGGAGAGAGT 58.816 41.667 0.00 0.00 0.00 3.24
31 32 5.183228 TGGGCTAAATAAAAACGGAGAGAG 58.817 41.667 0.00 0.00 0.00 3.20
32 33 5.168647 TGGGCTAAATAAAAACGGAGAGA 57.831 39.130 0.00 0.00 0.00 3.10
33 34 5.357032 ACATGGGCTAAATAAAAACGGAGAG 59.643 40.000 0.00 0.00 0.00 3.20
34 35 5.258051 ACATGGGCTAAATAAAAACGGAGA 58.742 37.500 0.00 0.00 0.00 3.71
35 36 5.576447 ACATGGGCTAAATAAAAACGGAG 57.424 39.130 0.00 0.00 0.00 4.63
36 37 7.648039 AATACATGGGCTAAATAAAAACGGA 57.352 32.000 0.00 0.00 0.00 4.69
37 38 8.079809 CCTAATACATGGGCTAAATAAAAACGG 58.920 37.037 0.00 0.00 0.00 4.44
38 39 8.626526 ACCTAATACATGGGCTAAATAAAAACG 58.373 33.333 0.00 0.00 0.00 3.60
42 43 8.919145 CCAAACCTAATACATGGGCTAAATAAA 58.081 33.333 0.00 0.00 0.00 1.40
43 44 8.062536 ACCAAACCTAATACATGGGCTAAATAA 58.937 33.333 0.00 0.00 35.44 1.40
44 45 7.588169 ACCAAACCTAATACATGGGCTAAATA 58.412 34.615 0.00 0.00 35.44 1.40
45 46 6.440354 ACCAAACCTAATACATGGGCTAAAT 58.560 36.000 0.00 0.00 35.44 1.40
46 47 5.833340 ACCAAACCTAATACATGGGCTAAA 58.167 37.500 0.00 0.00 35.44 1.85
47 48 5.044772 TGACCAAACCTAATACATGGGCTAA 60.045 40.000 0.00 0.00 40.01 3.09
48 49 4.475381 TGACCAAACCTAATACATGGGCTA 59.525 41.667 0.00 0.00 40.01 3.93
49 50 3.268334 TGACCAAACCTAATACATGGGCT 59.732 43.478 0.00 0.00 40.01 5.19
50 51 3.626930 TGACCAAACCTAATACATGGGC 58.373 45.455 0.00 0.00 39.74 5.36
51 52 5.714806 ACTTTGACCAAACCTAATACATGGG 59.285 40.000 0.00 0.00 35.44 4.00
52 53 6.432783 TGACTTTGACCAAACCTAATACATGG 59.567 38.462 0.00 0.00 37.19 3.66
53 54 7.447374 TGACTTTGACCAAACCTAATACATG 57.553 36.000 0.00 0.00 0.00 3.21
54 55 7.309194 GCTTGACTTTGACCAAACCTAATACAT 60.309 37.037 0.00 0.00 0.00 2.29
55 56 6.016610 GCTTGACTTTGACCAAACCTAATACA 60.017 38.462 0.00 0.00 0.00 2.29
56 57 6.206829 AGCTTGACTTTGACCAAACCTAATAC 59.793 38.462 0.00 0.00 0.00 1.89
57 58 6.303839 AGCTTGACTTTGACCAAACCTAATA 58.696 36.000 0.00 0.00 0.00 0.98
58 59 5.140454 AGCTTGACTTTGACCAAACCTAAT 58.860 37.500 0.00 0.00 0.00 1.73
59 60 4.532834 AGCTTGACTTTGACCAAACCTAA 58.467 39.130 0.00 0.00 0.00 2.69
60 61 4.164843 AGCTTGACTTTGACCAAACCTA 57.835 40.909 0.00 0.00 0.00 3.08
61 62 3.018423 AGCTTGACTTTGACCAAACCT 57.982 42.857 0.00 0.00 0.00 3.50
62 63 3.801114 AAGCTTGACTTTGACCAAACC 57.199 42.857 0.00 0.00 33.71 3.27
134 135 9.647797 TGTGAACGTACACTCAATAATTAATCT 57.352 29.630 0.00 0.00 40.87 2.40
137 138 9.425577 TGATGTGAACGTACACTCAATAATTAA 57.574 29.630 0.00 0.00 40.87 1.40
138 139 8.989653 TGATGTGAACGTACACTCAATAATTA 57.010 30.769 0.00 0.00 40.87 1.40
139 140 7.899178 TGATGTGAACGTACACTCAATAATT 57.101 32.000 0.00 0.00 40.87 1.40
140 141 9.764363 ATATGATGTGAACGTACACTCAATAAT 57.236 29.630 0.00 0.00 40.87 1.28
143 144 9.249457 CTTATATGATGTGAACGTACACTCAAT 57.751 33.333 0.00 0.00 40.87 2.57
144 145 8.248253 ACTTATATGATGTGAACGTACACTCAA 58.752 33.333 0.00 0.00 40.87 3.02
145 146 7.768240 ACTTATATGATGTGAACGTACACTCA 58.232 34.615 0.00 0.00 40.87 3.41
146 147 8.630278 AACTTATATGATGTGAACGTACACTC 57.370 34.615 0.00 0.00 40.87 3.51
147 148 8.869897 CAAACTTATATGATGTGAACGTACACT 58.130 33.333 0.00 0.00 40.87 3.55
148 149 8.653338 ACAAACTTATATGATGTGAACGTACAC 58.347 33.333 0.00 0.00 40.68 2.90
149 150 8.766000 ACAAACTTATATGATGTGAACGTACA 57.234 30.769 0.00 0.00 34.63 2.90
320 321 2.539302 TGTCACCTCTCATGTGATGGA 58.461 47.619 15.63 5.21 43.98 3.41
371 372 1.818642 AAACCAGACAGCAGAGATGC 58.181 50.000 0.00 0.00 0.00 3.91
381 382 0.555769 AGAGGGGCAAAAACCAGACA 59.444 50.000 0.00 0.00 0.00 3.41
476 477 1.033574 CGGAGGCGGAGAAGAATAGT 58.966 55.000 0.00 0.00 0.00 2.12
477 478 1.033574 ACGGAGGCGGAGAAGAATAG 58.966 55.000 0.00 0.00 0.00 1.73
484 485 2.348888 GGAGAAACGGAGGCGGAGA 61.349 63.158 0.00 0.00 0.00 3.71
562 570 0.980231 AGCAGTCCAGTCCAGATCCC 60.980 60.000 0.00 0.00 0.00 3.85
599 607 3.065371 GGTCGAATTAACCTGCAATCCAG 59.935 47.826 0.00 0.00 41.41 3.86
600 608 3.013921 GGTCGAATTAACCTGCAATCCA 58.986 45.455 0.00 0.00 33.78 3.41
601 609 3.279434 AGGTCGAATTAACCTGCAATCC 58.721 45.455 10.48 0.00 45.50 3.01
675 684 2.539688 GCAACAAAACAAGCCTGCTAAC 59.460 45.455 0.00 0.00 0.00 2.34
711 720 1.272985 CCTCCAGAGTCCAGACCTTCT 60.273 57.143 0.00 0.00 0.00 2.85
716 725 1.859302 ATGTCCTCCAGAGTCCAGAC 58.141 55.000 0.00 0.00 0.00 3.51
723 732 2.191400 TCCCAGAAATGTCCTCCAGAG 58.809 52.381 0.00 0.00 0.00 3.35
724 733 2.342406 TCCCAGAAATGTCCTCCAGA 57.658 50.000 0.00 0.00 0.00 3.86
725 734 3.659183 AATCCCAGAAATGTCCTCCAG 57.341 47.619 0.00 0.00 0.00 3.86
726 735 3.309121 GGAAATCCCAGAAATGTCCTCCA 60.309 47.826 0.00 0.00 34.14 3.86
727 736 3.291584 GGAAATCCCAGAAATGTCCTCC 58.708 50.000 0.00 0.00 34.14 4.30
764 773 9.231297 ACAATTTGCGGCAAGAGTAATATATAT 57.769 29.630 15.78 0.00 0.00 0.86
766 775 7.510549 ACAATTTGCGGCAAGAGTAATATAT 57.489 32.000 15.78 0.23 0.00 0.86
771 780 6.765989 AGATATACAATTTGCGGCAAGAGTAA 59.234 34.615 15.78 0.61 0.00 2.24
772 781 6.288294 AGATATACAATTTGCGGCAAGAGTA 58.712 36.000 15.78 17.84 0.00 2.59
773 782 5.126067 AGATATACAATTTGCGGCAAGAGT 58.874 37.500 15.78 16.41 0.00 3.24
774 783 5.237127 TGAGATATACAATTTGCGGCAAGAG 59.763 40.000 15.78 11.73 0.00 2.85
786 795 9.642343 TGGTCACTACTACTTGAGATATACAAT 57.358 33.333 0.00 0.00 0.00 2.71
794 803 4.001652 CGAGTGGTCACTACTACTTGAGA 58.998 47.826 3.35 0.00 46.39 3.27
804 813 5.518848 TGTTTTTACTCGAGTGGTCACTA 57.481 39.130 28.12 2.72 42.66 2.74
853 862 8.701895 TCCTCTACACCGATTCTAACAAAATAT 58.298 33.333 0.00 0.00 0.00 1.28
856 865 6.349243 TCCTCTACACCGATTCTAACAAAA 57.651 37.500 0.00 0.00 0.00 2.44
878 887 5.986501 ATTCAGAACGGAGGGAGTATATC 57.013 43.478 0.00 0.00 0.00 1.63
880 889 6.371278 AGTAATTCAGAACGGAGGGAGTATA 58.629 40.000 0.00 0.00 0.00 1.47
882 891 4.607239 AGTAATTCAGAACGGAGGGAGTA 58.393 43.478 0.00 0.00 0.00 2.59
884 893 4.184629 CAAGTAATTCAGAACGGAGGGAG 58.815 47.826 0.00 0.00 0.00 4.30
885 894 3.581332 ACAAGTAATTCAGAACGGAGGGA 59.419 43.478 0.00 0.00 0.00 4.20
886 895 3.933332 GACAAGTAATTCAGAACGGAGGG 59.067 47.826 0.00 0.00 0.00 4.30
887 896 3.612860 CGACAAGTAATTCAGAACGGAGG 59.387 47.826 0.00 0.00 0.00 4.30
888 897 3.060895 GCGACAAGTAATTCAGAACGGAG 59.939 47.826 0.00 0.00 0.00 4.63
889 898 2.991190 GCGACAAGTAATTCAGAACGGA 59.009 45.455 0.00 0.00 0.00 4.69
890 899 2.734606 TGCGACAAGTAATTCAGAACGG 59.265 45.455 0.00 0.00 0.00 4.44
891 900 3.718036 CGTGCGACAAGTAATTCAGAACG 60.718 47.826 0.00 0.00 0.00 3.95
892 901 3.183775 ACGTGCGACAAGTAATTCAGAAC 59.816 43.478 0.00 0.00 0.00 3.01
893 902 3.386486 ACGTGCGACAAGTAATTCAGAA 58.614 40.909 0.00 0.00 0.00 3.02
894 903 3.021269 ACGTGCGACAAGTAATTCAGA 57.979 42.857 0.00 0.00 0.00 3.27
895 904 4.259810 CCATACGTGCGACAAGTAATTCAG 60.260 45.833 0.00 0.88 32.82 3.02
896 905 3.615056 CCATACGTGCGACAAGTAATTCA 59.385 43.478 0.00 0.00 32.82 2.57
897 906 3.861113 TCCATACGTGCGACAAGTAATTC 59.139 43.478 0.00 0.00 32.82 2.17
898 907 3.852286 TCCATACGTGCGACAAGTAATT 58.148 40.909 0.00 0.00 32.82 1.40
899 908 3.513680 TCCATACGTGCGACAAGTAAT 57.486 42.857 0.00 0.00 32.82 1.89
900 909 3.183754 CATCCATACGTGCGACAAGTAA 58.816 45.455 0.00 0.00 32.82 2.24
901 910 2.164827 ACATCCATACGTGCGACAAGTA 59.835 45.455 0.00 7.72 33.49 2.24
902 911 1.067142 ACATCCATACGTGCGACAAGT 60.067 47.619 0.00 0.00 0.00 3.16
903 912 1.640428 ACATCCATACGTGCGACAAG 58.360 50.000 0.00 0.00 0.00 3.16
904 913 2.943449 TACATCCATACGTGCGACAA 57.057 45.000 0.00 0.00 0.00 3.18
905 914 2.621526 AGATACATCCATACGTGCGACA 59.378 45.455 0.00 0.00 0.00 4.35
906 915 3.284323 AGATACATCCATACGTGCGAC 57.716 47.619 0.00 0.00 0.00 5.19
907 916 4.320870 TCTAGATACATCCATACGTGCGA 58.679 43.478 0.00 0.00 0.00 5.10
908 917 4.680171 TCTAGATACATCCATACGTGCG 57.320 45.455 0.00 0.00 0.00 5.34
909 918 5.955488 ACATCTAGATACATCCATACGTGC 58.045 41.667 4.54 0.00 0.00 5.34
937 946 9.503399 TCGCTGAAATAGATGTATCTAGAACTA 57.497 33.333 0.00 0.00 42.20 2.24
938 947 8.293867 GTCGCTGAAATAGATGTATCTAGAACT 58.706 37.037 0.00 0.00 42.20 3.01
939 948 7.269511 CGTCGCTGAAATAGATGTATCTAGAAC 59.730 40.741 0.00 0.00 42.20 3.01
940 949 7.172703 TCGTCGCTGAAATAGATGTATCTAGAA 59.827 37.037 0.00 0.00 42.20 2.10
941 950 6.649557 TCGTCGCTGAAATAGATGTATCTAGA 59.350 38.462 7.57 0.00 42.20 2.43
942 951 6.832804 TCGTCGCTGAAATAGATGTATCTAG 58.167 40.000 7.57 0.00 42.20 2.43
943 952 6.427242 ACTCGTCGCTGAAATAGATGTATCTA 59.573 38.462 4.22 4.22 43.00 1.98
944 953 5.239744 ACTCGTCGCTGAAATAGATGTATCT 59.760 40.000 0.00 0.00 40.86 1.98
945 954 5.453648 ACTCGTCGCTGAAATAGATGTATC 58.546 41.667 0.00 0.00 0.00 2.24
946 955 5.440234 ACTCGTCGCTGAAATAGATGTAT 57.560 39.130 0.00 0.00 0.00 2.29
947 956 4.895224 ACTCGTCGCTGAAATAGATGTA 57.105 40.909 0.00 0.00 0.00 2.29
948 957 3.784701 ACTCGTCGCTGAAATAGATGT 57.215 42.857 0.00 0.00 0.00 3.06
949 958 6.755461 AATTACTCGTCGCTGAAATAGATG 57.245 37.500 0.00 0.00 0.00 2.90
950 959 6.201044 CCAAATTACTCGTCGCTGAAATAGAT 59.799 38.462 0.00 0.00 0.00 1.98
951 960 5.518847 CCAAATTACTCGTCGCTGAAATAGA 59.481 40.000 0.00 0.00 0.00 1.98
952 961 5.518847 TCCAAATTACTCGTCGCTGAAATAG 59.481 40.000 0.00 0.00 0.00 1.73
953 962 5.412640 TCCAAATTACTCGTCGCTGAAATA 58.587 37.500 0.00 0.00 0.00 1.40
954 963 4.250464 TCCAAATTACTCGTCGCTGAAAT 58.750 39.130 0.00 0.00 0.00 2.17
955 964 3.655486 TCCAAATTACTCGTCGCTGAAA 58.345 40.909 0.00 0.00 0.00 2.69
956 965 3.306917 TCCAAATTACTCGTCGCTGAA 57.693 42.857 0.00 0.00 0.00 3.02
957 966 2.991190 GTTCCAAATTACTCGTCGCTGA 59.009 45.455 0.00 0.00 0.00 4.26
958 967 2.222508 CGTTCCAAATTACTCGTCGCTG 60.223 50.000 0.00 0.00 0.00 5.18
959 968 1.990563 CGTTCCAAATTACTCGTCGCT 59.009 47.619 0.00 0.00 0.00 4.93
960 969 1.060122 CCGTTCCAAATTACTCGTCGC 59.940 52.381 0.00 0.00 0.00 5.19
961 970 2.597305 CTCCGTTCCAAATTACTCGTCG 59.403 50.000 0.00 0.00 0.00 5.12
962 971 2.928116 CCTCCGTTCCAAATTACTCGTC 59.072 50.000 0.00 0.00 0.00 4.20
963 972 2.354403 CCCTCCGTTCCAAATTACTCGT 60.354 50.000 0.00 0.00 0.00 4.18
964 973 2.093869 TCCCTCCGTTCCAAATTACTCG 60.094 50.000 0.00 0.00 0.00 4.18
965 974 3.055312 ACTCCCTCCGTTCCAAATTACTC 60.055 47.826 0.00 0.00 0.00 2.59
966 975 2.910977 ACTCCCTCCGTTCCAAATTACT 59.089 45.455 0.00 0.00 0.00 2.24
967 976 3.345508 ACTCCCTCCGTTCCAAATTAC 57.654 47.619 0.00 0.00 0.00 1.89
968 977 4.355549 TCTACTCCCTCCGTTCCAAATTA 58.644 43.478 0.00 0.00 0.00 1.40
969 978 3.178865 TCTACTCCCTCCGTTCCAAATT 58.821 45.455 0.00 0.00 0.00 1.82
970 979 2.829023 TCTACTCCCTCCGTTCCAAAT 58.171 47.619 0.00 0.00 0.00 2.32
971 980 2.314071 TCTACTCCCTCCGTTCCAAA 57.686 50.000 0.00 0.00 0.00 3.28
972 981 2.176889 CTTCTACTCCCTCCGTTCCAA 58.823 52.381 0.00 0.00 0.00 3.53
973 982 1.848652 CTTCTACTCCCTCCGTTCCA 58.151 55.000 0.00 0.00 0.00 3.53
974 983 0.460722 GCTTCTACTCCCTCCGTTCC 59.539 60.000 0.00 0.00 0.00 3.62
975 984 1.135333 CAGCTTCTACTCCCTCCGTTC 59.865 57.143 0.00 0.00 0.00 3.95
976 985 1.187087 CAGCTTCTACTCCCTCCGTT 58.813 55.000 0.00 0.00 0.00 4.44
977 986 0.684805 CCAGCTTCTACTCCCTCCGT 60.685 60.000 0.00 0.00 0.00 4.69
978 987 0.395862 TCCAGCTTCTACTCCCTCCG 60.396 60.000 0.00 0.00 0.00 4.63
979 988 1.760029 CTTCCAGCTTCTACTCCCTCC 59.240 57.143 0.00 0.00 0.00 4.30
980 989 2.741145 TCTTCCAGCTTCTACTCCCTC 58.259 52.381 0.00 0.00 0.00 4.30
981 990 2.930109 TCTTCCAGCTTCTACTCCCT 57.070 50.000 0.00 0.00 0.00 4.20
982 991 3.034635 TCATCTTCCAGCTTCTACTCCC 58.965 50.000 0.00 0.00 0.00 4.30
983 992 4.744795 TTCATCTTCCAGCTTCTACTCC 57.255 45.455 0.00 0.00 0.00 3.85
984 993 7.622893 ATTTTTCATCTTCCAGCTTCTACTC 57.377 36.000 0.00 0.00 0.00 2.59
985 994 7.887495 AGAATTTTTCATCTTCCAGCTTCTACT 59.113 33.333 0.00 0.00 0.00 2.57
986 995 8.049655 AGAATTTTTCATCTTCCAGCTTCTAC 57.950 34.615 0.00 0.00 0.00 2.59
997 1006 4.564199 GCCCTGGCAAGAATTTTTCATCTT 60.564 41.667 2.58 0.00 41.49 2.40
1075 1084 4.207841 GCAATGTCTTGAACTTTTGCTCAC 59.792 41.667 0.00 0.00 40.99 3.51
1107 1116 5.874810 TGTCATATTACTTGGAACAGAGCAC 59.125 40.000 0.00 0.00 42.39 4.40
1122 1131 8.046708 ACAAAGAGGCACTACAATGTCATATTA 58.953 33.333 0.00 0.00 41.55 0.98
1127 1136 4.085357 ACAAAGAGGCACTACAATGTCA 57.915 40.909 0.00 0.00 41.55 3.58
1135 1144 4.365514 TGATCCAAACAAAGAGGCACTA 57.634 40.909 0.00 0.00 41.55 2.74
1212 1223 9.643693 CAAGTTAAAGATGATTATTTGCCTTGT 57.356 29.630 0.00 0.00 30.71 3.16
1213 1224 9.643693 ACAAGTTAAAGATGATTATTTGCCTTG 57.356 29.630 0.00 0.00 35.63 3.61
1442 1453 4.093998 GTGCTCAGTAACTCCAACATCATG 59.906 45.833 0.00 0.00 0.00 3.07
1578 1589 5.063204 CACAACCACTAGAATCAAAGACCA 58.937 41.667 0.00 0.00 0.00 4.02
1609 1620 1.818674 CCTATGCCAAAACAGGACACC 59.181 52.381 0.00 0.00 0.00 4.16
1649 1663 5.545658 TCTGTAGAATTTGCGATTGGTTC 57.454 39.130 0.00 0.00 0.00 3.62
1650 1664 5.957842 TTCTGTAGAATTTGCGATTGGTT 57.042 34.783 0.00 0.00 0.00 3.67
1651 1665 5.957842 TTTCTGTAGAATTTGCGATTGGT 57.042 34.783 0.00 0.00 33.54 3.67
1658 1672 6.259550 ACCTGACATTTCTGTAGAATTTGC 57.740 37.500 0.00 0.00 35.14 3.68
1681 1695 4.818005 TGAGTATAACGATCGCTGGAACTA 59.182 41.667 16.60 0.00 0.00 2.24
1697 1711 4.274978 TGACCCATTGACGAGTGAGTATA 58.725 43.478 0.00 0.00 0.00 1.47
1833 1847 3.366374 GCTGGCAAGCTTAAAGGTACAAG 60.366 47.826 5.60 0.00 46.60 3.16
1834 1848 2.556622 GCTGGCAAGCTTAAAGGTACAA 59.443 45.455 5.60 0.00 46.60 2.41
1835 1849 2.159382 GCTGGCAAGCTTAAAGGTACA 58.841 47.619 5.60 0.00 46.60 2.90
1836 1850 2.921634 GCTGGCAAGCTTAAAGGTAC 57.078 50.000 5.60 0.00 46.60 3.34
1847 1861 0.242017 GGTACAAGCAAGCTGGCAAG 59.758 55.000 17.28 9.65 35.83 4.01
1848 1862 0.178992 AGGTACAAGCAAGCTGGCAA 60.179 50.000 17.28 0.00 35.83 4.52
1849 1863 0.178992 AAGGTACAAGCAAGCTGGCA 60.179 50.000 17.28 0.00 35.83 4.92
1850 1864 0.961753 AAAGGTACAAGCAAGCTGGC 59.038 50.000 4.37 4.37 0.00 4.85
1851 1865 3.821033 ACTTAAAGGTACAAGCAAGCTGG 59.179 43.478 0.00 0.00 0.00 4.85
1852 1866 5.215160 CAACTTAAAGGTACAAGCAAGCTG 58.785 41.667 0.00 0.00 0.00 4.24
1853 1867 4.261614 GCAACTTAAAGGTACAAGCAAGCT 60.262 41.667 0.00 0.00 0.00 3.74
1854 1868 3.981416 GCAACTTAAAGGTACAAGCAAGC 59.019 43.478 0.00 0.00 0.00 4.01
1855 1869 5.438761 AGCAACTTAAAGGTACAAGCAAG 57.561 39.130 0.00 0.00 0.00 4.01
1856 1870 5.126384 ACAAGCAACTTAAAGGTACAAGCAA 59.874 36.000 0.00 0.00 0.00 3.91
1857 1871 4.642885 ACAAGCAACTTAAAGGTACAAGCA 59.357 37.500 0.00 0.00 0.00 3.91
1858 1872 5.183014 ACAAGCAACTTAAAGGTACAAGC 57.817 39.130 0.00 0.00 0.00 4.01
1859 1873 6.485648 AGGTACAAGCAACTTAAAGGTACAAG 59.514 38.462 0.00 0.00 33.22 3.16
1860 1874 6.358991 AGGTACAAGCAACTTAAAGGTACAA 58.641 36.000 0.00 0.00 33.22 2.41
1861 1875 5.932455 AGGTACAAGCAACTTAAAGGTACA 58.068 37.500 0.00 0.00 33.22 2.90
1862 1876 6.872628 AAGGTACAAGCAACTTAAAGGTAC 57.127 37.500 0.00 0.00 0.00 3.34
1863 1877 8.977267 TTAAAGGTACAAGCAACTTAAAGGTA 57.023 30.769 0.00 0.00 0.00 3.08
1864 1878 7.469594 GCTTAAAGGTACAAGCAACTTAAAGGT 60.470 37.037 10.00 0.00 45.20 3.50
1865 1879 6.861572 GCTTAAAGGTACAAGCAACTTAAAGG 59.138 38.462 10.00 0.00 45.20 3.11
1866 1880 7.853377 GCTTAAAGGTACAAGCAACTTAAAG 57.147 36.000 10.00 0.00 45.20 1.85
1875 1889 3.933332 AGACGATGCTTAAAGGTACAAGC 59.067 43.478 8.35 8.35 45.90 4.01
1876 1890 4.567159 GGAGACGATGCTTAAAGGTACAAG 59.433 45.833 0.00 0.00 0.00 3.16
1877 1891 4.020928 TGGAGACGATGCTTAAAGGTACAA 60.021 41.667 0.00 0.00 0.00 2.41
1878 1892 3.512329 TGGAGACGATGCTTAAAGGTACA 59.488 43.478 0.00 0.00 0.00 2.90
1879 1893 4.119442 TGGAGACGATGCTTAAAGGTAC 57.881 45.455 0.00 0.00 0.00 3.34
1880 1894 4.649674 AGATGGAGACGATGCTTAAAGGTA 59.350 41.667 0.00 0.00 0.00 3.08
1881 1895 3.452627 AGATGGAGACGATGCTTAAAGGT 59.547 43.478 0.00 0.00 0.00 3.50
1882 1896 3.806521 CAGATGGAGACGATGCTTAAAGG 59.193 47.826 0.00 0.00 0.00 3.11
1883 1897 4.686972 TCAGATGGAGACGATGCTTAAAG 58.313 43.478 0.00 0.00 0.00 1.85
1884 1898 4.736126 TCAGATGGAGACGATGCTTAAA 57.264 40.909 0.00 0.00 0.00 1.52
1896 1910 2.573369 CTGGCAAATCCTCAGATGGAG 58.427 52.381 0.00 0.00 43.65 3.86
1897 1911 1.213678 CCTGGCAAATCCTCAGATGGA 59.786 52.381 0.00 0.00 40.82 3.41
1898 1912 1.064166 ACCTGGCAAATCCTCAGATGG 60.064 52.381 0.00 0.00 35.26 3.51
1899 1913 2.431954 ACCTGGCAAATCCTCAGATG 57.568 50.000 0.00 0.00 35.26 2.90
1900 1914 4.467769 CATAACCTGGCAAATCCTCAGAT 58.532 43.478 0.00 0.00 35.26 2.90
1901 1915 3.889815 CATAACCTGGCAAATCCTCAGA 58.110 45.455 0.00 0.00 35.26 3.27
1902 1916 2.360165 GCATAACCTGGCAAATCCTCAG 59.640 50.000 0.00 0.00 35.26 3.35
1903 1917 2.025037 AGCATAACCTGGCAAATCCTCA 60.025 45.455 0.00 0.00 35.26 3.86
1904 1918 2.659428 AGCATAACCTGGCAAATCCTC 58.341 47.619 0.00 0.00 35.26 3.71
1905 1919 2.834638 AGCATAACCTGGCAAATCCT 57.165 45.000 0.00 0.00 35.26 3.24
1906 1920 3.893326 AAAGCATAACCTGGCAAATCC 57.107 42.857 0.00 0.00 0.00 3.01
1907 1921 5.965922 ACTTAAAGCATAACCTGGCAAATC 58.034 37.500 0.00 0.00 0.00 2.17
1908 1922 6.165577 CAACTTAAAGCATAACCTGGCAAAT 58.834 36.000 0.00 0.00 0.00 2.32
1909 1923 5.537188 CAACTTAAAGCATAACCTGGCAAA 58.463 37.500 0.00 0.00 0.00 3.68
1910 1924 4.560513 GCAACTTAAAGCATAACCTGGCAA 60.561 41.667 0.00 0.00 0.00 4.52
1911 1925 3.056891 GCAACTTAAAGCATAACCTGGCA 60.057 43.478 0.00 0.00 0.00 4.92
1912 1926 3.511699 GCAACTTAAAGCATAACCTGGC 58.488 45.455 0.00 0.00 0.00 4.85
1913 1927 3.509575 TGGCAACTTAAAGCATAACCTGG 59.490 43.478 0.00 0.00 37.61 4.45
1914 1928 4.782019 TGGCAACTTAAAGCATAACCTG 57.218 40.909 0.00 0.00 37.61 4.00
1915 1929 6.358974 AAATGGCAACTTAAAGCATAACCT 57.641 33.333 0.00 0.00 37.61 3.50
1916 1930 8.716646 ATAAAATGGCAACTTAAAGCATAACC 57.283 30.769 0.00 0.00 37.61 2.85
1930 1944 3.587923 GCAACTGCAGATAAAATGGCAA 58.412 40.909 23.35 0.00 41.59 4.52
1945 1959 6.974622 ACAGTTTTCAAGAGTAAATGCAACTG 59.025 34.615 0.00 0.00 30.62 3.16
2000 2014 1.950216 TCATCCGATCCAGAAGACTCG 59.050 52.381 0.00 0.00 0.00 4.18
2044 2058 2.629137 TCCTCCTTAACACGCACTGTTA 59.371 45.455 0.77 0.77 41.63 2.41
2125 2139 9.515020 GAAACAGATTTTCACATGAACTACAAA 57.485 29.630 0.00 0.00 33.13 2.83
2134 2148 9.764870 CAGTACATAGAAACAGATTTTCACATG 57.235 33.333 0.00 0.00 33.30 3.21
2198 2221 1.690845 CCACTATGACTGGAGCTCCCT 60.691 57.143 29.95 15.12 35.38 4.20
2312 2335 9.973450 TGTGTGCATGTACTTAACAAATAAAAT 57.027 25.926 15.25 0.00 42.70 1.82
2346 2369 5.838529 TGGATAATGTATACACTGACACGG 58.161 41.667 7.96 0.00 0.00 4.94
2375 2398 7.284074 TCCTAGACAAATTTGTAGGTCAAACA 58.716 34.615 27.81 13.31 46.77 2.83
2460 2484 6.607600 TCCTACTTGACAGCACATACTTATCT 59.392 38.462 0.00 0.00 0.00 1.98
2473 2497 5.352569 CAGCCAAATTACTCCTACTTGACAG 59.647 44.000 0.00 0.00 0.00 3.51
2618 2642 3.951979 AGTGTGCTGAAAAAGAACTCG 57.048 42.857 0.00 0.00 35.13 4.18
2633 2657 4.037446 GAGCCTAGAGAGGATTGTAGTGTG 59.963 50.000 0.00 0.00 43.32 3.82
2708 2732 8.902806 CATTTATATTAAGTGTTCAGAAGGGCA 58.097 33.333 0.00 0.00 0.00 5.36
2727 2751 9.906660 ATTGTCGACAAAGAAAAAGCATTTATA 57.093 25.926 32.69 5.72 36.96 0.98
3088 3116 2.256461 GTGCGCCTTGCTTTCTGG 59.744 61.111 4.18 0.00 46.63 3.86
3284 3312 9.498176 GACTAGGTAACAGTAAAATTCCAGAAA 57.502 33.333 0.00 0.00 41.41 2.52
3298 3326 2.355818 GGGGGCTTTGACTAGGTAACAG 60.356 54.545 0.00 0.00 41.41 3.16
3322 3350 4.397420 TGTTATGGCAGATGACAACAACT 58.603 39.130 14.19 0.00 36.16 3.16
3376 3405 4.703093 GGCACCCTACATTGCTAAAGTTAA 59.297 41.667 0.00 0.00 38.85 2.01
3380 3409 2.722094 TGGCACCCTACATTGCTAAAG 58.278 47.619 0.00 0.00 38.85 1.85
3604 5155 5.297527 TGGAAGATACACAGCAGCATATTTG 59.702 40.000 0.00 0.00 0.00 2.32
3661 5212 0.246360 GGGTTTGCCATTCCTTTCCG 59.754 55.000 0.00 0.00 36.17 4.30
3664 5215 2.397044 TCTGGGTTTGCCATTCCTTT 57.603 45.000 0.00 0.00 36.17 3.11
3679 5230 3.415212 ACCATTCCGAATATGCATCTGG 58.585 45.455 0.19 0.83 0.00 3.86
3707 5258 1.142870 CCAACCTCCTTCAAGGACACA 59.857 52.381 0.34 0.00 40.06 3.72
3741 5292 2.664851 CTCGCAGGCGGTTGTCAA 60.665 61.111 14.24 0.00 40.25 3.18
3751 5302 2.159043 ACAGATATCACCAACTCGCAGG 60.159 50.000 5.32 0.00 0.00 4.85
3823 5374 4.906618 ACTAACACTGATCACGGGAAATT 58.093 39.130 0.00 0.00 0.00 1.82
3892 5445 9.841295 TTTTAGAGTACAAAACATAGTTCCAGT 57.159 29.630 0.00 0.00 0.00 4.00
3971 5527 5.799213 ACTAGGACTTGTGGAAATTCAGAG 58.201 41.667 0.00 0.00 0.00 3.35
3998 5554 6.093082 AGTTTACACGAAGCTAAAACAACACT 59.907 34.615 0.00 0.00 33.52 3.55
4021 5577 7.013274 ACACAGTGCAAAAATACAAGTCATAGT 59.987 33.333 0.00 0.00 0.00 2.12
4024 5580 6.147864 ACACAGTGCAAAAATACAAGTCAT 57.852 33.333 0.00 0.00 0.00 3.06
4037 5593 2.351455 TCAGAAACGAACACAGTGCAA 58.649 42.857 0.00 0.00 0.00 4.08
4045 5601 4.695217 AAACTTGCTTCAGAAACGAACA 57.305 36.364 0.00 0.00 0.00 3.18
4046 5602 4.671068 GCTAAACTTGCTTCAGAAACGAAC 59.329 41.667 0.00 0.00 0.00 3.95
4053 5609 4.757149 GGAAAGAGCTAAACTTGCTTCAGA 59.243 41.667 0.00 0.00 41.30 3.27
4054 5610 4.759183 AGGAAAGAGCTAAACTTGCTTCAG 59.241 41.667 0.00 0.00 41.30 3.02
4055 5611 4.718961 AGGAAAGAGCTAAACTTGCTTCA 58.281 39.130 0.00 0.00 41.30 3.02
4056 5612 5.000591 AGAGGAAAGAGCTAAACTTGCTTC 58.999 41.667 0.00 0.00 41.30 3.86
4057 5613 4.979335 AGAGGAAAGAGCTAAACTTGCTT 58.021 39.130 0.00 0.00 41.30 3.91
4059 5615 4.632251 GGTAGAGGAAAGAGCTAAACTTGC 59.368 45.833 0.00 0.00 0.00 4.01
4060 5616 5.872070 CAGGTAGAGGAAAGAGCTAAACTTG 59.128 44.000 0.00 0.00 0.00 3.16
4061 5617 5.046231 CCAGGTAGAGGAAAGAGCTAAACTT 60.046 44.000 0.00 0.00 0.00 2.66
4075 5632 4.518249 GAACAGATTTTCCCAGGTAGAGG 58.482 47.826 0.00 0.00 0.00 3.69
4105 5662 3.960002 CAGCGTTCGTGTAAAACAAAGAG 59.040 43.478 0.00 0.00 0.00 2.85
4106 5663 3.786161 GCAGCGTTCGTGTAAAACAAAGA 60.786 43.478 0.00 0.00 0.00 2.52
4107 5664 2.462565 GCAGCGTTCGTGTAAAACAAAG 59.537 45.455 0.00 0.00 0.00 2.77
4108 5665 2.442424 GCAGCGTTCGTGTAAAACAAA 58.558 42.857 0.00 0.00 0.00 2.83
4109 5666 1.592590 CGCAGCGTTCGTGTAAAACAA 60.593 47.619 6.65 0.00 0.00 2.83
4110 5667 0.042880 CGCAGCGTTCGTGTAAAACA 60.043 50.000 6.65 0.00 0.00 2.83
4111 5668 0.230260 TCGCAGCGTTCGTGTAAAAC 59.770 50.000 15.93 0.00 0.00 2.43
4112 5669 0.505231 CTCGCAGCGTTCGTGTAAAA 59.495 50.000 15.93 0.00 0.00 1.52
4113 5670 1.279527 CCTCGCAGCGTTCGTGTAAA 61.280 55.000 15.93 0.00 0.00 2.01
4114 5671 1.731613 CCTCGCAGCGTTCGTGTAA 60.732 57.895 15.93 0.00 0.00 2.41
4115 5672 2.126618 CCTCGCAGCGTTCGTGTA 60.127 61.111 15.93 0.00 0.00 2.90
4173 5731 1.362717 CGGCGGTAGGAATCACGAT 59.637 57.895 0.00 0.00 0.00 3.73
4174 5732 2.802792 CGGCGGTAGGAATCACGA 59.197 61.111 0.00 0.00 0.00 4.35
4175 5733 2.960129 GCGGCGGTAGGAATCACG 60.960 66.667 9.78 0.00 0.00 4.35
4176 5734 2.588034 GGCGGCGGTAGGAATCAC 60.588 66.667 9.78 0.00 0.00 3.06
4177 5735 4.215742 CGGCGGCGGTAGGAATCA 62.216 66.667 25.36 0.00 0.00 2.57
4186 5746 4.933064 TTTTTGTTGCGGCGGCGG 62.933 61.111 33.02 14.77 44.10 6.13
4207 5768 3.984749 GGCGGAGAGGAGGATCGC 61.985 72.222 0.00 0.00 44.80 4.58
4209 5770 2.128507 AACGGCGGAGAGGAGGATC 61.129 63.158 13.24 0.00 0.00 3.36
4226 5787 1.303074 CAGCAGCTTCCTCCAGCAA 60.303 57.895 0.00 0.00 42.84 3.91
4260 5834 1.594293 CCACGACGTGAGCAAGGTT 60.594 57.895 28.83 0.00 35.23 3.50
4270 5849 4.928140 AGGACACCCCCACGACGT 62.928 66.667 0.00 0.00 34.66 4.34
4291 5870 0.539669 TGAAGGAGACTCCGCTGTGA 60.540 55.000 15.97 0.00 42.75 3.58
4295 5874 0.894184 TTCGTGAAGGAGACTCCGCT 60.894 55.000 15.97 7.34 42.75 5.52
4322 5908 2.322081 CCGCCCAAAACATCGTCGT 61.322 57.895 0.00 0.00 0.00 4.34
4325 5911 1.657556 CAACCGCCCAAAACATCGT 59.342 52.632 0.00 0.00 0.00 3.73
4341 5927 2.597217 CCTGCCGGAACCAAGCAA 60.597 61.111 5.05 0.00 35.79 3.91
4346 5932 4.278513 CCCAACCTGCCGGAACCA 62.279 66.667 5.05 0.00 0.00 3.67
4475 6104 3.625897 TCCACAGACCACAGCCCG 61.626 66.667 0.00 0.00 0.00 6.13
4476 6105 2.032681 GTCCACAGACCACAGCCC 59.967 66.667 0.00 0.00 37.00 5.19
4477 6106 1.302033 CTGTCCACAGACCACAGCC 60.302 63.158 0.00 0.00 46.59 4.85
4485 6114 4.314440 GCCCACGCTGTCCACAGA 62.314 66.667 11.04 0.00 46.59 3.41
4609 6238 1.519455 CAACGGCCAGATCGAGGAC 60.519 63.158 2.24 7.18 0.00 3.85
4626 6255 2.603892 GCAGTAGTTCTCGAACACGTCA 60.604 50.000 11.90 0.00 43.47 4.35
4636 6265 2.303175 AGATCTCCGGCAGTAGTTCTC 58.697 52.381 0.00 0.00 0.00 2.87
4637 6266 2.428890 CAAGATCTCCGGCAGTAGTTCT 59.571 50.000 0.00 0.00 0.00 3.01
4662 6291 5.337169 GGATACTGTCCTATGCAGAATCCTC 60.337 48.000 0.00 0.00 44.16 3.71
4668 6297 2.239400 CCGGATACTGTCCTATGCAGA 58.761 52.381 0.00 0.00 45.46 4.26
4670 6299 1.961394 GACCGGATACTGTCCTATGCA 59.039 52.381 9.46 0.00 44.23 3.96
4671 6300 1.068472 CGACCGGATACTGTCCTATGC 60.068 57.143 9.46 0.00 46.94 3.14
4672 6301 2.228059 ACGACCGGATACTGTCCTATG 58.772 52.381 9.46 0.00 46.94 2.23
4675 6305 1.203994 CAAACGACCGGATACTGTCCT 59.796 52.381 9.46 0.00 46.94 3.85
4696 6326 0.246360 CACGTAGGCTGATGTGGACA 59.754 55.000 0.00 0.00 33.46 4.02
4721 6362 1.672356 AAATGGCAGAGCTTCGCGT 60.672 52.632 5.77 0.00 0.00 6.01
4735 6376 7.431960 CGACATGTCCCATAATGTAAACAAATG 59.568 37.037 20.03 0.00 37.15 2.32
4747 6388 2.727123 AATGCCGACATGTCCCATAA 57.273 45.000 20.03 2.31 36.36 1.90
4748 6389 2.571212 GAAATGCCGACATGTCCCATA 58.429 47.619 20.03 4.86 34.83 2.74
4784 6425 2.864343 CAAGACTTTCTCCGTCGTTGTT 59.136 45.455 0.00 0.00 36.53 2.83
4791 6432 4.039245 TCTCAACATCAAGACTTTCTCCGT 59.961 41.667 0.00 0.00 0.00 4.69


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.