Multiple sequence alignment - TraesCS4B01G080800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G080800 chr4B 100.000 5675 0 0 1 5675 78614999 78609325 0.000000e+00 10480
1 TraesCS4B01G080800 chr4A 95.309 4434 150 19 1269 5675 543366214 543370616 0.000000e+00 6983
2 TraesCS4B01G080800 chr4A 86.443 686 41 27 452 1131 543365184 543365823 0.000000e+00 704
3 TraesCS4B01G080800 chr4A 95.876 97 3 1 1278 1373 543365988 543366084 7.610000e-34 156
4 TraesCS4B01G080800 chr4D 94.092 4519 173 33 1195 5675 53762275 53757813 0.000000e+00 6780
5 TraesCS4B01G080800 chr4D 83.099 426 23 18 729 1131 53762807 53762408 5.440000e-90 342
6 TraesCS4B01G080800 chr4D 88.182 110 12 1 2755 2863 367828011 367827902 4.610000e-26 130
7 TraesCS4B01G080800 chr2D 88.005 792 81 12 2227 3005 547782834 547782044 0.000000e+00 924
8 TraesCS4B01G080800 chr2D 82.432 148 21 4 3355 3497 122703798 122703945 2.150000e-24 124
9 TraesCS4B01G080800 chr5A 89.408 642 58 7 2231 2864 11212982 11212343 0.000000e+00 800
10 TraesCS4B01G080800 chr5A 92.453 159 10 2 2703 2859 11733462 11733620 5.720000e-55 226
11 TraesCS4B01G080800 chr5A 83.226 155 9 8 3358 3497 656872437 656872285 5.970000e-25 126
12 TraesCS4B01G080800 chr5A 83.824 136 14 3 3362 3497 332721217 332721090 7.720000e-24 122
13 TraesCS4B01G080800 chr6A 88.650 652 60 9 2221 2858 490995178 490995829 0.000000e+00 782
14 TraesCS4B01G080800 chr6A 81.500 200 20 4 3039 3238 490995949 490996131 1.270000e-31 148
15 TraesCS4B01G080800 chr1D 89.855 414 36 3 2456 2864 233393136 233392724 1.400000e-145 527
16 TraesCS4B01G080800 chr3B 90.671 343 32 0 1 343 650352527 650352869 1.860000e-124 457
17 TraesCS4B01G080800 chr3B 90.058 342 32 1 4 343 61540915 61540574 5.220000e-120 442
18 TraesCS4B01G080800 chr3B 89.306 346 34 3 1 345 27105399 27105742 1.130000e-116 431
19 TraesCS4B01G080800 chr3B 81.395 129 20 4 3372 3499 284010125 284010000 1.010000e-17 102
20 TraesCS4B01G080800 chr6B 90.379 343 33 0 1 343 140718941 140718599 8.670000e-123 451
21 TraesCS4B01G080800 chr2B 90.173 346 34 0 1 346 497802016 497801671 8.670000e-123 451
22 TraesCS4B01G080800 chr2B 89.625 347 34 2 1 346 96387192 96387537 1.880000e-119 440
23 TraesCS4B01G080800 chr2B 89.565 345 35 1 1 345 620210833 620211176 2.430000e-118 436
24 TraesCS4B01G080800 chr2B 89.565 345 33 2 1 343 694694001 694694344 8.730000e-118 435
25 TraesCS4B01G080800 chr2B 88.889 351 35 2 1 347 65493378 65493728 4.060000e-116 429
26 TraesCS4B01G080800 chr7B 83.750 160 9 7 3356 3499 700413773 700413931 9.920000e-28 135
27 TraesCS4B01G080800 chr7B 85.366 123 12 6 3371 3491 48465614 48465496 7.720000e-24 122
28 TraesCS4B01G080800 chr3A 89.189 111 7 4 3381 3488 416307031 416307139 3.570000e-27 134
29 TraesCS4B01G080800 chr5D 83.226 155 9 8 3358 3497 528717430 528717278 5.970000e-25 126
30 TraesCS4B01G080800 chr3D 84.615 130 11 7 3365 3488 313816802 313816928 2.780000e-23 121
31 TraesCS4B01G080800 chr7D 84.677 124 11 8 3371 3491 94441228 94441110 3.590000e-22 117


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G080800 chr4B 78609325 78614999 5674 True 10480.000000 10480 100.000000 1 5675 1 chr4B.!!$R1 5674
1 TraesCS4B01G080800 chr4A 543365184 543370616 5432 False 2614.333333 6983 92.542667 452 5675 3 chr4A.!!$F1 5223
2 TraesCS4B01G080800 chr4D 53757813 53762807 4994 True 3561.000000 6780 88.595500 729 5675 2 chr4D.!!$R2 4946
3 TraesCS4B01G080800 chr2D 547782044 547782834 790 True 924.000000 924 88.005000 2227 3005 1 chr2D.!!$R1 778
4 TraesCS4B01G080800 chr5A 11212343 11212982 639 True 800.000000 800 89.408000 2231 2864 1 chr5A.!!$R1 633
5 TraesCS4B01G080800 chr6A 490995178 490996131 953 False 465.000000 782 85.075000 2221 3238 2 chr6A.!!$F1 1017

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
375 376 0.027586 GACGTTCAAGGTGTGTGTGC 59.972 55.0 0.00 0.0 0.00 4.57 F
395 396 0.037160 GGAGCCGGACTTTGGGTTTA 59.963 55.0 5.05 0.0 37.33 2.01 F
1208 1529 0.106708 TGCTGATATGCCCGAACTCC 59.893 55.0 0.00 0.0 0.00 3.85 F
1717 2052 0.108585 TCCCAAGACACCAGCAGTTC 59.891 55.0 0.00 0.0 0.00 3.01 F
2139 2476 0.178068 TGACCGCAGATAGGAAAGCC 59.822 55.0 0.00 0.0 0.00 4.35 F
3234 3593 1.501582 AGACTCAATAGCCCCCACTC 58.498 55.0 0.00 0.0 0.00 3.51 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1197 1518 0.331278 ATTTCCATGGAGTTCGGGCA 59.669 50.000 15.53 0.0 0.00 5.36 R
1933 2268 0.542702 AGGTGGATTGGCTTGTTGGG 60.543 55.000 0.00 0.0 0.00 4.12 R
2130 2467 1.053424 ACTGTTCACCGGCTTTCCTA 58.947 50.000 0.00 0.0 0.00 2.94 R
3713 4077 2.381911 ACATGTCATGGGGAGCATTTC 58.618 47.619 17.08 0.0 33.60 2.17 R
3769 4133 2.100916 GCCTTCAGCTATCTCGGTGTAA 59.899 50.000 0.00 0.0 38.99 2.41 R
4856 5222 0.839946 ACCAAGCCACTCAGTTCACT 59.160 50.000 0.00 0.0 0.00 3.41 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 2.685470 CGAGTCAGAATCGAAAAGCG 57.315 50.000 15.13 0.00 42.76 4.68
29 30 2.693797 TCGAAAAGCGACGAGTAGTT 57.306 45.000 0.00 0.00 45.59 2.24
30 31 2.313234 TCGAAAAGCGACGAGTAGTTG 58.687 47.619 0.00 0.00 45.59 3.16
31 32 2.031769 TCGAAAAGCGACGAGTAGTTGA 60.032 45.455 0.00 0.00 45.59 3.18
32 33 2.915463 CGAAAAGCGACGAGTAGTTGAT 59.085 45.455 0.00 0.00 44.57 2.57
33 34 3.001954 CGAAAAGCGACGAGTAGTTGATC 60.002 47.826 0.00 0.00 44.57 2.92
34 35 3.851976 AAAGCGACGAGTAGTTGATCT 57.148 42.857 0.00 0.00 36.30 2.75
35 36 3.851976 AAGCGACGAGTAGTTGATCTT 57.148 42.857 0.00 0.00 36.30 2.40
36 37 3.851976 AGCGACGAGTAGTTGATCTTT 57.148 42.857 0.00 0.00 36.30 2.52
37 38 4.175787 AGCGACGAGTAGTTGATCTTTT 57.824 40.909 0.00 0.00 36.30 2.27
38 39 4.167268 AGCGACGAGTAGTTGATCTTTTC 58.833 43.478 0.00 0.00 36.30 2.29
39 40 4.082679 AGCGACGAGTAGTTGATCTTTTCT 60.083 41.667 0.00 0.00 36.30 2.52
40 41 4.621886 GCGACGAGTAGTTGATCTTTTCTT 59.378 41.667 0.00 0.00 36.30 2.52
41 42 5.118817 GCGACGAGTAGTTGATCTTTTCTTT 59.881 40.000 0.00 0.00 36.30 2.52
42 43 6.346678 GCGACGAGTAGTTGATCTTTTCTTTT 60.347 38.462 0.00 0.00 36.30 2.27
43 44 7.148853 GCGACGAGTAGTTGATCTTTTCTTTTA 60.149 37.037 0.00 0.00 36.30 1.52
44 45 8.861101 CGACGAGTAGTTGATCTTTTCTTTTAT 58.139 33.333 0.00 0.00 36.30 1.40
46 47 9.930693 ACGAGTAGTTGATCTTTTCTTTTATCT 57.069 29.630 0.00 0.00 0.00 1.98
53 54 9.530129 GTTGATCTTTTCTTTTATCTGTGTACG 57.470 33.333 0.00 0.00 0.00 3.67
54 55 7.739295 TGATCTTTTCTTTTATCTGTGTACGC 58.261 34.615 0.00 0.00 0.00 4.42
55 56 7.386573 TGATCTTTTCTTTTATCTGTGTACGCA 59.613 33.333 9.13 9.13 0.00 5.24
56 57 7.485418 TCTTTTCTTTTATCTGTGTACGCAA 57.515 32.000 10.85 2.41 0.00 4.85
58 59 7.439955 TCTTTTCTTTTATCTGTGTACGCAAGA 59.560 33.333 10.85 10.26 43.62 3.02
59 60 7.485418 TTTCTTTTATCTGTGTACGCAAGAA 57.515 32.000 10.85 11.92 43.62 2.52
60 61 6.462073 TCTTTTATCTGTGTACGCAAGAAC 57.538 37.500 10.85 0.00 43.62 3.01
61 62 6.220930 TCTTTTATCTGTGTACGCAAGAACT 58.779 36.000 10.85 0.10 43.62 3.01
62 63 7.372714 TCTTTTATCTGTGTACGCAAGAACTA 58.627 34.615 10.85 0.00 43.62 2.24
63 64 8.033038 TCTTTTATCTGTGTACGCAAGAACTAT 58.967 33.333 10.85 0.93 43.62 2.12
64 65 7.751047 TTTATCTGTGTACGCAAGAACTATC 57.249 36.000 10.85 0.00 43.62 2.08
65 66 5.584253 ATCTGTGTACGCAAGAACTATCT 57.416 39.130 10.85 0.00 43.62 1.98
66 67 6.694877 ATCTGTGTACGCAAGAACTATCTA 57.305 37.500 10.85 0.00 43.62 1.98
67 68 6.694877 TCTGTGTACGCAAGAACTATCTAT 57.305 37.500 10.85 0.00 43.62 1.98
68 69 6.495706 TCTGTGTACGCAAGAACTATCTATG 58.504 40.000 10.85 0.00 43.62 2.23
69 70 6.095021 TCTGTGTACGCAAGAACTATCTATGT 59.905 38.462 10.85 0.00 43.62 2.29
70 71 7.281549 TCTGTGTACGCAAGAACTATCTATGTA 59.718 37.037 10.85 0.00 43.62 2.29
71 72 7.937649 TGTGTACGCAAGAACTATCTATGTAT 58.062 34.615 6.65 0.00 43.62 2.29
72 73 8.410912 TGTGTACGCAAGAACTATCTATGTATT 58.589 33.333 6.65 0.00 43.62 1.89
73 74 8.903723 GTGTACGCAAGAACTATCTATGTATTC 58.096 37.037 0.39 0.00 43.62 1.75
74 75 8.847196 TGTACGCAAGAACTATCTATGTATTCT 58.153 33.333 0.00 0.00 43.62 2.40
75 76 9.680315 GTACGCAAGAACTATCTATGTATTCTT 57.320 33.333 0.00 0.00 39.58 2.52
77 78 9.601217 ACGCAAGAACTATCTATGTATTCTTTT 57.399 29.630 0.00 0.00 37.48 2.27
128 129 4.699522 GAAGCCGGCGGTGAAGGT 62.700 66.667 28.82 2.95 0.00 3.50
129 130 4.265056 AAGCCGGCGGTGAAGGTT 62.265 61.111 28.82 9.83 0.00 3.50
132 133 3.353836 CCGGCGGTGAAGGTTGTG 61.354 66.667 19.97 0.00 0.00 3.33
133 134 4.025401 CGGCGGTGAAGGTTGTGC 62.025 66.667 0.00 0.00 0.00 4.57
134 135 2.904866 GGCGGTGAAGGTTGTGCA 60.905 61.111 0.00 0.00 0.00 4.57
135 136 2.331451 GCGGTGAAGGTTGTGCAC 59.669 61.111 10.75 10.75 0.00 4.57
136 137 2.631428 CGGTGAAGGTTGTGCACG 59.369 61.111 13.13 0.00 33.48 5.34
137 138 2.331451 GGTGAAGGTTGTGCACGC 59.669 61.111 13.13 7.53 33.48 5.34
138 139 2.052237 GTGAAGGTTGTGCACGCG 60.052 61.111 13.13 3.53 0.00 6.01
139 140 3.947841 TGAAGGTTGTGCACGCGC 61.948 61.111 13.13 0.00 39.24 6.86
150 151 4.544689 CACGCGCGGAGAGGAGAG 62.545 72.222 35.22 7.84 0.00 3.20
151 152 4.779966 ACGCGCGGAGAGGAGAGA 62.780 66.667 35.22 0.00 0.00 3.10
152 153 3.947841 CGCGCGGAGAGGAGAGAG 61.948 72.222 24.84 0.00 0.00 3.20
153 154 3.591835 GCGCGGAGAGGAGAGAGG 61.592 72.222 8.83 0.00 0.00 3.69
154 155 2.904866 CGCGGAGAGGAGAGAGGG 60.905 72.222 0.00 0.00 0.00 4.30
155 156 3.223589 GCGGAGAGGAGAGAGGGC 61.224 72.222 0.00 0.00 0.00 5.19
156 157 2.904866 CGGAGAGGAGAGAGGGCG 60.905 72.222 0.00 0.00 0.00 6.13
157 158 3.223589 GGAGAGGAGAGAGGGCGC 61.224 72.222 0.00 0.00 0.00 6.53
158 159 3.591835 GAGAGGAGAGAGGGCGCG 61.592 72.222 0.00 0.00 0.00 6.86
174 175 4.734920 CGCGCGCATCCGTTTTGT 62.735 61.111 32.61 0.00 36.67 2.83
175 176 3.165318 GCGCGCATCCGTTTTGTG 61.165 61.111 29.10 0.00 36.67 3.33
176 177 2.251075 CGCGCATCCGTTTTGTGT 59.749 55.556 8.75 0.00 36.67 3.72
177 178 1.792057 CGCGCATCCGTTTTGTGTC 60.792 57.895 8.75 0.00 36.67 3.67
178 179 1.442017 GCGCATCCGTTTTGTGTCC 60.442 57.895 0.30 0.00 36.67 4.02
179 180 1.154488 CGCATCCGTTTTGTGTCCG 60.154 57.895 0.00 0.00 0.00 4.79
180 181 1.442017 GCATCCGTTTTGTGTCCGC 60.442 57.895 0.00 0.00 0.00 5.54
181 182 1.154488 CATCCGTTTTGTGTCCGCG 60.154 57.895 0.00 0.00 0.00 6.46
182 183 2.961669 ATCCGTTTTGTGTCCGCGC 61.962 57.895 0.00 0.00 0.00 6.86
183 184 4.676586 CCGTTTTGTGTCCGCGCC 62.677 66.667 0.00 0.00 0.00 6.53
185 186 3.641986 GTTTTGTGTCCGCGCCGA 61.642 61.111 0.00 0.00 0.00 5.54
186 187 3.641986 TTTTGTGTCCGCGCCGAC 61.642 61.111 20.04 20.04 0.00 4.79
209 210 3.004862 CAAATCCTGCTCAAAAATGGGC 58.995 45.455 0.00 0.00 0.00 5.36
210 211 1.197812 ATCCTGCTCAAAAATGGGCC 58.802 50.000 0.00 0.00 0.00 5.80
211 212 1.216178 CCTGCTCAAAAATGGGCCG 59.784 57.895 0.00 0.00 0.00 6.13
212 213 1.250154 CCTGCTCAAAAATGGGCCGA 61.250 55.000 0.00 0.00 0.00 5.54
213 214 0.171903 CTGCTCAAAAATGGGCCGAG 59.828 55.000 0.00 0.00 0.00 4.63
214 215 0.251121 TGCTCAAAAATGGGCCGAGA 60.251 50.000 7.90 0.00 0.00 4.04
215 216 0.887933 GCTCAAAAATGGGCCGAGAA 59.112 50.000 7.90 0.00 0.00 2.87
216 217 1.478105 GCTCAAAAATGGGCCGAGAAT 59.522 47.619 7.90 0.00 0.00 2.40
217 218 2.736400 GCTCAAAAATGGGCCGAGAATG 60.736 50.000 7.90 0.61 0.00 2.67
218 219 1.824230 TCAAAAATGGGCCGAGAATGG 59.176 47.619 0.00 0.00 0.00 3.16
219 220 1.134729 CAAAAATGGGCCGAGAATGGG 60.135 52.381 0.00 0.00 36.85 4.00
220 221 0.041090 AAAATGGGCCGAGAATGGGT 59.959 50.000 0.00 0.00 35.77 4.51
221 222 0.395724 AAATGGGCCGAGAATGGGTC 60.396 55.000 0.00 0.00 38.16 4.46
222 223 2.608970 AATGGGCCGAGAATGGGTCG 62.609 60.000 0.00 0.00 40.76 4.79
227 228 4.294523 CGAGAATGGGTCGGCAAA 57.705 55.556 0.00 0.00 33.66 3.68
228 229 1.794222 CGAGAATGGGTCGGCAAAC 59.206 57.895 0.00 0.00 33.66 2.93
229 230 1.794222 GAGAATGGGTCGGCAAACG 59.206 57.895 0.00 0.00 46.11 3.60
230 231 1.644786 GAGAATGGGTCGGCAAACGG 61.645 60.000 0.00 0.00 44.45 4.44
231 232 1.673009 GAATGGGTCGGCAAACGGA 60.673 57.895 0.00 0.00 44.45 4.69
232 233 1.918868 GAATGGGTCGGCAAACGGAC 61.919 60.000 0.00 0.00 44.45 4.79
233 234 2.684192 AATGGGTCGGCAAACGGACA 62.684 55.000 6.18 0.00 45.36 4.02
234 235 2.592287 GGGTCGGCAAACGGACAA 60.592 61.111 6.18 0.00 45.36 3.18
235 236 2.188161 GGGTCGGCAAACGGACAAA 61.188 57.895 6.18 0.00 45.36 2.83
236 237 1.726533 GGGTCGGCAAACGGACAAAA 61.727 55.000 6.18 0.00 45.36 2.44
237 238 0.317519 GGTCGGCAAACGGACAAAAG 60.318 55.000 6.18 0.00 45.36 2.27
238 239 0.933047 GTCGGCAAACGGACAAAAGC 60.933 55.000 0.00 0.00 43.60 3.51
239 240 1.064946 CGGCAAACGGACAAAAGCA 59.935 52.632 0.00 0.00 39.42 3.91
240 241 0.934436 CGGCAAACGGACAAAAGCAG 60.934 55.000 0.00 0.00 39.42 4.24
241 242 0.383949 GGCAAACGGACAAAAGCAGA 59.616 50.000 0.00 0.00 0.00 4.26
242 243 1.477105 GCAAACGGACAAAAGCAGAC 58.523 50.000 0.00 0.00 0.00 3.51
243 244 1.741993 CAAACGGACAAAAGCAGACG 58.258 50.000 0.00 0.00 0.00 4.18
244 245 0.028902 AAACGGACAAAAGCAGACGC 59.971 50.000 0.00 0.00 38.99 5.19
245 246 2.101209 AACGGACAAAAGCAGACGCG 62.101 55.000 3.53 3.53 45.49 6.01
246 247 2.127232 GGACAAAAGCAGACGCGC 60.127 61.111 5.73 0.00 45.49 6.86
247 248 2.631428 GACAAAAGCAGACGCGCA 59.369 55.556 5.73 0.00 45.49 6.09
248 249 1.207593 GACAAAAGCAGACGCGCAT 59.792 52.632 5.73 0.00 45.49 4.73
249 250 0.790866 GACAAAAGCAGACGCGCATC 60.791 55.000 5.73 0.00 45.49 3.91
250 251 1.512734 CAAAAGCAGACGCGCATCC 60.513 57.895 5.73 0.00 45.49 3.51
251 252 3.027170 AAAAGCAGACGCGCATCCG 62.027 57.895 5.73 0.00 45.49 4.18
252 253 4.742201 AAGCAGACGCGCATCCGT 62.742 61.111 5.73 0.00 45.49 4.69
253 254 4.742201 AGCAGACGCGCATCCGTT 62.742 61.111 5.73 0.00 45.49 4.44
254 255 3.788766 GCAGACGCGCATCCGTTT 61.789 61.111 5.73 0.00 42.24 3.60
255 256 2.096406 CAGACGCGCATCCGTTTG 59.904 61.111 5.73 0.00 42.24 2.93
256 257 3.118454 AGACGCGCATCCGTTTGG 61.118 61.111 5.73 0.00 42.24 3.28
257 258 4.160635 GACGCGCATCCGTTTGGG 62.161 66.667 5.73 0.00 42.24 4.12
259 260 4.160635 CGCGCATCCGTTTGGGTC 62.161 66.667 8.75 0.00 37.00 4.46
260 261 4.160635 GCGCATCCGTTTGGGTCG 62.161 66.667 0.30 0.00 37.00 4.79
262 263 3.810896 GCATCCGTTTGGGTCGGC 61.811 66.667 0.00 0.00 46.49 5.54
263 264 3.496131 CATCCGTTTGGGTCGGCG 61.496 66.667 0.00 0.00 46.49 6.46
268 269 4.676586 GTTTGGGTCGGCGCGTTG 62.677 66.667 8.43 0.00 0.00 4.10
279 280 3.656045 CGCGTTGGGCCGTCTTTT 61.656 61.111 0.00 0.00 38.94 2.27
280 281 2.319096 CGCGTTGGGCCGTCTTTTA 61.319 57.895 0.00 0.00 38.94 1.52
281 282 1.641123 CGCGTTGGGCCGTCTTTTAT 61.641 55.000 0.00 0.00 38.94 1.40
282 283 0.179174 GCGTTGGGCCGTCTTTTATG 60.179 55.000 0.00 0.00 34.80 1.90
283 284 1.161843 CGTTGGGCCGTCTTTTATGT 58.838 50.000 0.00 0.00 0.00 2.29
284 285 1.129811 CGTTGGGCCGTCTTTTATGTC 59.870 52.381 0.00 0.00 0.00 3.06
285 286 1.471287 GTTGGGCCGTCTTTTATGTCC 59.529 52.381 0.00 0.00 0.00 4.02
286 287 0.693622 TGGGCCGTCTTTTATGTCCA 59.306 50.000 0.00 0.00 0.00 4.02
287 288 1.092348 GGGCCGTCTTTTATGTCCAC 58.908 55.000 0.00 0.00 0.00 4.02
288 289 1.612199 GGGCCGTCTTTTATGTCCACA 60.612 52.381 0.00 0.00 0.00 4.17
289 290 1.467342 GGCCGTCTTTTATGTCCACAC 59.533 52.381 0.00 0.00 0.00 3.82
290 291 1.467342 GCCGTCTTTTATGTCCACACC 59.533 52.381 0.00 0.00 0.00 4.16
291 292 2.773487 CCGTCTTTTATGTCCACACCA 58.227 47.619 0.00 0.00 0.00 4.17
292 293 3.142951 CCGTCTTTTATGTCCACACCAA 58.857 45.455 0.00 0.00 0.00 3.67
293 294 3.756434 CCGTCTTTTATGTCCACACCAAT 59.244 43.478 0.00 0.00 0.00 3.16
294 295 4.142687 CCGTCTTTTATGTCCACACCAATC 60.143 45.833 0.00 0.00 0.00 2.67
295 296 4.695455 CGTCTTTTATGTCCACACCAATCT 59.305 41.667 0.00 0.00 0.00 2.40
296 297 5.872617 CGTCTTTTATGTCCACACCAATCTA 59.127 40.000 0.00 0.00 0.00 1.98
297 298 6.370442 CGTCTTTTATGTCCACACCAATCTAA 59.630 38.462 0.00 0.00 0.00 2.10
298 299 7.094975 CGTCTTTTATGTCCACACCAATCTAAA 60.095 37.037 0.00 0.00 0.00 1.85
299 300 8.739972 GTCTTTTATGTCCACACCAATCTAAAT 58.260 33.333 0.00 0.00 0.00 1.40
300 301 9.967451 TCTTTTATGTCCACACCAATCTAAATA 57.033 29.630 0.00 0.00 0.00 1.40
302 303 9.967451 TTTTATGTCCACACCAATCTAAATAGA 57.033 29.630 0.00 0.00 36.65 1.98
303 304 8.958119 TTATGTCCACACCAATCTAAATAGAC 57.042 34.615 0.00 0.00 34.72 2.59
304 305 5.416083 TGTCCACACCAATCTAAATAGACG 58.584 41.667 0.00 0.00 34.72 4.18
305 306 4.270325 GTCCACACCAATCTAAATAGACGC 59.730 45.833 0.00 0.00 34.72 5.19
306 307 3.245284 CCACACCAATCTAAATAGACGCG 59.755 47.826 3.53 3.53 34.72 6.01
307 308 3.245284 CACACCAATCTAAATAGACGCGG 59.755 47.826 12.47 0.00 34.72 6.46
308 309 2.800544 CACCAATCTAAATAGACGCGGG 59.199 50.000 12.47 0.00 34.72 6.13
309 310 1.798813 CCAATCTAAATAGACGCGGGC 59.201 52.381 12.47 1.16 34.72 6.13
310 311 1.455786 CAATCTAAATAGACGCGGGCG 59.544 52.381 12.47 12.04 46.03 6.13
311 312 0.038526 ATCTAAATAGACGCGGGCGG 60.039 55.000 18.03 0.00 44.69 6.13
312 313 1.102809 TCTAAATAGACGCGGGCGGA 61.103 55.000 18.03 2.56 44.69 5.54
313 314 0.938168 CTAAATAGACGCGGGCGGAC 60.938 60.000 18.03 10.74 44.69 4.79
314 315 2.666715 TAAATAGACGCGGGCGGACG 62.667 60.000 18.03 1.82 44.69 4.79
322 323 4.770874 CGGGCGGACGAAATGGGT 62.771 66.667 0.00 0.00 35.47 4.51
323 324 2.822701 GGGCGGACGAAATGGGTC 60.823 66.667 0.00 0.00 0.00 4.46
324 325 3.192922 GGCGGACGAAATGGGTCG 61.193 66.667 0.00 0.00 46.54 4.79
325 326 3.861263 GCGGACGAAATGGGTCGC 61.861 66.667 0.00 0.00 45.00 5.19
326 327 3.192922 CGGACGAAATGGGTCGCC 61.193 66.667 0.00 0.00 45.00 5.54
327 328 2.822701 GGACGAAATGGGTCGCCC 60.823 66.667 7.87 7.87 45.00 6.13
336 337 2.267961 GGGTCGCCCGATTGAAGT 59.732 61.111 0.00 0.00 32.13 3.01
337 338 1.376812 GGGTCGCCCGATTGAAGTT 60.377 57.895 0.00 0.00 32.13 2.66
338 339 1.644786 GGGTCGCCCGATTGAAGTTG 61.645 60.000 0.00 0.00 32.13 3.16
339 340 1.134694 GTCGCCCGATTGAAGTTGC 59.865 57.895 0.00 0.00 0.00 4.17
340 341 1.003839 TCGCCCGATTGAAGTTGCT 60.004 52.632 0.00 0.00 0.00 3.91
341 342 1.019278 TCGCCCGATTGAAGTTGCTC 61.019 55.000 0.00 0.00 0.00 4.26
342 343 1.021390 CGCCCGATTGAAGTTGCTCT 61.021 55.000 0.00 0.00 0.00 4.09
343 344 1.168714 GCCCGATTGAAGTTGCTCTT 58.831 50.000 0.00 0.00 39.32 2.85
344 345 2.356135 GCCCGATTGAAGTTGCTCTTA 58.644 47.619 0.00 0.00 36.40 2.10
345 346 2.352960 GCCCGATTGAAGTTGCTCTTAG 59.647 50.000 0.00 0.00 36.40 2.18
346 347 3.600388 CCCGATTGAAGTTGCTCTTAGT 58.400 45.455 0.00 0.00 36.40 2.24
347 348 3.372206 CCCGATTGAAGTTGCTCTTAGTG 59.628 47.826 0.00 0.00 36.40 2.74
348 349 3.997021 CCGATTGAAGTTGCTCTTAGTGT 59.003 43.478 0.00 0.00 36.40 3.55
349 350 4.092091 CCGATTGAAGTTGCTCTTAGTGTC 59.908 45.833 0.00 0.00 36.40 3.67
350 351 4.092091 CGATTGAAGTTGCTCTTAGTGTCC 59.908 45.833 0.00 0.00 36.40 4.02
351 352 3.026630 TGAAGTTGCTCTTAGTGTCCG 57.973 47.619 0.00 0.00 36.40 4.79
352 353 2.364324 TGAAGTTGCTCTTAGTGTCCGT 59.636 45.455 0.00 0.00 36.40 4.69
353 354 2.726832 AGTTGCTCTTAGTGTCCGTC 57.273 50.000 0.00 0.00 0.00 4.79
354 355 1.272769 AGTTGCTCTTAGTGTCCGTCC 59.727 52.381 0.00 0.00 0.00 4.79
355 356 0.242825 TTGCTCTTAGTGTCCGTCCG 59.757 55.000 0.00 0.00 0.00 4.79
356 357 1.139095 GCTCTTAGTGTCCGTCCGG 59.861 63.158 0.00 0.00 0.00 5.14
357 358 1.310933 GCTCTTAGTGTCCGTCCGGA 61.311 60.000 0.00 0.00 42.90 5.14
368 369 3.946907 GTCCGGACGTTCAAGGTG 58.053 61.111 20.85 0.00 0.00 4.00
369 370 1.068585 GTCCGGACGTTCAAGGTGT 59.931 57.895 20.85 0.00 0.00 4.16
370 371 1.068417 TCCGGACGTTCAAGGTGTG 59.932 57.895 0.00 0.00 0.00 3.82
371 372 1.227438 CCGGACGTTCAAGGTGTGT 60.227 57.895 0.00 0.00 0.00 3.72
372 373 1.495584 CCGGACGTTCAAGGTGTGTG 61.496 60.000 0.00 0.00 0.00 3.82
373 374 0.808453 CGGACGTTCAAGGTGTGTGT 60.808 55.000 0.00 0.00 0.00 3.72
374 375 0.655733 GGACGTTCAAGGTGTGTGTG 59.344 55.000 0.00 0.00 0.00 3.82
375 376 0.027586 GACGTTCAAGGTGTGTGTGC 59.972 55.000 0.00 0.00 0.00 4.57
376 377 1.011242 CGTTCAAGGTGTGTGTGCG 60.011 57.895 0.00 0.00 0.00 5.34
377 378 1.355210 GTTCAAGGTGTGTGTGCGG 59.645 57.895 0.00 0.00 0.00 5.69
378 379 1.092921 GTTCAAGGTGTGTGTGCGGA 61.093 55.000 0.00 0.00 0.00 5.54
379 380 0.813610 TTCAAGGTGTGTGTGCGGAG 60.814 55.000 0.00 0.00 0.00 4.63
392 393 4.016706 CGGAGCCGGACTTTGGGT 62.017 66.667 5.05 0.00 40.61 4.51
393 394 2.434774 GGAGCCGGACTTTGGGTT 59.565 61.111 5.05 0.00 37.33 4.11
394 395 1.228459 GGAGCCGGACTTTGGGTTT 60.228 57.895 5.05 0.00 37.33 3.27
395 396 0.037160 GGAGCCGGACTTTGGGTTTA 59.963 55.000 5.05 0.00 37.33 2.01
396 397 1.450025 GAGCCGGACTTTGGGTTTAG 58.550 55.000 5.05 0.00 37.33 1.85
397 398 0.769247 AGCCGGACTTTGGGTTTAGT 59.231 50.000 5.05 0.00 32.04 2.24
398 399 1.162698 GCCGGACTTTGGGTTTAGTC 58.837 55.000 5.05 0.00 40.00 2.59
399 400 1.543871 GCCGGACTTTGGGTTTAGTCA 60.544 52.381 5.05 0.00 41.99 3.41
400 401 2.423577 CCGGACTTTGGGTTTAGTCAG 58.576 52.381 0.00 0.00 41.99 3.51
401 402 2.423577 CGGACTTTGGGTTTAGTCAGG 58.576 52.381 0.00 0.00 41.99 3.86
402 403 2.160205 GGACTTTGGGTTTAGTCAGGC 58.840 52.381 0.00 0.00 41.99 4.85
403 404 2.488347 GGACTTTGGGTTTAGTCAGGCA 60.488 50.000 0.00 0.00 41.99 4.75
404 405 3.421844 GACTTTGGGTTTAGTCAGGCAT 58.578 45.455 0.00 0.00 40.35 4.40
405 406 4.566907 GGACTTTGGGTTTAGTCAGGCATA 60.567 45.833 0.00 0.00 41.99 3.14
406 407 4.332828 ACTTTGGGTTTAGTCAGGCATAC 58.667 43.478 0.00 0.00 0.00 2.39
407 408 2.684001 TGGGTTTAGTCAGGCATACG 57.316 50.000 0.00 0.00 0.00 3.06
408 409 1.903860 TGGGTTTAGTCAGGCATACGT 59.096 47.619 0.00 0.00 0.00 3.57
409 410 2.277084 GGGTTTAGTCAGGCATACGTG 58.723 52.381 0.00 0.00 0.00 4.49
427 428 2.807470 CGTGACACATACGCCGCA 60.807 61.111 6.37 0.00 34.56 5.69
428 429 2.788176 CGTGACACATACGCCGCAG 61.788 63.158 6.37 0.00 34.56 5.18
429 430 2.813474 TGACACATACGCCGCAGC 60.813 61.111 0.00 0.00 0.00 5.25
430 431 2.813474 GACACATACGCCGCAGCA 60.813 61.111 0.00 0.00 39.83 4.41
431 432 3.083600 GACACATACGCCGCAGCAC 62.084 63.158 0.00 0.00 39.83 4.40
432 433 4.208948 CACATACGCCGCAGCACG 62.209 66.667 3.34 3.34 39.83 5.34
442 443 3.437795 GCAGCACGCTTCCAGCAT 61.438 61.111 0.00 0.00 42.58 3.79
443 444 2.108514 GCAGCACGCTTCCAGCATA 61.109 57.895 0.00 0.00 42.58 3.14
444 445 2.012237 CAGCACGCTTCCAGCATAG 58.988 57.895 0.00 0.00 42.58 2.23
445 446 1.817099 AGCACGCTTCCAGCATAGC 60.817 57.895 0.00 0.00 42.58 2.97
446 447 2.828128 GCACGCTTCCAGCATAGCC 61.828 63.158 0.00 0.00 42.58 3.93
447 448 2.202932 ACGCTTCCAGCATAGCCG 60.203 61.111 0.00 0.00 42.58 5.52
448 449 3.643978 CGCTTCCAGCATAGCCGC 61.644 66.667 0.00 0.00 42.58 6.53
449 450 3.643978 GCTTCCAGCATAGCCGCG 61.644 66.667 0.00 0.00 41.89 6.46
450 451 3.643978 CTTCCAGCATAGCCGCGC 61.644 66.667 0.00 0.00 36.85 6.86
557 559 2.773053 GGCTAGGAACCCTCCCCC 60.773 72.222 0.00 0.00 43.64 5.40
579 581 4.834453 CTGCAGCTGGGCGAGGAG 62.834 72.222 17.12 0.00 36.28 3.69
599 601 4.856607 CGCTCGACCTCCGCTTCC 62.857 72.222 0.00 0.00 38.37 3.46
600 602 4.516195 GCTCGACCTCCGCTTCCC 62.516 72.222 0.00 0.00 38.37 3.97
601 603 3.839432 CTCGACCTCCGCTTCCCC 61.839 72.222 0.00 0.00 38.37 4.81
604 606 4.097361 GACCTCCGCTTCCCCCAC 62.097 72.222 0.00 0.00 0.00 4.61
662 667 0.904649 TGCCATACAGGTCACTCCAG 59.095 55.000 0.00 0.00 40.61 3.86
668 673 1.507140 ACAGGTCACTCCAGGAACAA 58.493 50.000 0.00 0.00 39.02 2.83
669 674 1.843851 ACAGGTCACTCCAGGAACAAA 59.156 47.619 0.00 0.00 39.02 2.83
670 675 2.222027 CAGGTCACTCCAGGAACAAAC 58.778 52.381 0.00 0.00 39.02 2.93
671 676 1.843851 AGGTCACTCCAGGAACAAACA 59.156 47.619 0.00 0.00 39.02 2.83
672 677 2.158755 AGGTCACTCCAGGAACAAACAG 60.159 50.000 0.00 0.00 39.02 3.16
673 678 2.421529 GGTCACTCCAGGAACAAACAGT 60.422 50.000 0.00 0.00 35.97 3.55
674 679 3.279434 GTCACTCCAGGAACAAACAGTT 58.721 45.455 0.00 0.00 44.93 3.16
675 680 5.749150 GGTCACTCCAGGAACAAACAGTTC 61.749 50.000 0.00 0.00 44.60 3.01
696 701 1.760192 GTTCCCACGAGGCTAGTAGA 58.240 55.000 0.00 0.00 34.51 2.59
697 702 2.097825 GTTCCCACGAGGCTAGTAGAA 58.902 52.381 0.00 4.28 34.51 2.10
698 703 2.494870 GTTCCCACGAGGCTAGTAGAAA 59.505 50.000 11.97 0.54 34.51 2.52
699 704 2.376109 TCCCACGAGGCTAGTAGAAAG 58.624 52.381 0.00 0.00 34.51 2.62
701 706 2.100989 CCACGAGGCTAGTAGAAAGGT 58.899 52.381 0.00 0.00 0.00 3.50
702 707 3.285484 CCACGAGGCTAGTAGAAAGGTA 58.715 50.000 0.00 0.00 0.00 3.08
703 708 3.066481 CCACGAGGCTAGTAGAAAGGTAC 59.934 52.174 0.00 0.00 0.00 3.34
704 709 2.941720 ACGAGGCTAGTAGAAAGGTACG 59.058 50.000 0.00 0.00 0.00 3.67
705 710 2.941720 CGAGGCTAGTAGAAAGGTACGT 59.058 50.000 0.00 0.00 0.00 3.57
706 711 3.242673 CGAGGCTAGTAGAAAGGTACGTG 60.243 52.174 0.00 0.00 0.00 4.49
707 712 2.426381 AGGCTAGTAGAAAGGTACGTGC 59.574 50.000 0.00 0.00 0.00 5.34
708 713 2.480932 GGCTAGTAGAAAGGTACGTGCC 60.481 54.545 15.72 15.72 38.24 5.01
709 714 2.480932 GCTAGTAGAAAGGTACGTGCCC 60.481 54.545 19.90 8.58 0.00 5.36
710 715 1.934410 AGTAGAAAGGTACGTGCCCT 58.066 50.000 19.90 11.83 0.00 5.19
711 716 1.823610 AGTAGAAAGGTACGTGCCCTC 59.176 52.381 19.90 15.79 0.00 4.30
712 717 1.547372 GTAGAAAGGTACGTGCCCTCA 59.453 52.381 19.90 5.02 0.00 3.86
713 718 0.608640 AGAAAGGTACGTGCCCTCAG 59.391 55.000 19.90 0.00 0.00 3.35
714 719 1.003718 AAAGGTACGTGCCCTCAGC 60.004 57.895 19.90 0.00 44.14 4.26
895 910 2.287915 GTGCATTTATACGCTCCCACAG 59.712 50.000 0.00 0.00 0.00 3.66
919 934 3.845860 TCCTCACACTTCCTGTAACTCT 58.154 45.455 0.00 0.00 0.00 3.24
924 939 2.229302 ACACTTCCTGTAACTCTCGCTC 59.771 50.000 0.00 0.00 0.00 5.03
938 953 2.493973 GCTCTCAGCTGACTCCCG 59.506 66.667 13.74 2.51 38.45 5.14
1073 1099 4.699522 GGTGACGCCCGCTCCTTT 62.700 66.667 0.00 0.00 0.00 3.11
1074 1100 2.668550 GTGACGCCCGCTCCTTTT 60.669 61.111 0.00 0.00 0.00 2.27
1126 1153 5.333299 TCTGATTGCTTGGGAATTGAATG 57.667 39.130 0.00 0.00 0.00 2.67
1130 1157 0.178767 GCTTGGGAATTGAATGGGGC 59.821 55.000 0.00 0.00 0.00 5.80
1132 1159 0.117943 TTGGGAATTGAATGGGGCCA 59.882 50.000 4.39 0.00 0.00 5.36
1135 1162 1.499368 GGAATTGAATGGGGCCATGT 58.501 50.000 4.39 0.00 36.68 3.21
1136 1163 2.676748 GGAATTGAATGGGGCCATGTA 58.323 47.619 4.39 0.00 36.68 2.29
1172 1244 4.463539 TGTAGTTGAACCCGATTAGCTGTA 59.536 41.667 0.00 0.00 0.00 2.74
1177 1498 4.018490 TGAACCCGATTAGCTGTACTGTA 58.982 43.478 0.00 0.00 0.00 2.74
1203 1524 3.701205 AACATATGCTGATATGCCCGA 57.299 42.857 1.58 0.00 43.78 5.14
1205 1526 3.338249 ACATATGCTGATATGCCCGAAC 58.662 45.455 1.58 0.00 43.78 3.95
1206 1527 3.008375 ACATATGCTGATATGCCCGAACT 59.992 43.478 1.58 0.00 43.78 3.01
1207 1528 2.175878 ATGCTGATATGCCCGAACTC 57.824 50.000 0.00 0.00 0.00 3.01
1208 1529 0.106708 TGCTGATATGCCCGAACTCC 59.893 55.000 0.00 0.00 0.00 3.85
1209 1530 0.106708 GCTGATATGCCCGAACTCCA 59.893 55.000 0.00 0.00 0.00 3.86
1210 1531 1.271054 GCTGATATGCCCGAACTCCAT 60.271 52.381 0.00 0.00 0.00 3.41
1211 1532 2.420642 CTGATATGCCCGAACTCCATG 58.579 52.381 0.00 0.00 0.00 3.66
1212 1533 1.072173 TGATATGCCCGAACTCCATGG 59.928 52.381 4.97 4.97 0.00 3.66
1213 1534 1.347707 GATATGCCCGAACTCCATGGA 59.652 52.381 15.27 15.27 0.00 3.41
1224 1545 4.024893 CGAACTCCATGGAAATTACATCGG 60.025 45.833 17.00 2.19 0.00 4.18
1230 1556 6.053005 TCCATGGAAATTACATCGGACTAAC 58.947 40.000 13.46 0.00 0.00 2.34
1238 1564 6.579491 ATTACATCGGACTAACGTTTTAGC 57.421 37.500 5.91 0.00 38.71 3.09
1239 1565 3.916761 ACATCGGACTAACGTTTTAGCA 58.083 40.909 5.91 0.00 38.71 3.49
1243 1569 5.731599 TCGGACTAACGTTTTAGCAAAAA 57.268 34.783 5.91 0.00 38.71 1.94
1246 1572 5.341196 CGGACTAACGTTTTAGCAAAAATGG 59.659 40.000 5.91 0.00 43.15 3.16
1259 1585 3.574614 CAAAAATGGTTGCTTCGGTAGG 58.425 45.455 0.00 0.00 0.00 3.18
1260 1586 1.173913 AAATGGTTGCTTCGGTAGGC 58.826 50.000 0.00 0.00 0.00 3.93
1261 1587 1.024579 AATGGTTGCTTCGGTAGGCG 61.025 55.000 0.00 0.00 0.00 5.52
1262 1588 2.818274 GGTTGCTTCGGTAGGCGG 60.818 66.667 0.00 0.00 0.00 6.13
1263 1589 2.047560 GTTGCTTCGGTAGGCGGT 60.048 61.111 0.00 0.00 0.00 5.68
1264 1590 1.216178 GTTGCTTCGGTAGGCGGTA 59.784 57.895 0.00 0.00 0.00 4.02
1265 1591 0.804933 GTTGCTTCGGTAGGCGGTAG 60.805 60.000 0.00 0.00 0.00 3.18
1266 1592 1.252904 TTGCTTCGGTAGGCGGTAGT 61.253 55.000 0.00 0.00 0.00 2.73
1267 1593 1.226888 GCTTCGGTAGGCGGTAGTG 60.227 63.158 0.00 0.00 0.00 2.74
1317 1643 6.155049 TGAAGTGTCTGAGAATGGTATGATGA 59.845 38.462 0.00 0.00 0.00 2.92
1323 1649 6.867816 GTCTGAGAATGGTATGATGACATCTC 59.132 42.308 16.25 4.05 37.87 2.75
1354 1680 5.046520 GGGAACATGAACTGTACCTTAGAGT 60.047 44.000 0.00 0.00 36.98 3.24
1355 1681 5.869888 GGAACATGAACTGTACCTTAGAGTG 59.130 44.000 0.00 0.00 36.98 3.51
1356 1682 5.407407 ACATGAACTGTACCTTAGAGTGG 57.593 43.478 0.00 0.00 35.91 4.00
1364 1690 6.021030 ACTGTACCTTAGAGTGGGTGAATTA 58.979 40.000 0.00 0.00 37.07 1.40
1518 1852 3.282021 TGGATCTACTTTCAAGCCATGC 58.718 45.455 0.00 0.00 0.00 4.06
1523 1857 0.823356 ACTTTCAAGCCATGCGGTGT 60.823 50.000 0.00 0.00 33.28 4.16
1524 1858 0.387622 CTTTCAAGCCATGCGGTGTG 60.388 55.000 0.00 0.00 33.28 3.82
1525 1859 1.804396 TTTCAAGCCATGCGGTGTGG 61.804 55.000 0.00 0.00 39.80 4.17
1574 1908 8.467598 GGTGAGTTTTATTCCCTCTTATTTTCC 58.532 37.037 0.00 0.00 0.00 3.13
1653 1988 0.318762 AGGTTGGACGCTCTTCAGTC 59.681 55.000 0.00 0.00 36.70 3.51
1701 2036 3.564225 CACCACAAAAACAGTACTCTCCC 59.436 47.826 0.00 0.00 0.00 4.30
1717 2052 0.108585 TCCCAAGACACCAGCAGTTC 59.891 55.000 0.00 0.00 0.00 3.01
1734 2069 3.519510 CAGTTCAATCAGGGGAGGAAGTA 59.480 47.826 0.00 0.00 0.00 2.24
1831 2166 3.264193 TGTTGACTGCTTATCATCCAGGT 59.736 43.478 0.00 0.00 0.00 4.00
1833 2168 3.378512 TGACTGCTTATCATCCAGGTCT 58.621 45.455 0.00 0.00 0.00 3.85
1836 2171 4.551671 ACTGCTTATCATCCAGGTCTAGT 58.448 43.478 0.00 0.00 0.00 2.57
1859 2194 1.698506 AGATTGTTTCACCCGGCAAA 58.301 45.000 0.00 0.00 0.00 3.68
1863 2198 0.387202 TGTTTCACCCGGCAAACATG 59.613 50.000 16.43 0.00 37.54 3.21
1924 2259 2.241176 CTGGCAGGGTGGGATTAGTTTA 59.759 50.000 6.61 0.00 0.00 2.01
1933 2268 4.142752 GGTGGGATTAGTTTAGTCGCAAAC 60.143 45.833 1.08 0.00 38.65 2.93
1935 2270 3.376234 GGGATTAGTTTAGTCGCAAACCC 59.624 47.826 0.00 0.00 38.86 4.11
1940 2275 3.018149 AGTTTAGTCGCAAACCCAACAA 58.982 40.909 4.23 0.00 38.86 2.83
1946 2281 0.249826 CGCAAACCCAACAAGCCAAT 60.250 50.000 0.00 0.00 0.00 3.16
2001 2338 1.529226 TTTCCGATGCAACATTCCGT 58.471 45.000 0.00 0.00 0.00 4.69
2028 2365 8.375506 TGCTAGTATTCCGATATTTTGATCCTT 58.624 33.333 0.00 0.00 0.00 3.36
2054 2391 3.938963 CGGTTCAGTTACTAATGTGGCAT 59.061 43.478 0.00 0.00 0.00 4.40
2079 2416 5.177327 GGTACATTTTTGCCAACAGATTGTG 59.823 40.000 0.00 0.00 33.60 3.33
2109 2446 1.228154 AAACCACCCTCAGTTCCGC 60.228 57.895 0.00 0.00 0.00 5.54
2130 2467 0.897621 TCACAGTGATGACCGCAGAT 59.102 50.000 0.00 0.00 0.00 2.90
2133 2470 1.410517 ACAGTGATGACCGCAGATAGG 59.589 52.381 0.00 0.00 0.00 2.57
2139 2476 0.178068 TGACCGCAGATAGGAAAGCC 59.822 55.000 0.00 0.00 0.00 4.35
2181 2518 7.819415 TCTGTATTTCCTCACTTGATAACACAG 59.181 37.037 0.00 0.00 0.00 3.66
2278 2615 5.468072 AGCAGTAGCACATTTCTGTATATGC 59.532 40.000 0.00 0.00 45.49 3.14
2289 2626 7.276218 ACATTTCTGTATATGCATTTGTGTTGC 59.724 33.333 3.54 0.00 35.73 4.17
2423 2760 6.560003 ACACAGGTTGGTATCTTCATCATA 57.440 37.500 0.00 0.00 0.00 2.15
2578 2917 9.777008 ATCAGGAAATTATTAAAGGTTTACCCA 57.223 29.630 0.00 0.00 36.42 4.51
2782 3133 6.763610 AGAACTTCAGGTTTTCTTGACTACTG 59.236 38.462 0.00 0.00 38.41 2.74
3015 3374 7.581213 TGTTATGAACTCATTTCCTTTGTGT 57.419 32.000 0.00 0.00 37.76 3.72
3234 3593 1.501582 AGACTCAATAGCCCCCACTC 58.498 55.000 0.00 0.00 0.00 3.51
3291 3650 6.655003 TCCATTTTCTGTAGCAAAGGAAGTAG 59.345 38.462 0.00 0.00 0.00 2.57
3313 3672 8.897752 AGTAGATTTGTCAAAATATTCTGCCTC 58.102 33.333 1.31 0.00 36.10 4.70
3314 3673 7.951347 AGATTTGTCAAAATATTCTGCCTCT 57.049 32.000 1.31 0.00 36.10 3.69
3316 3675 9.466497 AGATTTGTCAAAATATTCTGCCTCTAA 57.534 29.630 1.31 0.00 36.10 2.10
3317 3676 9.727627 GATTTGTCAAAATATTCTGCCTCTAAG 57.272 33.333 1.31 0.00 36.10 2.18
3318 3677 7.630242 TTGTCAAAATATTCTGCCTCTAAGG 57.370 36.000 0.00 0.00 38.80 2.69
3492 3856 6.895782 ACATCTTATAATTTGGAACGGAGGA 58.104 36.000 0.00 0.00 0.00 3.71
3713 4077 6.511767 GCTTGTAATGACTGGATCAATAACCG 60.512 42.308 0.00 0.00 41.93 4.44
3716 4080 7.106890 TGTAATGACTGGATCAATAACCGAAA 58.893 34.615 0.00 0.00 41.93 3.46
3958 4324 0.694771 AAGGATTGTCAGAGGCTGCA 59.305 50.000 0.50 0.00 0.00 4.41
4075 4441 2.098117 GCACCTGCACTAAAGGCATAAG 59.902 50.000 0.00 0.00 41.06 1.73
4087 4453 5.649782 AAAGGCATAAGAAATGTGTGGAG 57.350 39.130 0.00 0.00 0.00 3.86
4265 4631 9.097257 GGATTAAATTATCTATCTGCAGAGAGC 57.903 37.037 29.46 13.54 45.96 4.09
4266 4632 9.874205 GATTAAATTATCTATCTGCAGAGAGCT 57.126 33.333 29.46 23.64 45.94 4.09
4414 4780 6.690530 CCATGTTGTTGGATCAAATTACTGT 58.309 36.000 0.00 0.00 39.25 3.55
4501 4867 7.628769 TGCATCAATCTATAAGTTGCTCAAA 57.371 32.000 0.00 0.00 0.00 2.69
4584 4950 6.148315 CACTGCAGATAGACAATCTTGTGAAA 59.852 38.462 23.35 0.00 42.62 2.69
4641 5007 1.588239 TGATGGGACTGCCTGAGAAT 58.412 50.000 0.00 0.00 0.00 2.40
4703 5069 2.760092 TGCCTTTGTTGTGCTCTTTCTT 59.240 40.909 0.00 0.00 0.00 2.52
4830 5196 6.154534 TGTGCTGGTGTAGTATTTAGAGATGT 59.845 38.462 0.00 0.00 0.00 3.06
4856 5222 7.174772 TGCAACAATTAGCAGTTGAATAAGAGA 59.825 33.333 9.81 0.00 46.01 3.10
4857 5223 7.695618 GCAACAATTAGCAGTTGAATAAGAGAG 59.304 37.037 9.81 0.00 46.01 3.20
5100 5467 8.823220 ATCCTAAACTTTACCACAATAATGCT 57.177 30.769 0.00 0.00 0.00 3.79
5104 5471 9.988350 CTAAACTTTACCACAATAATGCTACTG 57.012 33.333 0.00 0.00 0.00 2.74
5112 5479 5.178061 CACAATAATGCTACTGACTGGTCA 58.822 41.667 3.34 3.34 38.06 4.02
5242 5609 2.481952 GCTCCAGCAGTTAGTTCTGTTG 59.518 50.000 0.00 4.11 43.09 3.33
5259 5626 3.164268 TGTTGATGTAAATGGGCTTGCT 58.836 40.909 0.00 0.00 0.00 3.91
5281 5648 1.111277 AAGGTTGACTTTGTGTGGCC 58.889 50.000 0.00 0.00 35.35 5.36
5282 5649 0.755327 AGGTTGACTTTGTGTGGCCC 60.755 55.000 0.00 0.00 0.00 5.80
5283 5650 1.358759 GTTGACTTTGTGTGGCCCG 59.641 57.895 0.00 0.00 0.00 6.13
5284 5651 1.077357 TTGACTTTGTGTGGCCCGT 60.077 52.632 0.00 0.00 0.00 5.28
5285 5652 0.180642 TTGACTTTGTGTGGCCCGTA 59.819 50.000 0.00 0.00 0.00 4.02
5297 5664 1.735360 GCCCGTACCGTATGCAGTA 59.265 57.895 0.00 0.00 0.00 2.74
5346 5728 9.195411 GAGAATTGCTTGTGTTCATTTGATTTA 57.805 29.630 0.00 0.00 0.00 1.40
5394 5776 0.826715 CATCGAAAGAGGAGCCCAGA 59.173 55.000 0.00 0.00 46.52 3.86
5548 5930 8.233190 GTCATGAACTCTGAACTTCTAAATTGG 58.767 37.037 0.00 0.00 0.00 3.16
5586 5968 5.104693 TGGTCAGGTTTCAGTAGTTCTTCAA 60.105 40.000 0.00 0.00 0.00 2.69
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.251040 TCGCTTTTCGATTCTGACTCG 58.749 47.619 10.72 10.72 43.16 4.18
10 11 2.031769 TCAACTACTCGTCGCTTTTCGA 60.032 45.455 0.00 0.00 46.29 3.71
11 12 2.313234 TCAACTACTCGTCGCTTTTCG 58.687 47.619 0.00 0.00 40.15 3.46
12 13 4.167268 AGATCAACTACTCGTCGCTTTTC 58.833 43.478 0.00 0.00 0.00 2.29
13 14 4.175787 AGATCAACTACTCGTCGCTTTT 57.824 40.909 0.00 0.00 0.00 2.27
14 15 3.851976 AGATCAACTACTCGTCGCTTT 57.148 42.857 0.00 0.00 0.00 3.51
15 16 3.851976 AAGATCAACTACTCGTCGCTT 57.148 42.857 0.00 0.00 0.00 4.68
16 17 3.851976 AAAGATCAACTACTCGTCGCT 57.148 42.857 0.00 0.00 0.00 4.93
17 18 4.167268 AGAAAAGATCAACTACTCGTCGC 58.833 43.478 0.00 0.00 0.00 5.19
18 19 6.692232 AAAGAAAAGATCAACTACTCGTCG 57.308 37.500 0.00 0.00 0.00 5.12
20 21 9.930693 AGATAAAAGAAAAGATCAACTACTCGT 57.069 29.630 0.00 0.00 0.00 4.18
27 28 9.530129 CGTACACAGATAAAAGAAAAGATCAAC 57.470 33.333 0.00 0.00 0.00 3.18
28 29 8.227791 GCGTACACAGATAAAAGAAAAGATCAA 58.772 33.333 0.00 0.00 0.00 2.57
29 30 7.386573 TGCGTACACAGATAAAAGAAAAGATCA 59.613 33.333 0.00 0.00 0.00 2.92
30 31 7.739295 TGCGTACACAGATAAAAGAAAAGATC 58.261 34.615 0.00 0.00 0.00 2.75
31 32 7.667043 TGCGTACACAGATAAAAGAAAAGAT 57.333 32.000 0.00 0.00 0.00 2.40
32 33 7.439955 TCTTGCGTACACAGATAAAAGAAAAGA 59.560 33.333 0.00 0.00 0.00 2.52
33 34 7.572759 TCTTGCGTACACAGATAAAAGAAAAG 58.427 34.615 0.00 0.00 0.00 2.27
34 35 7.485418 TCTTGCGTACACAGATAAAAGAAAA 57.515 32.000 0.00 0.00 0.00 2.29
35 36 7.225931 AGTTCTTGCGTACACAGATAAAAGAAA 59.774 33.333 0.00 0.00 35.02 2.52
36 37 6.704493 AGTTCTTGCGTACACAGATAAAAGAA 59.296 34.615 0.00 0.00 31.79 2.52
37 38 6.220930 AGTTCTTGCGTACACAGATAAAAGA 58.779 36.000 0.00 0.00 0.00 2.52
38 39 6.467723 AGTTCTTGCGTACACAGATAAAAG 57.532 37.500 0.00 0.00 0.00 2.27
39 40 8.033038 AGATAGTTCTTGCGTACACAGATAAAA 58.967 33.333 0.00 0.00 0.00 1.52
40 41 7.544622 AGATAGTTCTTGCGTACACAGATAAA 58.455 34.615 0.00 0.00 0.00 1.40
41 42 7.096884 AGATAGTTCTTGCGTACACAGATAA 57.903 36.000 0.00 0.00 0.00 1.75
42 43 6.694877 AGATAGTTCTTGCGTACACAGATA 57.305 37.500 0.00 0.00 0.00 1.98
43 44 5.584253 AGATAGTTCTTGCGTACACAGAT 57.416 39.130 0.00 0.00 0.00 2.90
44 45 6.095021 ACATAGATAGTTCTTGCGTACACAGA 59.905 38.462 0.00 0.00 33.17 3.41
45 46 6.266323 ACATAGATAGTTCTTGCGTACACAG 58.734 40.000 0.00 0.00 33.17 3.66
46 47 6.203808 ACATAGATAGTTCTTGCGTACACA 57.796 37.500 0.00 0.00 33.17 3.72
47 48 8.798748 AATACATAGATAGTTCTTGCGTACAC 57.201 34.615 0.00 0.00 33.17 2.90
48 49 8.847196 AGAATACATAGATAGTTCTTGCGTACA 58.153 33.333 0.00 0.00 33.17 2.90
49 50 9.680315 AAGAATACATAGATAGTTCTTGCGTAC 57.320 33.333 0.00 0.00 37.64 3.67
51 52 9.601217 AAAAGAATACATAGATAGTTCTTGCGT 57.399 29.630 0.00 0.00 38.66 5.24
111 112 4.699522 ACCTTCACCGCCGGCTTC 62.700 66.667 26.68 0.00 0.00 3.86
112 113 4.265056 AACCTTCACCGCCGGCTT 62.265 61.111 26.68 8.48 0.00 4.35
115 116 3.353836 CACAACCTTCACCGCCGG 61.354 66.667 0.00 0.00 0.00 6.13
116 117 4.025401 GCACAACCTTCACCGCCG 62.025 66.667 0.00 0.00 0.00 6.46
117 118 2.904866 TGCACAACCTTCACCGCC 60.905 61.111 0.00 0.00 0.00 6.13
118 119 2.331451 GTGCACAACCTTCACCGC 59.669 61.111 13.17 0.00 0.00 5.68
119 120 2.631428 CGTGCACAACCTTCACCG 59.369 61.111 18.64 0.00 0.00 4.94
120 121 2.331451 GCGTGCACAACCTTCACC 59.669 61.111 18.64 0.00 0.00 4.02
121 122 2.052237 CGCGTGCACAACCTTCAC 60.052 61.111 18.64 0.00 0.00 3.18
122 123 3.947841 GCGCGTGCACAACCTTCA 61.948 61.111 17.66 0.00 42.15 3.02
133 134 4.544689 CTCTCCTCTCCGCGCGTG 62.545 72.222 29.95 20.62 0.00 5.34
134 135 4.779966 TCTCTCCTCTCCGCGCGT 62.780 66.667 29.95 0.00 0.00 6.01
135 136 3.947841 CTCTCTCCTCTCCGCGCG 61.948 72.222 25.67 25.67 0.00 6.86
136 137 3.591835 CCTCTCTCCTCTCCGCGC 61.592 72.222 0.00 0.00 0.00 6.86
137 138 2.904866 CCCTCTCTCCTCTCCGCG 60.905 72.222 0.00 0.00 0.00 6.46
138 139 3.223589 GCCCTCTCTCCTCTCCGC 61.224 72.222 0.00 0.00 0.00 5.54
139 140 2.904866 CGCCCTCTCTCCTCTCCG 60.905 72.222 0.00 0.00 0.00 4.63
140 141 3.223589 GCGCCCTCTCTCCTCTCC 61.224 72.222 0.00 0.00 0.00 3.71
141 142 3.591835 CGCGCCCTCTCTCCTCTC 61.592 72.222 0.00 0.00 0.00 3.20
157 158 4.734920 ACAAAACGGATGCGCGCG 62.735 61.111 28.44 28.44 0.00 6.86
158 159 3.165318 CACAAAACGGATGCGCGC 61.165 61.111 27.26 27.26 0.00 6.86
159 160 1.792057 GACACAAAACGGATGCGCG 60.792 57.895 6.51 0.00 0.00 6.86
160 161 1.442017 GGACACAAAACGGATGCGC 60.442 57.895 6.51 0.00 0.00 6.09
161 162 1.154488 CGGACACAAAACGGATGCG 60.154 57.895 4.58 4.58 0.00 4.73
162 163 1.442017 GCGGACACAAAACGGATGC 60.442 57.895 0.00 0.00 0.00 3.91
163 164 1.154488 CGCGGACACAAAACGGATG 60.154 57.895 0.00 0.00 0.00 3.51
164 165 2.961669 GCGCGGACACAAAACGGAT 61.962 57.895 8.83 0.00 0.00 4.18
165 166 3.641986 GCGCGGACACAAAACGGA 61.642 61.111 8.83 0.00 0.00 4.69
166 167 4.676586 GGCGCGGACACAAAACGG 62.677 66.667 8.83 0.00 0.00 4.44
168 169 3.641986 TCGGCGCGGACACAAAAC 61.642 61.111 14.27 0.00 0.00 2.43
169 170 3.641986 GTCGGCGCGGACACAAAA 61.642 61.111 34.74 4.76 36.91 2.44
180 181 4.520846 GCAGGATTTGCGTCGGCG 62.521 66.667 4.29 4.29 44.09 6.46
188 189 3.004862 GCCCATTTTTGAGCAGGATTTG 58.995 45.455 0.00 0.00 0.00 2.32
189 190 2.026915 GGCCCATTTTTGAGCAGGATTT 60.027 45.455 0.00 0.00 0.00 2.17
190 191 1.556451 GGCCCATTTTTGAGCAGGATT 59.444 47.619 0.00 0.00 0.00 3.01
191 192 1.197812 GGCCCATTTTTGAGCAGGAT 58.802 50.000 0.00 0.00 0.00 3.24
192 193 1.250154 CGGCCCATTTTTGAGCAGGA 61.250 55.000 0.00 0.00 0.00 3.86
193 194 1.216178 CGGCCCATTTTTGAGCAGG 59.784 57.895 0.00 0.00 0.00 4.85
194 195 0.171903 CTCGGCCCATTTTTGAGCAG 59.828 55.000 0.00 0.00 0.00 4.24
195 196 0.251121 TCTCGGCCCATTTTTGAGCA 60.251 50.000 0.00 0.00 0.00 4.26
196 197 0.887933 TTCTCGGCCCATTTTTGAGC 59.112 50.000 0.00 0.00 0.00 4.26
197 198 2.159198 CCATTCTCGGCCCATTTTTGAG 60.159 50.000 0.00 0.00 0.00 3.02
198 199 1.824230 CCATTCTCGGCCCATTTTTGA 59.176 47.619 0.00 0.00 0.00 2.69
199 200 1.134729 CCCATTCTCGGCCCATTTTTG 60.135 52.381 0.00 0.00 0.00 2.44
200 201 1.194218 CCCATTCTCGGCCCATTTTT 58.806 50.000 0.00 0.00 0.00 1.94
201 202 0.041090 ACCCATTCTCGGCCCATTTT 59.959 50.000 0.00 0.00 0.00 1.82
202 203 0.395724 GACCCATTCTCGGCCCATTT 60.396 55.000 0.00 0.00 0.00 2.32
203 204 1.227383 GACCCATTCTCGGCCCATT 59.773 57.895 0.00 0.00 0.00 3.16
204 205 2.919043 GACCCATTCTCGGCCCAT 59.081 61.111 0.00 0.00 0.00 4.00
205 206 3.781307 CGACCCATTCTCGGCCCA 61.781 66.667 0.00 0.00 0.00 5.36
206 207 4.547367 CCGACCCATTCTCGGCCC 62.547 72.222 0.00 0.00 44.04 5.80
210 211 1.794222 GTTTGCCGACCCATTCTCG 59.206 57.895 0.00 0.00 0.00 4.04
211 212 1.644786 CCGTTTGCCGACCCATTCTC 61.645 60.000 0.00 0.00 39.56 2.87
212 213 1.674322 CCGTTTGCCGACCCATTCT 60.674 57.895 0.00 0.00 39.56 2.40
213 214 1.673009 TCCGTTTGCCGACCCATTC 60.673 57.895 0.00 0.00 39.56 2.67
214 215 1.969589 GTCCGTTTGCCGACCCATT 60.970 57.895 0.00 0.00 39.56 3.16
215 216 2.359478 GTCCGTTTGCCGACCCAT 60.359 61.111 0.00 0.00 39.56 4.00
216 217 2.888464 TTTGTCCGTTTGCCGACCCA 62.888 55.000 0.00 0.00 39.56 4.51
217 218 1.726533 TTTTGTCCGTTTGCCGACCC 61.727 55.000 0.00 0.00 39.56 4.46
218 219 0.317519 CTTTTGTCCGTTTGCCGACC 60.318 55.000 0.00 0.00 39.56 4.79
219 220 0.933047 GCTTTTGTCCGTTTGCCGAC 60.933 55.000 0.00 0.00 39.56 4.79
220 221 1.357334 GCTTTTGTCCGTTTGCCGA 59.643 52.632 0.00 0.00 39.56 5.54
221 222 0.934436 CTGCTTTTGTCCGTTTGCCG 60.934 55.000 0.00 0.00 0.00 5.69
222 223 0.383949 TCTGCTTTTGTCCGTTTGCC 59.616 50.000 0.00 0.00 0.00 4.52
223 224 1.477105 GTCTGCTTTTGTCCGTTTGC 58.523 50.000 0.00 0.00 0.00 3.68
224 225 1.741993 CGTCTGCTTTTGTCCGTTTG 58.258 50.000 0.00 0.00 0.00 2.93
225 226 0.028902 GCGTCTGCTTTTGTCCGTTT 59.971 50.000 0.00 0.00 38.39 3.60
226 227 1.647084 GCGTCTGCTTTTGTCCGTT 59.353 52.632 0.00 0.00 38.39 4.44
227 228 2.594962 CGCGTCTGCTTTTGTCCGT 61.595 57.895 0.00 0.00 39.65 4.69
228 229 2.170985 CGCGTCTGCTTTTGTCCG 59.829 61.111 0.00 0.00 39.65 4.79
229 230 2.127232 GCGCGTCTGCTTTTGTCC 60.127 61.111 8.43 0.00 39.65 4.02
230 231 0.790866 GATGCGCGTCTGCTTTTGTC 60.791 55.000 22.31 0.00 39.65 3.18
231 232 1.207593 GATGCGCGTCTGCTTTTGT 59.792 52.632 22.31 0.00 39.65 2.83
232 233 1.512734 GGATGCGCGTCTGCTTTTG 60.513 57.895 27.56 0.00 39.65 2.44
233 234 2.870372 GGATGCGCGTCTGCTTTT 59.130 55.556 27.56 0.00 39.65 2.27
234 235 3.490759 CGGATGCGCGTCTGCTTT 61.491 61.111 27.56 0.00 39.65 3.51
235 236 4.742201 ACGGATGCGCGTCTGCTT 62.742 61.111 33.18 16.05 39.65 3.91
236 237 4.742201 AACGGATGCGCGTCTGCT 62.742 61.111 33.18 22.02 39.65 4.24
237 238 3.788766 AAACGGATGCGCGTCTGC 61.789 61.111 33.18 15.89 37.91 4.26
238 239 2.096406 CAAACGGATGCGCGTCTG 59.904 61.111 31.97 31.97 0.00 3.51
239 240 3.118454 CCAAACGGATGCGCGTCT 61.118 61.111 27.56 7.59 0.00 4.18
240 241 4.160635 CCCAAACGGATGCGCGTC 62.161 66.667 21.53 21.53 0.00 5.19
242 243 4.160635 GACCCAAACGGATGCGCG 62.161 66.667 6.51 0.00 34.64 6.86
243 244 4.160635 CGACCCAAACGGATGCGC 62.161 66.667 6.51 0.00 34.64 6.09
251 252 4.676586 CAACGCGCCGACCCAAAC 62.677 66.667 5.73 0.00 0.00 2.93
262 263 1.641123 ATAAAAGACGGCCCAACGCG 61.641 55.000 3.53 3.53 38.94 6.01
263 264 0.179174 CATAAAAGACGGCCCAACGC 60.179 55.000 0.00 0.00 37.37 4.84
264 265 1.129811 GACATAAAAGACGGCCCAACG 59.870 52.381 0.00 0.00 40.31 4.10
265 266 1.471287 GGACATAAAAGACGGCCCAAC 59.529 52.381 0.00 0.00 0.00 3.77
266 267 1.074084 TGGACATAAAAGACGGCCCAA 59.926 47.619 0.00 0.00 0.00 4.12
267 268 0.693622 TGGACATAAAAGACGGCCCA 59.306 50.000 0.00 0.00 0.00 5.36
268 269 1.092348 GTGGACATAAAAGACGGCCC 58.908 55.000 0.00 0.00 0.00 5.80
269 270 1.467342 GTGTGGACATAAAAGACGGCC 59.533 52.381 0.00 0.00 0.00 6.13
270 271 1.467342 GGTGTGGACATAAAAGACGGC 59.533 52.381 0.00 0.00 0.00 5.68
271 272 2.773487 TGGTGTGGACATAAAAGACGG 58.227 47.619 0.00 0.00 0.00 4.79
272 273 4.695455 AGATTGGTGTGGACATAAAAGACG 59.305 41.667 0.00 0.00 0.00 4.18
273 274 7.681939 TTAGATTGGTGTGGACATAAAAGAC 57.318 36.000 0.00 0.00 0.00 3.01
274 275 8.877864 ATTTAGATTGGTGTGGACATAAAAGA 57.122 30.769 0.00 0.00 0.00 2.52
276 277 9.967451 TCTATTTAGATTGGTGTGGACATAAAA 57.033 29.630 0.00 0.00 0.00 1.52
277 278 9.391006 GTCTATTTAGATTGGTGTGGACATAAA 57.609 33.333 0.00 0.00 34.39 1.40
278 279 7.709182 CGTCTATTTAGATTGGTGTGGACATAA 59.291 37.037 0.00 0.00 34.39 1.90
279 280 7.207383 CGTCTATTTAGATTGGTGTGGACATA 58.793 38.462 0.00 0.00 34.39 2.29
280 281 6.049149 CGTCTATTTAGATTGGTGTGGACAT 58.951 40.000 0.00 0.00 34.39 3.06
281 282 5.416083 CGTCTATTTAGATTGGTGTGGACA 58.584 41.667 0.00 0.00 34.39 4.02
282 283 4.270325 GCGTCTATTTAGATTGGTGTGGAC 59.730 45.833 0.00 0.00 34.39 4.02
283 284 4.439057 GCGTCTATTTAGATTGGTGTGGA 58.561 43.478 0.00 0.00 34.39 4.02
284 285 3.245284 CGCGTCTATTTAGATTGGTGTGG 59.755 47.826 0.00 0.00 34.39 4.17
285 286 3.245284 CCGCGTCTATTTAGATTGGTGTG 59.755 47.826 4.92 0.00 34.39 3.82
286 287 3.454375 CCGCGTCTATTTAGATTGGTGT 58.546 45.455 4.92 0.00 34.39 4.16
287 288 2.800544 CCCGCGTCTATTTAGATTGGTG 59.199 50.000 4.92 0.00 34.39 4.17
288 289 2.805657 GCCCGCGTCTATTTAGATTGGT 60.806 50.000 4.92 0.00 34.39 3.67
289 290 1.798813 GCCCGCGTCTATTTAGATTGG 59.201 52.381 4.92 0.00 34.39 3.16
290 291 1.455786 CGCCCGCGTCTATTTAGATTG 59.544 52.381 4.92 0.00 34.39 2.67
291 292 1.604693 CCGCCCGCGTCTATTTAGATT 60.605 52.381 4.92 0.00 37.81 2.40
292 293 0.038526 CCGCCCGCGTCTATTTAGAT 60.039 55.000 4.92 0.00 37.81 1.98
293 294 1.102809 TCCGCCCGCGTCTATTTAGA 61.103 55.000 4.92 0.00 37.81 2.10
294 295 0.938168 GTCCGCCCGCGTCTATTTAG 60.938 60.000 4.92 0.00 37.81 1.85
295 296 1.066257 GTCCGCCCGCGTCTATTTA 59.934 57.895 4.92 0.00 37.81 1.40
296 297 2.202837 GTCCGCCCGCGTCTATTT 60.203 61.111 4.92 0.00 37.81 1.40
297 298 4.564116 CGTCCGCCCGCGTCTATT 62.564 66.667 4.92 0.00 37.81 1.73
305 306 4.770874 ACCCATTTCGTCCGCCCG 62.771 66.667 0.00 0.00 0.00 6.13
306 307 2.822701 GACCCATTTCGTCCGCCC 60.823 66.667 0.00 0.00 0.00 6.13
307 308 3.192922 CGACCCATTTCGTCCGCC 61.193 66.667 0.00 0.00 34.16 6.13
308 309 3.861263 GCGACCCATTTCGTCCGC 61.861 66.667 0.00 0.00 41.26 5.54
309 310 3.192922 GGCGACCCATTTCGTCCG 61.193 66.667 0.00 0.00 41.26 4.79
321 322 1.134694 GCAACTTCAATCGGGCGAC 59.865 57.895 0.00 0.00 0.00 5.19
322 323 1.003839 AGCAACTTCAATCGGGCGA 60.004 52.632 0.00 0.00 0.00 5.54
323 324 1.021390 AGAGCAACTTCAATCGGGCG 61.021 55.000 0.00 0.00 0.00 6.13
324 325 1.168714 AAGAGCAACTTCAATCGGGC 58.831 50.000 0.00 0.00 32.91 6.13
325 326 3.372206 CACTAAGAGCAACTTCAATCGGG 59.628 47.826 0.00 0.00 39.72 5.14
326 327 3.997021 ACACTAAGAGCAACTTCAATCGG 59.003 43.478 0.00 0.00 39.72 4.18
327 328 4.092091 GGACACTAAGAGCAACTTCAATCG 59.908 45.833 0.00 0.00 39.72 3.34
328 329 4.092091 CGGACACTAAGAGCAACTTCAATC 59.908 45.833 0.00 0.00 39.72 2.67
329 330 3.997021 CGGACACTAAGAGCAACTTCAAT 59.003 43.478 0.00 0.00 39.72 2.57
330 331 3.181469 ACGGACACTAAGAGCAACTTCAA 60.181 43.478 0.00 0.00 39.72 2.69
331 332 2.364324 ACGGACACTAAGAGCAACTTCA 59.636 45.455 0.00 0.00 39.72 3.02
332 333 2.987821 GACGGACACTAAGAGCAACTTC 59.012 50.000 0.00 0.00 39.72 3.01
333 334 2.288886 GGACGGACACTAAGAGCAACTT 60.289 50.000 2.10 2.10 42.04 2.66
334 335 1.272769 GGACGGACACTAAGAGCAACT 59.727 52.381 0.00 0.00 0.00 3.16
335 336 1.711206 GGACGGACACTAAGAGCAAC 58.289 55.000 0.00 0.00 0.00 4.17
336 337 0.242825 CGGACGGACACTAAGAGCAA 59.757 55.000 0.00 0.00 0.00 3.91
337 338 1.592400 CCGGACGGACACTAAGAGCA 61.592 60.000 4.40 0.00 37.50 4.26
338 339 1.139095 CCGGACGGACACTAAGAGC 59.861 63.158 4.40 0.00 37.50 4.09
339 340 2.864114 TCCGGACGGACACTAAGAG 58.136 57.895 9.76 0.00 39.76 2.85
351 352 1.068585 ACACCTTGAACGTCCGGAC 59.931 57.895 25.28 25.28 0.00 4.79
352 353 1.068417 CACACCTTGAACGTCCGGA 59.932 57.895 0.00 0.00 0.00 5.14
353 354 1.227438 ACACACCTTGAACGTCCGG 60.227 57.895 0.00 0.00 0.00 5.14
354 355 0.808453 ACACACACCTTGAACGTCCG 60.808 55.000 0.00 0.00 0.00 4.79
355 356 0.655733 CACACACACCTTGAACGTCC 59.344 55.000 0.00 0.00 0.00 4.79
356 357 0.027586 GCACACACACCTTGAACGTC 59.972 55.000 0.00 0.00 0.00 4.34
357 358 1.701545 CGCACACACACCTTGAACGT 61.702 55.000 0.00 0.00 0.00 3.99
358 359 1.011242 CGCACACACACCTTGAACG 60.011 57.895 0.00 0.00 0.00 3.95
359 360 1.092921 TCCGCACACACACCTTGAAC 61.093 55.000 0.00 0.00 0.00 3.18
360 361 0.813610 CTCCGCACACACACCTTGAA 60.814 55.000 0.00 0.00 0.00 2.69
361 362 1.227527 CTCCGCACACACACCTTGA 60.228 57.895 0.00 0.00 0.00 3.02
362 363 2.896801 GCTCCGCACACACACCTTG 61.897 63.158 0.00 0.00 0.00 3.61
363 364 2.591715 GCTCCGCACACACACCTT 60.592 61.111 0.00 0.00 0.00 3.50
364 365 4.626081 GGCTCCGCACACACACCT 62.626 66.667 0.00 0.00 0.00 4.00
370 371 4.681978 AAGTCCGGCTCCGCACAC 62.682 66.667 5.10 0.80 38.24 3.82
371 372 3.936203 AAAGTCCGGCTCCGCACA 61.936 61.111 5.10 0.00 38.24 4.57
372 373 3.423154 CAAAGTCCGGCTCCGCAC 61.423 66.667 0.00 0.00 38.24 5.34
373 374 4.697756 CCAAAGTCCGGCTCCGCA 62.698 66.667 0.00 0.00 38.24 5.69
375 376 3.546714 AACCCAAAGTCCGGCTCCG 62.547 63.158 0.00 0.48 39.44 4.63
376 377 0.037160 TAAACCCAAAGTCCGGCTCC 59.963 55.000 0.00 0.00 0.00 4.70
377 378 1.271217 ACTAAACCCAAAGTCCGGCTC 60.271 52.381 0.00 0.00 0.00 4.70
378 379 0.769247 ACTAAACCCAAAGTCCGGCT 59.231 50.000 0.00 0.00 0.00 5.52
379 380 1.162698 GACTAAACCCAAAGTCCGGC 58.837 55.000 0.00 0.00 36.86 6.13
380 381 2.423577 CTGACTAAACCCAAAGTCCGG 58.576 52.381 0.00 0.00 41.19 5.14
381 382 2.423577 CCTGACTAAACCCAAAGTCCG 58.576 52.381 0.00 0.00 41.19 4.79
382 383 2.160205 GCCTGACTAAACCCAAAGTCC 58.840 52.381 0.00 0.00 41.19 3.85
383 384 2.858745 TGCCTGACTAAACCCAAAGTC 58.141 47.619 0.00 0.00 42.04 3.01
384 385 3.525800 ATGCCTGACTAAACCCAAAGT 57.474 42.857 0.00 0.00 0.00 2.66
385 386 3.374058 CGTATGCCTGACTAAACCCAAAG 59.626 47.826 0.00 0.00 0.00 2.77
386 387 3.244630 ACGTATGCCTGACTAAACCCAAA 60.245 43.478 0.00 0.00 0.00 3.28
387 388 2.303600 ACGTATGCCTGACTAAACCCAA 59.696 45.455 0.00 0.00 0.00 4.12
388 389 1.903860 ACGTATGCCTGACTAAACCCA 59.096 47.619 0.00 0.00 0.00 4.51
389 390 2.277084 CACGTATGCCTGACTAAACCC 58.723 52.381 0.00 0.00 0.00 4.11
390 391 1.664151 GCACGTATGCCTGACTAAACC 59.336 52.381 0.00 0.00 46.97 3.27
410 411 2.788176 CTGCGGCGTATGTGTCACG 61.788 63.158 9.37 0.00 42.24 4.35
411 412 3.081133 CTGCGGCGTATGTGTCAC 58.919 61.111 9.37 0.00 0.00 3.67
412 413 2.813474 GCTGCGGCGTATGTGTCA 60.813 61.111 9.37 0.00 0.00 3.58
413 414 2.813474 TGCTGCGGCGTATGTGTC 60.813 61.111 13.96 0.00 42.25 3.67
414 415 3.118454 GTGCTGCGGCGTATGTGT 61.118 61.111 13.96 0.00 42.25 3.72
415 416 4.208948 CGTGCTGCGGCGTATGTG 62.209 66.667 13.96 0.00 42.25 3.21
433 434 3.643978 GCGCGGCTATGCTGGAAG 61.644 66.667 8.83 0.00 35.15 3.46
511 512 2.809601 GTGACGAGCAATCGCGGT 60.810 61.111 6.13 0.00 45.49 5.68
544 546 2.933834 CAACGGGGGAGGGTTCCT 60.934 66.667 0.00 0.00 43.49 3.36
583 585 4.516195 GGGAAGCGGAGGTCGAGC 62.516 72.222 6.48 6.48 42.43 5.03
584 586 3.839432 GGGGAAGCGGAGGTCGAG 61.839 72.222 0.00 0.00 42.43 4.04
587 589 4.097361 GTGGGGGAAGCGGAGGTC 62.097 72.222 0.00 0.00 37.06 3.85
595 597 4.722700 CAGTGCGGGTGGGGGAAG 62.723 72.222 0.00 0.00 0.00 3.46
633 635 1.134729 CCTGTATGGCATTGTTTGGGC 60.135 52.381 4.78 0.00 0.00 5.36
668 673 0.249741 CTCGTGGGAACGGAACTGTT 60.250 55.000 0.00 0.00 34.02 3.16
669 674 1.366366 CTCGTGGGAACGGAACTGT 59.634 57.895 0.00 0.00 0.00 3.55
670 675 1.374252 CCTCGTGGGAACGGAACTG 60.374 63.158 0.00 0.00 37.23 3.16
671 676 3.057337 CCTCGTGGGAACGGAACT 58.943 61.111 0.00 0.00 37.23 3.01
672 677 1.880819 TAGCCTCGTGGGAACGGAAC 61.881 60.000 5.54 0.00 37.23 3.62
673 678 1.601419 CTAGCCTCGTGGGAACGGAA 61.601 60.000 5.54 0.00 37.23 4.30
674 679 2.036098 TAGCCTCGTGGGAACGGA 59.964 61.111 5.54 0.00 37.23 4.69
675 680 1.033746 TACTAGCCTCGTGGGAACGG 61.034 60.000 5.54 0.00 37.23 4.44
676 681 0.381089 CTACTAGCCTCGTGGGAACG 59.619 60.000 5.54 0.00 37.23 3.95
690 695 3.019564 GAGGGCACGTACCTTTCTACTA 58.980 50.000 11.80 0.00 38.79 1.82
691 696 1.823610 GAGGGCACGTACCTTTCTACT 59.176 52.381 11.80 0.00 38.79 2.57
692 697 1.547372 TGAGGGCACGTACCTTTCTAC 59.453 52.381 11.80 0.86 38.79 2.59
693 698 1.822990 CTGAGGGCACGTACCTTTCTA 59.177 52.381 11.80 0.68 38.79 2.10
696 701 1.003718 GCTGAGGGCACGTACCTTT 60.004 57.895 11.80 0.00 38.79 3.11
697 702 2.663196 GCTGAGGGCACGTACCTT 59.337 61.111 11.80 0.06 38.79 3.50
698 703 3.391382 GGCTGAGGGCACGTACCT 61.391 66.667 10.48 10.48 44.01 3.08
699 704 4.468689 GGGCTGAGGGCACGTACC 62.469 72.222 0.00 0.00 44.01 3.34
783 788 4.025401 GCTTGGTTGGTGGTCGCG 62.025 66.667 0.00 0.00 0.00 5.87
856 871 1.071699 CACCTCGTGGAGAAAGGGAAA 59.928 52.381 11.17 0.00 37.04 3.13
866 881 2.816689 CGTATAAATGCACCTCGTGGA 58.183 47.619 11.17 0.00 38.41 4.02
895 910 3.067833 GTTACAGGAAGTGTGAGGAAGC 58.932 50.000 0.00 0.00 40.69 3.86
902 917 2.029828 AGCGAGAGTTACAGGAAGTGTG 60.030 50.000 0.00 0.00 40.69 3.82
938 953 1.064654 GGCTGGCAAATCGAGATTGAC 59.935 52.381 15.66 13.68 0.00 3.18
1073 1099 5.014438 ACGGGATAGAAAGTAAGGGGAAAAA 59.986 40.000 0.00 0.00 0.00 1.94
1074 1100 4.537288 ACGGGATAGAAAGTAAGGGGAAAA 59.463 41.667 0.00 0.00 0.00 2.29
1077 1103 3.036091 CACGGGATAGAAAGTAAGGGGA 58.964 50.000 0.00 0.00 0.00 4.81
1079 1105 2.169769 TGCACGGGATAGAAAGTAAGGG 59.830 50.000 0.00 0.00 0.00 3.95
1080 1106 3.536956 TGCACGGGATAGAAAGTAAGG 57.463 47.619 0.00 0.00 0.00 2.69
1081 1107 3.309954 GCTTGCACGGGATAGAAAGTAAG 59.690 47.826 0.00 0.00 0.00 2.34
1082 1108 3.055385 AGCTTGCACGGGATAGAAAGTAA 60.055 43.478 0.00 0.00 0.00 2.24
1083 1109 2.500098 AGCTTGCACGGGATAGAAAGTA 59.500 45.455 0.00 0.00 0.00 2.24
1084 1110 1.279271 AGCTTGCACGGGATAGAAAGT 59.721 47.619 0.00 0.00 0.00 2.66
1085 1111 1.936547 GAGCTTGCACGGGATAGAAAG 59.063 52.381 0.00 0.00 0.00 2.62
1095 1121 4.759564 GCAATCAGAGCTTGCACG 57.240 55.556 2.44 0.00 46.44 5.34
1132 1159 4.033709 ACTACAGGTGAGAGCCAATACAT 58.966 43.478 0.00 0.00 0.00 2.29
1135 1162 4.093743 TCAACTACAGGTGAGAGCCAATA 58.906 43.478 0.00 0.00 0.00 1.90
1136 1163 2.906389 TCAACTACAGGTGAGAGCCAAT 59.094 45.455 0.00 0.00 0.00 3.16
1141 1212 2.352814 CGGGTTCAACTACAGGTGAGAG 60.353 54.545 0.00 0.00 0.00 3.20
1177 1498 7.992608 TCGGGCATATCAGCATATGTTTATTAT 59.007 33.333 4.29 0.00 42.84 1.28
1192 1513 1.072173 CCATGGAGTTCGGGCATATCA 59.928 52.381 5.56 0.00 0.00 2.15
1193 1514 1.347707 TCCATGGAGTTCGGGCATATC 59.652 52.381 11.44 0.00 0.00 1.63
1195 1516 1.208706 TTCCATGGAGTTCGGGCATA 58.791 50.000 15.53 0.00 0.00 3.14
1197 1518 0.331278 ATTTCCATGGAGTTCGGGCA 59.669 50.000 15.53 0.00 0.00 5.36
1198 1519 1.474330 AATTTCCATGGAGTTCGGGC 58.526 50.000 15.53 0.00 0.00 6.13
1199 1520 3.616219 TGTAATTTCCATGGAGTTCGGG 58.384 45.455 15.53 0.00 0.00 5.14
1200 1521 4.024893 CGATGTAATTTCCATGGAGTTCGG 60.025 45.833 15.53 0.00 0.00 4.30
1201 1522 4.024893 CCGATGTAATTTCCATGGAGTTCG 60.025 45.833 15.53 14.93 0.00 3.95
1203 1524 4.881850 GTCCGATGTAATTTCCATGGAGTT 59.118 41.667 15.53 15.82 0.00 3.01
1205 1526 4.708177 AGTCCGATGTAATTTCCATGGAG 58.292 43.478 15.53 0.00 0.00 3.86
1206 1527 4.771114 AGTCCGATGTAATTTCCATGGA 57.229 40.909 11.44 11.44 0.00 3.41
1207 1528 5.050363 CGTTAGTCCGATGTAATTTCCATGG 60.050 44.000 4.97 4.97 0.00 3.66
1208 1529 5.522460 ACGTTAGTCCGATGTAATTTCCATG 59.478 40.000 0.00 0.00 0.00 3.66
1209 1530 5.667466 ACGTTAGTCCGATGTAATTTCCAT 58.333 37.500 0.00 0.00 0.00 3.41
1210 1531 5.075858 ACGTTAGTCCGATGTAATTTCCA 57.924 39.130 0.00 0.00 0.00 3.53
1211 1532 6.413018 AAACGTTAGTCCGATGTAATTTCC 57.587 37.500 0.00 0.00 0.00 3.13
1212 1533 7.633664 GCTAAAACGTTAGTCCGATGTAATTTC 59.366 37.037 0.00 0.00 39.23 2.17
1213 1534 7.118101 TGCTAAAACGTTAGTCCGATGTAATTT 59.882 33.333 0.00 0.00 39.23 1.82
1224 1545 7.552187 CAACCATTTTTGCTAAAACGTTAGTC 58.448 34.615 8.22 0.00 39.23 2.59
1238 1564 3.574614 CCTACCGAAGCAACCATTTTTG 58.425 45.455 0.00 0.00 0.00 2.44
1239 1565 2.029380 GCCTACCGAAGCAACCATTTTT 60.029 45.455 0.00 0.00 0.00 1.94
1243 1569 1.449601 CGCCTACCGAAGCAACCAT 60.450 57.895 0.00 0.00 40.02 3.55
1246 1572 0.804933 CTACCGCCTACCGAAGCAAC 60.805 60.000 0.00 0.00 40.02 4.17
1258 1584 1.746470 AATTGCTTACCACTACCGCC 58.254 50.000 0.00 0.00 0.00 6.13
1259 1585 3.189702 TCAAAATTGCTTACCACTACCGC 59.810 43.478 0.00 0.00 0.00 5.68
1260 1586 5.365403 TTCAAAATTGCTTACCACTACCG 57.635 39.130 0.00 0.00 0.00 4.02
1261 1587 7.360017 GCAAATTCAAAATTGCTTACCACTACC 60.360 37.037 8.00 0.00 46.42 3.18
1262 1588 7.509797 GCAAATTCAAAATTGCTTACCACTAC 58.490 34.615 8.00 0.00 46.42 2.73
1263 1589 7.650834 GCAAATTCAAAATTGCTTACCACTA 57.349 32.000 8.00 0.00 46.42 2.74
1264 1590 6.544038 GCAAATTCAAAATTGCTTACCACT 57.456 33.333 8.00 0.00 46.42 4.00
1296 1622 5.664457 TGTCATCATACCATTCTCAGACAC 58.336 41.667 0.00 0.00 0.00 3.67
1317 1643 7.121759 CAGTTCATGTTCCCATTTAAGAGATGT 59.878 37.037 0.00 0.00 0.00 3.06
1323 1649 6.852664 GGTACAGTTCATGTTCCCATTTAAG 58.147 40.000 0.00 0.00 42.11 1.85
1354 1680 3.520317 ACCCGTTATGACTAATTCACCCA 59.480 43.478 0.00 0.00 36.92 4.51
1355 1681 3.875134 CACCCGTTATGACTAATTCACCC 59.125 47.826 0.00 0.00 36.92 4.61
1356 1682 3.875134 CCACCCGTTATGACTAATTCACC 59.125 47.826 0.00 0.00 36.92 4.02
1364 1690 1.652947 AAGGACCACCCGTTATGACT 58.347 50.000 0.00 0.00 40.87 3.41
1396 1723 1.070289 TGCAATTGCTGGAACAATGCA 59.930 42.857 29.37 12.49 40.12 3.96
1518 1852 1.021202 TTTTGAGCTTGACCACACCG 58.979 50.000 0.00 0.00 0.00 4.94
1523 1857 2.687935 GGAGTTGTTTTGAGCTTGACCA 59.312 45.455 0.00 0.00 0.00 4.02
1524 1858 2.952310 AGGAGTTGTTTTGAGCTTGACC 59.048 45.455 0.00 0.00 0.00 4.02
1525 1859 5.278022 CCTTAGGAGTTGTTTTGAGCTTGAC 60.278 44.000 0.00 0.00 0.00 3.18
1587 1921 5.045215 TGTGGAGTACGACAGTAAACAAAG 58.955 41.667 0.00 0.00 34.16 2.77
1632 1967 1.141053 ACTGAAGAGCGTCCAACCTTT 59.859 47.619 0.00 0.00 0.00 3.11
1653 1988 1.100510 CAATGGATGCCCTCACACAG 58.899 55.000 0.00 0.00 0.00 3.66
1701 2036 2.880268 TGATTGAACTGCTGGTGTCTTG 59.120 45.455 0.00 0.00 0.00 3.02
1717 2052 1.473434 GCGTACTTCCTCCCCTGATTG 60.473 57.143 0.00 0.00 0.00 2.67
1831 2166 4.081862 CGGGTGAAACAATCTACCACTAGA 60.082 45.833 0.00 0.00 39.98 2.43
1833 2168 3.055675 CCGGGTGAAACAATCTACCACTA 60.056 47.826 0.00 0.00 39.98 2.74
1836 2171 1.612199 GCCGGGTGAAACAATCTACCA 60.612 52.381 2.18 0.00 39.98 3.25
1859 2194 2.373335 TGTGCCCCTTGTTTACATGT 57.627 45.000 2.69 2.69 0.00 3.21
1863 2198 3.306019 CCAAGAATGTGCCCCTTGTTTAC 60.306 47.826 0.00 0.00 36.47 2.01
1924 2259 1.733526 GCTTGTTGGGTTTGCGACT 59.266 52.632 0.00 0.00 0.00 4.18
1933 2268 0.542702 AGGTGGATTGGCTTGTTGGG 60.543 55.000 0.00 0.00 0.00 4.12
1935 2270 3.573967 AGTAAAGGTGGATTGGCTTGTTG 59.426 43.478 0.00 0.00 0.00 3.33
1940 2275 2.279173 AGGAGTAAAGGTGGATTGGCT 58.721 47.619 0.00 0.00 0.00 4.75
1946 2281 3.450904 AGTGCATAGGAGTAAAGGTGGA 58.549 45.455 0.00 0.00 0.00 4.02
2001 2338 8.375506 AGGATCAAAATATCGGAATACTAGCAA 58.624 33.333 0.00 0.00 0.00 3.91
2028 2365 5.049267 GCCACATTAGTAACTGAACCGAAAA 60.049 40.000 0.00 0.00 0.00 2.29
2031 2368 3.007074 TGCCACATTAGTAACTGAACCGA 59.993 43.478 0.00 0.00 0.00 4.69
2032 2369 3.331150 TGCCACATTAGTAACTGAACCG 58.669 45.455 0.00 0.00 0.00 4.44
2054 2391 5.163364 ACAATCTGTTGGCAAAAATGTACCA 60.163 36.000 0.00 0.00 39.70 3.25
2079 2416 1.502190 GTGGTTTGCTAGAAGCCGC 59.498 57.895 0.00 0.00 41.51 6.53
2130 2467 1.053424 ACTGTTCACCGGCTTTCCTA 58.947 50.000 0.00 0.00 0.00 2.94
2133 2470 1.269051 CCAAACTGTTCACCGGCTTTC 60.269 52.381 0.00 0.00 0.00 2.62
2139 2476 2.494059 ACAGATCCAAACTGTTCACCG 58.506 47.619 0.00 0.00 44.69 4.94
2181 2518 6.104146 AGGAAGTGAAGAGAAGTTCTTACC 57.896 41.667 6.88 0.05 46.12 2.85
2278 2615 8.368060 GAGGATCAACATATGGCAACACAAATG 61.368 40.741 7.80 0.00 43.94 2.32
2390 2727 2.138596 CAACCTGTGTTGTTCCATGC 57.861 50.000 0.00 0.00 45.51 4.06
2578 2917 6.002704 AGAGATCAACAATCTTCAGTTGCTT 58.997 36.000 0.00 0.00 45.06 3.91
3170 3529 7.236847 TCAAAGAATGGGAGGACTAAGAACTTA 59.763 37.037 0.00 0.00 0.00 2.24
3291 3650 9.727627 CTTAGAGGCAGAATATTTTGACAAATC 57.272 33.333 13.91 3.46 34.29 2.17
3316 3675 3.343941 TTTACATAAAGGAGCGTGCCT 57.656 42.857 0.00 0.00 40.93 4.75
3317 3676 4.632538 AATTTACATAAAGGAGCGTGCC 57.367 40.909 0.00 0.00 0.00 5.01
3318 3677 8.455598 TTTTAAATTTACATAAAGGAGCGTGC 57.544 30.769 0.00 0.00 0.00 5.34
3419 3778 4.157472 TGTGTGTTTGCTCACTCATTTCAA 59.843 37.500 8.22 0.00 39.20 2.69
3535 3899 4.018141 TGATCCTGTTCTGAATCCCATGTT 60.018 41.667 0.00 0.00 0.00 2.71
3713 4077 2.381911 ACATGTCATGGGGAGCATTTC 58.618 47.619 17.08 0.00 33.60 2.17
3716 4080 3.889859 AATACATGTCATGGGGAGCAT 57.110 42.857 17.08 0.00 33.60 3.79
3769 4133 2.100916 GCCTTCAGCTATCTCGGTGTAA 59.899 50.000 0.00 0.00 38.99 2.41
3958 4324 7.550906 GTGAAGCTGATAGTAACTTTGGATTCT 59.449 37.037 0.00 0.00 0.00 2.40
4075 4441 4.900635 ACAACTGAACTCCACACATTTC 57.099 40.909 0.00 0.00 0.00 2.17
4265 4631 8.842358 TGTGGTAAAACTGTAAAATAGGAGAG 57.158 34.615 0.00 0.00 0.00 3.20
4414 4780 4.893608 TGTCCTCGAAGACATTCATGAAA 58.106 39.130 12.83 0.00 41.78 2.69
4501 4867 3.403038 AGTCTGCAACATTTCGCTAACT 58.597 40.909 0.00 0.00 0.00 2.24
4544 4910 4.699735 TCTGCAGTGTTGAAGAACAAGAAA 59.300 37.500 14.67 0.00 43.77 2.52
4584 4950 3.806667 GCCTGGCCAGATGCTCCT 61.807 66.667 34.91 0.00 40.92 3.69
4703 5069 4.970662 GCTTAACTCCAAAGCATCATCA 57.029 40.909 3.07 0.00 46.85 3.07
4830 5196 7.174772 TCTCTTATTCAACTGCTAATTGTTGCA 59.825 33.333 0.00 2.85 42.11 4.08
4856 5222 0.839946 ACCAAGCCACTCAGTTCACT 59.160 50.000 0.00 0.00 0.00 3.41
4857 5223 0.947244 CACCAAGCCACTCAGTTCAC 59.053 55.000 0.00 0.00 0.00 3.18
4907 5273 6.298441 TGATCTCATGACAACAATCCACTA 57.702 37.500 0.00 0.00 0.00 2.74
5064 5431 6.884836 GGTAAAGTTTAGGATCTGGTCACATT 59.115 38.462 0.00 0.00 0.00 2.71
5066 5433 5.308497 TGGTAAAGTTTAGGATCTGGTCACA 59.692 40.000 0.00 0.00 0.00 3.58
5100 5467 5.527214 CAGAAACACAATTGACCAGTCAGTA 59.473 40.000 13.59 0.00 41.13 2.74
5104 5471 4.261197 GGACAGAAACACAATTGACCAGTC 60.261 45.833 13.59 9.82 0.00 3.51
5112 5479 5.241728 GGCTAGAAAGGACAGAAACACAATT 59.758 40.000 0.00 0.00 0.00 2.32
5181 5548 9.575868 TCCAAACAACAGATGGTAACTAATTAA 57.424 29.630 0.00 0.00 35.66 1.40
5242 5609 5.770162 ACCTTATAGCAAGCCCATTTACATC 59.230 40.000 0.00 0.00 0.00 3.06
5259 5626 4.076394 GGCCACACAAAGTCAACCTTATA 58.924 43.478 0.00 0.00 31.48 0.98
5283 5650 3.376234 TGAGTCACTACTGCATACGGTAC 59.624 47.826 0.00 0.00 35.56 3.34
5284 5651 3.613030 TGAGTCACTACTGCATACGGTA 58.387 45.455 0.00 0.00 35.56 4.02
5285 5652 2.443416 TGAGTCACTACTGCATACGGT 58.557 47.619 0.00 0.00 35.56 4.83
5499 5881 2.310538 GCTTGCAGCCCCTAACATATT 58.689 47.619 0.00 0.00 34.48 1.28
5500 5882 1.986882 GCTTGCAGCCCCTAACATAT 58.013 50.000 0.00 0.00 34.48 1.78
5501 5883 3.494850 GCTTGCAGCCCCTAACATA 57.505 52.632 0.00 0.00 34.48 2.29
5502 5884 4.344237 GCTTGCAGCCCCTAACAT 57.656 55.556 0.00 0.00 34.48 2.71
5548 5930 8.573035 TGAAACCTGACCATACATTTCTAAAAC 58.427 33.333 0.00 0.00 0.00 2.43


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.