Multiple sequence alignment - TraesCS4B01G080700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G080700 chr4B 100.000 3323 0 0 1 3323 78606148 78602826 0.000000e+00 6137.0
1 TraesCS4B01G080700 chr4D 94.558 3234 127 29 117 3322 53753487 53750275 0.000000e+00 4951.0
2 TraesCS4B01G080700 chr4D 89.340 197 15 2 1 193 53755031 53754837 3.310000e-60 243.0
3 TraesCS4B01G080700 chr4A 93.515 3346 149 32 1 3322 543373604 543376905 0.000000e+00 4915.0
4 TraesCS4B01G080700 chr5D 72.643 647 129 41 1672 2295 78804876 78805497 1.590000e-38 171.0
5 TraesCS4B01G080700 chr5A 72.601 646 128 42 1672 2296 74948822 74949439 2.050000e-37 167.0
6 TraesCS4B01G080700 chr5B 72.222 630 126 44 1688 2296 88359046 88359647 7.430000e-32 148.0
7 TraesCS4B01G080700 chr5B 100.000 31 0 0 3151 3181 562495824 562495854 1.290000e-04 58.4
8 TraesCS4B01G080700 chr5B 100.000 28 0 0 3149 3176 637891849 637891876 6.000000e-03 52.8
9 TraesCS4B01G080700 chr1D 100.000 31 0 0 3151 3181 474923398 474923368 1.290000e-04 58.4
10 TraesCS4B01G080700 chr1D 100.000 28 0 0 3149 3176 298697643 298697670 6.000000e-03 52.8
11 TraesCS4B01G080700 chr6A 96.774 31 1 0 3151 3181 23423840 23423810 6.000000e-03 52.8
12 TraesCS4B01G080700 chr3B 100.000 28 0 0 3190 3217 4793099 4793126 6.000000e-03 52.8
13 TraesCS4B01G080700 chr2D 100.000 28 0 0 3149 3176 128371387 128371360 6.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G080700 chr4B 78602826 78606148 3322 True 6137 6137 100.000 1 3323 1 chr4B.!!$R1 3322
1 TraesCS4B01G080700 chr4D 53750275 53755031 4756 True 2597 4951 91.949 1 3322 2 chr4D.!!$R1 3321
2 TraesCS4B01G080700 chr4A 543373604 543376905 3301 False 4915 4915 93.515 1 3322 1 chr4A.!!$F1 3321

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
613 2052 0.324614 TGTCCTGTTGGTGCATCGAT 59.675 50.0 0.0 0.0 34.23 3.59 F
1263 2702 0.179029 CGTCGGATTATGGGGGCTTT 60.179 55.0 0.0 0.0 0.00 3.51 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1609 3048 0.038526 TCTTTGTCCGCTTCGAGTCC 60.039 55.0 0.0 0.0 0.0 3.85 R
2580 4028 0.767375 TGCAGAGCCTCTTCCAAGTT 59.233 50.0 0.0 0.0 0.0 2.66 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
29 30 3.054508 TGCCCACATGTGAATCTGTGATA 60.055 43.478 27.46 0.00 44.35 2.15
52 57 4.072131 TGGTAATCTTGGCTGAAACTGTC 58.928 43.478 0.00 0.00 0.00 3.51
55 60 3.498774 ATCTTGGCTGAAACTGTCACT 57.501 42.857 0.00 0.00 31.13 3.41
134 141 4.080299 AGGTTTTCTCAGTCCTCAGTTTGT 60.080 41.667 0.00 0.00 0.00 2.83
135 142 5.130477 AGGTTTTCTCAGTCCTCAGTTTGTA 59.870 40.000 0.00 0.00 0.00 2.41
143 150 8.495260 TCTCAGTCCTCAGTTTGTATAGATCTA 58.505 37.037 4.57 4.57 0.00 1.98
187 194 5.417894 TCGGAGCTTCTTTCTTCTATACACA 59.582 40.000 0.00 0.00 0.00 3.72
189 196 5.813157 GGAGCTTCTTTCTTCTATACACACC 59.187 44.000 0.00 0.00 0.00 4.16
193 1626 6.874134 GCTTCTTTCTTCTATACACACCTTCA 59.126 38.462 0.00 0.00 0.00 3.02
196 1629 4.713824 TCTTCTATACACACCTTCACGG 57.286 45.455 0.00 0.00 39.35 4.94
307 1743 1.798735 CGGGCAGATGCTGTTGAAG 59.201 57.895 4.59 0.00 41.70 3.02
358 1796 1.039233 AAGATGGCAAGCAATCGGGG 61.039 55.000 3.89 0.00 31.84 5.73
392 1830 1.685148 GAGGCATTGTCCAATCCCTC 58.315 55.000 12.92 12.92 45.46 4.30
569 2008 4.202141 TGTTTGTCCTGGCTTTGATTTGAG 60.202 41.667 0.00 0.00 0.00 3.02
613 2052 0.324614 TGTCCTGTTGGTGCATCGAT 59.675 50.000 0.00 0.00 34.23 3.59
654 2093 2.214376 ATCATTGAAACCGGCCTTGA 57.786 45.000 0.00 0.00 0.00 3.02
730 2169 9.166173 TCTTGGATAATTCACTATCTTGTTGTG 57.834 33.333 0.00 0.00 35.29 3.33
844 2283 2.418746 CCGTGGGTGTCCATTTCTCTAG 60.419 54.545 0.00 0.00 46.09 2.43
1231 2670 2.434336 AGCAACAGTGTTGGTAGTCTCA 59.566 45.455 33.22 0.00 0.00 3.27
1263 2702 0.179029 CGTCGGATTATGGGGGCTTT 60.179 55.000 0.00 0.00 0.00 3.51
1326 2765 3.822735 CACTTGACCTGAACATGGTTCAT 59.177 43.478 11.76 0.00 38.03 2.57
1399 2838 2.390599 GGCGATTCAAGCTGCGACA 61.391 57.895 0.00 0.00 34.52 4.35
1423 2862 1.550327 TGGAGACTCGAGCATGAACT 58.450 50.000 13.61 2.55 0.00 3.01
1437 2876 3.057033 GCATGAACTTGCTTGACTCCATT 60.057 43.478 0.00 0.00 39.57 3.16
1460 2899 1.939934 CACGTCCAACAAGAGAAAGCA 59.060 47.619 0.00 0.00 0.00 3.91
1551 2990 0.179051 TCGTTTTAGTTGCCCGGTGT 60.179 50.000 0.00 0.00 0.00 4.16
1609 3048 1.933853 CGGAAATACTCAAGGAAGGCG 59.066 52.381 0.00 0.00 0.00 5.52
2154 3595 3.456277 AGGTGAGACTTTTCCACAGTTCT 59.544 43.478 0.00 0.00 32.79 3.01
2325 3766 3.698539 TGAACCTCTCTCAGCACTGATAG 59.301 47.826 0.00 3.83 39.13 2.08
2346 3789 9.424319 TGATAGCACTTCTAACAGTCTAAAAAG 57.576 33.333 0.00 0.00 0.00 2.27
2352 3796 6.542370 ACTTCTAACAGTCTAAAAAGCAGCAA 59.458 34.615 0.00 0.00 0.00 3.91
2370 3814 7.407337 AGCAGCAACTATATACTTAAAAACGC 58.593 34.615 0.00 0.00 0.00 4.84
2371 3815 7.065324 AGCAGCAACTATATACTTAAAAACGCA 59.935 33.333 0.00 0.00 0.00 5.24
2392 3836 4.759183 GCAATTTGGGTTAATTGGCTCAAA 59.241 37.500 10.25 10.25 42.84 2.69
2393 3837 5.240403 GCAATTTGGGTTAATTGGCTCAAAA 59.760 36.000 11.41 0.00 42.84 2.44
2399 3843 5.104735 TGGGTTAATTGGCTCAAAAGTGTTT 60.105 36.000 0.00 0.00 0.00 2.83
2441 3885 6.708054 CGGTTTCTGATCAATAAGCTATTCCT 59.292 38.462 13.54 0.00 0.00 3.36
2493 3938 2.354821 GGCCGAATACAATGTTCTCCAC 59.645 50.000 0.00 0.00 0.00 4.02
2498 3943 4.651994 GAATACAATGTTCTCCACAAGCG 58.348 43.478 0.00 0.00 39.50 4.68
2554 4002 1.955080 TGTTTGGCCCGAAAAATACGT 59.045 42.857 0.00 0.00 0.00 3.57
2558 4006 1.807742 TGGCCCGAAAAATACGTGAAG 59.192 47.619 0.00 0.00 0.00 3.02
2564 4012 4.449743 CCCGAAAAATACGTGAAGAAGACA 59.550 41.667 0.00 0.00 0.00 3.41
2577 4025 6.587990 CGTGAAGAAGACAGATACTGAATGTT 59.412 38.462 5.76 0.00 35.18 2.71
2578 4026 7.411264 CGTGAAGAAGACAGATACTGAATGTTG 60.411 40.741 5.76 0.00 35.18 3.33
2579 4027 6.875726 TGAAGAAGACAGATACTGAATGTTGG 59.124 38.462 5.76 0.00 35.18 3.77
2580 4028 6.611613 AGAAGACAGATACTGAATGTTGGA 57.388 37.500 5.76 0.00 35.18 3.53
2581 4029 7.009179 AGAAGACAGATACTGAATGTTGGAA 57.991 36.000 5.76 0.00 35.18 3.53
2582 4030 6.876257 AGAAGACAGATACTGAATGTTGGAAC 59.124 38.462 5.76 0.00 35.18 3.62
2583 4031 6.365970 AGACAGATACTGAATGTTGGAACT 57.634 37.500 5.76 0.00 35.18 3.01
2584 4032 6.773638 AGACAGATACTGAATGTTGGAACTT 58.226 36.000 5.76 0.00 35.18 2.66
2681 4129 2.325583 TGAGAAGGCTGTGTCGTTTT 57.674 45.000 0.00 0.00 0.00 2.43
2682 4130 2.639065 TGAGAAGGCTGTGTCGTTTTT 58.361 42.857 0.00 0.00 0.00 1.94
2683 4131 2.612212 TGAGAAGGCTGTGTCGTTTTTC 59.388 45.455 0.00 0.00 0.00 2.29
2820 4272 0.317603 GCAAGATCGTGGCATGATGC 60.318 55.000 26.06 20.35 44.08 3.91
2865 4317 9.061435 TGTTTTGTAATGATTACTGTGATCACA 57.939 29.630 26.33 26.33 36.43 3.58
3013 4465 2.016318 TGGTGTCATCGAATCATTGGC 58.984 47.619 0.00 0.00 0.00 4.52
3029 4481 0.259065 TGGCCCGGCATTATTTGGTA 59.741 50.000 12.58 0.00 0.00 3.25
3089 4543 2.156917 CGGTCCCTTTTACCCTGTTTC 58.843 52.381 0.00 0.00 33.10 2.78
3098 4552 4.601406 TTTACCCTGTTTCCATAGGCAT 57.399 40.909 0.00 0.00 32.58 4.40
3104 4558 3.316308 CCTGTTTCCATAGGCATTACAGC 59.684 47.826 0.00 0.00 32.33 4.40
3125 4580 3.065925 GCCCATGATGCTTTCTTGTACTC 59.934 47.826 0.00 0.00 0.00 2.59
3130 4585 5.330455 TGATGCTTTCTTGTACTCGATCT 57.670 39.130 0.00 0.00 0.00 2.75
3145 4600 9.297586 TGTACTCGATCTGTTCACAAATATAAC 57.702 33.333 0.00 0.00 0.00 1.89
3147 4602 8.771920 ACTCGATCTGTTCACAAATATAACAA 57.228 30.769 0.00 0.00 33.05 2.83
3149 4604 9.694520 CTCGATCTGTTCACAAATATAACAAAG 57.305 33.333 0.00 0.00 33.05 2.77
3150 4605 9.430623 TCGATCTGTTCACAAATATAACAAAGA 57.569 29.630 0.00 0.00 33.05 2.52
3212 4678 9.698309 ACACTATATACATCCGATTCAGAAAAG 57.302 33.333 0.00 0.00 0.00 2.27
3222 4690 4.392138 CCGATTCAGAAAAGAGTTACACCC 59.608 45.833 0.00 0.00 0.00 4.61
3224 4692 4.675976 TTCAGAAAAGAGTTACACCCGA 57.324 40.909 0.00 0.00 0.00 5.14
3227 4695 4.100498 TCAGAAAAGAGTTACACCCGAGTT 59.900 41.667 0.00 0.00 0.00 3.01
3239 4707 3.566742 ACACCCGAGTTAACAAACATTCC 59.433 43.478 8.61 0.00 0.00 3.01
3240 4708 3.566322 CACCCGAGTTAACAAACATTCCA 59.434 43.478 8.61 0.00 0.00 3.53
3243 4711 4.320202 CCCGAGTTAACAAACATTCCACTG 60.320 45.833 8.61 0.00 0.00 3.66
3251 4719 3.960102 ACAAACATTCCACTGTGGTGATT 59.040 39.130 25.15 15.20 45.61 2.57
3259 4727 4.991776 TCCACTGTGGTGATTTTTGGATA 58.008 39.130 25.15 0.00 45.61 2.59
3260 4728 4.764823 TCCACTGTGGTGATTTTTGGATAC 59.235 41.667 25.15 0.00 45.61 2.24
3293 4761 1.884067 GCCACCTGCAATATAGAGCCC 60.884 57.143 0.00 0.00 40.77 5.19
3294 4762 1.271597 CCACCTGCAATATAGAGCCCC 60.272 57.143 0.00 0.00 0.00 5.80
3322 4796 8.857694 ATCTGAGATTTTGGATTTGCAAAAAT 57.142 26.923 17.19 10.73 36.47 1.82
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
14 15 9.281371 CAAGATTACCATATCACAGATTCACAT 57.719 33.333 0.00 0.00 0.00 3.21
29 30 4.666512 ACAGTTTCAGCCAAGATTACCAT 58.333 39.130 0.00 0.00 0.00 3.55
100 105 7.453752 AGGACTGAGAAAACCTGTACATAGTTA 59.546 37.037 10.79 0.00 0.00 2.24
105 112 4.593206 TGAGGACTGAGAAAACCTGTACAT 59.407 41.667 0.00 0.00 32.53 2.29
106 113 3.964688 TGAGGACTGAGAAAACCTGTACA 59.035 43.478 0.00 0.00 32.53 2.90
134 141 8.880244 ACCCAAACAGTGCAATATAGATCTATA 58.120 33.333 21.86 21.86 33.09 1.31
135 142 7.663081 CACCCAAACAGTGCAATATAGATCTAT 59.337 37.037 18.99 18.99 0.00 1.98
153 160 1.578206 GAAGCTCCGAGCACCCAAAC 61.578 60.000 22.29 2.19 45.56 2.93
189 196 4.700213 ACCAATCATTTACCTTCCGTGAAG 59.300 41.667 6.66 6.66 39.17 3.02
193 1626 2.752903 GCACCAATCATTTACCTTCCGT 59.247 45.455 0.00 0.00 0.00 4.69
196 1629 7.671495 AAAATTGCACCAATCATTTACCTTC 57.329 32.000 0.00 0.00 32.43 3.46
267 1703 3.849645 GCAACCTTCGTGTCTGTTTCATG 60.850 47.826 0.00 0.00 0.00 3.07
307 1743 4.202245 TGTACAGCTTTCCATCACCTAC 57.798 45.455 0.00 0.00 0.00 3.18
358 1796 1.946475 GCCTCCAGTCCTCCGTGTAC 61.946 65.000 0.00 0.00 0.00 2.90
392 1830 9.727627 GAATCTGGACATTCTTAAATGCTTAAG 57.272 33.333 0.00 0.00 45.16 1.85
613 2052 0.107993 CAGAGAATTCTCCCGCAGCA 60.108 55.000 28.01 0.00 43.88 4.41
654 2093 1.005630 GCTCGAGTGGCAAGTGTCT 60.006 57.895 15.13 0.00 0.00 3.41
844 2283 4.924305 TTAAGAAATGCAGGATCATGCC 57.076 40.909 27.87 13.42 45.91 4.40
1062 2501 1.215423 TCCATCATCTCCGACTCCTCA 59.785 52.381 0.00 0.00 0.00 3.86
1231 2670 1.153369 CCGACGGCACATCAAGGAT 60.153 57.895 0.00 0.00 0.00 3.24
1263 2702 2.757868 CCCATTTGAGTCGCCCAAATAA 59.242 45.455 0.00 0.00 40.91 1.40
1302 2741 0.518636 CCATGTTCAGGTCAAGTGCG 59.481 55.000 0.00 0.00 0.00 5.34
1399 2838 2.762887 TCATGCTCGAGTCTCCAAGATT 59.237 45.455 15.13 0.00 0.00 2.40
1423 2862 1.872952 CGTGTCAATGGAGTCAAGCAA 59.127 47.619 0.00 0.00 0.00 3.91
1437 2876 2.971660 TTCTCTTGTTGGACGTGTCA 57.028 45.000 0.00 0.00 0.00 3.58
1460 2899 3.529319 AGCTATTTTCCCTTGATCCTGGT 59.471 43.478 0.00 0.00 0.00 4.00
1609 3048 0.038526 TCTTTGTCCGCTTCGAGTCC 60.039 55.000 0.00 0.00 0.00 3.85
1783 3222 0.894141 CATAGAGGCTCTGGGGATCG 59.106 60.000 26.95 4.11 0.00 3.69
2154 3595 5.304778 TCGAAATGGATGAAGTTCTGAACA 58.695 37.500 21.50 2.60 0.00 3.18
2224 3665 3.499050 GCTGAGGAGCTGCACATG 58.501 61.111 8.35 3.07 42.52 3.21
2325 3766 6.300354 TGCTTTTTAGACTGTTAGAAGTGC 57.700 37.500 0.00 0.00 0.00 4.40
2346 3789 7.184106 TGCGTTTTTAAGTATATAGTTGCTGC 58.816 34.615 12.29 8.29 0.00 5.25
2370 3814 6.486320 ACTTTTGAGCCAATTAACCCAAATTG 59.514 34.615 2.97 2.97 43.45 2.32
2371 3815 6.486320 CACTTTTGAGCCAATTAACCCAAATT 59.514 34.615 0.00 0.00 0.00 1.82
2392 3836 2.608546 TGCGCGTTAGTAACAAACACTT 59.391 40.909 8.43 0.00 0.00 3.16
2393 3837 2.203401 TGCGCGTTAGTAACAAACACT 58.797 42.857 8.43 0.00 0.00 3.55
2416 3860 6.708054 AGGAATAGCTTATTGATCAGAAACCG 59.292 38.462 0.00 0.00 0.00 4.44
2441 3885 2.762887 CCTGAGAGAGATACAACTGCCA 59.237 50.000 0.00 0.00 0.00 4.92
2508 3953 3.259902 CACTCCTTTTAGTAACCGGAGC 58.740 50.000 9.46 0.00 43.92 4.70
2523 3968 2.354902 GCCAAACAATGCCACTCCT 58.645 52.632 0.00 0.00 0.00 3.69
2554 4002 6.875726 CCAACATTCAGTATCTGTCTTCTTCA 59.124 38.462 0.00 0.00 32.61 3.02
2558 4006 6.876257 AGTTCCAACATTCAGTATCTGTCTTC 59.124 38.462 0.00 0.00 32.61 2.87
2564 4012 6.126863 TCCAAGTTCCAACATTCAGTATCT 57.873 37.500 0.00 0.00 0.00 1.98
2577 4025 1.349026 CAGAGCCTCTTCCAAGTTCCA 59.651 52.381 0.00 0.00 0.00 3.53
2578 4026 1.948144 GCAGAGCCTCTTCCAAGTTCC 60.948 57.143 0.00 0.00 0.00 3.62
2579 4027 1.271054 TGCAGAGCCTCTTCCAAGTTC 60.271 52.381 0.00 0.00 0.00 3.01
2580 4028 0.767375 TGCAGAGCCTCTTCCAAGTT 59.233 50.000 0.00 0.00 0.00 2.66
2581 4029 0.767375 TTGCAGAGCCTCTTCCAAGT 59.233 50.000 0.00 0.00 0.00 3.16
2582 4030 1.163554 GTTGCAGAGCCTCTTCCAAG 58.836 55.000 5.14 0.00 0.00 3.61
2583 4031 0.767375 AGTTGCAGAGCCTCTTCCAA 59.233 50.000 0.00 0.00 0.00 3.53
2584 4032 0.767375 AAGTTGCAGAGCCTCTTCCA 59.233 50.000 0.00 0.00 0.00 3.53
2820 4272 5.484173 AACATGTTATATGACAACTGCCG 57.516 39.130 9.97 0.00 32.47 5.69
3013 4465 1.679153 GGTGTACCAAATAATGCCGGG 59.321 52.381 2.18 0.00 35.64 5.73
3029 4481 3.631250 AGAAACATGAACCAACAGGTGT 58.369 40.909 0.00 0.00 35.04 4.16
3098 4552 3.370840 AGAAAGCATCATGGGCTGTAA 57.629 42.857 12.56 0.00 41.66 2.41
3104 4558 3.310774 CGAGTACAAGAAAGCATCATGGG 59.689 47.826 0.00 0.00 31.00 4.00
3160 4615 9.772973 TGTTTGTTCAGTCTGTATGTAGTTTAT 57.227 29.630 0.00 0.00 0.00 1.40
3161 4616 9.037737 GTGTTTGTTCAGTCTGTATGTAGTTTA 57.962 33.333 0.00 0.00 0.00 2.01
3162 4617 7.551262 TGTGTTTGTTCAGTCTGTATGTAGTTT 59.449 33.333 0.00 0.00 0.00 2.66
3163 4618 7.011109 GTGTGTTTGTTCAGTCTGTATGTAGTT 59.989 37.037 0.00 0.00 0.00 2.24
3164 4619 6.479001 GTGTGTTTGTTCAGTCTGTATGTAGT 59.521 38.462 0.00 0.00 0.00 2.73
3165 4620 6.701841 AGTGTGTTTGTTCAGTCTGTATGTAG 59.298 38.462 0.00 0.00 0.00 2.74
3166 4621 6.578944 AGTGTGTTTGTTCAGTCTGTATGTA 58.421 36.000 0.00 0.00 0.00 2.29
3167 4622 5.428253 AGTGTGTTTGTTCAGTCTGTATGT 58.572 37.500 0.00 0.00 0.00 2.29
3168 4623 5.991328 AGTGTGTTTGTTCAGTCTGTATG 57.009 39.130 0.00 0.00 0.00 2.39
3170 4625 9.850628 GTATATAGTGTGTTTGTTCAGTCTGTA 57.149 33.333 0.00 0.00 0.00 2.74
3171 4626 8.364894 TGTATATAGTGTGTTTGTTCAGTCTGT 58.635 33.333 0.00 0.00 0.00 3.41
3172 4627 8.757164 TGTATATAGTGTGTTTGTTCAGTCTG 57.243 34.615 0.00 0.00 0.00 3.51
3173 4628 9.587772 GATGTATATAGTGTGTTTGTTCAGTCT 57.412 33.333 0.00 0.00 0.00 3.24
3176 4631 7.704899 TCGGATGTATATAGTGTGTTTGTTCAG 59.295 37.037 0.00 0.00 0.00 3.02
3212 4678 4.810491 TGTTTGTTAACTCGGGTGTAACTC 59.190 41.667 16.28 10.26 34.19 3.01
3222 4690 5.204833 CACAGTGGAATGTTTGTTAACTCG 58.795 41.667 7.22 0.00 35.24 4.18
3224 4692 4.953579 ACCACAGTGGAATGTTTGTTAACT 59.046 37.500 27.39 0.00 40.96 2.24
3227 4695 4.527944 TCACCACAGTGGAATGTTTGTTA 58.472 39.130 27.39 0.00 44.64 2.41
3239 4707 4.766891 AGGTATCCAAAAATCACCACAGTG 59.233 41.667 0.00 0.00 46.00 3.66
3240 4708 4.998051 AGGTATCCAAAAATCACCACAGT 58.002 39.130 0.00 0.00 0.00 3.55
3243 4711 6.884836 AGAACTAGGTATCCAAAAATCACCAC 59.115 38.462 0.00 0.00 0.00 4.16
3251 4719 5.488341 GCACTCAGAACTAGGTATCCAAAA 58.512 41.667 0.00 0.00 0.00 2.44
3259 4727 0.977395 GGTGGCACTCAGAACTAGGT 59.023 55.000 18.45 0.00 0.00 3.08
3260 4728 1.066573 CAGGTGGCACTCAGAACTAGG 60.067 57.143 18.45 0.00 0.00 3.02
3289 4757 2.648059 CAAAATCTCAGATTCGGGGCT 58.352 47.619 0.00 0.00 0.00 5.19
3293 4761 5.039333 GCAAATCCAAAATCTCAGATTCGG 58.961 41.667 0.00 4.97 0.00 4.30
3294 4762 5.643664 TGCAAATCCAAAATCTCAGATTCG 58.356 37.500 0.00 0.00 0.00 3.34


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.