Multiple sequence alignment - TraesCS4B01G080400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G080400 chr4B 100.000 5913 0 0 644 6556 78032439 78026527 0.000000e+00 10920
1 TraesCS4B01G080400 chr4B 100.000 402 0 0 1 402 78033082 78032681 0.000000e+00 743
2 TraesCS4B01G080400 chr4A 96.190 4961 148 17 644 5592 543730050 543734981 0.000000e+00 8076
3 TraesCS4B01G080400 chr4A 94.218 294 17 0 40 333 543729380 543729673 3.610000e-122 449
4 TraesCS4B01G080400 chr4A 81.306 337 26 16 5635 5955 543735113 543735428 8.500000e-59 239
5 TraesCS4B01G080400 chr4A 86.765 204 21 2 6210 6413 543735426 543735623 8.560000e-54 222
6 TraesCS4B01G080400 chr1D 91.792 2790 162 31 1680 4446 48462149 48459404 0.000000e+00 3821
7 TraesCS4B01G080400 chr1D 91.977 1022 57 13 644 1642 48463162 48462143 0.000000e+00 1410
8 TraesCS4B01G080400 chr1D 90.607 1022 75 10 4578 5585 48459412 48458398 0.000000e+00 1336
9 TraesCS4B01G080400 chr1D 93.617 329 17 2 74 402 48463508 48463184 7.640000e-134 488
10 TraesCS4B01G080400 chr1D 96.753 154 4 1 5944 6097 9764224 9764072 8.440000e-64 255
11 TraesCS4B01G080400 chr1B 91.270 2749 176 27 1680 4409 68254076 68251373 0.000000e+00 3688
12 TraesCS4B01G080400 chr1B 89.815 1188 91 15 4578 5752 68250362 68249192 0.000000e+00 1496
13 TraesCS4B01G080400 chr1B 92.468 1009 50 12 658 1642 68255076 68254070 0.000000e+00 1419
14 TraesCS4B01G080400 chr1B 83.203 256 40 2 5954 6209 450026720 450026972 1.420000e-56 231
15 TraesCS4B01G080400 chr4D 96.358 1977 58 6 3992 5956 53244306 53242332 0.000000e+00 3240
16 TraesCS4B01G080400 chr4D 98.812 1768 21 0 2241 4008 53246086 53244319 0.000000e+00 3149
17 TraesCS4B01G080400 chr4D 97.487 796 18 2 644 1438 53247711 53246917 0.000000e+00 1358
18 TraesCS4B01G080400 chr4D 94.481 761 26 8 1492 2243 53246920 53246167 0.000000e+00 1158
19 TraesCS4B01G080400 chr4D 91.341 358 19 5 6210 6556 53242335 53241979 4.600000e-131 479
20 TraesCS4B01G080400 chr4D 91.946 298 12 1 40 337 53248321 53248036 2.200000e-109 407
21 TraesCS4B01G080400 chr1A 90.165 2491 163 30 1990 4446 48728666 48726224 0.000000e+00 3168
22 TraesCS4B01G080400 chr1A 91.512 1025 80 4 4578 5595 48726232 48725208 0.000000e+00 1404
23 TraesCS4B01G080400 chr1A 91.863 1020 55 12 650 1642 48729935 48728917 0.000000e+00 1399
24 TraesCS4B01G080400 chr1A 93.711 318 15 3 88 402 48730278 48729963 7.690000e-129 472
25 TraesCS4B01G080400 chr1A 89.723 253 22 2 1680 1932 48728923 48728675 2.950000e-83 320
26 TraesCS4B01G080400 chr5B 93.103 261 18 0 5954 6214 270679673 270679413 3.710000e-102 383
27 TraesCS4B01G080400 chr5B 89.811 265 24 2 5949 6212 595288847 595288585 2.930000e-88 337
28 TraesCS4B01G080400 chr3B 86.641 262 29 4 5953 6212 712995931 712995674 1.080000e-72 285
29 TraesCS4B01G080400 chr3B 91.765 85 5 2 6131 6214 826141352 826141435 4.150000e-22 117
30 TraesCS4B01G080400 chr3B 81.081 148 18 4 6075 6212 315453340 315453487 6.950000e-20 110
31 TraesCS4B01G080400 chr3B 90.244 82 8 0 6133 6214 195364454 195364373 2.500000e-19 108
32 TraesCS4B01G080400 chr7B 87.705 244 13 8 5972 6212 736300323 736300552 1.080000e-67 268
33 TraesCS4B01G080400 chr3A 83.883 273 34 6 5947 6212 646683609 646683340 1.090000e-62 252
34 TraesCS4B01G080400 chr3A 83.568 213 35 0 5954 6166 661926678 661926890 4.010000e-47 200
35 TraesCS4B01G080400 chr6B 84.475 219 32 1 5953 6171 333822221 333822005 1.430000e-51 215
36 TraesCS4B01G080400 chr6B 84.475 219 32 1 5953 6171 333895638 333895422 1.430000e-51 215


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G080400 chr4B 78026527 78033082 6555 True 5831.500000 10920 100.000000 1 6556 2 chr4B.!!$R1 6555
1 TraesCS4B01G080400 chr4A 543729380 543735623 6243 False 2246.500000 8076 89.619750 40 6413 4 chr4A.!!$F1 6373
2 TraesCS4B01G080400 chr1D 48458398 48463508 5110 True 1763.750000 3821 91.998250 74 5585 4 chr1D.!!$R2 5511
3 TraesCS4B01G080400 chr1B 68249192 68255076 5884 True 2201.000000 3688 91.184333 658 5752 3 chr1B.!!$R1 5094
4 TraesCS4B01G080400 chr4D 53241979 53248321 6342 True 1631.833333 3240 95.070833 40 6556 6 chr4D.!!$R1 6516
5 TraesCS4B01G080400 chr1A 48725208 48730278 5070 True 1352.600000 3168 91.394800 88 5595 5 chr1A.!!$R1 5507

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
49 50 0.040351 TTCCCATTTCCAATCGCCCA 59.960 50.000 0.00 0.0 0.00 5.36 F
741 983 4.083862 GACCTTCTCCGCCCGCTT 62.084 66.667 0.00 0.0 0.00 4.68 F
1227 1469 1.075896 GGTCAGAGGGGAGATCGGT 60.076 63.158 0.00 0.0 0.00 4.69 F
1460 1702 1.155889 TGTTGGCTACTGTTGATGCG 58.844 50.000 0.01 0.0 0.00 4.73 F
2392 2854 0.903454 TTCCCCTCGAAGACCCAGAC 60.903 60.000 0.00 0.0 0.00 3.51 F
3608 4070 0.703488 TTGAACCTCCATCATGCCCA 59.297 50.000 0.00 0.0 0.00 5.36 F
4606 6102 0.478072 TGTGCAGGAAATCCAGTGGT 59.522 50.000 9.54 0.0 38.89 4.16 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1227 1469 1.139498 TCCCCTGCAGAAACCCATCA 61.139 55.000 17.39 0.00 0.00 3.07 R
1566 1890 3.057526 ACCTTTCCTAAGCGAAACATTGC 60.058 43.478 0.00 0.00 0.00 3.56 R
2088 2438 4.122776 GAGCATAAACAGTGATGACCGAT 58.877 43.478 0.00 0.00 0.00 4.18 R
3363 3825 1.604308 CCACTGGCACCATGCTGAA 60.604 57.895 0.13 0.00 44.28 3.02 R
3972 4434 0.250510 TGGTGGCACTGCGTAAATCA 60.251 50.000 18.45 0.11 0.00 2.57 R
5250 6746 0.035056 CCACCCACAGAATCCAGGAC 60.035 60.000 0.00 0.00 0.00 3.85 R
6189 7802 0.032813 TCCCTCCGTCCGGAAATACT 60.033 55.000 5.23 0.00 44.66 2.12 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 2.536761 AGAAAACATCGGTCGGTTGA 57.463 45.000 0.00 0.00 0.00 3.18
20 21 2.140717 AGAAAACATCGGTCGGTTGAC 58.859 47.619 0.00 0.00 44.72 3.18
31 32 3.850508 GGTTGACCACCGGCTTTT 58.149 55.556 0.00 0.00 35.12 2.27
32 33 1.658114 GGTTGACCACCGGCTTTTC 59.342 57.895 0.00 0.00 35.12 2.29
33 34 1.658114 GTTGACCACCGGCTTTTCC 59.342 57.895 0.00 0.00 0.00 3.13
34 35 1.529713 TTGACCACCGGCTTTTCCC 60.530 57.895 0.00 0.00 0.00 3.97
35 36 2.114411 GACCACCGGCTTTTCCCA 59.886 61.111 0.00 0.00 0.00 4.37
36 37 1.304134 GACCACCGGCTTTTCCCAT 60.304 57.895 0.00 0.00 0.00 4.00
37 38 0.898326 GACCACCGGCTTTTCCCATT 60.898 55.000 0.00 0.00 0.00 3.16
38 39 0.471022 ACCACCGGCTTTTCCCATTT 60.471 50.000 0.00 0.00 0.00 2.32
49 50 0.040351 TTCCCATTTCCAATCGCCCA 59.960 50.000 0.00 0.00 0.00 5.36
320 324 4.821589 GCGGCTCTCAAGACCCCG 62.822 72.222 9.05 9.05 37.10 5.73
741 983 4.083862 GACCTTCTCCGCCCGCTT 62.084 66.667 0.00 0.00 0.00 4.68
1017 1259 4.631247 TTGCTCCTGCTGCGCTGT 62.631 61.111 16.05 0.00 40.48 4.40
1227 1469 1.075896 GGTCAGAGGGGAGATCGGT 60.076 63.158 0.00 0.00 0.00 4.69
1450 1692 6.221659 GGTGGTAGAACTATATGTTGGCTAC 58.778 44.000 0.00 0.00 39.30 3.58
1460 1702 1.155889 TGTTGGCTACTGTTGATGCG 58.844 50.000 0.01 0.00 0.00 4.73
1471 1713 4.072131 ACTGTTGATGCGAATTTGTACCT 58.928 39.130 0.00 0.00 0.00 3.08
1566 1890 9.110617 GCGATTTGTTGATGAATTATGATAGTG 57.889 33.333 0.00 0.00 0.00 2.74
1727 2077 3.553511 CGCTGCCATAACAAACAAACAAA 59.446 39.130 0.00 0.00 0.00 2.83
1728 2078 4.549871 CGCTGCCATAACAAACAAACAAAC 60.550 41.667 0.00 0.00 0.00 2.93
1729 2079 4.331168 GCTGCCATAACAAACAAACAAACA 59.669 37.500 0.00 0.00 0.00 2.83
1730 2080 5.007528 GCTGCCATAACAAACAAACAAACAT 59.992 36.000 0.00 0.00 0.00 2.71
1823 2173 6.986817 TGATATCTTAGCCTCTTAGTGTTTGC 59.013 38.462 3.98 0.00 0.00 3.68
1877 2227 5.087323 AGGGAGAGTCTACACAAAGATCAA 58.913 41.667 4.35 0.00 0.00 2.57
2088 2438 2.496871 CCACATTCCCAAAGCTGCATAA 59.503 45.455 1.02 0.00 0.00 1.90
2128 2478 6.798427 ATGCTCTAGGTATGAGAGAAACAA 57.202 37.500 3.87 0.00 42.69 2.83
2130 2480 7.187824 TGCTCTAGGTATGAGAGAAACAATT 57.812 36.000 3.87 0.00 42.69 2.32
2131 2481 8.306313 TGCTCTAGGTATGAGAGAAACAATTA 57.694 34.615 3.87 0.00 42.69 1.40
2132 2482 8.198109 TGCTCTAGGTATGAGAGAAACAATTAC 58.802 37.037 3.87 0.00 42.69 1.89
2158 2512 7.008021 ACCATCTTTTTAGAACAATGGCAAT 57.992 32.000 0.00 0.00 37.72 3.56
2161 2515 9.434420 CCATCTTTTTAGAACAATGGCAATTTA 57.566 29.630 0.00 0.00 0.00 1.40
2171 2525 9.139174 AGAACAATGGCAATTTAACTAAATTCG 57.861 29.630 4.77 3.48 42.26 3.34
2392 2854 0.903454 TTCCCCTCGAAGACCCAGAC 60.903 60.000 0.00 0.00 0.00 3.51
2503 2965 3.003689 CAGTCGCAGTTGAAGGAATTTGT 59.996 43.478 0.00 0.00 0.00 2.83
3363 3825 2.282745 GTGCCCAGGCTGCTCTTT 60.283 61.111 9.56 0.00 42.51 2.52
3512 3974 5.183140 GCATAAGTTGGTACATTTGAGTGGT 59.817 40.000 0.00 0.00 39.30 4.16
3608 4070 0.703488 TTGAACCTCCATCATGCCCA 59.297 50.000 0.00 0.00 0.00 5.36
3833 4295 5.443185 TTGCATTTTCTTCTCTGAAGGTG 57.557 39.130 7.37 4.01 0.00 4.00
3875 4337 4.081406 AGCAGTGCCTACATTTTGAATCA 58.919 39.130 12.58 0.00 0.00 2.57
3953 4415 7.061566 TCAGGATGTTGATCAAACGGATATA 57.938 36.000 10.35 0.00 42.10 0.86
3972 4434 1.055040 AAGCTGCTCTGAGGTGAGTT 58.945 50.000 1.00 0.00 36.51 3.01
4012 4506 5.237779 ACCACACCTGTTATCTTGTTAAACG 59.762 40.000 0.00 0.00 0.00 3.60
4015 4509 7.308348 CCACACCTGTTATCTTGTTAAACGATT 60.308 37.037 0.00 0.00 0.00 3.34
4187 4690 9.683069 GTCTCATTGTAAATTTCATCTTGTGTT 57.317 29.630 0.00 0.00 0.00 3.32
4349 4852 0.618458 TGTCACCCCTGAAGGTATGC 59.382 55.000 0.00 0.00 38.39 3.14
4462 5958 8.504812 TGATAGCATGCAAAGAGTGTAAATAA 57.495 30.769 21.98 0.00 0.00 1.40
4606 6102 0.478072 TGTGCAGGAAATCCAGTGGT 59.522 50.000 9.54 0.00 38.89 4.16
4995 6491 4.510571 AGTTTCTGTCGTAAAACAGTGGT 58.489 39.130 4.15 0.00 45.57 4.16
5034 6530 3.346631 CTTGGATGCCGCTGGTTGC 62.347 63.158 0.00 0.00 38.57 4.17
5039 6535 3.866379 ATGCCGCTGGTTGCTTGGA 62.866 57.895 0.00 0.00 40.11 3.53
5054 6550 3.181440 TGCTTGGACCAGAAAGTGAGATT 60.181 43.478 0.00 0.00 0.00 2.40
5060 6556 4.323104 GGACCAGAAAGTGAGATTGCTACT 60.323 45.833 0.00 0.00 0.00 2.57
5105 6601 2.837291 TTGCCACTGTGGGTTGCC 60.837 61.111 27.02 11.26 38.19 4.52
5151 6647 0.686769 GGCGGAAGAACCTAGGGAGA 60.687 60.000 14.81 0.00 36.31 3.71
5168 6664 2.482664 GGAGAATGATCAGAGCGAGCAA 60.483 50.000 0.09 0.00 44.72 3.91
5207 6703 1.879380 TCACCGTCATCCAAAAAGCTG 59.121 47.619 0.00 0.00 0.00 4.24
5250 6746 3.441922 GCTGAAGAAAGGAAGCCCTAAAG 59.558 47.826 0.00 0.00 43.48 1.85
5420 6925 2.738000 GCTCACTCATGATTCTCTGCGT 60.738 50.000 0.00 0.00 33.22 5.24
5436 6941 1.074752 GCGTGAGAGCTTCTTTGAGG 58.925 55.000 0.00 0.00 0.00 3.86
5519 7027 7.688372 AGAGTGCAAAAATATTGATACAGTCG 58.312 34.615 0.00 0.00 32.75 4.18
5782 7381 5.451937 GCAGCTGTGTATGGACATCTACTTA 60.452 44.000 16.64 0.00 38.04 2.24
5963 7576 8.749026 ATAGTATTACATATGTACTCCCTCCG 57.251 38.462 15.20 0.00 31.58 4.63
5964 7577 6.550163 AGTATTACATATGTACTCCCTCCGT 58.450 40.000 15.20 0.00 0.00 4.69
5965 7578 7.008941 AGTATTACATATGTACTCCCTCCGTT 58.991 38.462 15.20 0.00 0.00 4.44
5966 7579 5.779529 TTACATATGTACTCCCTCCGTTC 57.220 43.478 15.20 0.00 0.00 3.95
5967 7580 2.963782 ACATATGTACTCCCTCCGTTCC 59.036 50.000 6.56 0.00 0.00 3.62
5968 7581 3.231818 CATATGTACTCCCTCCGTTCCT 58.768 50.000 0.00 0.00 0.00 3.36
5969 7582 4.141088 ACATATGTACTCCCTCCGTTCCTA 60.141 45.833 6.56 0.00 0.00 2.94
5970 7583 2.905415 TGTACTCCCTCCGTTCCTAA 57.095 50.000 0.00 0.00 0.00 2.69
5971 7584 3.173953 TGTACTCCCTCCGTTCCTAAA 57.826 47.619 0.00 0.00 0.00 1.85
5972 7585 3.716431 TGTACTCCCTCCGTTCCTAAAT 58.284 45.455 0.00 0.00 0.00 1.40
5973 7586 4.870636 TGTACTCCCTCCGTTCCTAAATA 58.129 43.478 0.00 0.00 0.00 1.40
5974 7587 5.461327 TGTACTCCCTCCGTTCCTAAATAT 58.539 41.667 0.00 0.00 0.00 1.28
5975 7588 6.613699 TGTACTCCCTCCGTTCCTAAATATA 58.386 40.000 0.00 0.00 0.00 0.86
5976 7589 7.068702 TGTACTCCCTCCGTTCCTAAATATAA 58.931 38.462 0.00 0.00 0.00 0.98
5977 7590 6.667558 ACTCCCTCCGTTCCTAAATATAAG 57.332 41.667 0.00 0.00 0.00 1.73
5978 7591 6.141790 ACTCCCTCCGTTCCTAAATATAAGT 58.858 40.000 0.00 0.00 0.00 2.24
5979 7592 6.267242 ACTCCCTCCGTTCCTAAATATAAGTC 59.733 42.308 0.00 0.00 0.00 3.01
5980 7593 6.379579 TCCCTCCGTTCCTAAATATAAGTCT 58.620 40.000 0.00 0.00 0.00 3.24
5981 7594 6.842807 TCCCTCCGTTCCTAAATATAAGTCTT 59.157 38.462 0.00 0.00 0.00 3.01
5982 7595 7.346436 TCCCTCCGTTCCTAAATATAAGTCTTT 59.654 37.037 0.00 0.00 0.00 2.52
5983 7596 7.441458 CCCTCCGTTCCTAAATATAAGTCTTTG 59.559 40.741 0.00 0.00 0.00 2.77
5984 7597 7.985752 CCTCCGTTCCTAAATATAAGTCTTTGT 59.014 37.037 0.00 0.00 0.00 2.83
6004 7617 9.958180 TCTTTGTAGAGATTTCATTATGAACCA 57.042 29.630 7.19 0.00 35.89 3.67
6005 7618 9.994432 CTTTGTAGAGATTTCATTATGAACCAC 57.006 33.333 7.19 2.67 35.89 4.16
6006 7619 9.513906 TTTGTAGAGATTTCATTATGAACCACA 57.486 29.630 7.19 0.00 35.89 4.17
6007 7620 9.685276 TTGTAGAGATTTCATTATGAACCACAT 57.315 29.630 7.19 0.00 35.89 3.21
6010 7623 8.370493 AGAGATTTCATTATGAACCACATACG 57.630 34.615 7.19 0.00 40.62 3.06
6011 7624 7.442364 AGAGATTTCATTATGAACCACATACGG 59.558 37.037 7.19 0.00 40.62 4.02
6012 7625 7.279615 AGATTTCATTATGAACCACATACGGA 58.720 34.615 7.19 0.00 40.62 4.69
6013 7626 7.939039 AGATTTCATTATGAACCACATACGGAT 59.061 33.333 7.19 0.00 40.62 4.18
6014 7627 6.859420 TTCATTATGAACCACATACGGATG 57.141 37.500 5.94 5.94 40.62 3.51
6015 7628 6.353323 TTCATTATGAACCACATACGGATGT 58.647 36.000 7.68 7.68 40.62 3.06
6016 7629 7.056844 TCATTATGAACCACATACGGATGTA 57.943 36.000 14.23 0.00 44.82 2.29
6017 7630 7.676004 TCATTATGAACCACATACGGATGTAT 58.324 34.615 14.23 5.54 44.82 2.29
6018 7631 8.808092 TCATTATGAACCACATACGGATGTATA 58.192 33.333 14.23 4.47 44.82 1.47
6019 7632 9.599866 CATTATGAACCACATACGGATGTATAT 57.400 33.333 14.23 1.68 44.82 0.86
6022 7635 8.589701 ATGAACCACATACGGATGTATATAGA 57.410 34.615 14.23 0.00 44.82 1.98
6023 7636 8.589701 TGAACCACATACGGATGTATATAGAT 57.410 34.615 14.23 0.00 44.82 1.98
6024 7637 8.466798 TGAACCACATACGGATGTATATAGATG 58.533 37.037 14.23 0.00 44.82 2.90
6025 7638 6.806751 ACCACATACGGATGTATATAGATGC 58.193 40.000 14.23 0.00 44.82 3.91
6026 7639 6.379988 ACCACATACGGATGTATATAGATGCA 59.620 38.462 14.23 0.00 44.82 3.96
6027 7640 7.069950 ACCACATACGGATGTATATAGATGCAT 59.930 37.037 14.23 0.00 44.82 3.96
6028 7641 7.928167 CCACATACGGATGTATATAGATGCATT 59.072 37.037 14.23 1.23 44.82 3.56
6029 7642 9.317936 CACATACGGATGTATATAGATGCATTT 57.682 33.333 14.23 0.00 44.82 2.32
6030 7643 9.890629 ACATACGGATGTATATAGATGCATTTT 57.109 29.630 12.79 0.00 44.77 1.82
6034 7647 9.944376 ACGGATGTATATAGATGCATTTTAAGT 57.056 29.630 11.19 0.00 38.38 2.24
6046 7659 8.844244 AGATGCATTTTAAGTGTAGATTCATCC 58.156 33.333 0.00 0.00 0.00 3.51
6047 7660 7.936496 TGCATTTTAAGTGTAGATTCATCCA 57.064 32.000 0.00 0.00 0.00 3.41
6048 7661 8.523915 TGCATTTTAAGTGTAGATTCATCCAT 57.476 30.769 0.00 0.00 0.00 3.41
6049 7662 8.970020 TGCATTTTAAGTGTAGATTCATCCATT 58.030 29.630 0.00 0.00 0.00 3.16
6050 7663 9.807649 GCATTTTAAGTGTAGATTCATCCATTT 57.192 29.630 0.00 0.00 0.00 2.32
6053 7666 9.638239 TTTTAAGTGTAGATTCATCCATTTTGC 57.362 29.630 0.00 0.00 0.00 3.68
6054 7667 8.579850 TTAAGTGTAGATTCATCCATTTTGCT 57.420 30.769 0.00 0.00 0.00 3.91
6055 7668 6.690194 AGTGTAGATTCATCCATTTTGCTC 57.310 37.500 0.00 0.00 0.00 4.26
6056 7669 5.591877 AGTGTAGATTCATCCATTTTGCTCC 59.408 40.000 0.00 0.00 0.00 4.70
6057 7670 4.576053 TGTAGATTCATCCATTTTGCTCCG 59.424 41.667 0.00 0.00 0.00 4.63
6058 7671 3.624777 AGATTCATCCATTTTGCTCCGT 58.375 40.909 0.00 0.00 0.00 4.69
6059 7672 4.780815 AGATTCATCCATTTTGCTCCGTA 58.219 39.130 0.00 0.00 0.00 4.02
6060 7673 5.380043 AGATTCATCCATTTTGCTCCGTAT 58.620 37.500 0.00 0.00 0.00 3.06
6061 7674 4.898829 TTCATCCATTTTGCTCCGTATG 57.101 40.909 0.00 0.00 0.00 2.39
6062 7675 3.884895 TCATCCATTTTGCTCCGTATGT 58.115 40.909 0.00 0.00 0.00 2.29
6063 7676 5.029807 TCATCCATTTTGCTCCGTATGTA 57.970 39.130 0.00 0.00 0.00 2.29
6064 7677 5.056480 TCATCCATTTTGCTCCGTATGTAG 58.944 41.667 0.00 0.00 0.00 2.74
6065 7678 4.481368 TCCATTTTGCTCCGTATGTAGT 57.519 40.909 0.00 0.00 0.00 2.73
6066 7679 4.439057 TCCATTTTGCTCCGTATGTAGTC 58.561 43.478 0.00 0.00 0.00 2.59
6067 7680 3.560068 CCATTTTGCTCCGTATGTAGTCC 59.440 47.826 0.00 0.00 0.00 3.85
6068 7681 3.965379 TTTTGCTCCGTATGTAGTCCA 57.035 42.857 0.00 0.00 0.00 4.02
6069 7682 2.953466 TTGCTCCGTATGTAGTCCAC 57.047 50.000 0.00 0.00 0.00 4.02
6070 7683 1.108776 TGCTCCGTATGTAGTCCACC 58.891 55.000 0.00 0.00 0.00 4.61
6071 7684 1.341679 TGCTCCGTATGTAGTCCACCT 60.342 52.381 0.00 0.00 0.00 4.00
6072 7685 2.092267 TGCTCCGTATGTAGTCCACCTA 60.092 50.000 0.00 0.00 0.00 3.08
6073 7686 2.553172 GCTCCGTATGTAGTCCACCTAG 59.447 54.545 0.00 0.00 0.00 3.02
6074 7687 3.818180 CTCCGTATGTAGTCCACCTAGT 58.182 50.000 0.00 0.00 0.00 2.57
6075 7688 3.548770 TCCGTATGTAGTCCACCTAGTG 58.451 50.000 0.00 0.00 0.00 2.74
6089 7702 5.255710 CACCTAGTGGAATCTCTACACAG 57.744 47.826 0.00 0.00 37.58 3.66
6090 7703 4.950475 CACCTAGTGGAATCTCTACACAGA 59.050 45.833 0.00 0.00 37.58 3.41
6091 7704 4.951094 ACCTAGTGGAATCTCTACACAGAC 59.049 45.833 0.00 0.00 37.58 3.51
6092 7705 5.197451 CCTAGTGGAATCTCTACACAGACT 58.803 45.833 0.00 0.00 37.58 3.24
6093 7706 5.654650 CCTAGTGGAATCTCTACACAGACTT 59.345 44.000 0.00 0.00 37.58 3.01
6094 7707 5.398603 AGTGGAATCTCTACACAGACTTG 57.601 43.478 0.00 0.00 37.58 3.16
6095 7708 4.835615 AGTGGAATCTCTACACAGACTTGT 59.164 41.667 0.00 0.00 37.58 3.16
6096 7709 6.010850 AGTGGAATCTCTACACAGACTTGTA 58.989 40.000 0.00 0.00 37.58 2.41
6097 7710 6.071840 AGTGGAATCTCTACACAGACTTGTAC 60.072 42.308 0.00 0.00 37.58 2.90
6098 7711 6.010850 TGGAATCTCTACACAGACTTGTACT 58.989 40.000 0.00 0.00 35.25 2.73
6099 7712 6.151312 TGGAATCTCTACACAGACTTGTACTC 59.849 42.308 0.00 0.00 35.25 2.59
6100 7713 6.404954 GGAATCTCTACACAGACTTGTACTCC 60.405 46.154 0.00 0.00 35.25 3.85
6101 7714 4.333690 TCTCTACACAGACTTGTACTCCC 58.666 47.826 0.00 0.00 35.25 4.30
6102 7715 4.043059 TCTCTACACAGACTTGTACTCCCT 59.957 45.833 0.00 0.00 35.25 4.20
6103 7716 4.333690 TCTACACAGACTTGTACTCCCTC 58.666 47.826 0.00 0.00 35.25 4.30
6104 7717 2.249139 ACACAGACTTGTACTCCCTCC 58.751 52.381 0.00 0.00 35.25 4.30
6105 7718 1.202582 CACAGACTTGTACTCCCTCCG 59.797 57.143 0.00 0.00 35.25 4.63
6106 7719 1.203025 ACAGACTTGTACTCCCTCCGT 60.203 52.381 0.00 0.00 35.25 4.69
6107 7720 1.473278 CAGACTTGTACTCCCTCCGTC 59.527 57.143 0.00 0.00 0.00 4.79
6108 7721 0.816373 GACTTGTACTCCCTCCGTCC 59.184 60.000 0.00 0.00 0.00 4.79
6109 7722 0.964358 ACTTGTACTCCCTCCGTCCG 60.964 60.000 0.00 0.00 0.00 4.79
6110 7723 0.679002 CTTGTACTCCCTCCGTCCGA 60.679 60.000 0.00 0.00 0.00 4.55
6111 7724 0.251297 TTGTACTCCCTCCGTCCGAA 60.251 55.000 0.00 0.00 0.00 4.30
6112 7725 0.251297 TGTACTCCCTCCGTCCGAAA 60.251 55.000 0.00 0.00 0.00 3.46
6113 7726 0.890683 GTACTCCCTCCGTCCGAAAA 59.109 55.000 0.00 0.00 0.00 2.29
6114 7727 1.479730 GTACTCCCTCCGTCCGAAAAT 59.520 52.381 0.00 0.00 0.00 1.82
6115 7728 1.856629 ACTCCCTCCGTCCGAAAATA 58.143 50.000 0.00 0.00 0.00 1.40
6116 7729 1.479730 ACTCCCTCCGTCCGAAAATAC 59.520 52.381 0.00 0.00 0.00 1.89
6117 7730 1.755380 CTCCCTCCGTCCGAAAATACT 59.245 52.381 0.00 0.00 0.00 2.12
6118 7731 2.167900 CTCCCTCCGTCCGAAAATACTT 59.832 50.000 0.00 0.00 0.00 2.24
6119 7732 2.568509 TCCCTCCGTCCGAAAATACTTT 59.431 45.455 0.00 0.00 0.00 2.66
6120 7733 3.008266 TCCCTCCGTCCGAAAATACTTTT 59.992 43.478 0.00 0.00 35.12 2.27
6121 7734 3.754850 CCCTCCGTCCGAAAATACTTTTT 59.245 43.478 0.00 0.00 37.75 1.94
6122 7735 4.379082 CCCTCCGTCCGAAAATACTTTTTG 60.379 45.833 0.00 0.00 35.20 2.44
6132 7745 6.919721 CGAAAATACTTTTTGGAGGAATGGA 58.080 36.000 0.00 0.00 35.20 3.41
6133 7746 7.547227 CGAAAATACTTTTTGGAGGAATGGAT 58.453 34.615 0.00 0.00 35.20 3.41
6134 7747 7.489113 CGAAAATACTTTTTGGAGGAATGGATG 59.511 37.037 0.00 0.00 35.20 3.51
6135 7748 7.797121 AAATACTTTTTGGAGGAATGGATGT 57.203 32.000 0.00 0.00 0.00 3.06
6136 7749 8.893563 AAATACTTTTTGGAGGAATGGATGTA 57.106 30.769 0.00 0.00 0.00 2.29
6137 7750 9.492730 AAATACTTTTTGGAGGAATGGATGTAT 57.507 29.630 0.00 0.00 0.00 2.29
6138 7751 8.697507 ATACTTTTTGGAGGAATGGATGTATC 57.302 34.615 0.00 0.00 0.00 2.24
6139 7752 6.735556 ACTTTTTGGAGGAATGGATGTATCT 58.264 36.000 0.00 0.00 0.00 1.98
6140 7753 7.872138 ACTTTTTGGAGGAATGGATGTATCTA 58.128 34.615 0.00 0.00 0.00 1.98
6141 7754 7.995488 ACTTTTTGGAGGAATGGATGTATCTAG 59.005 37.037 0.00 0.00 0.00 2.43
6142 7755 7.690454 TTTTGGAGGAATGGATGTATCTAGA 57.310 36.000 0.00 0.00 0.00 2.43
6143 7756 6.672266 TTGGAGGAATGGATGTATCTAGAC 57.328 41.667 0.00 0.00 0.00 2.59
6144 7757 4.767409 TGGAGGAATGGATGTATCTAGACG 59.233 45.833 0.00 0.00 0.00 4.18
6145 7758 4.767928 GGAGGAATGGATGTATCTAGACGT 59.232 45.833 0.00 0.00 0.00 4.34
6146 7759 5.944599 GGAGGAATGGATGTATCTAGACGTA 59.055 44.000 0.00 0.00 0.00 3.57
6147 7760 6.603997 GGAGGAATGGATGTATCTAGACGTAT 59.396 42.308 0.00 0.00 0.00 3.06
6148 7761 7.122948 GGAGGAATGGATGTATCTAGACGTATT 59.877 40.741 0.00 0.00 0.00 1.89
6149 7762 7.831753 AGGAATGGATGTATCTAGACGTATTG 58.168 38.462 0.00 0.00 0.00 1.90
6150 7763 7.451877 AGGAATGGATGTATCTAGACGTATTGT 59.548 37.037 0.00 0.00 0.00 2.71
6151 7764 8.737175 GGAATGGATGTATCTAGACGTATTGTA 58.263 37.037 0.00 0.00 0.00 2.41
6152 7765 9.776158 GAATGGATGTATCTAGACGTATTGTAG 57.224 37.037 0.00 0.00 0.00 2.74
6153 7766 8.865420 ATGGATGTATCTAGACGTATTGTAGT 57.135 34.615 0.00 0.00 0.00 2.73
6154 7767 8.687292 TGGATGTATCTAGACGTATTGTAGTT 57.313 34.615 0.00 0.00 0.00 2.24
6155 7768 8.781196 TGGATGTATCTAGACGTATTGTAGTTC 58.219 37.037 0.00 0.00 0.00 3.01
6156 7769 9.001542 GGATGTATCTAGACGTATTGTAGTTCT 57.998 37.037 0.00 0.00 0.00 3.01
6166 7779 9.001542 AGACGTATTGTAGTTCTAGATACATCC 57.998 37.037 6.96 0.00 32.24 3.51
6167 7780 8.687292 ACGTATTGTAGTTCTAGATACATCCA 57.313 34.615 6.96 0.00 32.24 3.41
6168 7781 9.298250 ACGTATTGTAGTTCTAGATACATCCAT 57.702 33.333 6.96 2.16 32.24 3.41
6177 7790 9.851686 AGTTCTAGATACATCCATTTTTATGCA 57.148 29.630 0.00 0.00 0.00 3.96
6185 7798 9.976511 ATACATCCATTTTTATGCATTTCTCTG 57.023 29.630 3.54 0.00 0.00 3.35
6186 7799 8.070034 ACATCCATTTTTATGCATTTCTCTGA 57.930 30.769 3.54 0.00 0.00 3.27
6187 7800 7.977853 ACATCCATTTTTATGCATTTCTCTGAC 59.022 33.333 3.54 0.00 0.00 3.51
6188 7801 7.465353 TCCATTTTTATGCATTTCTCTGACA 57.535 32.000 3.54 0.00 0.00 3.58
6189 7802 7.894708 TCCATTTTTATGCATTTCTCTGACAA 58.105 30.769 3.54 0.00 0.00 3.18
6190 7803 8.030692 TCCATTTTTATGCATTTCTCTGACAAG 58.969 33.333 3.54 0.00 0.00 3.16
6191 7804 7.816031 CCATTTTTATGCATTTCTCTGACAAGT 59.184 33.333 3.54 0.00 0.00 3.16
6192 7805 9.844790 CATTTTTATGCATTTCTCTGACAAGTA 57.155 29.630 3.54 0.00 0.00 2.24
6197 7810 6.500684 TGCATTTCTCTGACAAGTATTTCC 57.499 37.500 0.00 0.00 0.00 3.13
6198 7811 5.122239 TGCATTTCTCTGACAAGTATTTCCG 59.878 40.000 0.00 0.00 0.00 4.30
6199 7812 5.447818 GCATTTCTCTGACAAGTATTTCCGG 60.448 44.000 0.00 0.00 0.00 5.14
6200 7813 5.477607 TTTCTCTGACAAGTATTTCCGGA 57.522 39.130 0.00 0.00 0.00 5.14
6201 7814 4.451629 TCTCTGACAAGTATTTCCGGAC 57.548 45.455 1.83 0.00 0.00 4.79
6202 7815 3.119602 TCTCTGACAAGTATTTCCGGACG 60.120 47.826 1.83 0.00 0.00 4.79
6203 7816 2.094390 TCTGACAAGTATTTCCGGACGG 60.094 50.000 1.83 3.96 0.00 4.79
6204 7817 1.894466 TGACAAGTATTTCCGGACGGA 59.106 47.619 1.83 9.76 43.52 4.69
6205 7818 2.094390 TGACAAGTATTTCCGGACGGAG 60.094 50.000 13.64 3.15 46.06 4.63
6206 7819 1.206371 ACAAGTATTTCCGGACGGAGG 59.794 52.381 13.64 0.00 46.06 4.30
6207 7820 0.828677 AAGTATTTCCGGACGGAGGG 59.171 55.000 13.64 0.00 46.06 4.30
6208 7821 0.032813 AGTATTTCCGGACGGAGGGA 60.033 55.000 13.64 4.95 46.06 4.20
6209 7822 0.388294 GTATTTCCGGACGGAGGGAG 59.612 60.000 13.64 0.00 46.06 4.30
6210 7823 0.032813 TATTTCCGGACGGAGGGAGT 60.033 55.000 13.64 0.00 46.06 3.85
6211 7824 0.032813 ATTTCCGGACGGAGGGAGTA 60.033 55.000 13.64 0.00 46.06 2.59
6212 7825 0.967380 TTTCCGGACGGAGGGAGTAC 60.967 60.000 13.64 0.00 46.06 2.73
6218 7831 2.108970 GGACGGAGGGAGTACAATCTT 58.891 52.381 0.00 0.00 0.00 2.40
6230 7843 5.312120 AGTACAATCTTGTGAGGTCTACG 57.688 43.478 5.84 0.00 42.31 3.51
6256 7869 5.411669 CCTACACCAGTTGAAACCTCATAAC 59.588 44.000 0.00 0.00 0.00 1.89
6310 7925 1.153842 GCGCTGGGCAATTTACCAC 60.154 57.895 12.19 0.00 42.87 4.16
6419 8034 1.200716 TCGTGGTACGGTGTCAATCTC 59.799 52.381 1.24 0.00 42.81 2.75
6429 8044 2.939103 GGTGTCAATCTCCGATTCTTGG 59.061 50.000 0.00 0.00 0.00 3.61
6430 8045 2.939103 GTGTCAATCTCCGATTCTTGGG 59.061 50.000 0.00 0.00 0.00 4.12
6451 8068 1.068588 TCACGGGACACTTGTTCAGAG 59.931 52.381 0.00 0.00 0.00 3.35
6459 8076 4.380531 GACACTTGTTCAGAGTCCATGAA 58.619 43.478 0.00 0.00 37.19 2.57
6502 8126 4.795268 CATCAGCTTACCATGATCATTGC 58.205 43.478 5.16 5.95 33.91 3.56
6503 8127 3.216800 TCAGCTTACCATGATCATTGCC 58.783 45.455 5.16 0.00 0.00 4.52
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.140717 GTCAACCGACCGATGTTTTCT 58.859 47.619 0.00 0.00 36.02 2.52
1 2 2.589338 GTCAACCGACCGATGTTTTC 57.411 50.000 0.00 0.00 36.02 2.29
14 15 1.658114 GAAAAGCCGGTGGTCAACC 59.342 57.895 1.90 0.00 46.60 3.77
15 16 1.658114 GGAAAAGCCGGTGGTCAAC 59.342 57.895 1.90 0.00 0.00 3.18
16 17 1.529713 GGGAAAAGCCGGTGGTCAA 60.530 57.895 1.90 0.00 37.63 3.18
17 18 2.075355 ATGGGAAAAGCCGGTGGTCA 62.075 55.000 1.90 0.00 37.63 4.02
18 19 0.898326 AATGGGAAAAGCCGGTGGTC 60.898 55.000 1.90 0.00 37.63 4.02
19 20 0.471022 AAATGGGAAAAGCCGGTGGT 60.471 50.000 1.90 0.00 37.63 4.16
20 21 0.246360 GAAATGGGAAAAGCCGGTGG 59.754 55.000 1.90 0.00 37.63 4.61
21 22 0.246360 GGAAATGGGAAAAGCCGGTG 59.754 55.000 1.90 0.00 37.63 4.94
22 23 0.178947 TGGAAATGGGAAAAGCCGGT 60.179 50.000 1.90 0.00 37.63 5.28
23 24 0.972883 TTGGAAATGGGAAAAGCCGG 59.027 50.000 0.00 0.00 37.63 6.13
24 25 2.735126 CGATTGGAAATGGGAAAAGCCG 60.735 50.000 0.00 0.00 37.63 5.52
25 26 2.892374 CGATTGGAAATGGGAAAAGCC 58.108 47.619 0.00 0.00 0.00 4.35
26 27 2.270923 GCGATTGGAAATGGGAAAAGC 58.729 47.619 0.00 0.00 0.00 3.51
27 28 2.418609 GGGCGATTGGAAATGGGAAAAG 60.419 50.000 0.00 0.00 0.00 2.27
28 29 1.552792 GGGCGATTGGAAATGGGAAAA 59.447 47.619 0.00 0.00 0.00 2.29
29 30 1.190643 GGGCGATTGGAAATGGGAAA 58.809 50.000 0.00 0.00 0.00 3.13
30 31 0.040351 TGGGCGATTGGAAATGGGAA 59.960 50.000 0.00 0.00 0.00 3.97
31 32 0.261402 ATGGGCGATTGGAAATGGGA 59.739 50.000 0.00 0.00 0.00 4.37
32 33 0.675633 GATGGGCGATTGGAAATGGG 59.324 55.000 0.00 0.00 0.00 4.00
33 34 0.675633 GGATGGGCGATTGGAAATGG 59.324 55.000 0.00 0.00 0.00 3.16
34 35 0.311790 CGGATGGGCGATTGGAAATG 59.688 55.000 0.00 0.00 0.00 2.32
35 36 1.455383 GCGGATGGGCGATTGGAAAT 61.455 55.000 0.00 0.00 0.00 2.17
36 37 2.118404 GCGGATGGGCGATTGGAAA 61.118 57.895 0.00 0.00 0.00 3.13
37 38 2.515991 GCGGATGGGCGATTGGAA 60.516 61.111 0.00 0.00 0.00 3.53
38 39 4.562425 GGCGGATGGGCGATTGGA 62.562 66.667 0.00 0.00 0.00 3.53
49 50 1.561542 AGACTGAATTTGGAGGCGGAT 59.438 47.619 0.00 0.00 0.00 4.18
320 324 2.985847 GTGTGCTTGAGGTGGGGC 60.986 66.667 0.00 0.00 0.00 5.80
957 1199 0.392729 CGGTGTAGTCGAGGAGAGGT 60.393 60.000 0.00 0.00 0.00 3.85
963 1205 0.738762 TCTCGTCGGTGTAGTCGAGG 60.739 60.000 12.23 0.00 45.14 4.63
1017 1259 1.595929 GAAGTGGGGCGACACGAAA 60.596 57.895 0.00 0.00 45.80 3.46
1098 1340 3.368501 AGCTCCAGCCCCTCCCTA 61.369 66.667 0.00 0.00 43.38 3.53
1227 1469 1.139498 TCCCCTGCAGAAACCCATCA 61.139 55.000 17.39 0.00 0.00 3.07
1450 1692 4.154015 TCAGGTACAAATTCGCATCAACAG 59.846 41.667 0.00 0.00 0.00 3.16
1460 1702 2.678336 CGCTTCCCTCAGGTACAAATTC 59.322 50.000 0.00 0.00 0.00 2.17
1471 1713 7.120873 GTCAGTTATATATACTCGCTTCCCTCA 59.879 40.741 0.00 0.00 0.00 3.86
1536 1851 6.974048 TCATAATTCATCAACAAATCGCTTGG 59.026 34.615 2.71 0.00 39.56 3.61
1541 1856 9.110617 GCACTATCATAATTCATCAACAAATCG 57.889 33.333 0.00 0.00 0.00 3.34
1566 1890 3.057526 ACCTTTCCTAAGCGAAACATTGC 60.058 43.478 0.00 0.00 0.00 3.56
1727 2077 6.932400 TCATGTGACGAGTTAAACCTTTATGT 59.068 34.615 0.00 0.00 0.00 2.29
1728 2078 7.234384 GTCATGTGACGAGTTAAACCTTTATG 58.766 38.462 0.00 0.00 35.12 1.90
1729 2079 7.360575 GTCATGTGACGAGTTAAACCTTTAT 57.639 36.000 0.00 0.00 35.12 1.40
1730 2080 6.774354 GTCATGTGACGAGTTAAACCTTTA 57.226 37.500 0.00 0.00 35.12 1.85
1823 2173 8.341173 GGAAGATTAACAAGCTAACATGAGATG 58.659 37.037 0.00 0.00 0.00 2.90
1877 2227 5.835280 ACCAATCTCATTTTGTCCAGAAACT 59.165 36.000 0.00 0.00 0.00 2.66
2088 2438 4.122776 GAGCATAAACAGTGATGACCGAT 58.877 43.478 0.00 0.00 0.00 4.18
2128 2478 9.927668 CCATTGTTCTAAAAAGATGGTTGTAAT 57.072 29.630 0.00 0.00 31.61 1.89
2130 2480 7.014711 TGCCATTGTTCTAAAAAGATGGTTGTA 59.985 33.333 0.00 0.00 37.08 2.41
2131 2481 6.183360 TGCCATTGTTCTAAAAAGATGGTTGT 60.183 34.615 0.00 0.00 37.08 3.32
2132 2482 6.222389 TGCCATTGTTCTAAAAAGATGGTTG 58.778 36.000 0.00 0.00 37.08 3.77
2134 2484 6.418057 TTGCCATTGTTCTAAAAAGATGGT 57.582 33.333 0.00 0.00 37.08 3.55
2161 2515 9.449719 ACTTGAAGTAATCCATCGAATTTAGTT 57.550 29.630 0.00 0.00 0.00 2.24
2293 2755 6.692486 CCACAAAGTAGACACTTGAGATAGT 58.308 40.000 2.57 0.00 44.41 2.12
2503 2965 5.867330 TCCCAAAACTGGTTAAGAATACGA 58.133 37.500 0.00 0.00 0.00 3.43
2825 3287 4.783055 TGCAAAGGTCAGTTAGGTTACAA 58.217 39.130 0.00 0.00 0.00 2.41
3363 3825 1.604308 CCACTGGCACCATGCTGAA 60.604 57.895 0.13 0.00 44.28 3.02
3512 3974 6.859420 TCTTCAAACATTTCATCAGAACGA 57.141 33.333 0.00 0.00 32.39 3.85
3608 4070 5.489792 TCTTCCTCTTTGTAGATGCAACT 57.510 39.130 0.86 0.86 0.00 3.16
3754 4216 7.766278 TCATCTCCTCAGCTTTTAGTATTTCAC 59.234 37.037 0.00 0.00 0.00 3.18
3953 4415 1.055040 AACTCACCTCAGAGCAGCTT 58.945 50.000 0.00 0.00 39.26 3.74
3972 4434 0.250510 TGGTGGCACTGCGTAAATCA 60.251 50.000 18.45 0.11 0.00 2.57
4015 4509 8.206126 TCCTATTGATGCATAACCAGATAAGA 57.794 34.615 0.00 0.00 0.00 2.10
4063 4558 1.001068 TCAACAAATCTACACCCGCGA 59.999 47.619 8.23 0.00 0.00 5.87
4064 4559 1.434555 TCAACAAATCTACACCCGCG 58.565 50.000 0.00 0.00 0.00 6.46
4349 4852 3.573967 AGCTTGTATGGGTTTTGTGAAGG 59.426 43.478 0.00 0.00 0.00 3.46
4631 6127 5.356882 TGAACTTAAGAATTGAAGTGCCG 57.643 39.130 10.09 0.00 36.05 5.69
4759 6255 2.950309 CCATTGAAAGATGAGCCCTCAG 59.050 50.000 4.16 0.00 43.61 3.35
4995 6491 1.922447 ACCCAATATCAGGACTGGCAA 59.078 47.619 0.00 0.00 0.00 4.52
5034 6530 3.190118 GCAATCTCACTTTCTGGTCCAAG 59.810 47.826 0.00 0.00 0.00 3.61
5039 6535 4.899352 AGTAGCAATCTCACTTTCTGGT 57.101 40.909 0.00 0.00 0.00 4.00
5054 6550 3.057019 CAAGTTGCACGTCTTAGTAGCA 58.943 45.455 0.00 0.00 0.00 3.49
5060 6556 1.139256 TCACCCAAGTTGCACGTCTTA 59.861 47.619 0.00 0.00 0.00 2.10
5105 6601 0.449388 GCTCATTCTTGGCCAGAACG 59.551 55.000 16.66 10.95 44.70 3.95
5107 6603 1.830279 CAGCTCATTCTTGGCCAGAA 58.170 50.000 16.66 16.66 46.01 3.02
5151 6647 1.950828 CCTTGCTCGCTCTGATCATT 58.049 50.000 0.00 0.00 0.00 2.57
5168 6664 1.220206 CTCCTCATGCTCGTTGCCT 59.780 57.895 0.00 0.00 42.00 4.75
5207 6703 1.106285 GGGTCACCATCAATTCTGCC 58.894 55.000 0.00 0.00 36.50 4.85
5250 6746 0.035056 CCACCCACAGAATCCAGGAC 60.035 60.000 0.00 0.00 0.00 3.85
5378 6883 0.250513 GCAGGTTCTCGGAGGTTGAT 59.749 55.000 4.96 0.00 0.00 2.57
5420 6925 3.134623 TGTCAACCTCAAAGAAGCTCTCA 59.865 43.478 0.00 0.00 0.00 3.27
5436 6941 0.895100 TCCCTGCAATGCCTGTCAAC 60.895 55.000 1.53 0.00 0.00 3.18
5519 7027 2.616510 GCATGCATCATAGGGGAGTACC 60.617 54.545 14.21 0.00 39.11 3.34
5714 7312 2.174363 ACTTTGCCCTACAACGTACC 57.826 50.000 0.00 0.00 38.84 3.34
5782 7381 2.942376 TGTGCAATTGACGACTTCTGTT 59.058 40.909 10.34 0.00 0.00 3.16
5956 7569 6.379579 AGACTTATATTTAGGAACGGAGGGA 58.620 40.000 0.00 0.00 0.00 4.20
5957 7570 6.667558 AGACTTATATTTAGGAACGGAGGG 57.332 41.667 0.00 0.00 0.00 4.30
5958 7571 7.985752 ACAAAGACTTATATTTAGGAACGGAGG 59.014 37.037 0.00 0.00 0.00 4.30
5959 7572 8.943909 ACAAAGACTTATATTTAGGAACGGAG 57.056 34.615 0.00 0.00 0.00 4.63
5978 7591 9.958180 TGGTTCATAATGAAATCTCTACAAAGA 57.042 29.630 0.00 0.00 38.22 2.52
5979 7592 9.994432 GTGGTTCATAATGAAATCTCTACAAAG 57.006 33.333 0.00 0.00 38.22 2.77
5980 7593 9.513906 TGTGGTTCATAATGAAATCTCTACAAA 57.486 29.630 0.00 0.00 38.22 2.83
5981 7594 9.685276 ATGTGGTTCATAATGAAATCTCTACAA 57.315 29.630 0.00 0.00 38.22 2.41
5984 7597 9.476202 CGTATGTGGTTCATAATGAAATCTCTA 57.524 33.333 0.00 0.00 38.22 2.43
5985 7598 7.442364 CCGTATGTGGTTCATAATGAAATCTCT 59.558 37.037 0.00 0.00 38.22 3.10
5986 7599 7.441157 TCCGTATGTGGTTCATAATGAAATCTC 59.559 37.037 0.00 0.00 38.22 2.75
5987 7600 7.279615 TCCGTATGTGGTTCATAATGAAATCT 58.720 34.615 0.00 0.00 38.22 2.40
5988 7601 7.490962 TCCGTATGTGGTTCATAATGAAATC 57.509 36.000 0.00 0.00 38.22 2.17
5989 7602 7.502226 ACATCCGTATGTGGTTCATAATGAAAT 59.498 33.333 0.00 0.00 44.79 2.17
5990 7603 6.826231 ACATCCGTATGTGGTTCATAATGAAA 59.174 34.615 0.00 0.00 44.79 2.69
5991 7604 6.353323 ACATCCGTATGTGGTTCATAATGAA 58.647 36.000 0.00 0.00 44.79 2.57
5992 7605 5.924356 ACATCCGTATGTGGTTCATAATGA 58.076 37.500 0.00 0.00 44.79 2.57
5993 7606 7.905604 ATACATCCGTATGTGGTTCATAATG 57.094 36.000 3.56 0.00 45.99 1.90
5996 7609 9.689501 TCTATATACATCCGTATGTGGTTCATA 57.310 33.333 3.56 0.00 45.99 2.15
5997 7610 8.589701 TCTATATACATCCGTATGTGGTTCAT 57.410 34.615 3.56 0.00 45.99 2.57
5998 7611 8.466798 CATCTATATACATCCGTATGTGGTTCA 58.533 37.037 3.56 0.00 45.99 3.18
5999 7612 7.435488 GCATCTATATACATCCGTATGTGGTTC 59.565 40.741 3.56 0.00 45.99 3.62
6000 7613 7.093509 TGCATCTATATACATCCGTATGTGGTT 60.094 37.037 3.56 0.00 45.99 3.67
6001 7614 6.379988 TGCATCTATATACATCCGTATGTGGT 59.620 38.462 3.56 0.00 45.99 4.16
6002 7615 6.805713 TGCATCTATATACATCCGTATGTGG 58.194 40.000 3.56 0.00 45.99 4.17
6003 7616 8.877808 AATGCATCTATATACATCCGTATGTG 57.122 34.615 3.56 0.00 45.99 3.21
6008 7621 9.944376 ACTTAAAATGCATCTATATACATCCGT 57.056 29.630 0.00 0.00 0.00 4.69
6020 7633 8.844244 GGATGAATCTACACTTAAAATGCATCT 58.156 33.333 0.00 0.00 0.00 2.90
6021 7634 8.623903 TGGATGAATCTACACTTAAAATGCATC 58.376 33.333 0.00 0.00 0.00 3.91
6022 7635 8.523915 TGGATGAATCTACACTTAAAATGCAT 57.476 30.769 0.00 0.00 0.00 3.96
6023 7636 7.936496 TGGATGAATCTACACTTAAAATGCA 57.064 32.000 0.00 0.00 0.00 3.96
6024 7637 9.807649 AAATGGATGAATCTACACTTAAAATGC 57.192 29.630 0.00 0.00 0.00 3.56
6027 7640 9.638239 GCAAAATGGATGAATCTACACTTAAAA 57.362 29.630 0.00 0.00 0.00 1.52
6028 7641 9.023962 AGCAAAATGGATGAATCTACACTTAAA 57.976 29.630 0.00 0.00 0.00 1.52
6029 7642 8.579850 AGCAAAATGGATGAATCTACACTTAA 57.420 30.769 0.00 0.00 0.00 1.85
6030 7643 7.283127 GGAGCAAAATGGATGAATCTACACTTA 59.717 37.037 0.00 0.00 0.00 2.24
6031 7644 6.096001 GGAGCAAAATGGATGAATCTACACTT 59.904 38.462 0.00 0.00 0.00 3.16
6032 7645 5.591877 GGAGCAAAATGGATGAATCTACACT 59.408 40.000 0.00 0.00 0.00 3.55
6033 7646 5.504665 CGGAGCAAAATGGATGAATCTACAC 60.505 44.000 0.00 0.00 0.00 2.90
6034 7647 4.576053 CGGAGCAAAATGGATGAATCTACA 59.424 41.667 0.00 0.00 0.00 2.74
6035 7648 4.576463 ACGGAGCAAAATGGATGAATCTAC 59.424 41.667 0.00 0.00 0.00 2.59
6036 7649 4.780815 ACGGAGCAAAATGGATGAATCTA 58.219 39.130 0.00 0.00 0.00 1.98
6037 7650 3.624777 ACGGAGCAAAATGGATGAATCT 58.375 40.909 0.00 0.00 0.00 2.40
6038 7651 5.009010 ACATACGGAGCAAAATGGATGAATC 59.991 40.000 0.00 0.00 0.00 2.52
6039 7652 4.889409 ACATACGGAGCAAAATGGATGAAT 59.111 37.500 0.00 0.00 0.00 2.57
6040 7653 4.269183 ACATACGGAGCAAAATGGATGAA 58.731 39.130 0.00 0.00 0.00 2.57
6041 7654 3.884895 ACATACGGAGCAAAATGGATGA 58.115 40.909 0.00 0.00 0.00 2.92
6042 7655 4.816385 ACTACATACGGAGCAAAATGGATG 59.184 41.667 0.00 0.00 0.00 3.51
6043 7656 5.036117 ACTACATACGGAGCAAAATGGAT 57.964 39.130 0.00 0.00 0.00 3.41
6044 7657 4.439057 GACTACATACGGAGCAAAATGGA 58.561 43.478 0.00 0.00 0.00 3.41
6045 7658 3.560068 GGACTACATACGGAGCAAAATGG 59.440 47.826 0.00 0.00 0.00 3.16
6046 7659 4.034048 GTGGACTACATACGGAGCAAAATG 59.966 45.833 0.00 0.00 0.00 2.32
6047 7660 4.189231 GTGGACTACATACGGAGCAAAAT 58.811 43.478 0.00 0.00 0.00 1.82
6048 7661 3.592059 GTGGACTACATACGGAGCAAAA 58.408 45.455 0.00 0.00 0.00 2.44
6049 7662 2.093869 GGTGGACTACATACGGAGCAAA 60.094 50.000 0.00 0.00 0.00 3.68
6050 7663 1.479323 GGTGGACTACATACGGAGCAA 59.521 52.381 0.00 0.00 0.00 3.91
6051 7664 1.108776 GGTGGACTACATACGGAGCA 58.891 55.000 0.00 0.00 0.00 4.26
6052 7665 1.400737 AGGTGGACTACATACGGAGC 58.599 55.000 0.00 0.00 0.00 4.70
6053 7666 3.564644 CACTAGGTGGACTACATACGGAG 59.435 52.174 0.00 0.00 0.00 4.63
6054 7667 3.548770 CACTAGGTGGACTACATACGGA 58.451 50.000 0.00 0.00 0.00 4.69
6055 7668 3.984508 CACTAGGTGGACTACATACGG 57.015 52.381 0.00 0.00 0.00 4.02
6066 7679 8.072564 GTCTGTGTAGAGATTCCACTAGGTGG 62.073 50.000 10.16 10.16 43.40 4.61
6067 7680 4.950475 TCTGTGTAGAGATTCCACTAGGTG 59.050 45.833 0.00 0.00 35.89 4.00
6068 7681 4.951094 GTCTGTGTAGAGATTCCACTAGGT 59.049 45.833 0.00 0.00 32.48 3.08
6069 7682 5.197451 AGTCTGTGTAGAGATTCCACTAGG 58.803 45.833 0.00 0.00 32.48 3.02
6070 7683 6.151985 ACAAGTCTGTGTAGAGATTCCACTAG 59.848 42.308 0.00 0.00 33.30 2.57
6071 7684 6.010850 ACAAGTCTGTGTAGAGATTCCACTA 58.989 40.000 0.00 0.00 33.30 2.74
6072 7685 4.835615 ACAAGTCTGTGTAGAGATTCCACT 59.164 41.667 0.00 0.00 33.30 4.00
6073 7686 5.140747 ACAAGTCTGTGTAGAGATTCCAC 57.859 43.478 0.00 0.00 33.30 4.02
6074 7687 6.010850 AGTACAAGTCTGTGTAGAGATTCCA 58.989 40.000 0.00 0.00 36.96 3.53
6075 7688 6.404954 GGAGTACAAGTCTGTGTAGAGATTCC 60.405 46.154 0.00 0.00 36.96 3.01
6076 7689 6.404954 GGGAGTACAAGTCTGTGTAGAGATTC 60.405 46.154 0.00 0.00 36.96 2.52
6077 7690 5.419471 GGGAGTACAAGTCTGTGTAGAGATT 59.581 44.000 0.00 0.00 36.96 2.40
6078 7691 4.951094 GGGAGTACAAGTCTGTGTAGAGAT 59.049 45.833 0.00 0.00 36.96 2.75
6079 7692 4.043059 AGGGAGTACAAGTCTGTGTAGAGA 59.957 45.833 0.00 0.00 36.96 3.10
6080 7693 4.337145 AGGGAGTACAAGTCTGTGTAGAG 58.663 47.826 0.00 0.00 36.96 2.43
6081 7694 4.333690 GAGGGAGTACAAGTCTGTGTAGA 58.666 47.826 0.00 0.00 36.96 2.59
6082 7695 3.444388 GGAGGGAGTACAAGTCTGTGTAG 59.556 52.174 0.00 0.00 36.96 2.74
6083 7696 3.428532 GGAGGGAGTACAAGTCTGTGTA 58.571 50.000 0.00 0.00 36.96 2.90
6084 7697 2.249139 GGAGGGAGTACAAGTCTGTGT 58.751 52.381 0.00 0.00 36.96 3.72
6085 7698 1.202582 CGGAGGGAGTACAAGTCTGTG 59.797 57.143 0.00 0.00 36.96 3.66
6086 7699 1.203025 ACGGAGGGAGTACAAGTCTGT 60.203 52.381 0.00 0.00 39.75 3.41
6087 7700 1.473278 GACGGAGGGAGTACAAGTCTG 59.527 57.143 0.00 0.00 0.00 3.51
6088 7701 1.616456 GGACGGAGGGAGTACAAGTCT 60.616 57.143 0.00 0.00 0.00 3.24
6089 7702 0.816373 GGACGGAGGGAGTACAAGTC 59.184 60.000 0.00 0.00 0.00 3.01
6090 7703 0.964358 CGGACGGAGGGAGTACAAGT 60.964 60.000 0.00 0.00 0.00 3.16
6091 7704 0.679002 TCGGACGGAGGGAGTACAAG 60.679 60.000 0.00 0.00 0.00 3.16
6092 7705 0.251297 TTCGGACGGAGGGAGTACAA 60.251 55.000 0.00 0.00 0.00 2.41
6093 7706 0.251297 TTTCGGACGGAGGGAGTACA 60.251 55.000 0.00 0.00 0.00 2.90
6094 7707 0.890683 TTTTCGGACGGAGGGAGTAC 59.109 55.000 0.00 0.00 0.00 2.73
6095 7708 1.856629 ATTTTCGGACGGAGGGAGTA 58.143 50.000 0.00 0.00 0.00 2.59
6096 7709 1.479730 GTATTTTCGGACGGAGGGAGT 59.520 52.381 0.00 0.00 0.00 3.85
6097 7710 1.755380 AGTATTTTCGGACGGAGGGAG 59.245 52.381 0.00 0.00 0.00 4.30
6098 7711 1.856629 AGTATTTTCGGACGGAGGGA 58.143 50.000 0.00 0.00 0.00 4.20
6099 7712 2.685850 AAGTATTTTCGGACGGAGGG 57.314 50.000 0.00 0.00 0.00 4.30
6111 7724 7.797121 ACATCCATTCCTCCAAAAAGTATTT 57.203 32.000 0.00 0.00 42.41 1.40
6112 7725 9.136323 GATACATCCATTCCTCCAAAAAGTATT 57.864 33.333 0.00 0.00 0.00 1.89
6113 7726 8.506083 AGATACATCCATTCCTCCAAAAAGTAT 58.494 33.333 0.00 0.00 0.00 2.12
6114 7727 7.872138 AGATACATCCATTCCTCCAAAAAGTA 58.128 34.615 0.00 0.00 0.00 2.24
6115 7728 6.735556 AGATACATCCATTCCTCCAAAAAGT 58.264 36.000 0.00 0.00 0.00 2.66
6116 7729 8.213679 TCTAGATACATCCATTCCTCCAAAAAG 58.786 37.037 0.00 0.00 0.00 2.27
6117 7730 7.993183 GTCTAGATACATCCATTCCTCCAAAAA 59.007 37.037 0.00 0.00 0.00 1.94
6118 7731 7.509546 GTCTAGATACATCCATTCCTCCAAAA 58.490 38.462 0.00 0.00 0.00 2.44
6119 7732 6.239317 CGTCTAGATACATCCATTCCTCCAAA 60.239 42.308 0.00 0.00 0.00 3.28
6120 7733 5.243954 CGTCTAGATACATCCATTCCTCCAA 59.756 44.000 0.00 0.00 0.00 3.53
6121 7734 4.767409 CGTCTAGATACATCCATTCCTCCA 59.233 45.833 0.00 0.00 0.00 3.86
6122 7735 4.767928 ACGTCTAGATACATCCATTCCTCC 59.232 45.833 0.00 0.00 0.00 4.30
6123 7736 5.968528 ACGTCTAGATACATCCATTCCTC 57.031 43.478 0.00 0.00 0.00 3.71
6124 7737 7.451877 ACAATACGTCTAGATACATCCATTCCT 59.548 37.037 0.00 0.00 0.00 3.36
6125 7738 7.603651 ACAATACGTCTAGATACATCCATTCC 58.396 38.462 0.00 0.00 0.00 3.01
6126 7739 9.776158 CTACAATACGTCTAGATACATCCATTC 57.224 37.037 0.00 0.00 0.00 2.67
6127 7740 9.298250 ACTACAATACGTCTAGATACATCCATT 57.702 33.333 0.00 0.00 0.00 3.16
6128 7741 8.865420 ACTACAATACGTCTAGATACATCCAT 57.135 34.615 0.00 0.00 0.00 3.41
6129 7742 8.687292 AACTACAATACGTCTAGATACATCCA 57.313 34.615 0.00 0.00 0.00 3.41
6130 7743 9.001542 AGAACTACAATACGTCTAGATACATCC 57.998 37.037 0.00 0.00 0.00 3.51
6140 7753 9.001542 GGATGTATCTAGAACTACAATACGTCT 57.998 37.037 9.65 0.00 38.23 4.18
6141 7754 8.781196 TGGATGTATCTAGAACTACAATACGTC 58.219 37.037 9.65 9.64 37.78 4.34
6142 7755 8.687292 TGGATGTATCTAGAACTACAATACGT 57.313 34.615 9.65 0.00 32.02 3.57
6151 7764 9.851686 TGCATAAAAATGGATGTATCTAGAACT 57.148 29.630 0.00 0.00 0.00 3.01
6159 7772 9.976511 CAGAGAAATGCATAAAAATGGATGTAT 57.023 29.630 0.00 0.00 32.82 2.29
6160 7773 9.187996 TCAGAGAAATGCATAAAAATGGATGTA 57.812 29.630 0.00 0.00 32.82 2.29
6161 7774 7.977853 GTCAGAGAAATGCATAAAAATGGATGT 59.022 33.333 0.00 0.00 32.82 3.06
6162 7775 7.977293 TGTCAGAGAAATGCATAAAAATGGATG 59.023 33.333 0.00 0.00 32.82 3.51
6163 7776 8.070034 TGTCAGAGAAATGCATAAAAATGGAT 57.930 30.769 0.00 0.00 33.93 3.41
6164 7777 7.465353 TGTCAGAGAAATGCATAAAAATGGA 57.535 32.000 0.00 0.00 0.00 3.41
6165 7778 7.816031 ACTTGTCAGAGAAATGCATAAAAATGG 59.184 33.333 0.00 0.00 0.00 3.16
6166 7779 8.752766 ACTTGTCAGAGAAATGCATAAAAATG 57.247 30.769 0.00 0.00 0.00 2.32
6171 7784 8.677300 GGAAATACTTGTCAGAGAAATGCATAA 58.323 33.333 0.00 0.00 0.00 1.90
6172 7785 7.011389 CGGAAATACTTGTCAGAGAAATGCATA 59.989 37.037 0.00 0.00 0.00 3.14
6173 7786 6.183360 CGGAAATACTTGTCAGAGAAATGCAT 60.183 38.462 0.00 0.00 0.00 3.96
6174 7787 5.122239 CGGAAATACTTGTCAGAGAAATGCA 59.878 40.000 0.00 0.00 0.00 3.96
6175 7788 5.447818 CCGGAAATACTTGTCAGAGAAATGC 60.448 44.000 0.00 0.00 0.00 3.56
6176 7789 5.874810 TCCGGAAATACTTGTCAGAGAAATG 59.125 40.000 0.00 0.00 0.00 2.32
6177 7790 5.875359 GTCCGGAAATACTTGTCAGAGAAAT 59.125 40.000 5.23 0.00 0.00 2.17
6178 7791 5.235516 GTCCGGAAATACTTGTCAGAGAAA 58.764 41.667 5.23 0.00 0.00 2.52
6179 7792 4.617530 CGTCCGGAAATACTTGTCAGAGAA 60.618 45.833 5.23 0.00 0.00 2.87
6180 7793 3.119602 CGTCCGGAAATACTTGTCAGAGA 60.120 47.826 5.23 0.00 0.00 3.10
6181 7794 3.179830 CGTCCGGAAATACTTGTCAGAG 58.820 50.000 5.23 0.00 0.00 3.35
6182 7795 2.094390 CCGTCCGGAAATACTTGTCAGA 60.094 50.000 5.23 0.00 37.50 3.27
6183 7796 2.094390 TCCGTCCGGAAATACTTGTCAG 60.094 50.000 5.23 0.00 42.05 3.51
6184 7797 1.894466 TCCGTCCGGAAATACTTGTCA 59.106 47.619 5.23 0.00 42.05 3.58
6185 7798 2.537401 CTCCGTCCGGAAATACTTGTC 58.463 52.381 5.23 0.00 44.66 3.18
6186 7799 1.206371 CCTCCGTCCGGAAATACTTGT 59.794 52.381 5.23 0.00 44.66 3.16
6187 7800 1.472728 CCCTCCGTCCGGAAATACTTG 60.473 57.143 5.23 0.00 44.66 3.16
6188 7801 0.828677 CCCTCCGTCCGGAAATACTT 59.171 55.000 5.23 0.00 44.66 2.24
6189 7802 0.032813 TCCCTCCGTCCGGAAATACT 60.033 55.000 5.23 0.00 44.66 2.12
6190 7803 0.388294 CTCCCTCCGTCCGGAAATAC 59.612 60.000 5.23 0.00 44.66 1.89
6191 7804 0.032813 ACTCCCTCCGTCCGGAAATA 60.033 55.000 5.23 0.00 44.66 1.40
6192 7805 0.032813 TACTCCCTCCGTCCGGAAAT 60.033 55.000 5.23 0.00 44.66 2.17
6193 7806 0.967380 GTACTCCCTCCGTCCGGAAA 60.967 60.000 5.23 0.00 44.66 3.13
6194 7807 1.379044 GTACTCCCTCCGTCCGGAA 60.379 63.158 5.23 0.00 44.66 4.30
6195 7808 2.141011 TTGTACTCCCTCCGTCCGGA 62.141 60.000 0.00 0.00 42.90 5.14
6196 7809 1.041447 ATTGTACTCCCTCCGTCCGG 61.041 60.000 0.00 0.00 0.00 5.14
6197 7810 0.384669 GATTGTACTCCCTCCGTCCG 59.615 60.000 0.00 0.00 0.00 4.79
6198 7811 1.777941 AGATTGTACTCCCTCCGTCC 58.222 55.000 0.00 0.00 0.00 4.79
6199 7812 2.496470 ACAAGATTGTACTCCCTCCGTC 59.504 50.000 0.00 0.00 40.16 4.79
6200 7813 2.233922 CACAAGATTGTACTCCCTCCGT 59.766 50.000 0.00 0.00 39.91 4.69
6201 7814 2.496070 TCACAAGATTGTACTCCCTCCG 59.504 50.000 0.00 0.00 39.91 4.63
6202 7815 3.118592 CCTCACAAGATTGTACTCCCTCC 60.119 52.174 0.00 0.00 39.91 4.30
6203 7816 3.515901 ACCTCACAAGATTGTACTCCCTC 59.484 47.826 0.00 0.00 39.91 4.30
6204 7817 3.515901 GACCTCACAAGATTGTACTCCCT 59.484 47.826 0.00 0.00 39.91 4.20
6205 7818 3.515901 AGACCTCACAAGATTGTACTCCC 59.484 47.826 0.00 0.00 39.91 4.30
6206 7819 4.810191 AGACCTCACAAGATTGTACTCC 57.190 45.455 0.00 0.00 39.91 3.85
6207 7820 5.333513 CGTAGACCTCACAAGATTGTACTC 58.666 45.833 0.00 0.00 39.91 2.59
6208 7821 4.380655 GCGTAGACCTCACAAGATTGTACT 60.381 45.833 0.00 0.00 39.91 2.73
6209 7822 3.858238 GCGTAGACCTCACAAGATTGTAC 59.142 47.826 0.00 0.00 39.91 2.90
6210 7823 3.119245 GGCGTAGACCTCACAAGATTGTA 60.119 47.826 0.00 0.00 39.91 2.41
6211 7824 2.353803 GGCGTAGACCTCACAAGATTGT 60.354 50.000 0.00 0.00 43.36 2.71
6212 7825 2.271800 GGCGTAGACCTCACAAGATTG 58.728 52.381 0.00 0.00 0.00 2.67
6230 7843 1.202891 AGGTTTCAACTGGTGTAGGGC 60.203 52.381 0.00 0.00 0.00 5.19
6419 8034 1.449601 CCCGTGACCCAAGAATCGG 60.450 63.158 0.00 0.00 38.05 4.18
6429 8044 0.179067 TGAACAAGTGTCCCGTGACC 60.179 55.000 0.00 0.00 41.01 4.02
6430 8045 1.202486 TCTGAACAAGTGTCCCGTGAC 60.202 52.381 0.00 0.00 42.12 3.67
6451 8068 5.220989 CCAGTGATTCATCATGTTCATGGAC 60.221 44.000 12.02 0.00 39.30 4.02
6459 8076 2.651455 CTGGCCAGTGATTCATCATGT 58.349 47.619 25.53 0.00 39.30 3.21
6465 8082 0.328926 TGATGCTGGCCAGTGATTCA 59.671 50.000 32.81 24.61 0.00 2.57
6466 8083 1.022735 CTGATGCTGGCCAGTGATTC 58.977 55.000 32.81 22.60 0.00 2.52
6497 8114 5.468072 AGACTAGAGCAAAATATCGGCAATG 59.532 40.000 0.00 0.00 0.00 2.82
6498 8115 5.615289 AGACTAGAGCAAAATATCGGCAAT 58.385 37.500 0.00 0.00 0.00 3.56
6502 8126 7.203910 AGTTGTAGACTAGAGCAAAATATCGG 58.796 38.462 0.00 0.00 36.65 4.18
6503 8127 8.635877 AAGTTGTAGACTAGAGCAAAATATCG 57.364 34.615 0.00 0.00 37.72 2.92


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.