Multiple sequence alignment - TraesCS4B01G080100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G080100 chr4B 100.000 3694 0 0 1 3694 77663407 77667100 0.000000e+00 6822.0
1 TraesCS4B01G080100 chr4B 88.444 450 36 10 2555 2994 646252405 646251962 2.530000e-146 529.0
2 TraesCS4B01G080100 chr4B 87.216 352 34 3 2990 3330 646248944 646248593 1.240000e-104 390.0
3 TraesCS4B01G080100 chr4D 95.665 3391 118 14 13 3386 52778339 52781717 0.000000e+00 5421.0
4 TraesCS4B01G080100 chr4A 93.834 2465 135 7 930 3386 544032816 544030361 0.000000e+00 3694.0
5 TraesCS4B01G080100 chr4A 94.186 946 40 6 12 947 544033769 544032829 0.000000e+00 1428.0
6 TraesCS4B01G080100 chr4A 89.140 442 33 9 2564 2994 645259487 645259050 1.510000e-148 536.0
7 TraesCS4B01G080100 chr4A 86.034 358 39 3 2990 3336 645257556 645257199 1.250000e-99 374.0
8 TraesCS4B01G080100 chr2B 89.140 442 31 11 2565 2994 799588896 799589332 5.430000e-148 534.0
9 TraesCS4B01G080100 chr2B 97.394 307 7 1 3388 3694 193907110 193906805 4.230000e-144 521.0
10 TraesCS4B01G080100 chr2B 97.068 307 8 1 3388 3694 461205789 461206094 1.970000e-142 516.0
11 TraesCS4B01G080100 chr2B 97.368 304 6 1 3388 3689 548362274 548361971 1.970000e-142 516.0
12 TraesCS4B01G080100 chr2B 88.251 366 30 5 2980 3334 799590756 799591119 3.410000e-115 425.0
13 TraesCS4B01G080100 chr6B 97.394 307 7 1 3388 3694 691178004 691177699 4.230000e-144 521.0
14 TraesCS4B01G080100 chr6B 92.568 148 11 0 3187 3334 94723291 94723144 2.890000e-51 213.0
15 TraesCS4B01G080100 chr6B 91.216 148 13 0 3187 3334 94849119 94848972 6.260000e-48 202.0
16 TraesCS4B01G080100 chr6B 77.989 368 37 26 2989 3339 477190615 477190275 1.350000e-44 191.0
17 TraesCS4B01G080100 chr3B 97.068 307 8 1 3388 3694 606999208 606999513 1.970000e-142 516.0
18 TraesCS4B01G080100 chr3B 96.764 309 8 1 3388 3694 500608199 500608507 7.070000e-142 514.0
19 TraesCS4B01G080100 chr3B 86.866 434 38 10 2563 2984 20066124 20066550 5.590000e-128 468.0
20 TraesCS4B01G080100 chr3A 96.743 307 10 0 3388 3694 423441922 423442228 2.540000e-141 512.0
21 TraesCS4B01G080100 chr1B 96.753 308 9 1 3388 3694 547676904 547677211 2.540000e-141 512.0
22 TraesCS4B01G080100 chr1B 96.875 32 0 1 2564 2594 563780571 563780540 7.000000e-03 52.8
23 TraesCS4B01G080100 chr7B 96.743 307 9 1 3388 3694 184462216 184462521 9.150000e-141 510.0
24 TraesCS4B01G080100 chr6A 88.140 430 32 12 2564 2989 63094399 63093985 9.220000e-136 494.0
25 TraesCS4B01G080100 chr6A 81.416 113 16 5 3221 3331 32028233 32028342 1.830000e-13 87.9
26 TraesCS4B01G080100 chr1D 86.175 434 39 15 2565 2994 467901116 467900700 2.020000e-122 449.0
27 TraesCS4B01G080100 chr2A 85.068 442 46 11 2564 2994 104786167 104785735 2.040000e-117 433.0
28 TraesCS4B01G080100 chr5B 90.968 155 13 1 3188 3341 296879686 296879532 1.340000e-49 207.0
29 TraesCS4B01G080100 chrUn 80.952 210 22 9 2989 3187 320011858 320012060 2.300000e-32 150.0
30 TraesCS4B01G080100 chrUn 80.952 210 22 9 2989 3187 322841635 322841837 2.300000e-32 150.0
31 TraesCS4B01G080100 chrUn 80.952 210 22 9 2989 3187 346199874 346199672 2.300000e-32 150.0
32 TraesCS4B01G080100 chrUn 80.952 210 22 9 2989 3187 367263293 367263091 2.300000e-32 150.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G080100 chr4B 77663407 77667100 3693 False 6822.0 6822 100.0000 1 3694 1 chr4B.!!$F1 3693
1 TraesCS4B01G080100 chr4B 646248593 646252405 3812 True 459.5 529 87.8300 2555 3330 2 chr4B.!!$R1 775
2 TraesCS4B01G080100 chr4D 52778339 52781717 3378 False 5421.0 5421 95.6650 13 3386 1 chr4D.!!$F1 3373
3 TraesCS4B01G080100 chr4A 544030361 544033769 3408 True 2561.0 3694 94.0100 12 3386 2 chr4A.!!$R1 3374
4 TraesCS4B01G080100 chr4A 645257199 645259487 2288 True 455.0 536 87.5870 2564 3336 2 chr4A.!!$R2 772
5 TraesCS4B01G080100 chr2B 799588896 799591119 2223 False 479.5 534 88.6955 2565 3334 2 chr2B.!!$F2 769

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
902 914 0.032952 TCCTCCACGACAACGGAAAG 59.967 55.0 0.0 0.0 44.46 2.62 F
1584 1640 0.324943 CCCGTGGTTGAGATTGACCT 59.675 55.0 0.0 0.0 36.86 3.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2263 2323 2.575735 TCATAGCCACCCTTGTTGATCA 59.424 45.455 0.0 0.0 0.0 2.92 R
3407 6559 0.032017 AGTCTAATCACGCCCCCTCT 60.032 55.000 0.0 0.0 0.0 3.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
53 58 5.744345 GTCGAACTACACTATGATCACAAGG 59.256 44.000 0.00 0.00 0.00 3.61
66 71 6.688637 TGATCACAAGGCAAATAGATGAAG 57.311 37.500 0.00 0.00 0.00 3.02
106 111 6.790319 ACTACCCAACAAATAAATGAGAGGT 58.210 36.000 0.00 0.00 0.00 3.85
110 115 8.747538 ACCCAACAAATAAATGAGAGGTATAC 57.252 34.615 0.00 0.00 0.00 1.47
164 169 8.561738 TTTCTGCTAAGGAAGTACAATTAAGG 57.438 34.615 0.00 0.00 0.00 2.69
165 170 6.650120 TCTGCTAAGGAAGTACAATTAAGGG 58.350 40.000 0.00 0.00 0.00 3.95
194 199 7.390440 CACTGGTTTTGACTACCTATCATTTCA 59.610 37.037 0.00 0.00 36.60 2.69
313 318 0.673333 ATCATCCACGCGTGCTCAAA 60.673 50.000 33.17 16.68 0.00 2.69
801 806 0.178973 CCCGGGTGGTTTTTCTTCCT 60.179 55.000 14.18 0.00 0.00 3.36
847 853 2.034066 CGTGTCTTGGTGGCCCAT 59.966 61.111 0.00 0.00 41.49 4.00
902 914 0.032952 TCCTCCACGACAACGGAAAG 59.967 55.000 0.00 0.00 44.46 2.62
903 915 0.032952 CCTCCACGACAACGGAAAGA 59.967 55.000 0.00 0.00 44.46 2.52
904 916 1.539496 CCTCCACGACAACGGAAAGAA 60.539 52.381 0.00 0.00 44.46 2.52
905 917 2.206750 CTCCACGACAACGGAAAGAAA 58.793 47.619 0.00 0.00 44.46 2.52
919 931 3.791353 GGAAAGAAAAATATTGCGGCTCG 59.209 43.478 0.00 0.00 0.00 5.03
1038 1086 6.210584 ACAACTTTTCCCTCAAAGAAAGAACA 59.789 34.615 0.25 0.00 37.24 3.18
1078 1128 1.520342 GTGAGCGATGGAGCAGGAC 60.520 63.158 0.00 0.00 40.15 3.85
1106 1156 1.152963 ACAAAAGTGCTGCCCGACT 60.153 52.632 0.00 0.00 0.00 4.18
1160 1210 4.479993 GCAGCCTCGCCACATCCT 62.480 66.667 0.00 0.00 0.00 3.24
1185 1235 3.758973 TTTGCAAGACGTGGCGGGA 62.759 57.895 0.00 0.00 0.00 5.14
1338 1388 2.668212 CGAAAGGCTCGCCAACCA 60.668 61.111 11.02 0.00 41.49 3.67
1345 1395 1.315257 GGCTCGCCAACCATGTGAAT 61.315 55.000 2.41 0.00 35.81 2.57
1426 1476 3.297620 GCACCCTTGCCACCACAG 61.298 66.667 0.00 0.00 43.66 3.66
1500 1556 1.030457 GATCCTACGGTGTCATCGGT 58.970 55.000 10.81 0.00 0.00 4.69
1584 1640 0.324943 CCCGTGGTTGAGATTGACCT 59.675 55.000 0.00 0.00 36.86 3.85
1625 1681 0.912486 GCCACCTACTTCATGGACCT 59.088 55.000 0.00 0.00 35.33 3.85
1627 1683 2.504175 GCCACCTACTTCATGGACCTTA 59.496 50.000 0.00 0.00 35.33 2.69
1875 1932 5.465532 TTCACTTATTTGATTTGCCAGCA 57.534 34.783 0.00 0.00 0.00 4.41
1913 1970 4.873817 TGATTTCTTGCAGGTTGTCATTG 58.126 39.130 0.00 0.00 0.00 2.82
1960 2017 9.108284 CATTAAACCACCAAAAAGTCTTGAATT 57.892 29.630 0.00 0.00 0.00 2.17
1961 2018 6.983474 AAACCACCAAAAAGTCTTGAATTG 57.017 33.333 0.00 0.00 0.00 2.32
2117 2177 3.381335 TGATAGGGACCTCAAGTTACCC 58.619 50.000 0.00 0.00 40.71 3.69
2132 2192 3.118738 AGTTACCCTCGCCATGTCTAAAG 60.119 47.826 0.00 0.00 0.00 1.85
2192 2252 7.624360 TGAAGAAAAGTACATTCGGCATTAT 57.376 32.000 0.00 0.00 32.04 1.28
2205 2265 4.013050 TCGGCATTATGATGAAACCAACA 58.987 39.130 0.85 0.00 35.16 3.33
2334 2394 3.442273 AGAGATCGTCTTTCTGACCAGAC 59.558 47.826 0.00 6.23 42.49 3.51
2336 2396 3.766591 AGATCGTCTTTCTGACCAGACAT 59.233 43.478 13.79 8.10 42.49 3.06
2354 2414 5.862323 CAGACATTTGAGCAGAAATTTGAGG 59.138 40.000 0.00 0.00 0.00 3.86
2411 2471 7.690256 AGATTGAAGACTTGGGTAACTTATGT 58.310 34.615 0.00 0.00 0.00 2.29
2582 2642 1.611977 CAACTAGATGATACCCCGCGA 59.388 52.381 8.23 0.00 0.00 5.87
2607 2667 3.119531 TGCTGCGGAAATTTTGTATCAGG 60.120 43.478 0.00 0.00 0.00 3.86
2611 2680 3.734902 GCGGAAATTTTGTATCAGGGCAG 60.735 47.826 0.00 0.00 0.00 4.85
2614 2683 4.706962 GGAAATTTTGTATCAGGGCAGACT 59.293 41.667 0.00 0.00 0.00 3.24
2747 2821 2.159085 GCTGGCCGAAGAGTACTAATGT 60.159 50.000 0.00 0.00 0.00 2.71
2787 2861 0.741915 GAAGGAGGTCGCTCTAGTGG 59.258 60.000 0.00 0.00 0.00 4.00
2861 2935 9.699703 GAATCTGAAGTCTAGTTTGTAAGAAGT 57.300 33.333 0.00 0.00 0.00 3.01
2869 2943 4.916983 AGTTTGTAAGAAGTTGCATGCA 57.083 36.364 18.46 18.46 0.00 3.96
3015 6152 2.907042 GAGAGGAGAGGAAGGGACAAAA 59.093 50.000 0.00 0.00 0.00 2.44
3061 6201 3.293337 TGCTTAGATCGGTAGCCAACTA 58.707 45.455 12.24 0.00 34.03 2.24
3064 6204 2.074729 AGATCGGTAGCCAACTAGCT 57.925 50.000 0.00 0.00 43.35 3.32
3110 6257 6.531950 ACATGCACTGTGAGAGACGAAAGT 62.532 45.833 12.86 0.00 42.29 2.66
3148 6295 0.690762 GGTGGCTTGTGGGAAGTAGA 59.309 55.000 0.00 0.00 0.00 2.59
3249 6397 2.592102 AGTAGTGGGAGGTACGTTGA 57.408 50.000 0.00 0.00 0.00 3.18
3386 6538 4.663592 TCCCCCTATTTTGTCCTTCTATCC 59.336 45.833 0.00 0.00 0.00 2.59
3387 6539 4.505039 CCCCCTATTTTGTCCTTCTATCCG 60.505 50.000 0.00 0.00 0.00 4.18
3388 6540 4.102681 CCCCTATTTTGTCCTTCTATCCGT 59.897 45.833 0.00 0.00 0.00 4.69
3389 6541 5.306160 CCCCTATTTTGTCCTTCTATCCGTA 59.694 44.000 0.00 0.00 0.00 4.02
3390 6542 6.456501 CCCTATTTTGTCCTTCTATCCGTAG 58.543 44.000 0.00 0.00 0.00 3.51
3409 6561 6.782298 CGTAGGATCGAAAGTATGTCTAGA 57.218 41.667 0.00 0.00 0.00 2.43
3410 6562 6.823531 CGTAGGATCGAAAGTATGTCTAGAG 58.176 44.000 0.00 0.00 0.00 2.43
3411 6563 6.128499 CGTAGGATCGAAAGTATGTCTAGAGG 60.128 46.154 0.00 0.00 0.00 3.69
3412 6564 5.074115 AGGATCGAAAGTATGTCTAGAGGG 58.926 45.833 0.00 0.00 0.00 4.30
3413 6565 4.218852 GGATCGAAAGTATGTCTAGAGGGG 59.781 50.000 0.00 0.00 0.00 4.79
3414 6566 3.563223 TCGAAAGTATGTCTAGAGGGGG 58.437 50.000 0.00 0.00 0.00 5.40
3415 6567 2.036089 CGAAAGTATGTCTAGAGGGGGC 59.964 54.545 0.00 0.00 0.00 5.80
3416 6568 1.705873 AAGTATGTCTAGAGGGGGCG 58.294 55.000 0.00 0.00 0.00 6.13
3417 6569 0.556747 AGTATGTCTAGAGGGGGCGT 59.443 55.000 0.00 0.00 0.00 5.68
3418 6570 0.674534 GTATGTCTAGAGGGGGCGTG 59.325 60.000 0.00 0.00 0.00 5.34
3419 6571 0.554305 TATGTCTAGAGGGGGCGTGA 59.446 55.000 0.00 0.00 0.00 4.35
3420 6572 0.105453 ATGTCTAGAGGGGGCGTGAT 60.105 55.000 0.00 0.00 0.00 3.06
3421 6573 0.325296 TGTCTAGAGGGGGCGTGATT 60.325 55.000 0.00 0.00 0.00 2.57
3422 6574 1.063492 TGTCTAGAGGGGGCGTGATTA 60.063 52.381 0.00 0.00 0.00 1.75
3423 6575 1.614413 GTCTAGAGGGGGCGTGATTAG 59.386 57.143 0.00 0.00 0.00 1.73
3424 6576 1.497716 TCTAGAGGGGGCGTGATTAGA 59.502 52.381 0.00 0.00 0.00 2.10
3425 6577 1.614413 CTAGAGGGGGCGTGATTAGAC 59.386 57.143 0.00 0.00 0.00 2.59
3426 6578 0.032017 AGAGGGGGCGTGATTAGACT 60.032 55.000 0.00 0.00 0.00 3.24
3427 6579 1.217183 AGAGGGGGCGTGATTAGACTA 59.783 52.381 0.00 0.00 0.00 2.59
3428 6580 1.340568 GAGGGGGCGTGATTAGACTAC 59.659 57.143 0.00 0.00 0.00 2.73
3429 6581 1.063114 AGGGGGCGTGATTAGACTACT 60.063 52.381 0.00 0.00 0.00 2.57
3430 6582 1.761198 GGGGGCGTGATTAGACTACTT 59.239 52.381 0.00 0.00 0.00 2.24
3431 6583 2.483188 GGGGGCGTGATTAGACTACTTG 60.483 54.545 0.00 0.00 0.00 3.16
3432 6584 2.429610 GGGGCGTGATTAGACTACTTGA 59.570 50.000 0.00 0.00 0.00 3.02
3433 6585 3.445857 GGGCGTGATTAGACTACTTGAC 58.554 50.000 0.00 0.00 0.00 3.18
3434 6586 3.119245 GGGCGTGATTAGACTACTTGACA 60.119 47.826 0.00 0.00 0.00 3.58
3435 6587 4.491676 GGCGTGATTAGACTACTTGACAA 58.508 43.478 0.00 0.00 0.00 3.18
3436 6588 4.927425 GGCGTGATTAGACTACTTGACAAA 59.073 41.667 0.00 0.00 0.00 2.83
3437 6589 5.407387 GGCGTGATTAGACTACTTGACAAAA 59.593 40.000 0.00 0.00 0.00 2.44
3438 6590 6.092259 GGCGTGATTAGACTACTTGACAAAAT 59.908 38.462 0.00 0.00 0.00 1.82
3439 6591 7.277098 GGCGTGATTAGACTACTTGACAAAATA 59.723 37.037 0.00 0.00 0.00 1.40
3440 6592 8.653338 GCGTGATTAGACTACTTGACAAAATAA 58.347 33.333 0.00 0.00 0.00 1.40
3449 6601 9.331106 GACTACTTGACAAAATAAAAGCTTAGC 57.669 33.333 0.00 0.00 0.00 3.09
3450 6602 8.297426 ACTACTTGACAAAATAAAAGCTTAGCC 58.703 33.333 0.00 0.00 0.00 3.93
3451 6603 7.290110 ACTTGACAAAATAAAAGCTTAGCCT 57.710 32.000 0.00 0.00 0.00 4.58
3452 6604 7.726216 ACTTGACAAAATAAAAGCTTAGCCTT 58.274 30.769 0.00 0.00 0.00 4.35
3453 6605 8.204160 ACTTGACAAAATAAAAGCTTAGCCTTT 58.796 29.630 0.00 6.07 36.65 3.11
3454 6606 8.956533 TTGACAAAATAAAAGCTTAGCCTTTT 57.043 26.923 6.10 11.53 44.63 2.27
3455 6607 8.587952 TGACAAAATAAAAGCTTAGCCTTTTC 57.412 30.769 6.10 0.00 42.35 2.29
3456 6608 7.655732 TGACAAAATAAAAGCTTAGCCTTTTCC 59.344 33.333 6.10 0.42 42.35 3.13
3457 6609 6.934645 ACAAAATAAAAGCTTAGCCTTTTCCC 59.065 34.615 6.10 0.00 42.35 3.97
3458 6610 6.680148 AAATAAAAGCTTAGCCTTTTCCCA 57.320 33.333 6.10 0.00 42.35 4.37
3459 6611 6.680148 AATAAAAGCTTAGCCTTTTCCCAA 57.320 33.333 6.10 0.00 42.35 4.12
3460 6612 6.874278 ATAAAAGCTTAGCCTTTTCCCAAT 57.126 33.333 6.10 0.00 42.35 3.16
3461 6613 5.567037 AAAAGCTTAGCCTTTTCCCAATT 57.433 34.783 0.00 0.00 40.05 2.32
3462 6614 5.567037 AAAGCTTAGCCTTTTCCCAATTT 57.433 34.783 0.00 0.00 31.25 1.82
3463 6615 5.567037 AAGCTTAGCCTTTTCCCAATTTT 57.433 34.783 0.00 0.00 0.00 1.82
3464 6616 6.680148 AAGCTTAGCCTTTTCCCAATTTTA 57.320 33.333 0.00 0.00 0.00 1.52
3465 6617 6.680148 AGCTTAGCCTTTTCCCAATTTTAA 57.320 33.333 0.00 0.00 0.00 1.52
3466 6618 7.257790 AGCTTAGCCTTTTCCCAATTTTAAT 57.742 32.000 0.00 0.00 0.00 1.40
3467 6619 7.689299 AGCTTAGCCTTTTCCCAATTTTAATT 58.311 30.769 0.00 0.00 0.00 1.40
3468 6620 7.824289 AGCTTAGCCTTTTCCCAATTTTAATTC 59.176 33.333 0.00 0.00 0.00 2.17
3469 6621 7.824289 GCTTAGCCTTTTCCCAATTTTAATTCT 59.176 33.333 0.00 0.00 0.00 2.40
3470 6622 9.371136 CTTAGCCTTTTCCCAATTTTAATTCTC 57.629 33.333 0.00 0.00 0.00 2.87
3471 6623 6.398095 AGCCTTTTCCCAATTTTAATTCTCG 58.602 36.000 0.00 0.00 0.00 4.04
3472 6624 5.580691 GCCTTTTCCCAATTTTAATTCTCGG 59.419 40.000 0.00 0.00 0.00 4.63
3473 6625 5.580691 CCTTTTCCCAATTTTAATTCTCGGC 59.419 40.000 0.00 0.00 0.00 5.54
3474 6626 5.730296 TTTCCCAATTTTAATTCTCGGCA 57.270 34.783 0.00 0.00 0.00 5.69
3475 6627 4.981806 TCCCAATTTTAATTCTCGGCAG 57.018 40.909 0.00 0.00 0.00 4.85
3476 6628 3.699038 TCCCAATTTTAATTCTCGGCAGG 59.301 43.478 0.00 0.00 0.00 4.85
3477 6629 3.447229 CCCAATTTTAATTCTCGGCAGGT 59.553 43.478 0.00 0.00 0.00 4.00
3478 6630 4.081697 CCCAATTTTAATTCTCGGCAGGTT 60.082 41.667 0.00 0.00 0.00 3.50
3479 6631 5.478407 CCAATTTTAATTCTCGGCAGGTTT 58.522 37.500 0.00 0.00 0.00 3.27
3480 6632 5.931724 CCAATTTTAATTCTCGGCAGGTTTT 59.068 36.000 0.00 0.00 0.00 2.43
3481 6633 7.093992 CCAATTTTAATTCTCGGCAGGTTTTA 58.906 34.615 0.00 0.00 0.00 1.52
3482 6634 7.275560 CCAATTTTAATTCTCGGCAGGTTTTAG 59.724 37.037 0.00 0.00 0.00 1.85
3483 6635 4.957759 TTAATTCTCGGCAGGTTTTAGC 57.042 40.909 0.00 0.00 0.00 3.09
3484 6636 2.489938 ATTCTCGGCAGGTTTTAGCA 57.510 45.000 0.00 0.00 0.00 3.49
3485 6637 2.264005 TTCTCGGCAGGTTTTAGCAA 57.736 45.000 0.00 0.00 0.00 3.91
3486 6638 1.519408 TCTCGGCAGGTTTTAGCAAC 58.481 50.000 0.00 0.00 0.00 4.17
3487 6639 1.071699 TCTCGGCAGGTTTTAGCAACT 59.928 47.619 0.00 0.00 0.00 3.16
3488 6640 1.880027 CTCGGCAGGTTTTAGCAACTT 59.120 47.619 0.00 0.00 0.00 2.66
3489 6641 3.071479 CTCGGCAGGTTTTAGCAACTTA 58.929 45.455 0.00 0.00 0.00 2.24
3490 6642 3.071479 TCGGCAGGTTTTAGCAACTTAG 58.929 45.455 0.00 0.00 0.00 2.18
3491 6643 2.414161 CGGCAGGTTTTAGCAACTTAGC 60.414 50.000 0.00 0.00 0.00 3.09
3492 6644 2.556622 GGCAGGTTTTAGCAACTTAGCA 59.443 45.455 0.00 0.00 36.85 3.49
3493 6645 3.565516 GCAGGTTTTAGCAACTTAGCAC 58.434 45.455 0.00 0.00 36.85 4.40
3494 6646 3.004315 GCAGGTTTTAGCAACTTAGCACA 59.996 43.478 0.00 0.00 36.85 4.57
3495 6647 4.499019 GCAGGTTTTAGCAACTTAGCACAA 60.499 41.667 0.00 0.00 36.85 3.33
3496 6648 5.215160 CAGGTTTTAGCAACTTAGCACAAG 58.785 41.667 0.00 0.00 36.85 3.16
3497 6649 4.887655 AGGTTTTAGCAACTTAGCACAAGT 59.112 37.500 0.00 0.00 36.85 3.16
3498 6650 5.008712 AGGTTTTAGCAACTTAGCACAAGTC 59.991 40.000 4.41 0.00 36.85 3.01
3499 6651 5.220970 GGTTTTAGCAACTTAGCACAAGTCA 60.221 40.000 4.41 0.00 36.85 3.41
3500 6652 6.262601 GTTTTAGCAACTTAGCACAAGTCAA 58.737 36.000 4.41 0.00 36.85 3.18
3501 6653 5.673337 TTAGCAACTTAGCACAAGTCAAG 57.327 39.130 4.41 0.76 36.85 3.02
3502 6654 2.291741 AGCAACTTAGCACAAGTCAAGC 59.708 45.455 4.41 8.82 36.85 4.01
3503 6655 2.033299 GCAACTTAGCACAAGTCAAGCA 59.967 45.455 4.41 0.00 0.00 3.91
3504 6656 3.489059 GCAACTTAGCACAAGTCAAGCAA 60.489 43.478 4.41 0.00 0.00 3.91
3505 6657 4.794003 GCAACTTAGCACAAGTCAAGCAAT 60.794 41.667 4.41 0.00 0.00 3.56
3506 6658 4.756084 ACTTAGCACAAGTCAAGCAATC 57.244 40.909 0.00 0.00 0.00 2.67
3507 6659 4.136796 ACTTAGCACAAGTCAAGCAATCA 58.863 39.130 0.00 0.00 0.00 2.57
3508 6660 4.580167 ACTTAGCACAAGTCAAGCAATCAA 59.420 37.500 0.00 0.00 0.00 2.57
3509 6661 3.360249 AGCACAAGTCAAGCAATCAAC 57.640 42.857 0.00 0.00 0.00 3.18
3510 6662 2.035066 AGCACAAGTCAAGCAATCAACC 59.965 45.455 0.00 0.00 0.00 3.77
3511 6663 2.035066 GCACAAGTCAAGCAATCAACCT 59.965 45.455 0.00 0.00 0.00 3.50
3512 6664 3.253188 GCACAAGTCAAGCAATCAACCTA 59.747 43.478 0.00 0.00 0.00 3.08
3513 6665 4.787598 CACAAGTCAAGCAATCAACCTAC 58.212 43.478 0.00 0.00 0.00 3.18
3514 6666 4.275689 CACAAGTCAAGCAATCAACCTACA 59.724 41.667 0.00 0.00 0.00 2.74
3515 6667 4.275936 ACAAGTCAAGCAATCAACCTACAC 59.724 41.667 0.00 0.00 0.00 2.90
3516 6668 4.085357 AGTCAAGCAATCAACCTACACA 57.915 40.909 0.00 0.00 0.00 3.72
3517 6669 4.655963 AGTCAAGCAATCAACCTACACAT 58.344 39.130 0.00 0.00 0.00 3.21
3518 6670 4.456911 AGTCAAGCAATCAACCTACACATG 59.543 41.667 0.00 0.00 0.00 3.21
3519 6671 3.191162 TCAAGCAATCAACCTACACATGC 59.809 43.478 0.00 0.00 0.00 4.06
3520 6672 2.794103 AGCAATCAACCTACACATGCA 58.206 42.857 0.00 0.00 34.89 3.96
3521 6673 3.156293 AGCAATCAACCTACACATGCAA 58.844 40.909 0.00 0.00 34.89 4.08
3522 6674 3.765511 AGCAATCAACCTACACATGCAAT 59.234 39.130 0.00 0.00 34.89 3.56
3523 6675 4.221262 AGCAATCAACCTACACATGCAATT 59.779 37.500 0.00 0.00 34.89 2.32
3524 6676 4.563976 GCAATCAACCTACACATGCAATTC 59.436 41.667 0.00 0.00 32.80 2.17
3525 6677 5.622914 GCAATCAACCTACACATGCAATTCT 60.623 40.000 0.00 0.00 32.80 2.40
3526 6678 6.404623 GCAATCAACCTACACATGCAATTCTA 60.405 38.462 0.00 0.00 32.80 2.10
3527 6679 6.932356 ATCAACCTACACATGCAATTCTAG 57.068 37.500 0.00 0.00 0.00 2.43
3528 6680 6.048732 TCAACCTACACATGCAATTCTAGA 57.951 37.500 0.00 0.00 0.00 2.43
3529 6681 6.108687 TCAACCTACACATGCAATTCTAGAG 58.891 40.000 0.00 0.00 0.00 2.43
3530 6682 5.683876 ACCTACACATGCAATTCTAGAGT 57.316 39.130 0.00 0.00 0.00 3.24
3531 6683 6.791867 ACCTACACATGCAATTCTAGAGTA 57.208 37.500 0.00 0.00 0.00 2.59
3532 6684 7.366847 ACCTACACATGCAATTCTAGAGTAT 57.633 36.000 0.00 0.00 0.00 2.12
3533 6685 8.478775 ACCTACACATGCAATTCTAGAGTATA 57.521 34.615 0.00 0.00 0.00 1.47
3534 6686 8.580720 ACCTACACATGCAATTCTAGAGTATAG 58.419 37.037 0.00 0.00 0.00 1.31
3535 6687 7.543868 CCTACACATGCAATTCTAGAGTATAGC 59.456 40.741 0.00 0.00 0.00 2.97
3536 6688 6.820335 ACACATGCAATTCTAGAGTATAGCA 58.180 36.000 10.76 10.76 35.03 3.49
3537 6689 6.927936 ACACATGCAATTCTAGAGTATAGCAG 59.072 38.462 12.90 9.02 33.94 4.24
3538 6690 5.931146 ACATGCAATTCTAGAGTATAGCAGC 59.069 40.000 12.90 0.00 33.94 5.25
3539 6691 4.550422 TGCAATTCTAGAGTATAGCAGCG 58.450 43.478 6.04 0.00 0.00 5.18
3540 6692 3.923461 GCAATTCTAGAGTATAGCAGCGG 59.077 47.826 0.00 0.00 0.00 5.52
3541 6693 4.321304 GCAATTCTAGAGTATAGCAGCGGA 60.321 45.833 0.00 0.00 0.00 5.54
3542 6694 5.773575 CAATTCTAGAGTATAGCAGCGGAA 58.226 41.667 0.00 0.00 0.00 4.30
3543 6695 6.216569 CAATTCTAGAGTATAGCAGCGGAAA 58.783 40.000 0.00 0.00 0.00 3.13
3544 6696 5.440234 TTCTAGAGTATAGCAGCGGAAAG 57.560 43.478 0.00 0.00 0.00 2.62
3545 6697 4.462133 TCTAGAGTATAGCAGCGGAAAGT 58.538 43.478 0.00 0.00 0.00 2.66
3546 6698 5.618236 TCTAGAGTATAGCAGCGGAAAGTA 58.382 41.667 0.00 0.00 0.00 2.24
3547 6699 6.060136 TCTAGAGTATAGCAGCGGAAAGTAA 58.940 40.000 0.00 0.00 0.00 2.24
3548 6700 4.934515 AGAGTATAGCAGCGGAAAGTAAC 58.065 43.478 0.00 0.00 0.00 2.50
3549 6701 4.401519 AGAGTATAGCAGCGGAAAGTAACA 59.598 41.667 0.00 0.00 0.00 2.41
3550 6702 4.430908 AGTATAGCAGCGGAAAGTAACAC 58.569 43.478 0.00 0.00 0.00 3.32
3551 6703 2.823924 TAGCAGCGGAAAGTAACACA 57.176 45.000 0.00 0.00 0.00 3.72
3552 6704 1.961793 AGCAGCGGAAAGTAACACAA 58.038 45.000 0.00 0.00 0.00 3.33
3553 6705 2.504367 AGCAGCGGAAAGTAACACAAT 58.496 42.857 0.00 0.00 0.00 2.71
3554 6706 2.884639 AGCAGCGGAAAGTAACACAATT 59.115 40.909 0.00 0.00 0.00 2.32
3555 6707 2.979813 GCAGCGGAAAGTAACACAATTG 59.020 45.455 3.24 3.24 0.00 2.32
3556 6708 2.979813 CAGCGGAAAGTAACACAATTGC 59.020 45.455 5.05 0.00 0.00 3.56
3557 6709 2.621055 AGCGGAAAGTAACACAATTGCA 59.379 40.909 5.05 0.00 0.00 4.08
3558 6710 3.255642 AGCGGAAAGTAACACAATTGCAT 59.744 39.130 5.05 0.00 0.00 3.96
3559 6711 4.457603 AGCGGAAAGTAACACAATTGCATA 59.542 37.500 5.05 0.00 0.00 3.14
3560 6712 5.125417 AGCGGAAAGTAACACAATTGCATAT 59.875 36.000 5.05 0.00 0.00 1.78
3561 6713 5.229887 GCGGAAAGTAACACAATTGCATATG 59.770 40.000 5.05 0.00 0.00 1.78
3562 6714 6.550843 CGGAAAGTAACACAATTGCATATGA 58.449 36.000 6.97 0.00 0.00 2.15
3563 6715 7.026562 CGGAAAGTAACACAATTGCATATGAA 58.973 34.615 6.97 0.00 0.00 2.57
3564 6716 7.218773 CGGAAAGTAACACAATTGCATATGAAG 59.781 37.037 6.97 1.82 0.00 3.02
3565 6717 7.489113 GGAAAGTAACACAATTGCATATGAAGG 59.511 37.037 6.97 0.00 0.00 3.46
3566 6718 7.466746 AAGTAACACAATTGCATATGAAGGT 57.533 32.000 6.97 0.00 0.00 3.50
3567 6719 8.574251 AAGTAACACAATTGCATATGAAGGTA 57.426 30.769 6.97 0.00 0.00 3.08
3568 6720 8.574251 AGTAACACAATTGCATATGAAGGTAA 57.426 30.769 6.97 0.00 0.00 2.85
3569 6721 9.019656 AGTAACACAATTGCATATGAAGGTAAA 57.980 29.630 6.97 0.00 0.00 2.01
3570 6722 9.289303 GTAACACAATTGCATATGAAGGTAAAG 57.711 33.333 6.97 0.00 0.00 1.85
3571 6723 6.866480 ACACAATTGCATATGAAGGTAAAGG 58.134 36.000 6.97 0.00 0.00 3.11
3572 6724 6.127366 ACACAATTGCATATGAAGGTAAAGGG 60.127 38.462 6.97 0.00 0.00 3.95
3573 6725 5.363580 ACAATTGCATATGAAGGTAAAGGGG 59.636 40.000 6.97 0.00 0.00 4.79
3574 6726 4.871871 TTGCATATGAAGGTAAAGGGGA 57.128 40.909 6.97 0.00 0.00 4.81
3575 6727 4.437682 TGCATATGAAGGTAAAGGGGAG 57.562 45.455 6.97 0.00 0.00 4.30
3576 6728 3.138283 TGCATATGAAGGTAAAGGGGAGG 59.862 47.826 6.97 0.00 0.00 4.30
3577 6729 3.394606 GCATATGAAGGTAAAGGGGAGGA 59.605 47.826 6.97 0.00 0.00 3.71
3578 6730 4.505742 GCATATGAAGGTAAAGGGGAGGAG 60.506 50.000 6.97 0.00 0.00 3.69
3579 6731 2.735259 TGAAGGTAAAGGGGAGGAGT 57.265 50.000 0.00 0.00 0.00 3.85
3580 6732 2.999928 TGAAGGTAAAGGGGAGGAGTT 58.000 47.619 0.00 0.00 0.00 3.01
3581 6733 3.332968 TGAAGGTAAAGGGGAGGAGTTT 58.667 45.455 0.00 0.00 0.00 2.66
3582 6734 3.073946 TGAAGGTAAAGGGGAGGAGTTTG 59.926 47.826 0.00 0.00 0.00 2.93
3583 6735 2.999928 AGGTAAAGGGGAGGAGTTTGA 58.000 47.619 0.00 0.00 0.00 2.69
3584 6736 2.913617 AGGTAAAGGGGAGGAGTTTGAG 59.086 50.000 0.00 0.00 0.00 3.02
3585 6737 2.026169 GGTAAAGGGGAGGAGTTTGAGG 60.026 54.545 0.00 0.00 0.00 3.86
3586 6738 2.133858 AAAGGGGAGGAGTTTGAGGA 57.866 50.000 0.00 0.00 0.00 3.71
3587 6739 1.662686 AAGGGGAGGAGTTTGAGGAG 58.337 55.000 0.00 0.00 0.00 3.69
3588 6740 0.252927 AGGGGAGGAGTTTGAGGAGG 60.253 60.000 0.00 0.00 0.00 4.30
3589 6741 1.604915 GGGAGGAGTTTGAGGAGGC 59.395 63.158 0.00 0.00 0.00 4.70
3590 6742 1.201429 GGGAGGAGTTTGAGGAGGCA 61.201 60.000 0.00 0.00 0.00 4.75
3591 6743 0.693049 GGAGGAGTTTGAGGAGGCAA 59.307 55.000 0.00 0.00 0.00 4.52
3592 6744 1.073923 GGAGGAGTTTGAGGAGGCAAA 59.926 52.381 0.00 0.00 35.54 3.68
3595 6747 4.944249 GTTTGAGGAGGCAAACGC 57.056 55.556 0.00 0.00 45.40 4.84
3596 6748 2.029743 GTTTGAGGAGGCAAACGCA 58.970 52.632 0.00 0.00 45.40 5.24
3597 6749 0.383949 GTTTGAGGAGGCAAACGCAA 59.616 50.000 0.00 0.00 45.40 4.85
3598 6750 1.000274 GTTTGAGGAGGCAAACGCAAT 60.000 47.619 0.00 0.00 45.40 3.56
3599 6751 1.327303 TTGAGGAGGCAAACGCAATT 58.673 45.000 0.00 0.00 0.00 2.32
3600 6752 1.327303 TGAGGAGGCAAACGCAATTT 58.673 45.000 0.00 0.00 0.00 1.82
3602 6754 0.318120 AGGAGGCAAACGCAATTTGG 59.682 50.000 11.31 0.00 46.73 3.28
3603 6755 0.316841 GGAGGCAAACGCAATTTGGA 59.683 50.000 11.31 0.00 46.73 3.53
3604 6756 1.669795 GGAGGCAAACGCAATTTGGAG 60.670 52.381 11.31 0.00 46.73 3.86
3605 6757 1.269448 GAGGCAAACGCAATTTGGAGA 59.731 47.619 11.31 0.00 46.73 3.71
3606 6758 1.000274 AGGCAAACGCAATTTGGAGAC 60.000 47.619 11.31 0.00 46.73 3.36
3607 6759 1.269517 GGCAAACGCAATTTGGAGACA 60.270 47.619 11.31 0.00 46.73 3.41
3608 6760 1.786579 GCAAACGCAATTTGGAGACAC 59.213 47.619 11.31 0.00 46.73 3.67
3609 6761 2.043411 CAAACGCAATTTGGAGACACG 58.957 47.619 0.00 0.00 43.52 4.49
3610 6762 0.591170 AACGCAATTTGGAGACACGG 59.409 50.000 0.00 0.00 42.67 4.94
3611 6763 0.250124 ACGCAATTTGGAGACACGGA 60.250 50.000 0.00 0.00 42.67 4.69
3612 6764 0.443869 CGCAATTTGGAGACACGGAG 59.556 55.000 0.00 0.00 42.67 4.63
3613 6765 1.808411 GCAATTTGGAGACACGGAGA 58.192 50.000 0.00 0.00 42.67 3.71
3614 6766 2.359900 GCAATTTGGAGACACGGAGAT 58.640 47.619 0.00 0.00 42.67 2.75
3615 6767 2.749621 GCAATTTGGAGACACGGAGATT 59.250 45.455 0.00 0.00 42.67 2.40
3616 6768 3.191371 GCAATTTGGAGACACGGAGATTT 59.809 43.478 0.00 0.00 42.67 2.17
3617 6769 4.321230 GCAATTTGGAGACACGGAGATTTT 60.321 41.667 0.00 0.00 42.67 1.82
3618 6770 5.772521 CAATTTGGAGACACGGAGATTTTT 58.227 37.500 0.00 0.00 42.67 1.94
3619 6771 4.829064 TTTGGAGACACGGAGATTTTTG 57.171 40.909 0.00 0.00 42.67 2.44
3620 6772 3.762407 TGGAGACACGGAGATTTTTGA 57.238 42.857 0.00 0.00 33.40 2.69
3621 6773 3.664107 TGGAGACACGGAGATTTTTGAG 58.336 45.455 0.00 0.00 33.40 3.02
3622 6774 2.416893 GGAGACACGGAGATTTTTGAGC 59.583 50.000 0.00 0.00 0.00 4.26
3623 6775 2.416893 GAGACACGGAGATTTTTGAGCC 59.583 50.000 0.00 0.00 0.00 4.70
3624 6776 1.128692 GACACGGAGATTTTTGAGCCG 59.871 52.381 0.00 0.00 46.83 5.52
3626 6778 3.975992 CGGAGATTTTTGAGCCGTG 57.024 52.632 0.00 0.00 37.35 4.94
3627 6779 0.447801 CGGAGATTTTTGAGCCGTGG 59.552 55.000 0.00 0.00 37.35 4.94
3628 6780 1.534729 GGAGATTTTTGAGCCGTGGT 58.465 50.000 0.00 0.00 0.00 4.16
3629 6781 1.886542 GGAGATTTTTGAGCCGTGGTT 59.113 47.619 0.00 0.00 0.00 3.67
3630 6782 2.095212 GGAGATTTTTGAGCCGTGGTTC 60.095 50.000 0.00 0.00 0.00 3.62
3631 6783 2.814336 GAGATTTTTGAGCCGTGGTTCT 59.186 45.455 4.35 0.00 0.00 3.01
3632 6784 2.554032 AGATTTTTGAGCCGTGGTTCTG 59.446 45.455 4.35 0.00 0.00 3.02
3633 6785 2.045561 TTTTTGAGCCGTGGTTCTGA 57.954 45.000 4.35 0.00 0.00 3.27
3634 6786 2.270352 TTTTGAGCCGTGGTTCTGAT 57.730 45.000 4.35 0.00 0.00 2.90
3635 6787 3.410631 TTTTGAGCCGTGGTTCTGATA 57.589 42.857 4.35 0.00 0.00 2.15
3636 6788 2.672961 TTGAGCCGTGGTTCTGATAG 57.327 50.000 4.35 0.00 0.00 2.08
3637 6789 0.824109 TGAGCCGTGGTTCTGATAGG 59.176 55.000 4.35 0.00 0.00 2.57
3638 6790 0.824759 GAGCCGTGGTTCTGATAGGT 59.175 55.000 0.00 0.00 0.00 3.08
3639 6791 0.537188 AGCCGTGGTTCTGATAGGTG 59.463 55.000 0.00 0.00 0.00 4.00
3640 6792 0.462047 GCCGTGGTTCTGATAGGTGG 60.462 60.000 0.00 0.00 0.00 4.61
3641 6793 0.902531 CCGTGGTTCTGATAGGTGGT 59.097 55.000 0.00 0.00 0.00 4.16
3642 6794 1.405526 CCGTGGTTCTGATAGGTGGTG 60.406 57.143 0.00 0.00 0.00 4.17
3643 6795 1.739067 GTGGTTCTGATAGGTGGTGC 58.261 55.000 0.00 0.00 0.00 5.01
3644 6796 1.279271 GTGGTTCTGATAGGTGGTGCT 59.721 52.381 0.00 0.00 0.00 4.40
3645 6797 2.500098 GTGGTTCTGATAGGTGGTGCTA 59.500 50.000 0.00 0.00 0.00 3.49
3646 6798 3.134804 GTGGTTCTGATAGGTGGTGCTAT 59.865 47.826 0.00 0.00 0.00 2.97
3647 6799 3.388024 TGGTTCTGATAGGTGGTGCTATC 59.612 47.826 0.00 0.00 34.21 2.08
3648 6800 3.553096 GGTTCTGATAGGTGGTGCTATCG 60.553 52.174 0.00 0.00 35.84 2.92
3649 6801 2.945456 TCTGATAGGTGGTGCTATCGT 58.055 47.619 0.00 0.00 35.84 3.73
3650 6802 4.094830 TCTGATAGGTGGTGCTATCGTA 57.905 45.455 0.00 0.00 35.84 3.43
3651 6803 3.819337 TCTGATAGGTGGTGCTATCGTAC 59.181 47.826 0.00 0.00 35.84 3.67
3652 6804 3.558033 TGATAGGTGGTGCTATCGTACA 58.442 45.455 0.00 0.00 35.84 2.90
3653 6805 4.149598 TGATAGGTGGTGCTATCGTACAT 58.850 43.478 0.00 0.00 35.84 2.29
3654 6806 4.217767 TGATAGGTGGTGCTATCGTACATC 59.782 45.833 0.00 0.00 35.84 3.06
3655 6807 1.687123 AGGTGGTGCTATCGTACATCC 59.313 52.381 0.00 0.00 0.00 3.51
3656 6808 1.411246 GGTGGTGCTATCGTACATCCA 59.589 52.381 0.00 0.00 0.00 3.41
3657 6809 2.470821 GTGGTGCTATCGTACATCCAC 58.529 52.381 0.00 0.00 37.33 4.02
3658 6810 1.066454 TGGTGCTATCGTACATCCACG 59.934 52.381 0.00 0.00 43.28 4.94
3659 6811 1.066605 GGTGCTATCGTACATCCACGT 59.933 52.381 0.00 0.00 42.51 4.49
3660 6812 2.480759 GGTGCTATCGTACATCCACGTT 60.481 50.000 0.00 0.00 42.51 3.99
3661 6813 2.534349 GTGCTATCGTACATCCACGTTG 59.466 50.000 0.00 0.00 42.51 4.10
3662 6814 2.424246 TGCTATCGTACATCCACGTTGA 59.576 45.455 0.00 0.00 42.51 3.18
3663 6815 3.067601 TGCTATCGTACATCCACGTTGAT 59.932 43.478 0.00 0.00 42.51 2.57
3664 6816 3.425525 GCTATCGTACATCCACGTTGATG 59.574 47.826 23.87 23.87 46.10 3.07
3665 6817 2.287393 TCGTACATCCACGTTGATGG 57.713 50.000 27.50 14.01 45.16 3.51
3672 6824 2.743636 TCCACGTTGATGGAGACTTC 57.256 50.000 0.00 0.00 44.14 3.01
3673 6825 1.967779 TCCACGTTGATGGAGACTTCA 59.032 47.619 0.00 0.00 44.14 3.02
3679 6831 2.859165 TGATGGAGACTTCAACCCAC 57.141 50.000 0.00 0.00 41.09 4.61
3680 6832 1.001974 TGATGGAGACTTCAACCCACG 59.998 52.381 0.00 0.00 41.09 4.94
3681 6833 1.275291 GATGGAGACTTCAACCCACGA 59.725 52.381 0.00 0.00 34.76 4.35
3682 6834 1.124780 TGGAGACTTCAACCCACGAA 58.875 50.000 0.00 0.00 0.00 3.85
3683 6835 1.070134 TGGAGACTTCAACCCACGAAG 59.930 52.381 0.00 0.00 44.46 3.79
3684 6836 1.608283 GGAGACTTCAACCCACGAAGG 60.608 57.143 5.04 0.00 43.43 3.46
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 5.693769 AGGTATCTTGCAGTAGGCTTTTA 57.306 39.130 0.00 0.00 45.15 1.52
1 2 4.576330 AGGTATCTTGCAGTAGGCTTTT 57.424 40.909 0.00 0.00 45.15 2.27
2 3 4.576330 AAGGTATCTTGCAGTAGGCTTT 57.424 40.909 0.00 0.00 45.15 3.51
3 4 4.469945 TGTAAGGTATCTTGCAGTAGGCTT 59.530 41.667 1.95 0.00 45.15 4.35
4 5 4.030913 TGTAAGGTATCTTGCAGTAGGCT 58.969 43.478 1.95 0.00 45.15 4.58
5 6 4.402056 TGTAAGGTATCTTGCAGTAGGC 57.598 45.455 1.95 0.00 39.95 3.93
6 7 6.407202 ACTTTGTAAGGTATCTTGCAGTAGG 58.593 40.000 16.64 5.11 44.22 3.18
7 8 6.253727 CGACTTTGTAAGGTATCTTGCAGTAG 59.746 42.308 6.62 10.48 44.22 2.57
8 9 6.071784 TCGACTTTGTAAGGTATCTTGCAGTA 60.072 38.462 6.62 0.00 44.22 2.74
9 10 4.929808 CGACTTTGTAAGGTATCTTGCAGT 59.070 41.667 6.62 2.80 44.22 4.40
10 11 5.168569 TCGACTTTGTAAGGTATCTTGCAG 58.831 41.667 6.62 0.00 44.22 4.41
53 58 4.694339 ACGAGTACCCTTCATCTATTTGC 58.306 43.478 0.00 0.00 0.00 3.68
66 71 3.320626 GGTAGTCAAACAACGAGTACCC 58.679 50.000 11.53 0.00 46.93 3.69
106 111 3.878237 ACCCACTCTCCTGATCGTATA 57.122 47.619 0.00 0.00 0.00 1.47
110 115 2.294791 GACATACCCACTCTCCTGATCG 59.705 54.545 0.00 0.00 0.00 3.69
164 169 1.607148 GGTAGTCAAAACCAGTGTGCC 59.393 52.381 0.00 0.00 36.96 5.01
165 170 2.572290 AGGTAGTCAAAACCAGTGTGC 58.428 47.619 0.00 0.00 39.64 4.57
194 199 1.512926 CTCGTAGTTTGCTGGTTGCT 58.487 50.000 0.00 0.00 43.37 3.91
297 302 2.326222 TTTTTGAGCACGCGTGGAT 58.674 47.368 37.47 19.39 0.00 3.41
313 318 1.474077 GGCTGAGATTGCGTCCATTTT 59.526 47.619 0.00 0.00 0.00 1.82
321 326 1.709147 CCTTTCCGGCTGAGATTGCG 61.709 60.000 0.00 0.00 0.00 4.85
847 853 1.452145 GCCAGCCACGGAGAAAAACA 61.452 55.000 0.00 0.00 0.00 2.83
979 1023 3.067833 GGAAAGTTGCTAAGCTTCTCGT 58.932 45.455 0.00 0.00 0.00 4.18
980 1024 3.067106 TGGAAAGTTGCTAAGCTTCTCG 58.933 45.455 0.00 0.00 0.00 4.04
1078 1128 1.569493 CACTTTTGTCCGGTCGCTG 59.431 57.895 0.00 0.00 0.00 5.18
1106 1156 4.409218 GACACCCGCGAGCACGTA 62.409 66.667 8.23 0.00 41.98 3.57
1156 1206 1.956477 GTCTTGCAAACACACCAGGAT 59.044 47.619 0.00 0.00 0.00 3.24
1160 1210 0.449786 CACGTCTTGCAAACACACCA 59.550 50.000 0.00 0.00 0.00 4.17
1165 1215 2.712539 CGCCACGTCTTGCAAACA 59.287 55.556 0.00 0.00 0.00 2.83
1185 1235 1.138883 CGGTGGTCGTCGATGATGT 59.861 57.895 11.16 0.00 0.00 3.06
1214 1264 1.825474 TGAGTTCGGGAGGAAGATGTC 59.175 52.381 0.00 0.00 34.69 3.06
1309 1359 3.419759 CTTTCGCCGACCCCAACG 61.420 66.667 0.00 0.00 0.00 4.10
1345 1395 1.344438 AGAAGACCGTTGCAGTGATCA 59.656 47.619 0.00 0.00 0.00 2.92
1424 1474 3.721370 ATAGGCTTTGGGGCGGCTG 62.721 63.158 9.56 0.00 45.89 4.85
1425 1475 3.420482 ATAGGCTTTGGGGCGGCT 61.420 61.111 9.56 0.00 45.89 5.52
1426 1476 3.219198 CATAGGCTTTGGGGCGGC 61.219 66.667 0.00 0.00 45.89 6.53
1445 1501 1.153745 CCTCGAAGAAGCACTCCGG 60.154 63.158 0.00 0.00 34.09 5.14
1500 1556 6.321435 ACGAGGTATCAAGAACACATGATAGA 59.679 38.462 0.00 0.00 38.75 1.98
1584 1640 3.517602 CATTCCGATTCTAACACCACGA 58.482 45.455 0.00 0.00 0.00 4.35
1625 1681 1.069022 CAACGACGAGAAGACCCGTAA 60.069 52.381 0.00 0.00 39.30 3.18
1627 1683 1.168407 TCAACGACGAGAAGACCCGT 61.168 55.000 0.00 0.00 42.17 5.28
1720 1776 4.055360 CGTGACGCTTATCCCATGAATAA 58.945 43.478 0.00 0.00 0.00 1.40
1793 1849 9.819267 ATGATGCTTAAGAAGTAGTTACCTTAC 57.181 33.333 6.67 0.00 0.00 2.34
1854 1911 5.047164 ACATGCTGGCAAATCAAATAAGTGA 60.047 36.000 0.00 0.00 0.00 3.41
1961 2018 5.429130 AGATAACAATTCGGGAAACTCTCC 58.571 41.667 0.00 0.00 44.54 3.71
2117 2177 3.535561 ACCATTCTTTAGACATGGCGAG 58.464 45.455 15.09 0.00 36.78 5.03
2132 2192 6.179906 TCTTCTAGAATCCATGGACCATTC 57.820 41.667 18.99 17.08 0.00 2.67
2185 2245 5.070770 TGTGTTGGTTTCATCATAATGCC 57.929 39.130 0.00 0.00 32.58 4.40
2192 2252 6.430925 CCTCTTCTATTGTGTTGGTTTCATCA 59.569 38.462 0.00 0.00 0.00 3.07
2205 2265 8.743714 GTTCCATTCAAAATCCTCTTCTATTGT 58.256 33.333 0.00 0.00 0.00 2.71
2254 2314 6.688922 GCCACCCTTGTTGATCATATCTTCTA 60.689 42.308 0.00 0.00 0.00 2.10
2263 2323 2.575735 TCATAGCCACCCTTGTTGATCA 59.424 45.455 0.00 0.00 0.00 2.92
2329 2389 5.775686 TCAAATTTCTGCTCAAATGTCTGG 58.224 37.500 0.00 0.00 0.00 3.86
2334 2394 5.408356 CCTCCTCAAATTTCTGCTCAAATG 58.592 41.667 0.00 0.00 0.00 2.32
2336 2396 3.828451 CCCTCCTCAAATTTCTGCTCAAA 59.172 43.478 0.00 0.00 0.00 2.69
2411 2471 8.094548 CCAGTAATATCATCGTAATCCTTTGGA 58.905 37.037 0.00 0.00 35.55 3.53
2582 2642 2.888834 ACAAAATTTCCGCAGCAACT 57.111 40.000 0.00 0.00 0.00 3.16
2607 2667 4.570772 TGCGACTATGAATTAAAGTCTGCC 59.429 41.667 17.72 7.98 38.16 4.85
2611 2680 7.478667 CACTGTTTGCGACTATGAATTAAAGTC 59.521 37.037 0.00 4.86 36.99 3.01
2614 2683 7.197071 ACACTGTTTGCGACTATGAATTAAA 57.803 32.000 0.00 0.00 0.00 1.52
2773 2847 2.805194 ACTTTACCACTAGAGCGACCT 58.195 47.619 0.00 0.00 0.00 3.85
2842 2916 7.520614 GCATGCAACTTCTTACAAACTAGACTT 60.521 37.037 14.21 0.00 0.00 3.01
2861 2935 4.195225 ACATCATCAACAATGCATGCAA 57.805 36.364 26.68 7.30 35.17 4.08
2869 2943 6.830324 ACCTAACATGCTACATCATCAACAAT 59.170 34.615 0.00 0.00 0.00 2.71
2967 3041 3.875727 CTGCTGTTATGAAGTCATCCCAG 59.124 47.826 12.47 12.47 37.76 4.45
3015 6152 2.036256 GGCCACCCTCAAGCATGT 59.964 61.111 0.00 0.00 0.00 3.21
3064 6204 3.469863 AAAACCGGCGAGGCAGACA 62.470 57.895 9.30 0.00 46.52 3.41
3110 6257 1.610038 CCAGTTGCATGCAGAGTTGAA 59.390 47.619 21.50 0.37 0.00 2.69
3148 6295 0.393077 ACTGCCACTGTAGCTTCGTT 59.607 50.000 0.00 0.00 0.00 3.85
3249 6397 3.588210 TCATCATTCCTGCCACATCAT 57.412 42.857 0.00 0.00 0.00 2.45
3364 6516 4.505039 CGGATAGAAGGACAAAATAGGGGG 60.505 50.000 0.00 0.00 0.00 5.40
3386 6538 6.128499 CCTCTAGACATACTTTCGATCCTACG 60.128 46.154 0.00 0.00 0.00 3.51
3387 6539 6.149807 CCCTCTAGACATACTTTCGATCCTAC 59.850 46.154 0.00 0.00 0.00 3.18
3388 6540 6.239396 CCCTCTAGACATACTTTCGATCCTA 58.761 44.000 0.00 0.00 0.00 2.94
3389 6541 5.074115 CCCTCTAGACATACTTTCGATCCT 58.926 45.833 0.00 0.00 0.00 3.24
3390 6542 4.218852 CCCCTCTAGACATACTTTCGATCC 59.781 50.000 0.00 0.00 0.00 3.36
3391 6543 4.218852 CCCCCTCTAGACATACTTTCGATC 59.781 50.000 0.00 0.00 0.00 3.69
3392 6544 4.153411 CCCCCTCTAGACATACTTTCGAT 58.847 47.826 0.00 0.00 0.00 3.59
3393 6545 3.563223 CCCCCTCTAGACATACTTTCGA 58.437 50.000 0.00 0.00 0.00 3.71
3394 6546 2.036089 GCCCCCTCTAGACATACTTTCG 59.964 54.545 0.00 0.00 0.00 3.46
3395 6547 2.036089 CGCCCCCTCTAGACATACTTTC 59.964 54.545 0.00 0.00 0.00 2.62
3396 6548 2.040178 CGCCCCCTCTAGACATACTTT 58.960 52.381 0.00 0.00 0.00 2.66
3397 6549 1.063114 ACGCCCCCTCTAGACATACTT 60.063 52.381 0.00 0.00 0.00 2.24
3398 6550 0.556747 ACGCCCCCTCTAGACATACT 59.443 55.000 0.00 0.00 0.00 2.12
3399 6551 0.674534 CACGCCCCCTCTAGACATAC 59.325 60.000 0.00 0.00 0.00 2.39
3400 6552 0.554305 TCACGCCCCCTCTAGACATA 59.446 55.000 0.00 0.00 0.00 2.29
3401 6553 0.105453 ATCACGCCCCCTCTAGACAT 60.105 55.000 0.00 0.00 0.00 3.06
3402 6554 0.325296 AATCACGCCCCCTCTAGACA 60.325 55.000 0.00 0.00 0.00 3.41
3403 6555 1.614413 CTAATCACGCCCCCTCTAGAC 59.386 57.143 0.00 0.00 0.00 2.59
3404 6556 1.497716 TCTAATCACGCCCCCTCTAGA 59.502 52.381 0.00 0.00 0.00 2.43
3405 6557 1.614413 GTCTAATCACGCCCCCTCTAG 59.386 57.143 0.00 0.00 0.00 2.43
3406 6558 1.217183 AGTCTAATCACGCCCCCTCTA 59.783 52.381 0.00 0.00 0.00 2.43
3407 6559 0.032017 AGTCTAATCACGCCCCCTCT 60.032 55.000 0.00 0.00 0.00 3.69
3408 6560 1.340568 GTAGTCTAATCACGCCCCCTC 59.659 57.143 0.00 0.00 0.00 4.30
3409 6561 1.063114 AGTAGTCTAATCACGCCCCCT 60.063 52.381 0.00 0.00 0.00 4.79
3410 6562 1.411041 AGTAGTCTAATCACGCCCCC 58.589 55.000 0.00 0.00 0.00 5.40
3411 6563 2.429610 TCAAGTAGTCTAATCACGCCCC 59.570 50.000 0.00 0.00 0.00 5.80
3412 6564 3.119245 TGTCAAGTAGTCTAATCACGCCC 60.119 47.826 0.00 0.00 0.00 6.13
3413 6565 4.106029 TGTCAAGTAGTCTAATCACGCC 57.894 45.455 0.00 0.00 0.00 5.68
3414 6566 6.462073 TTTTGTCAAGTAGTCTAATCACGC 57.538 37.500 0.00 0.00 0.00 5.34
3423 6575 9.331106 GCTAAGCTTTTATTTTGTCAAGTAGTC 57.669 33.333 3.20 0.00 0.00 2.59
3424 6576 8.297426 GGCTAAGCTTTTATTTTGTCAAGTAGT 58.703 33.333 3.20 0.00 0.00 2.73
3425 6577 8.515414 AGGCTAAGCTTTTATTTTGTCAAGTAG 58.485 33.333 3.20 0.00 0.00 2.57
3426 6578 8.404107 AGGCTAAGCTTTTATTTTGTCAAGTA 57.596 30.769 3.20 0.00 0.00 2.24
3427 6579 7.290110 AGGCTAAGCTTTTATTTTGTCAAGT 57.710 32.000 3.20 0.00 0.00 3.16
3428 6580 8.593492 AAAGGCTAAGCTTTTATTTTGTCAAG 57.407 30.769 3.20 0.00 36.13 3.02
3429 6581 8.956533 AAAAGGCTAAGCTTTTATTTTGTCAA 57.043 26.923 3.20 0.00 36.86 3.18
3430 6582 7.655732 GGAAAAGGCTAAGCTTTTATTTTGTCA 59.344 33.333 3.20 0.00 36.86 3.58
3431 6583 7.117812 GGGAAAAGGCTAAGCTTTTATTTTGTC 59.882 37.037 3.20 0.00 36.86 3.18
3432 6584 6.934645 GGGAAAAGGCTAAGCTTTTATTTTGT 59.065 34.615 3.20 0.00 36.86 2.83
3433 6585 6.934083 TGGGAAAAGGCTAAGCTTTTATTTTG 59.066 34.615 3.20 0.00 36.86 2.44
3434 6586 7.073457 TGGGAAAAGGCTAAGCTTTTATTTT 57.927 32.000 3.20 7.60 36.86 1.82
3435 6587 6.680148 TGGGAAAAGGCTAAGCTTTTATTT 57.320 33.333 3.20 0.00 36.86 1.40
3436 6588 6.680148 TTGGGAAAAGGCTAAGCTTTTATT 57.320 33.333 3.20 0.00 36.86 1.40
3437 6589 6.874278 ATTGGGAAAAGGCTAAGCTTTTAT 57.126 33.333 3.20 0.00 36.86 1.40
3438 6590 6.680148 AATTGGGAAAAGGCTAAGCTTTTA 57.320 33.333 3.20 0.00 36.86 1.52
3439 6591 5.567037 AATTGGGAAAAGGCTAAGCTTTT 57.433 34.783 3.20 0.00 39.44 2.27
3440 6592 5.567037 AAATTGGGAAAAGGCTAAGCTTT 57.433 34.783 3.20 0.00 0.00 3.51
3441 6593 5.567037 AAAATTGGGAAAAGGCTAAGCTT 57.433 34.783 3.48 3.48 0.00 3.74
3442 6594 6.680148 TTAAAATTGGGAAAAGGCTAAGCT 57.320 33.333 0.00 0.00 0.00 3.74
3443 6595 7.824289 AGAATTAAAATTGGGAAAAGGCTAAGC 59.176 33.333 0.00 0.00 0.00 3.09
3444 6596 9.371136 GAGAATTAAAATTGGGAAAAGGCTAAG 57.629 33.333 0.00 0.00 0.00 2.18
3445 6597 8.032451 CGAGAATTAAAATTGGGAAAAGGCTAA 58.968 33.333 0.00 0.00 0.00 3.09
3446 6598 7.363443 CCGAGAATTAAAATTGGGAAAAGGCTA 60.363 37.037 0.00 0.00 0.00 3.93
3447 6599 6.398095 CGAGAATTAAAATTGGGAAAAGGCT 58.602 36.000 0.00 0.00 0.00 4.58
3448 6600 5.580691 CCGAGAATTAAAATTGGGAAAAGGC 59.419 40.000 0.00 0.00 0.00 4.35
3449 6601 5.580691 GCCGAGAATTAAAATTGGGAAAAGG 59.419 40.000 0.00 0.00 0.00 3.11
3450 6602 6.162777 TGCCGAGAATTAAAATTGGGAAAAG 58.837 36.000 0.00 0.00 0.00 2.27
3451 6603 6.102897 TGCCGAGAATTAAAATTGGGAAAA 57.897 33.333 0.00 0.00 0.00 2.29
3452 6604 5.337169 CCTGCCGAGAATTAAAATTGGGAAA 60.337 40.000 0.00 0.00 0.00 3.13
3453 6605 4.159506 CCTGCCGAGAATTAAAATTGGGAA 59.840 41.667 0.00 0.00 0.00 3.97
3454 6606 3.699038 CCTGCCGAGAATTAAAATTGGGA 59.301 43.478 0.00 0.00 0.00 4.37
3455 6607 3.447229 ACCTGCCGAGAATTAAAATTGGG 59.553 43.478 0.00 0.00 0.00 4.12
3456 6608 4.718940 ACCTGCCGAGAATTAAAATTGG 57.281 40.909 0.00 0.00 0.00 3.16
3457 6609 7.201435 GCTAAAACCTGCCGAGAATTAAAATTG 60.201 37.037 0.00 0.00 0.00 2.32
3458 6610 6.811665 GCTAAAACCTGCCGAGAATTAAAATT 59.188 34.615 0.00 0.00 0.00 1.82
3459 6611 6.071616 TGCTAAAACCTGCCGAGAATTAAAAT 60.072 34.615 0.00 0.00 0.00 1.82
3460 6612 5.241949 TGCTAAAACCTGCCGAGAATTAAAA 59.758 36.000 0.00 0.00 0.00 1.52
3461 6613 4.762765 TGCTAAAACCTGCCGAGAATTAAA 59.237 37.500 0.00 0.00 0.00 1.52
3462 6614 4.328536 TGCTAAAACCTGCCGAGAATTAA 58.671 39.130 0.00 0.00 0.00 1.40
3463 6615 3.945346 TGCTAAAACCTGCCGAGAATTA 58.055 40.909 0.00 0.00 0.00 1.40
3464 6616 2.790433 TGCTAAAACCTGCCGAGAATT 58.210 42.857 0.00 0.00 0.00 2.17
3465 6617 2.488153 GTTGCTAAAACCTGCCGAGAAT 59.512 45.455 0.00 0.00 0.00 2.40
3466 6618 1.877443 GTTGCTAAAACCTGCCGAGAA 59.123 47.619 0.00 0.00 0.00 2.87
3467 6619 1.071699 AGTTGCTAAAACCTGCCGAGA 59.928 47.619 0.00 0.00 0.00 4.04
3468 6620 1.523758 AGTTGCTAAAACCTGCCGAG 58.476 50.000 0.00 0.00 0.00 4.63
3469 6621 1.975660 AAGTTGCTAAAACCTGCCGA 58.024 45.000 0.00 0.00 0.00 5.54
3470 6622 2.414161 GCTAAGTTGCTAAAACCTGCCG 60.414 50.000 0.00 0.00 0.00 5.69
3471 6623 2.556622 TGCTAAGTTGCTAAAACCTGCC 59.443 45.455 0.00 0.00 0.00 4.85
3472 6624 3.004315 TGTGCTAAGTTGCTAAAACCTGC 59.996 43.478 0.00 0.00 0.00 4.85
3473 6625 4.829064 TGTGCTAAGTTGCTAAAACCTG 57.171 40.909 0.00 0.00 0.00 4.00
3474 6626 4.887655 ACTTGTGCTAAGTTGCTAAAACCT 59.112 37.500 1.75 0.00 0.00 3.50
3475 6627 5.183014 ACTTGTGCTAAGTTGCTAAAACC 57.817 39.130 1.75 0.00 0.00 3.27
3476 6628 5.816919 TGACTTGTGCTAAGTTGCTAAAAC 58.183 37.500 8.07 0.00 0.00 2.43
3477 6629 6.443934 TTGACTTGTGCTAAGTTGCTAAAA 57.556 33.333 8.07 0.00 0.00 1.52
3478 6630 5.505654 GCTTGACTTGTGCTAAGTTGCTAAA 60.506 40.000 8.07 0.63 0.00 1.85
3479 6631 4.024048 GCTTGACTTGTGCTAAGTTGCTAA 60.024 41.667 8.07 3.01 0.00 3.09
3480 6632 3.498397 GCTTGACTTGTGCTAAGTTGCTA 59.502 43.478 8.07 0.00 0.00 3.49
3481 6633 2.291741 GCTTGACTTGTGCTAAGTTGCT 59.708 45.455 8.07 0.00 0.00 3.91
3482 6634 2.033299 TGCTTGACTTGTGCTAAGTTGC 59.967 45.455 8.07 11.88 0.00 4.17
3483 6635 3.969117 TGCTTGACTTGTGCTAAGTTG 57.031 42.857 8.07 4.46 0.00 3.16
3484 6636 4.580167 TGATTGCTTGACTTGTGCTAAGTT 59.420 37.500 8.07 0.00 0.00 2.66
3485 6637 4.136796 TGATTGCTTGACTTGTGCTAAGT 58.863 39.130 6.63 6.63 0.00 2.24
3486 6638 4.754372 TGATTGCTTGACTTGTGCTAAG 57.246 40.909 0.58 0.58 0.00 2.18
3487 6639 4.261572 GGTTGATTGCTTGACTTGTGCTAA 60.262 41.667 0.00 0.00 0.00 3.09
3488 6640 3.253188 GGTTGATTGCTTGACTTGTGCTA 59.747 43.478 0.00 0.00 0.00 3.49
3489 6641 2.035066 GGTTGATTGCTTGACTTGTGCT 59.965 45.455 0.00 0.00 0.00 4.40
3490 6642 2.035066 AGGTTGATTGCTTGACTTGTGC 59.965 45.455 0.00 0.00 0.00 4.57
3491 6643 3.996150 AGGTTGATTGCTTGACTTGTG 57.004 42.857 0.00 0.00 0.00 3.33
3492 6644 4.275936 GTGTAGGTTGATTGCTTGACTTGT 59.724 41.667 0.00 0.00 0.00 3.16
3493 6645 4.275689 TGTGTAGGTTGATTGCTTGACTTG 59.724 41.667 0.00 0.00 0.00 3.16
3494 6646 4.460263 TGTGTAGGTTGATTGCTTGACTT 58.540 39.130 0.00 0.00 0.00 3.01
3495 6647 4.085357 TGTGTAGGTTGATTGCTTGACT 57.915 40.909 0.00 0.00 0.00 3.41
3496 6648 4.726416 CATGTGTAGGTTGATTGCTTGAC 58.274 43.478 0.00 0.00 0.00 3.18
3497 6649 3.191162 GCATGTGTAGGTTGATTGCTTGA 59.809 43.478 0.00 0.00 0.00 3.02
3498 6650 3.057386 TGCATGTGTAGGTTGATTGCTTG 60.057 43.478 0.00 0.00 0.00 4.01
3499 6651 3.156293 TGCATGTGTAGGTTGATTGCTT 58.844 40.909 0.00 0.00 0.00 3.91
3500 6652 2.794103 TGCATGTGTAGGTTGATTGCT 58.206 42.857 0.00 0.00 0.00 3.91
3501 6653 3.574284 TTGCATGTGTAGGTTGATTGC 57.426 42.857 0.00 0.00 0.00 3.56
3502 6654 5.957798 AGAATTGCATGTGTAGGTTGATTG 58.042 37.500 0.00 0.00 0.00 2.67
3503 6655 7.112122 TCTAGAATTGCATGTGTAGGTTGATT 58.888 34.615 0.00 0.00 0.00 2.57
3504 6656 6.653020 TCTAGAATTGCATGTGTAGGTTGAT 58.347 36.000 0.00 0.00 0.00 2.57
3505 6657 6.048732 TCTAGAATTGCATGTGTAGGTTGA 57.951 37.500 0.00 0.00 0.00 3.18
3506 6658 5.877012 ACTCTAGAATTGCATGTGTAGGTTG 59.123 40.000 0.00 0.00 0.00 3.77
3507 6659 6.054860 ACTCTAGAATTGCATGTGTAGGTT 57.945 37.500 0.00 0.00 0.00 3.50
3508 6660 5.683876 ACTCTAGAATTGCATGTGTAGGT 57.316 39.130 0.00 0.00 0.00 3.08
3509 6661 7.543868 GCTATACTCTAGAATTGCATGTGTAGG 59.456 40.741 6.12 0.00 0.00 3.18
3510 6662 8.084684 TGCTATACTCTAGAATTGCATGTGTAG 58.915 37.037 8.79 7.21 30.65 2.74
3511 6663 7.951591 TGCTATACTCTAGAATTGCATGTGTA 58.048 34.615 8.79 0.00 30.65 2.90
3512 6664 6.820335 TGCTATACTCTAGAATTGCATGTGT 58.180 36.000 8.79 0.00 30.65 3.72
3513 6665 6.128607 GCTGCTATACTCTAGAATTGCATGTG 60.129 42.308 12.07 4.86 34.26 3.21
3514 6666 5.931146 GCTGCTATACTCTAGAATTGCATGT 59.069 40.000 12.07 0.05 34.26 3.21
3515 6667 5.061933 CGCTGCTATACTCTAGAATTGCATG 59.938 44.000 12.07 8.76 34.26 4.06
3516 6668 5.167121 CGCTGCTATACTCTAGAATTGCAT 58.833 41.667 12.07 0.00 34.26 3.96
3517 6669 4.550422 CGCTGCTATACTCTAGAATTGCA 58.450 43.478 11.41 11.41 33.77 4.08
3518 6670 3.923461 CCGCTGCTATACTCTAGAATTGC 59.077 47.826 0.00 0.00 0.00 3.56
3519 6671 5.378292 TCCGCTGCTATACTCTAGAATTG 57.622 43.478 0.00 0.00 0.00 2.32
3520 6672 6.041069 ACTTTCCGCTGCTATACTCTAGAATT 59.959 38.462 0.00 0.00 0.00 2.17
3521 6673 5.536916 ACTTTCCGCTGCTATACTCTAGAAT 59.463 40.000 0.00 0.00 0.00 2.40
3522 6674 4.888239 ACTTTCCGCTGCTATACTCTAGAA 59.112 41.667 0.00 0.00 0.00 2.10
3523 6675 4.462133 ACTTTCCGCTGCTATACTCTAGA 58.538 43.478 0.00 0.00 0.00 2.43
3524 6676 4.839668 ACTTTCCGCTGCTATACTCTAG 57.160 45.455 0.00 0.00 0.00 2.43
3525 6677 5.591472 TGTTACTTTCCGCTGCTATACTCTA 59.409 40.000 0.00 0.00 0.00 2.43
3526 6678 4.401519 TGTTACTTTCCGCTGCTATACTCT 59.598 41.667 0.00 0.00 0.00 3.24
3527 6679 4.503370 GTGTTACTTTCCGCTGCTATACTC 59.497 45.833 0.00 0.00 0.00 2.59
3528 6680 4.081862 TGTGTTACTTTCCGCTGCTATACT 60.082 41.667 0.00 0.00 0.00 2.12
3529 6681 4.178540 TGTGTTACTTTCCGCTGCTATAC 58.821 43.478 0.00 0.00 0.00 1.47
3530 6682 4.459390 TGTGTTACTTTCCGCTGCTATA 57.541 40.909 0.00 0.00 0.00 1.31
3531 6683 3.328382 TGTGTTACTTTCCGCTGCTAT 57.672 42.857 0.00 0.00 0.00 2.97
3532 6684 2.823924 TGTGTTACTTTCCGCTGCTA 57.176 45.000 0.00 0.00 0.00 3.49
3533 6685 1.961793 TTGTGTTACTTTCCGCTGCT 58.038 45.000 0.00 0.00 0.00 4.24
3534 6686 2.979813 CAATTGTGTTACTTTCCGCTGC 59.020 45.455 0.00 0.00 0.00 5.25
3535 6687 2.979813 GCAATTGTGTTACTTTCCGCTG 59.020 45.455 7.40 0.00 0.00 5.18
3536 6688 2.621055 TGCAATTGTGTTACTTTCCGCT 59.379 40.909 7.40 0.00 0.00 5.52
3537 6689 3.006659 TGCAATTGTGTTACTTTCCGC 57.993 42.857 7.40 0.00 0.00 5.54
3538 6690 6.550843 TCATATGCAATTGTGTTACTTTCCG 58.449 36.000 7.40 0.00 0.00 4.30
3539 6691 7.489113 CCTTCATATGCAATTGTGTTACTTTCC 59.511 37.037 7.40 0.00 0.00 3.13
3540 6692 8.028938 ACCTTCATATGCAATTGTGTTACTTTC 58.971 33.333 7.40 0.00 0.00 2.62
3541 6693 7.895759 ACCTTCATATGCAATTGTGTTACTTT 58.104 30.769 7.40 0.00 0.00 2.66
3542 6694 7.466746 ACCTTCATATGCAATTGTGTTACTT 57.533 32.000 7.40 0.00 0.00 2.24
3543 6695 8.574251 TTACCTTCATATGCAATTGTGTTACT 57.426 30.769 7.40 0.00 0.00 2.24
3544 6696 9.289303 CTTTACCTTCATATGCAATTGTGTTAC 57.711 33.333 7.40 0.00 0.00 2.50
3545 6697 8.465999 CCTTTACCTTCATATGCAATTGTGTTA 58.534 33.333 7.40 0.00 0.00 2.41
3546 6698 7.322664 CCTTTACCTTCATATGCAATTGTGTT 58.677 34.615 7.40 0.00 0.00 3.32
3547 6699 6.127366 CCCTTTACCTTCATATGCAATTGTGT 60.127 38.462 7.40 0.00 0.00 3.72
3548 6700 6.275335 CCCTTTACCTTCATATGCAATTGTG 58.725 40.000 7.40 0.00 0.00 3.33
3549 6701 5.363580 CCCCTTTACCTTCATATGCAATTGT 59.636 40.000 7.40 0.00 0.00 2.71
3550 6702 5.598005 TCCCCTTTACCTTCATATGCAATTG 59.402 40.000 0.00 0.00 0.00 2.32
3551 6703 5.776358 TCCCCTTTACCTTCATATGCAATT 58.224 37.500 0.00 0.00 0.00 2.32
3552 6704 5.388654 CTCCCCTTTACCTTCATATGCAAT 58.611 41.667 0.00 0.00 0.00 3.56
3553 6705 4.386312 CCTCCCCTTTACCTTCATATGCAA 60.386 45.833 0.00 0.00 0.00 4.08
3554 6706 3.138283 CCTCCCCTTTACCTTCATATGCA 59.862 47.826 0.00 0.00 0.00 3.96
3555 6707 3.394606 TCCTCCCCTTTACCTTCATATGC 59.605 47.826 0.00 0.00 0.00 3.14
3556 6708 4.660771 ACTCCTCCCCTTTACCTTCATATG 59.339 45.833 0.00 0.00 0.00 1.78
3557 6709 4.909284 ACTCCTCCCCTTTACCTTCATAT 58.091 43.478 0.00 0.00 0.00 1.78
3558 6710 4.363546 ACTCCTCCCCTTTACCTTCATA 57.636 45.455 0.00 0.00 0.00 2.15
3559 6711 3.222394 ACTCCTCCCCTTTACCTTCAT 57.778 47.619 0.00 0.00 0.00 2.57
3560 6712 2.735259 ACTCCTCCCCTTTACCTTCA 57.265 50.000 0.00 0.00 0.00 3.02
3561 6713 3.329814 TCAAACTCCTCCCCTTTACCTTC 59.670 47.826 0.00 0.00 0.00 3.46
3562 6714 3.330998 CTCAAACTCCTCCCCTTTACCTT 59.669 47.826 0.00 0.00 0.00 3.50
3563 6715 2.913617 CTCAAACTCCTCCCCTTTACCT 59.086 50.000 0.00 0.00 0.00 3.08
3564 6716 2.026169 CCTCAAACTCCTCCCCTTTACC 60.026 54.545 0.00 0.00 0.00 2.85
3565 6717 2.910977 TCCTCAAACTCCTCCCCTTTAC 59.089 50.000 0.00 0.00 0.00 2.01
3566 6718 3.182152 CTCCTCAAACTCCTCCCCTTTA 58.818 50.000 0.00 0.00 0.00 1.85
3567 6719 1.988846 CTCCTCAAACTCCTCCCCTTT 59.011 52.381 0.00 0.00 0.00 3.11
3568 6720 1.662686 CTCCTCAAACTCCTCCCCTT 58.337 55.000 0.00 0.00 0.00 3.95
3569 6721 0.252927 CCTCCTCAAACTCCTCCCCT 60.253 60.000 0.00 0.00 0.00 4.79
3570 6722 1.916206 GCCTCCTCAAACTCCTCCCC 61.916 65.000 0.00 0.00 0.00 4.81
3571 6723 1.201429 TGCCTCCTCAAACTCCTCCC 61.201 60.000 0.00 0.00 0.00 4.30
3572 6724 0.693049 TTGCCTCCTCAAACTCCTCC 59.307 55.000 0.00 0.00 0.00 4.30
3573 6725 2.568623 TTTGCCTCCTCAAACTCCTC 57.431 50.000 0.00 0.00 31.64 3.71
3579 6731 1.327303 ATTGCGTTTGCCTCCTCAAA 58.673 45.000 0.00 0.00 41.78 2.69
3580 6732 1.327303 AATTGCGTTTGCCTCCTCAA 58.673 45.000 0.00 0.00 41.78 3.02
3581 6733 1.000385 CAAATTGCGTTTGCCTCCTCA 60.000 47.619 2.03 0.00 40.62 3.86
3582 6734 1.669795 CCAAATTGCGTTTGCCTCCTC 60.670 52.381 8.44 0.00 44.69 3.71
3583 6735 0.318120 CCAAATTGCGTTTGCCTCCT 59.682 50.000 8.44 0.00 44.69 3.69
3584 6736 0.316841 TCCAAATTGCGTTTGCCTCC 59.683 50.000 8.44 0.00 44.69 4.30
3585 6737 1.269448 TCTCCAAATTGCGTTTGCCTC 59.731 47.619 8.44 0.00 44.69 4.70
3586 6738 1.000274 GTCTCCAAATTGCGTTTGCCT 60.000 47.619 8.44 0.00 44.69 4.75
3587 6739 1.269517 TGTCTCCAAATTGCGTTTGCC 60.270 47.619 8.44 0.00 44.69 4.52
3588 6740 1.786579 GTGTCTCCAAATTGCGTTTGC 59.213 47.619 8.44 0.00 44.69 3.68
3589 6741 2.043411 CGTGTCTCCAAATTGCGTTTG 58.957 47.619 7.26 7.26 45.44 2.93
3590 6742 1.001815 CCGTGTCTCCAAATTGCGTTT 60.002 47.619 0.00 0.00 0.00 3.60
3591 6743 0.591170 CCGTGTCTCCAAATTGCGTT 59.409 50.000 0.00 0.00 0.00 4.84
3592 6744 0.250124 TCCGTGTCTCCAAATTGCGT 60.250 50.000 0.00 0.00 0.00 5.24
3593 6745 0.443869 CTCCGTGTCTCCAAATTGCG 59.556 55.000 0.00 0.00 0.00 4.85
3594 6746 1.808411 TCTCCGTGTCTCCAAATTGC 58.192 50.000 0.00 0.00 0.00 3.56
3595 6747 5.376854 AAAATCTCCGTGTCTCCAAATTG 57.623 39.130 0.00 0.00 0.00 2.32
3596 6748 5.534654 TCAAAAATCTCCGTGTCTCCAAATT 59.465 36.000 0.00 0.00 0.00 1.82
3597 6749 5.070001 TCAAAAATCTCCGTGTCTCCAAAT 58.930 37.500 0.00 0.00 0.00 2.32
3598 6750 4.456535 TCAAAAATCTCCGTGTCTCCAAA 58.543 39.130 0.00 0.00 0.00 3.28
3599 6751 4.065088 CTCAAAAATCTCCGTGTCTCCAA 58.935 43.478 0.00 0.00 0.00 3.53
3600 6752 3.664107 CTCAAAAATCTCCGTGTCTCCA 58.336 45.455 0.00 0.00 0.00 3.86
3601 6753 2.416893 GCTCAAAAATCTCCGTGTCTCC 59.583 50.000 0.00 0.00 0.00 3.71
3602 6754 2.416893 GGCTCAAAAATCTCCGTGTCTC 59.583 50.000 0.00 0.00 0.00 3.36
3603 6755 2.427506 GGCTCAAAAATCTCCGTGTCT 58.572 47.619 0.00 0.00 0.00 3.41
3604 6756 1.128692 CGGCTCAAAAATCTCCGTGTC 59.871 52.381 0.00 0.00 35.75 3.67
3605 6757 1.156736 CGGCTCAAAAATCTCCGTGT 58.843 50.000 0.00 0.00 35.75 4.49
3606 6758 3.975992 CGGCTCAAAAATCTCCGTG 57.024 52.632 0.00 0.00 35.75 4.94
3608 6760 0.447801 CCACGGCTCAAAAATCTCCG 59.552 55.000 0.00 0.00 45.04 4.63
3609 6761 1.534729 ACCACGGCTCAAAAATCTCC 58.465 50.000 0.00 0.00 0.00 3.71
3610 6762 2.814336 AGAACCACGGCTCAAAAATCTC 59.186 45.455 0.00 0.00 0.00 2.75
3611 6763 2.554032 CAGAACCACGGCTCAAAAATCT 59.446 45.455 0.00 0.00 0.00 2.40
3612 6764 2.552315 TCAGAACCACGGCTCAAAAATC 59.448 45.455 0.00 0.00 0.00 2.17
3613 6765 2.582052 TCAGAACCACGGCTCAAAAAT 58.418 42.857 0.00 0.00 0.00 1.82
3614 6766 2.045561 TCAGAACCACGGCTCAAAAA 57.954 45.000 0.00 0.00 0.00 1.94
3615 6767 2.270352 ATCAGAACCACGGCTCAAAA 57.730 45.000 0.00 0.00 0.00 2.44
3616 6768 2.354704 CCTATCAGAACCACGGCTCAAA 60.355 50.000 0.00 0.00 0.00 2.69
3617 6769 1.207089 CCTATCAGAACCACGGCTCAA 59.793 52.381 0.00 0.00 0.00 3.02
3618 6770 0.824109 CCTATCAGAACCACGGCTCA 59.176 55.000 0.00 0.00 0.00 4.26
3619 6771 0.824759 ACCTATCAGAACCACGGCTC 59.175 55.000 0.00 0.00 0.00 4.70
3620 6772 0.537188 CACCTATCAGAACCACGGCT 59.463 55.000 0.00 0.00 0.00 5.52
3621 6773 0.462047 CCACCTATCAGAACCACGGC 60.462 60.000 0.00 0.00 0.00 5.68
3622 6774 0.902531 ACCACCTATCAGAACCACGG 59.097 55.000 0.00 0.00 0.00 4.94
3623 6775 2.007049 GCACCACCTATCAGAACCACG 61.007 57.143 0.00 0.00 0.00 4.94
3624 6776 1.279271 AGCACCACCTATCAGAACCAC 59.721 52.381 0.00 0.00 0.00 4.16
3625 6777 1.656587 AGCACCACCTATCAGAACCA 58.343 50.000 0.00 0.00 0.00 3.67
3626 6778 3.553096 CGATAGCACCACCTATCAGAACC 60.553 52.174 9.17 0.00 42.36 3.62
3627 6779 3.068307 ACGATAGCACCACCTATCAGAAC 59.932 47.826 9.17 0.00 42.36 3.01
3628 6780 3.296854 ACGATAGCACCACCTATCAGAA 58.703 45.455 9.17 0.00 42.36 3.02
3629 6781 2.945456 ACGATAGCACCACCTATCAGA 58.055 47.619 9.17 0.00 42.36 3.27
3630 6782 3.568430 TGTACGATAGCACCACCTATCAG 59.432 47.826 9.17 5.32 42.36 2.90
3631 6783 3.558033 TGTACGATAGCACCACCTATCA 58.442 45.455 9.17 0.00 42.36 2.15
3632 6784 4.380655 GGATGTACGATAGCACCACCTATC 60.381 50.000 0.00 0.00 40.05 2.08
3633 6785 3.510360 GGATGTACGATAGCACCACCTAT 59.490 47.826 0.00 0.00 42.67 2.57
3634 6786 2.889045 GGATGTACGATAGCACCACCTA 59.111 50.000 0.00 0.00 42.67 3.08
3635 6787 1.687123 GGATGTACGATAGCACCACCT 59.313 52.381 0.00 0.00 42.67 4.00
3636 6788 1.411246 TGGATGTACGATAGCACCACC 59.589 52.381 0.00 0.00 42.67 4.61
3637 6789 2.470821 GTGGATGTACGATAGCACCAC 58.529 52.381 0.00 0.00 39.20 4.16
3638 6790 1.066454 CGTGGATGTACGATAGCACCA 59.934 52.381 0.00 0.00 46.46 4.17
3639 6791 1.066605 ACGTGGATGTACGATAGCACC 59.933 52.381 5.23 0.00 46.46 5.01
3640 6792 2.486951 ACGTGGATGTACGATAGCAC 57.513 50.000 5.23 0.00 46.46 4.40
3641 6793 2.424246 TCAACGTGGATGTACGATAGCA 59.576 45.455 5.23 0.00 46.46 3.49
3642 6794 3.074504 TCAACGTGGATGTACGATAGC 57.925 47.619 5.23 0.00 46.46 2.97
3643 6795 3.981416 CCATCAACGTGGATGTACGATAG 59.019 47.826 27.21 9.84 46.46 2.08
3644 6796 3.633065 TCCATCAACGTGGATGTACGATA 59.367 43.478 27.21 6.69 46.46 2.92
3645 6797 2.429250 TCCATCAACGTGGATGTACGAT 59.571 45.455 27.21 0.00 46.46 3.73
3646 6798 1.819903 TCCATCAACGTGGATGTACGA 59.180 47.619 27.21 16.74 46.46 3.43
3647 6799 2.159296 TCTCCATCAACGTGGATGTACG 60.159 50.000 27.21 14.90 46.67 3.67
3648 6800 3.119101 AGTCTCCATCAACGTGGATGTAC 60.119 47.826 27.21 21.39 46.67 2.90
3649 6801 3.096852 AGTCTCCATCAACGTGGATGTA 58.903 45.455 27.21 14.32 46.67 2.29
3650 6802 1.902508 AGTCTCCATCAACGTGGATGT 59.097 47.619 27.21 9.34 46.67 3.06
3651 6803 2.680312 AGTCTCCATCAACGTGGATG 57.320 50.000 23.72 23.72 46.67 3.51
3652 6804 2.567169 TGAAGTCTCCATCAACGTGGAT 59.433 45.455 0.00 0.00 46.67 3.41
3653 6805 1.967779 TGAAGTCTCCATCAACGTGGA 59.032 47.619 0.00 0.00 45.78 4.02
3654 6806 2.455674 TGAAGTCTCCATCAACGTGG 57.544 50.000 0.00 0.00 40.76 4.94
3655 6807 3.795561 GTTGAAGTCTCCATCAACGTG 57.204 47.619 3.24 0.00 44.01 4.49
3659 6811 2.549992 CGTGGGTTGAAGTCTCCATCAA 60.550 50.000 0.00 0.00 33.37 2.57
3660 6812 1.001974 CGTGGGTTGAAGTCTCCATCA 59.998 52.381 0.00 0.00 0.00 3.07
3661 6813 1.275291 TCGTGGGTTGAAGTCTCCATC 59.725 52.381 0.00 0.00 0.00 3.51
3662 6814 1.348064 TCGTGGGTTGAAGTCTCCAT 58.652 50.000 0.00 0.00 0.00 3.41
3663 6815 1.070134 CTTCGTGGGTTGAAGTCTCCA 59.930 52.381 0.00 0.00 38.39 3.86
3664 6816 1.608283 CCTTCGTGGGTTGAAGTCTCC 60.608 57.143 2.47 0.00 40.96 3.71
3665 6817 1.797025 CCTTCGTGGGTTGAAGTCTC 58.203 55.000 2.47 0.00 40.96 3.36


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.