Multiple sequence alignment - TraesCS4B01G079400

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G079400 chr4B 100.000 5621 0 0 1 5621 76998623 77004243 0.000000e+00 10381
1 TraesCS4B01G079400 chr4B 79.396 563 101 13 4081 4637 77513592 77514145 3.180000e-102 383
2 TraesCS4B01G079400 chr4B 90.000 150 13 2 3604 3752 77513377 77513525 5.750000e-45 193
3 TraesCS4B01G079400 chr4D 95.313 2987 104 21 1999 4955 52493781 52496761 0.000000e+00 4708
4 TraesCS4B01G079400 chr4D 91.370 1854 86 34 178 2013 52491967 52493764 0.000000e+00 2470
5 TraesCS4B01G079400 chr4D 79.541 567 88 20 4080 4636 52753376 52753924 4.110000e-101 379
6 TraesCS4B01G079400 chr4D 88.816 152 15 2 3602 3752 52753080 52753230 9.620000e-43 185
7 TraesCS4B01G079400 chr4A 92.141 2163 103 29 3037 5151 544175849 544173706 0.000000e+00 2990
8 TraesCS4B01G079400 chr4A 94.326 1692 82 9 325 2013 544178652 544176972 0.000000e+00 2580
9 TraesCS4B01G079400 chr4A 93.721 1067 47 9 1999 3047 544176956 544175892 0.000000e+00 1581
10 TraesCS4B01G079400 chr4A 96.834 379 10 1 5245 5621 688043962 688044340 2.860000e-177 632
11 TraesCS4B01G079400 chr4A 81.315 289 44 8 2005 2289 544060181 544059899 5.670000e-55 226
12 TraesCS4B01G079400 chr4A 90.217 92 7 2 253 343 544178765 544178675 9.890000e-23 119
13 TraesCS4B01G079400 chr6B 96.817 377 10 2 5245 5621 679336758 679336384 3.700000e-176 628
14 TraesCS4B01G079400 chr6B 96.552 377 13 0 5245 5621 75529113 75529489 4.780000e-175 625
15 TraesCS4B01G079400 chr6B 95.756 377 15 1 5245 5621 400297069 400297444 1.730000e-169 606
16 TraesCS4B01G079400 chr6B 86.982 169 16 3 3 170 695057979 695057816 9.620000e-43 185
17 TraesCS4B01G079400 chr2B 95.844 385 14 2 5237 5621 762099927 762099545 6.190000e-174 621
18 TraesCS4B01G079400 chr2B 88.757 169 13 3 1 168 602213959 602214122 9.550000e-48 202
19 TraesCS4B01G079400 chr2B 98.246 114 2 0 3219 3332 87963133 87963020 3.430000e-47 200
20 TraesCS4B01G079400 chr7B 95.491 377 16 1 5245 5621 606373933 606374308 8.060000e-168 601
21 TraesCS4B01G079400 chr7B 94.764 382 16 3 5244 5621 705313427 705313046 4.850000e-165 592
22 TraesCS4B01G079400 chr6D 94.987 379 16 3 5245 5621 47377882 47377505 4.850000e-165 592
23 TraesCS4B01G079400 chr6D 94.695 377 20 0 5245 5621 47609613 47609989 2.260000e-163 586
24 TraesCS4B01G079400 chr6D 97.368 114 3 0 3219 3332 277272253 277272140 1.600000e-45 195
25 TraesCS4B01G079400 chr5B 88.304 171 14 3 1 170 633278254 633278089 3.430000e-47 200
26 TraesCS4B01G079400 chrUn 97.368 114 3 0 3219 3332 45131361 45131474 1.600000e-45 195
27 TraesCS4B01G079400 chrUn 97.368 114 3 0 3219 3332 267448838 267448725 1.600000e-45 195
28 TraesCS4B01G079400 chrUn 97.368 114 3 0 3219 3332 304293289 304293176 1.600000e-45 195
29 TraesCS4B01G079400 chrUn 97.368 114 3 0 3219 3332 369086944 369087057 1.600000e-45 195
30 TraesCS4B01G079400 chr5D 97.368 114 3 0 3219 3332 80101065 80101178 1.600000e-45 195
31 TraesCS4B01G079400 chr5D 87.719 171 15 3 1 170 439214766 439214931 1.600000e-45 195
32 TraesCS4B01G079400 chr5D 88.050 159 12 4 1 158 399326883 399327035 1.240000e-41 182
33 TraesCS4B01G079400 chr2D 87.719 171 15 3 1 170 186630642 186630807 1.600000e-45 195
34 TraesCS4B01G079400 chr1A 97.368 114 3 0 3219 3332 94738481 94738594 1.600000e-45 195
35 TraesCS4B01G079400 chr1A 86.550 171 17 3 1 170 276800759 276800924 3.460000e-42 183
36 TraesCS4B01G079400 chr7D 86.982 169 16 3 3 170 549124068 549123905 9.620000e-43 185
37 TraesCS4B01G079400 chr7A 86.550 171 16 4 1 170 634440068 634439904 1.240000e-41 182
38 TraesCS4B01G079400 chr2A 82.759 116 20 0 2417 2532 687067164 687067279 2.770000e-18 104


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G079400 chr4B 76998623 77004243 5620 False 10381.0 10381 100.00000 1 5621 1 chr4B.!!$F1 5620
1 TraesCS4B01G079400 chr4B 77513377 77514145 768 False 288.0 383 84.69800 3604 4637 2 chr4B.!!$F2 1033
2 TraesCS4B01G079400 chr4D 52491967 52496761 4794 False 3589.0 4708 93.34150 178 4955 2 chr4D.!!$F1 4777
3 TraesCS4B01G079400 chr4D 52753080 52753924 844 False 282.0 379 84.17850 3602 4636 2 chr4D.!!$F2 1034
4 TraesCS4B01G079400 chr4A 544173706 544178765 5059 True 1817.5 2990 92.60125 253 5151 4 chr4A.!!$R2 4898

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
35 36 0.035458 CCTCATCAGGGGCGTTATCC 59.965 60.000 0.00 0.0 35.89 2.59 F
41 42 0.182537 CAGGGGCGTTATCCATCCAA 59.817 55.000 0.00 0.0 0.00 3.53 F
323 325 0.915364 GAGAATCCTGGTCCCTGCTT 59.085 55.000 0.00 0.0 0.00 3.91 F
1097 1163 1.079127 ACCGGTCTCAAAGATGGCG 60.079 57.895 0.00 0.0 0.00 5.69 F
2277 2380 1.179152 TTGTCCAGCTGAATGCATGG 58.821 50.000 17.39 0.0 45.94 3.66 F
2824 2928 0.030705 AGCTATGCCTCTTCCTCCCA 60.031 55.000 0.00 0.0 0.00 4.37 F
2999 3117 0.108424 GATCCTCTTGCGAGTGCTGT 60.108 55.000 0.00 0.0 43.34 4.40 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1079 1145 1.079127 CGCCATCTTTGAGACCGGT 60.079 57.895 6.92 6.92 0.00 5.28 R
1642 1710 2.119801 CTGGTAATCCAAGCAGCAGT 57.880 50.000 0.00 0.00 43.81 4.40 R
2003 2103 2.287644 CGTGCAAGTGTCATGTTTCAGA 59.712 45.455 0.00 0.00 0.00 3.27 R
2756 2860 0.694771 AGCAGGAATTGGAGCTGTCA 59.305 50.000 0.00 0.00 35.72 3.58 R
4032 4273 0.179048 TGCACACTAAGCTGCACACT 60.179 50.000 1.02 0.00 38.49 3.55 R
4387 4647 0.179134 AGCTTGACATACTCGTCCGC 60.179 55.000 0.00 0.00 34.88 5.54 R
4976 5240 2.203153 ACACGGAGCCACACCAAC 60.203 61.111 0.00 0.00 0.00 3.77 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 7.560368 ACAAGTAAAGAGATAACCTCATCAGG 58.440 38.462 0.00 0.00 46.87 3.86
26 27 6.739331 AGTAAAGAGATAACCTCATCAGGG 57.261 41.667 0.00 0.00 45.53 4.45
27 28 5.604650 AGTAAAGAGATAACCTCATCAGGGG 59.395 44.000 0.00 0.00 45.53 4.79
28 29 2.334023 AGAGATAACCTCATCAGGGGC 58.666 52.381 0.00 0.00 45.53 5.80
29 30 1.001406 GAGATAACCTCATCAGGGGCG 59.999 57.143 0.00 0.00 45.53 6.13
30 31 0.759346 GATAACCTCATCAGGGGCGT 59.241 55.000 0.00 0.00 45.53 5.68
31 32 1.141053 GATAACCTCATCAGGGGCGTT 59.859 52.381 0.00 0.00 45.53 4.84
32 33 1.868713 TAACCTCATCAGGGGCGTTA 58.131 50.000 0.00 0.00 45.53 3.18
33 34 1.213296 AACCTCATCAGGGGCGTTAT 58.787 50.000 0.00 0.00 45.53 1.89
34 35 0.759346 ACCTCATCAGGGGCGTTATC 59.241 55.000 0.00 0.00 45.53 1.75
35 36 0.035458 CCTCATCAGGGGCGTTATCC 59.965 60.000 0.00 0.00 35.89 2.59
36 37 0.758734 CTCATCAGGGGCGTTATCCA 59.241 55.000 0.00 0.00 0.00 3.41
37 38 1.349026 CTCATCAGGGGCGTTATCCAT 59.651 52.381 0.00 0.00 0.00 3.41
38 39 1.347707 TCATCAGGGGCGTTATCCATC 59.652 52.381 0.00 0.00 0.00 3.51
39 40 0.693049 ATCAGGGGCGTTATCCATCC 59.307 55.000 0.00 0.00 0.00 3.51
40 41 0.692756 TCAGGGGCGTTATCCATCCA 60.693 55.000 0.00 0.00 0.00 3.41
41 42 0.182537 CAGGGGCGTTATCCATCCAA 59.817 55.000 0.00 0.00 0.00 3.53
42 43 0.923358 AGGGGCGTTATCCATCCAAA 59.077 50.000 0.00 0.00 0.00 3.28
43 44 1.029681 GGGGCGTTATCCATCCAAAC 58.970 55.000 0.00 0.00 0.00 2.93
44 45 1.683629 GGGGCGTTATCCATCCAAACA 60.684 52.381 0.00 0.00 0.00 2.83
45 46 1.404035 GGGCGTTATCCATCCAAACAC 59.596 52.381 0.00 0.00 0.00 3.32
46 47 2.365582 GGCGTTATCCATCCAAACACT 58.634 47.619 0.00 0.00 0.00 3.55
47 48 2.354821 GGCGTTATCCATCCAAACACTC 59.645 50.000 0.00 0.00 0.00 3.51
48 49 2.030457 GCGTTATCCATCCAAACACTCG 59.970 50.000 0.00 0.00 0.00 4.18
49 50 3.517602 CGTTATCCATCCAAACACTCGA 58.482 45.455 0.00 0.00 0.00 4.04
50 51 3.930229 CGTTATCCATCCAAACACTCGAA 59.070 43.478 0.00 0.00 0.00 3.71
51 52 4.032900 CGTTATCCATCCAAACACTCGAAG 59.967 45.833 0.00 0.00 0.00 3.79
52 53 2.472695 TCCATCCAAACACTCGAAGG 57.527 50.000 0.00 0.00 0.00 3.46
53 54 1.974957 TCCATCCAAACACTCGAAGGA 59.025 47.619 0.00 0.00 0.00 3.36
54 55 2.028112 TCCATCCAAACACTCGAAGGAG 60.028 50.000 0.00 0.00 46.13 3.69
55 56 2.028112 CCATCCAAACACTCGAAGGAGA 60.028 50.000 0.00 0.00 43.27 3.71
56 57 3.557054 CCATCCAAACACTCGAAGGAGAA 60.557 47.826 0.00 0.00 43.27 2.87
57 58 3.830744 TCCAAACACTCGAAGGAGAAA 57.169 42.857 0.00 0.00 43.27 2.52
58 59 4.145365 TCCAAACACTCGAAGGAGAAAA 57.855 40.909 0.00 0.00 43.27 2.29
59 60 3.875134 TCCAAACACTCGAAGGAGAAAAC 59.125 43.478 0.00 0.00 43.27 2.43
60 61 3.003378 CCAAACACTCGAAGGAGAAAACC 59.997 47.826 0.00 0.00 43.27 3.27
61 62 3.840124 AACACTCGAAGGAGAAAACCT 57.160 42.857 0.00 0.00 43.27 3.50
62 63 3.388345 ACACTCGAAGGAGAAAACCTC 57.612 47.619 0.00 0.00 43.27 3.85
63 64 2.288273 ACACTCGAAGGAGAAAACCTCG 60.288 50.000 0.00 0.00 43.27 4.63
64 65 1.336980 ACTCGAAGGAGAAAACCTCGC 60.337 52.381 0.00 0.00 43.27 5.03
65 66 0.966920 TCGAAGGAGAAAACCTCGCT 59.033 50.000 0.00 0.00 42.89 4.93
66 67 2.163815 CTCGAAGGAGAAAACCTCGCTA 59.836 50.000 0.00 0.00 43.27 4.26
67 68 2.559668 TCGAAGGAGAAAACCTCGCTAA 59.440 45.455 0.00 0.00 42.89 3.09
68 69 2.666994 CGAAGGAGAAAACCTCGCTAAC 59.333 50.000 0.00 0.00 42.89 2.34
69 70 2.764439 AGGAGAAAACCTCGCTAACC 57.236 50.000 0.00 0.00 42.89 2.85
70 71 1.975680 AGGAGAAAACCTCGCTAACCA 59.024 47.619 0.00 0.00 42.89 3.67
71 72 2.572104 AGGAGAAAACCTCGCTAACCAT 59.428 45.455 0.00 0.00 42.89 3.55
72 73 2.678336 GGAGAAAACCTCGCTAACCATG 59.322 50.000 0.00 0.00 42.89 3.66
73 74 2.084546 AGAAAACCTCGCTAACCATGC 58.915 47.619 0.00 0.00 0.00 4.06
74 75 2.084546 GAAAACCTCGCTAACCATGCT 58.915 47.619 0.00 0.00 0.00 3.79
75 76 3.055385 AGAAAACCTCGCTAACCATGCTA 60.055 43.478 0.00 0.00 0.00 3.49
76 77 2.604046 AACCTCGCTAACCATGCTAG 57.396 50.000 0.00 0.00 0.00 3.42
77 78 1.486211 ACCTCGCTAACCATGCTAGT 58.514 50.000 0.00 0.00 0.00 2.57
78 79 1.831736 ACCTCGCTAACCATGCTAGTT 59.168 47.619 0.00 0.00 0.00 2.24
79 80 2.159085 ACCTCGCTAACCATGCTAGTTC 60.159 50.000 0.00 0.00 0.00 3.01
80 81 2.159099 CCTCGCTAACCATGCTAGTTCA 60.159 50.000 0.00 0.00 0.00 3.18
81 82 3.493350 CCTCGCTAACCATGCTAGTTCAT 60.493 47.826 0.00 0.00 0.00 2.57
82 83 3.457234 TCGCTAACCATGCTAGTTCATG 58.543 45.455 3.95 3.95 42.53 3.07
83 84 3.132111 TCGCTAACCATGCTAGTTCATGA 59.868 43.478 10.84 0.00 44.94 3.07
84 85 3.492383 CGCTAACCATGCTAGTTCATGAG 59.508 47.826 10.84 3.59 44.94 2.90
85 86 3.249559 GCTAACCATGCTAGTTCATGAGC 59.750 47.826 10.84 0.50 44.94 4.26
86 87 3.641434 AACCATGCTAGTTCATGAGCT 57.359 42.857 16.75 16.75 44.94 4.09
87 88 4.760530 AACCATGCTAGTTCATGAGCTA 57.239 40.909 17.19 17.19 44.94 3.32
88 89 4.065321 ACCATGCTAGTTCATGAGCTAC 57.935 45.455 14.61 12.02 44.94 3.58
89 90 3.708631 ACCATGCTAGTTCATGAGCTACT 59.291 43.478 14.61 9.23 44.94 2.57
90 91 4.202202 ACCATGCTAGTTCATGAGCTACTC 60.202 45.833 14.61 10.20 44.94 2.59
91 92 3.699779 TGCTAGTTCATGAGCTACTCG 57.300 47.619 14.61 7.43 39.54 4.18
92 93 3.279434 TGCTAGTTCATGAGCTACTCGA 58.721 45.455 14.61 0.00 39.54 4.04
93 94 3.885901 TGCTAGTTCATGAGCTACTCGAT 59.114 43.478 14.61 0.00 39.54 3.59
94 95 4.339530 TGCTAGTTCATGAGCTACTCGATT 59.660 41.667 14.61 0.00 39.54 3.34
95 96 5.531287 TGCTAGTTCATGAGCTACTCGATTA 59.469 40.000 14.61 0.00 39.54 1.75
96 97 6.039382 TGCTAGTTCATGAGCTACTCGATTAA 59.961 38.462 14.61 0.00 39.54 1.40
97 98 7.087639 GCTAGTTCATGAGCTACTCGATTAAT 58.912 38.462 14.61 0.00 35.73 1.40
98 99 7.596995 GCTAGTTCATGAGCTACTCGATTAATT 59.403 37.037 14.61 0.00 35.73 1.40
100 101 8.804688 AGTTCATGAGCTACTCGATTAATTAC 57.195 34.615 10.73 0.00 32.35 1.89
101 102 7.591795 AGTTCATGAGCTACTCGATTAATTACG 59.408 37.037 10.73 0.00 32.35 3.18
102 103 5.856986 TCATGAGCTACTCGATTAATTACGC 59.143 40.000 0.00 0.00 32.35 4.42
103 104 5.434352 TGAGCTACTCGATTAATTACGCT 57.566 39.130 0.00 0.00 32.35 5.07
104 105 5.450171 TGAGCTACTCGATTAATTACGCTC 58.550 41.667 11.64 11.64 41.11 5.03
105 106 5.238868 TGAGCTACTCGATTAATTACGCTCT 59.761 40.000 16.55 1.91 41.25 4.09
106 107 5.691815 AGCTACTCGATTAATTACGCTCTC 58.308 41.667 0.00 0.00 0.00 3.20
107 108 5.470777 AGCTACTCGATTAATTACGCTCTCT 59.529 40.000 0.00 0.00 0.00 3.10
108 109 6.649973 AGCTACTCGATTAATTACGCTCTCTA 59.350 38.462 0.00 0.00 0.00 2.43
109 110 7.334921 AGCTACTCGATTAATTACGCTCTCTAT 59.665 37.037 0.00 0.00 0.00 1.98
110 111 7.964011 GCTACTCGATTAATTACGCTCTCTATT 59.036 37.037 0.00 0.00 0.00 1.73
113 114 8.781196 ACTCGATTAATTACGCTCTCTATTACA 58.219 33.333 0.00 0.00 0.00 2.41
114 115 9.608617 CTCGATTAATTACGCTCTCTATTACAA 57.391 33.333 0.00 0.00 0.00 2.41
121 122 9.935241 AATTACGCTCTCTATTACAATGATCAT 57.065 29.630 1.18 1.18 0.00 2.45
124 125 8.978564 ACGCTCTCTATTACAATGATCATAAG 57.021 34.615 9.04 7.55 0.00 1.73
125 126 8.580720 ACGCTCTCTATTACAATGATCATAAGT 58.419 33.333 9.04 13.08 0.00 2.24
126 127 8.858186 CGCTCTCTATTACAATGATCATAAGTG 58.142 37.037 18.84 12.47 0.00 3.16
127 128 9.920133 GCTCTCTATTACAATGATCATAAGTGA 57.080 33.333 18.84 13.44 39.04 3.41
137 138 9.645128 ACAATGATCATAAGTGATATGGGAAAA 57.355 29.630 9.04 0.00 44.96 2.29
162 163 9.733556 AAATATAATGATCATAAGTAACGGGCA 57.266 29.630 9.04 0.00 0.00 5.36
163 164 9.905713 AATATAATGATCATAAGTAACGGGCAT 57.094 29.630 9.04 0.00 0.00 4.40
164 165 5.947228 AATGATCATAAGTAACGGGCATG 57.053 39.130 9.04 0.00 0.00 4.06
165 166 4.415881 TGATCATAAGTAACGGGCATGT 57.584 40.909 0.00 0.00 0.00 3.21
166 167 5.538849 TGATCATAAGTAACGGGCATGTA 57.461 39.130 0.00 0.00 0.00 2.29
167 168 6.109156 TGATCATAAGTAACGGGCATGTAT 57.891 37.500 0.00 0.00 0.00 2.29
168 169 7.234661 TGATCATAAGTAACGGGCATGTATA 57.765 36.000 0.00 0.00 0.00 1.47
169 170 7.672240 TGATCATAAGTAACGGGCATGTATAA 58.328 34.615 0.00 0.00 0.00 0.98
170 171 7.601130 TGATCATAAGTAACGGGCATGTATAAC 59.399 37.037 0.00 0.00 0.00 1.89
171 172 6.225318 TCATAAGTAACGGGCATGTATAACC 58.775 40.000 0.00 0.00 0.00 2.85
172 173 4.765813 AAGTAACGGGCATGTATAACCT 57.234 40.909 0.00 0.00 0.00 3.50
173 174 5.874897 AAGTAACGGGCATGTATAACCTA 57.125 39.130 0.00 0.00 0.00 3.08
174 175 5.464030 AGTAACGGGCATGTATAACCTAG 57.536 43.478 0.00 0.00 0.00 3.02
175 176 4.897670 AGTAACGGGCATGTATAACCTAGT 59.102 41.667 0.00 0.00 0.00 2.57
176 177 4.765813 AACGGGCATGTATAACCTAGTT 57.234 40.909 0.00 0.00 0.00 2.24
210 211 8.502105 AACTTCAAGTATTTTAATACGAGGGG 57.498 34.615 0.00 3.17 44.59 4.79
211 212 7.052248 ACTTCAAGTATTTTAATACGAGGGGG 58.948 38.462 6.91 2.00 44.59 5.40
220 221 6.865834 TTTAATACGAGGGGGTACACTTTA 57.134 37.500 0.00 0.00 0.00 1.85
225 226 4.582869 ACGAGGGGGTACACTTTATTTTC 58.417 43.478 0.00 0.00 0.00 2.29
226 227 3.943381 CGAGGGGGTACACTTTATTTTCC 59.057 47.826 0.00 0.00 0.00 3.13
227 228 4.275810 GAGGGGGTACACTTTATTTTCCC 58.724 47.826 0.00 0.00 0.00 3.97
233 234 5.296035 GGGTACACTTTATTTTCCCGATGAG 59.704 44.000 0.00 0.00 0.00 2.90
250 251 3.914426 TGAGCCCTAAAAGTCTCATCC 57.086 47.619 0.00 0.00 31.35 3.51
251 252 3.454858 TGAGCCCTAAAAGTCTCATCCT 58.545 45.455 0.00 0.00 31.35 3.24
256 257 2.507471 CCTAAAAGTCTCATCCTGGGCT 59.493 50.000 0.00 0.00 0.00 5.19
290 291 2.480555 GTGCAAACGGATCCAGCG 59.519 61.111 13.41 0.00 0.00 5.18
292 293 1.078497 TGCAAACGGATCCAGCGAT 60.078 52.632 13.41 0.00 0.00 4.58
300 301 2.093658 ACGGATCCAGCGATTGTTTACT 60.094 45.455 13.41 0.00 0.00 2.24
323 325 0.915364 GAGAATCCTGGTCCCTGCTT 59.085 55.000 0.00 0.00 0.00 3.91
440 494 3.653122 ATCCACCCCTACCCGCCTT 62.653 63.158 0.00 0.00 0.00 4.35
486 540 2.829003 CGCAGAGCCTCCTCCGTA 60.829 66.667 0.00 0.00 38.96 4.02
535 593 2.426414 CCTAGCTTCCCACCATCCTAGA 60.426 54.545 0.00 0.00 0.00 2.43
678 737 3.130340 CCCATATGTTGTTTTCCCGGAAG 59.870 47.826 0.73 0.00 0.00 3.46
704 763 2.151202 GGGAATGCAAGTCGAGAAACA 58.849 47.619 0.00 0.00 0.00 2.83
708 767 4.391830 GGAATGCAAGTCGAGAAACACATA 59.608 41.667 0.00 0.00 0.00 2.29
761 820 1.614449 ATAGTGGGTATTGGGGGCAA 58.386 50.000 0.00 0.00 0.00 4.52
779 845 4.103311 GGGCAAGAATTCCAGATACTAGGT 59.897 45.833 0.65 0.00 0.00 3.08
780 846 5.398012 GGGCAAGAATTCCAGATACTAGGTT 60.398 44.000 0.65 0.00 0.00 3.50
781 847 6.122964 GGCAAGAATTCCAGATACTAGGTTT 58.877 40.000 0.65 0.00 0.00 3.27
783 849 7.773690 GGCAAGAATTCCAGATACTAGGTTTTA 59.226 37.037 0.65 0.00 0.00 1.52
784 850 8.831550 GCAAGAATTCCAGATACTAGGTTTTAG 58.168 37.037 0.65 0.00 0.00 1.85
785 851 9.331282 CAAGAATTCCAGATACTAGGTTTTAGG 57.669 37.037 0.65 0.00 0.00 2.69
786 852 8.035448 AGAATTCCAGATACTAGGTTTTAGGG 57.965 38.462 0.65 0.00 0.00 3.53
787 853 6.765355 ATTCCAGATACTAGGTTTTAGGGG 57.235 41.667 0.00 0.00 0.00 4.79
791 857 5.907079 CCAGATACTAGGTTTTAGGGGGTTA 59.093 44.000 0.00 0.00 0.00 2.85
792 858 6.561454 CCAGATACTAGGTTTTAGGGGGTTAT 59.439 42.308 0.00 0.00 0.00 1.89
793 859 7.256583 CCAGATACTAGGTTTTAGGGGGTTATC 60.257 44.444 0.00 0.00 0.00 1.75
794 860 7.513091 CAGATACTAGGTTTTAGGGGGTTATCT 59.487 40.741 0.00 0.00 0.00 1.98
795 861 5.970501 ACTAGGTTTTAGGGGGTTATCTG 57.029 43.478 0.00 0.00 0.00 2.90
796 862 5.356575 ACTAGGTTTTAGGGGGTTATCTGT 58.643 41.667 0.00 0.00 0.00 3.41
797 863 5.794289 ACTAGGTTTTAGGGGGTTATCTGTT 59.206 40.000 0.00 0.00 0.00 3.16
798 864 5.610429 AGGTTTTAGGGGGTTATCTGTTT 57.390 39.130 0.00 0.00 0.00 2.83
848 914 4.643784 GGACTTGCCAGATCAATCAAGAAT 59.356 41.667 20.37 6.03 39.22 2.40
985 1051 5.749588 TGATTGTTTGCTGTAATATGCATGC 59.250 36.000 11.82 11.82 39.07 4.06
1052 1118 2.225293 CGACCCCCTCCTCATCCTATAA 60.225 54.545 0.00 0.00 0.00 0.98
1055 1121 3.146833 ACCCCCTCCTCATCCTATAACAT 59.853 47.826 0.00 0.00 0.00 2.71
1097 1163 1.079127 ACCGGTCTCAAAGATGGCG 60.079 57.895 0.00 0.00 0.00 5.69
1263 1330 5.941058 TGCTACATTTCTTTTACAATCCGGA 59.059 36.000 6.61 6.61 0.00 5.14
1270 1337 9.855021 CATTTCTTTTACAATCCGGACTAATTT 57.145 29.630 6.12 0.00 0.00 1.82
1410 1478 5.799213 CAGAACTGTGTATCTTTCCTTCCT 58.201 41.667 0.00 0.00 0.00 3.36
1446 1514 5.683876 TTCCCTTATCCTCTGAAGTTCAG 57.316 43.478 24.37 24.37 45.59 3.02
1472 1540 7.261688 TCTATCAGCCATCCATGAATGATAA 57.738 36.000 0.00 4.85 36.02 1.75
1479 1547 6.602406 AGCCATCCATGAATGATAAATCTAGC 59.398 38.462 0.00 0.00 0.00 3.42
1535 1603 4.363138 CAACAAAGAAGGAAACTCAAGGC 58.637 43.478 0.00 0.00 42.68 4.35
1597 1665 4.624015 CCACGAGACAAGGTACTGTAAAA 58.376 43.478 0.00 0.00 40.86 1.52
1801 1869 7.749126 GTCAGTGTTTAGGATTATTTTTGACGG 59.251 37.037 0.00 0.00 0.00 4.79
1840 1908 5.630680 GCTGTTTTCATTAATGATATGGCCG 59.369 40.000 18.61 6.24 36.56 6.13
1843 1911 7.950512 TGTTTTCATTAATGATATGGCCGAAT 58.049 30.769 18.61 0.00 36.56 3.34
1873 1941 2.351706 TAAACGTGAAAGCCTGGGTT 57.648 45.000 5.07 5.07 0.00 4.11
1888 1956 4.932200 GCCTGGGTTTAGAGATTATGATCG 59.068 45.833 0.00 0.00 37.37 3.69
1893 1961 9.144747 CTGGGTTTAGAGATTATGATCGTAATG 57.855 37.037 22.13 2.73 37.37 1.90
1957 2026 3.200165 AGGCTTTAGTATCAACAGACCCC 59.800 47.826 0.00 0.00 0.00 4.95
1958 2027 3.054655 GGCTTTAGTATCAACAGACCCCA 60.055 47.826 0.00 0.00 0.00 4.96
1959 2028 4.566907 GGCTTTAGTATCAACAGACCCCAA 60.567 45.833 0.00 0.00 0.00 4.12
1966 2035 6.074648 AGTATCAACAGACCCCAAATTTTCA 58.925 36.000 0.00 0.00 0.00 2.69
2079 2179 5.278957 CCACCAAAGTTTCTGGTTATTCAGG 60.279 44.000 0.00 0.00 45.13 3.86
2277 2380 1.179152 TTGTCCAGCTGAATGCATGG 58.821 50.000 17.39 0.00 45.94 3.66
2294 2397 5.011586 TGCATGGACAATCATTTTCAGAGA 58.988 37.500 0.00 0.00 0.00 3.10
2436 2539 2.488153 CCTTGACGAGAAAATCAACCCC 59.512 50.000 0.00 0.00 31.62 4.95
2495 2598 2.552315 GGTATGTGCCAATATTCGGTGG 59.448 50.000 6.01 0.00 38.00 4.61
2689 2793 7.530426 AAGAGTTGAAATTACAAATGCTCCT 57.470 32.000 0.00 0.00 0.00 3.69
2690 2794 6.917533 AGAGTTGAAATTACAAATGCTCCTG 58.082 36.000 0.00 0.00 0.00 3.86
2691 2795 6.491403 AGAGTTGAAATTACAAATGCTCCTGT 59.509 34.615 0.00 0.00 0.00 4.00
2756 2860 8.627208 AATCTCATGAACTACTCACAAAATGT 57.373 30.769 0.00 0.00 36.69 2.71
2824 2928 0.030705 AGCTATGCCTCTTCCTCCCA 60.031 55.000 0.00 0.00 0.00 4.37
2865 2969 2.837947 TCCTGATGGATGAGTGAGGTT 58.162 47.619 0.00 0.00 37.46 3.50
2885 2993 3.947132 GAGCGCCAGAAGCTGCAGA 62.947 63.158 20.43 0.00 46.13 4.26
2999 3117 0.108424 GATCCTCTTGCGAGTGCTGT 60.108 55.000 0.00 0.00 43.34 4.40
3008 3126 1.336517 TGCGAGTGCTGTACTACCAAC 60.337 52.381 0.00 0.00 40.53 3.77
3009 3127 1.067776 GCGAGTGCTGTACTACCAACT 60.068 52.381 0.00 0.00 40.53 3.16
3126 3298 3.326006 GGATGATCTTGTAGGCCTCATCA 59.674 47.826 23.00 17.39 42.46 3.07
3182 3354 1.949525 ACGCCAGCCACATGAATATTC 59.050 47.619 8.60 8.60 0.00 1.75
3365 3565 3.935203 CCACTGCACGAAACTCATTATCT 59.065 43.478 0.00 0.00 0.00 1.98
3429 3629 0.400213 TGTAAGCTGGTGTCCCCTTG 59.600 55.000 0.00 0.00 0.00 3.61
3430 3630 0.690762 GTAAGCTGGTGTCCCCTTGA 59.309 55.000 0.00 0.00 0.00 3.02
3431 3631 1.073284 GTAAGCTGGTGTCCCCTTGAA 59.927 52.381 0.00 0.00 0.00 2.69
3432 3632 0.779997 AAGCTGGTGTCCCCTTGAAT 59.220 50.000 0.00 0.00 0.00 2.57
3450 3663 1.868713 ATGAATGCTGCCAATGGGAA 58.131 45.000 0.00 0.00 35.59 3.97
3492 3705 8.040716 GCTTAATGCCTTGTTTCTAGAAGTAA 57.959 34.615 5.12 4.55 35.15 2.24
3771 3991 2.189594 TGGCACCAATCTCTTCACTG 57.810 50.000 0.00 0.00 0.00 3.66
3803 4044 6.069673 TCAGAATTCTGTTTATCAGGCCCTTA 60.070 38.462 29.80 6.77 44.12 2.69
3821 4062 7.182206 AGGCCCTTAGTTCTAAATAACTGAGAA 59.818 37.037 0.00 0.00 42.64 2.87
4050 4291 0.514691 GAGTGTGCAGCTTAGTGTGC 59.485 55.000 0.00 2.43 40.29 4.57
4260 4503 0.528924 TACATGGAGCGCTACAACGT 59.471 50.000 29.19 27.16 34.88 3.99
4354 4612 2.511600 GGGCGGTGTTCATCCTCG 60.512 66.667 0.00 0.00 0.00 4.63
4360 4619 1.652124 CGGTGTTCATCCTCGTTTACG 59.348 52.381 0.00 0.00 41.45 3.18
4387 4647 1.682854 TGCCTTTGTTTCAGGAAGCAG 59.317 47.619 0.00 0.00 33.22 4.24
4546 4806 1.813753 GCATTTACCAGCGCTCCGA 60.814 57.895 7.13 0.00 0.00 4.55
4642 4902 8.514594 TCTAGATGTTTATTCACCTTTTTGCTG 58.485 33.333 0.00 0.00 0.00 4.41
4647 4907 6.372659 TGTTTATTCACCTTTTTGCTGCAAAA 59.627 30.769 30.53 30.53 40.85 2.44
4696 4956 1.506493 CTAGCAAGCGGACATGGATC 58.494 55.000 0.00 0.00 0.00 3.36
4993 5257 2.203153 GTTGGTGTGGCTCCGTGT 60.203 61.111 0.00 0.00 0.00 4.49
4995 5259 3.765894 TTGGTGTGGCTCCGTGTGG 62.766 63.158 0.00 0.00 0.00 4.17
5033 5297 1.079681 TGTCAACGTGATACCGGCC 60.080 57.895 0.00 0.00 0.00 6.13
5082 5346 2.898705 AGCGGCTAAGAACATCTTCAG 58.101 47.619 0.00 0.00 37.89 3.02
5083 5347 2.234908 AGCGGCTAAGAACATCTTCAGT 59.765 45.455 0.00 0.00 37.89 3.41
5090 5354 4.899352 AAGAACATCTTCAGTAGCACCT 57.101 40.909 0.00 0.00 28.99 4.00
5124 5388 1.447838 CCCCCTGTCGATGTGAACG 60.448 63.158 0.00 0.00 0.00 3.95
5126 5390 0.736325 CCCCTGTCGATGTGAACGTC 60.736 60.000 0.00 0.00 0.00 4.34
5127 5391 0.038618 CCCTGTCGATGTGAACGTCA 60.039 55.000 3.71 0.00 32.30 4.35
5151 5415 6.647895 CAGTCTCCCAATGAAAGAATTTTTGG 59.352 38.462 0.00 0.00 39.27 3.28
5152 5416 6.327365 AGTCTCCCAATGAAAGAATTTTTGGT 59.673 34.615 0.00 0.00 39.27 3.67
5153 5417 6.646653 GTCTCCCAATGAAAGAATTTTTGGTC 59.353 38.462 0.00 0.00 39.27 4.02
5154 5418 6.554605 TCTCCCAATGAAAGAATTTTTGGTCT 59.445 34.615 0.00 0.00 39.27 3.85
5155 5419 7.071071 TCTCCCAATGAAAGAATTTTTGGTCTT 59.929 33.333 0.00 0.00 39.27 3.01
5156 5420 8.256356 TCCCAATGAAAGAATTTTTGGTCTTA 57.744 30.769 0.00 0.00 39.27 2.10
5157 5421 8.879227 TCCCAATGAAAGAATTTTTGGTCTTAT 58.121 29.630 0.00 0.00 39.27 1.73
5175 5439 9.679661 TGGTCTTATATGATACAATGTGTTGTT 57.320 29.630 0.00 0.00 46.07 2.83
5182 5446 7.707624 ATGATACAATGTGTTGTTTGATCCT 57.292 32.000 0.00 0.00 46.07 3.24
5183 5447 7.523293 TGATACAATGTGTTGTTTGATCCTT 57.477 32.000 0.00 0.00 46.07 3.36
5184 5448 7.369607 TGATACAATGTGTTGTTTGATCCTTG 58.630 34.615 0.00 0.00 46.07 3.61
5185 5449 4.947645 ACAATGTGTTGTTTGATCCTTGG 58.052 39.130 0.00 0.00 46.07 3.61
5186 5450 4.405358 ACAATGTGTTGTTTGATCCTTGGT 59.595 37.500 0.00 0.00 46.07 3.67
5187 5451 4.589216 ATGTGTTGTTTGATCCTTGGTG 57.411 40.909 0.00 0.00 0.00 4.17
5188 5452 3.625853 TGTGTTGTTTGATCCTTGGTGA 58.374 40.909 0.00 0.00 0.00 4.02
5189 5453 3.631686 TGTGTTGTTTGATCCTTGGTGAG 59.368 43.478 0.00 0.00 0.00 3.51
5191 5455 1.909700 TGTTTGATCCTTGGTGAGGC 58.090 50.000 0.00 0.00 45.87 4.70
5192 5456 1.177401 GTTTGATCCTTGGTGAGGCC 58.823 55.000 0.00 0.00 45.87 5.19
5193 5457 0.322456 TTTGATCCTTGGTGAGGCCG 60.322 55.000 0.00 0.00 45.87 6.13
5194 5458 1.488705 TTGATCCTTGGTGAGGCCGT 61.489 55.000 0.00 0.00 45.87 5.68
5195 5459 1.450312 GATCCTTGGTGAGGCCGTG 60.450 63.158 0.00 0.00 45.87 4.94
5196 5460 2.185310 GATCCTTGGTGAGGCCGTGT 62.185 60.000 0.00 0.00 45.87 4.49
5197 5461 2.185310 ATCCTTGGTGAGGCCGTGTC 62.185 60.000 0.00 0.00 45.87 3.67
5198 5462 2.425592 CTTGGTGAGGCCGTGTCA 59.574 61.111 0.00 0.00 41.21 3.58
5199 5463 1.669115 CTTGGTGAGGCCGTGTCAG 60.669 63.158 0.00 0.00 41.21 3.51
5200 5464 2.383245 CTTGGTGAGGCCGTGTCAGT 62.383 60.000 0.00 0.00 41.21 3.41
5201 5465 2.048127 GGTGAGGCCGTGTCAGTC 60.048 66.667 0.00 0.00 0.00 3.51
5202 5466 2.574955 GGTGAGGCCGTGTCAGTCT 61.575 63.158 0.00 0.00 0.00 3.24
5203 5467 1.080434 GTGAGGCCGTGTCAGTCTC 60.080 63.158 0.00 0.00 0.00 3.36
5204 5468 2.179517 GAGGCCGTGTCAGTCTCG 59.820 66.667 0.00 0.00 0.00 4.04
5208 5472 3.039988 CCGTGTCAGTCTCGGTGT 58.960 61.111 0.58 0.00 44.86 4.16
5209 5473 1.371758 CCGTGTCAGTCTCGGTGTG 60.372 63.158 0.58 0.00 44.86 3.82
5210 5474 1.359117 CGTGTCAGTCTCGGTGTGT 59.641 57.895 0.00 0.00 0.00 3.72
5211 5475 0.934901 CGTGTCAGTCTCGGTGTGTG 60.935 60.000 0.00 0.00 0.00 3.82
5212 5476 0.384309 GTGTCAGTCTCGGTGTGTGA 59.616 55.000 0.00 0.00 0.00 3.58
5213 5477 0.384309 TGTCAGTCTCGGTGTGTGAC 59.616 55.000 0.00 0.00 40.57 3.67
5214 5478 0.660595 GTCAGTCTCGGTGTGTGACG 60.661 60.000 0.00 0.00 44.02 4.35
5215 5479 1.099295 TCAGTCTCGGTGTGTGACGT 61.099 55.000 0.00 0.00 44.02 4.34
5216 5480 0.589708 CAGTCTCGGTGTGTGACGTA 59.410 55.000 0.00 0.00 44.02 3.57
5217 5481 0.590195 AGTCTCGGTGTGTGACGTAC 59.410 55.000 0.00 0.00 44.02 3.67
5218 5482 0.590195 GTCTCGGTGTGTGACGTACT 59.410 55.000 0.00 0.00 32.03 2.73
5219 5483 1.800586 GTCTCGGTGTGTGACGTACTA 59.199 52.381 0.00 0.00 32.03 1.82
5220 5484 2.071540 TCTCGGTGTGTGACGTACTAG 58.928 52.381 0.00 0.00 0.00 2.57
5221 5485 0.518636 TCGGTGTGTGACGTACTAGC 59.481 55.000 0.00 0.00 0.00 3.42
5222 5486 0.239082 CGGTGTGTGACGTACTAGCA 59.761 55.000 0.00 0.00 0.00 3.49
5223 5487 1.728179 CGGTGTGTGACGTACTAGCAG 60.728 57.143 0.00 0.00 0.00 4.24
5224 5488 1.268899 GGTGTGTGACGTACTAGCAGT 59.731 52.381 0.00 0.00 0.00 4.40
5225 5489 2.316792 GTGTGTGACGTACTAGCAGTG 58.683 52.381 0.00 0.00 0.00 3.66
5226 5490 1.951602 TGTGTGACGTACTAGCAGTGT 59.048 47.619 0.00 0.00 0.00 3.55
5227 5491 2.287368 TGTGTGACGTACTAGCAGTGTG 60.287 50.000 0.00 0.00 0.00 3.82
5228 5492 1.335597 TGTGACGTACTAGCAGTGTGC 60.336 52.381 0.00 0.00 45.46 4.57
5241 5505 3.751621 GCAGTGTGCTTGCTATTAAGTG 58.248 45.455 0.00 0.00 40.96 3.16
5242 5506 3.189287 GCAGTGTGCTTGCTATTAAGTGT 59.811 43.478 0.00 0.00 40.96 3.55
5243 5507 4.715896 CAGTGTGCTTGCTATTAAGTGTG 58.284 43.478 0.00 0.00 0.00 3.82
5244 5508 4.452114 CAGTGTGCTTGCTATTAAGTGTGA 59.548 41.667 0.00 0.00 0.00 3.58
5245 5509 4.452455 AGTGTGCTTGCTATTAAGTGTGAC 59.548 41.667 0.00 0.00 0.00 3.67
5246 5510 4.452455 GTGTGCTTGCTATTAAGTGTGACT 59.548 41.667 0.00 0.00 0.00 3.41
5247 5511 5.637810 GTGTGCTTGCTATTAAGTGTGACTA 59.362 40.000 0.00 0.00 0.00 2.59
5248 5512 5.869344 TGTGCTTGCTATTAAGTGTGACTAG 59.131 40.000 0.00 0.00 0.00 2.57
5249 5513 5.869888 GTGCTTGCTATTAAGTGTGACTAGT 59.130 40.000 0.00 0.00 0.00 2.57
5250 5514 7.033791 GTGCTTGCTATTAAGTGTGACTAGTA 58.966 38.462 0.00 0.00 0.00 1.82
5251 5515 7.544566 GTGCTTGCTATTAAGTGTGACTAGTAA 59.455 37.037 0.00 0.00 0.00 2.24
5252 5516 7.759886 TGCTTGCTATTAAGTGTGACTAGTAAG 59.240 37.037 0.00 0.00 36.10 2.34
5253 5517 7.254151 GCTTGCTATTAAGTGTGACTAGTAAGC 60.254 40.741 13.42 13.42 44.69 3.09
5254 5518 7.165460 TGCTATTAAGTGTGACTAGTAAGCA 57.835 36.000 0.00 0.00 32.45 3.91
5255 5519 7.782049 TGCTATTAAGTGTGACTAGTAAGCAT 58.218 34.615 0.00 0.00 31.01 3.79
5256 5520 7.706607 TGCTATTAAGTGTGACTAGTAAGCATG 59.293 37.037 0.00 0.00 31.01 4.06
5257 5521 6.910536 ATTAAGTGTGACTAGTAAGCATGC 57.089 37.500 10.51 10.51 0.00 4.06
5258 5522 3.961480 AGTGTGACTAGTAAGCATGCA 57.039 42.857 21.98 0.00 0.00 3.96
5259 5523 3.589988 AGTGTGACTAGTAAGCATGCAC 58.410 45.455 21.98 10.48 0.00 4.57
5260 5524 2.345641 GTGTGACTAGTAAGCATGCACG 59.654 50.000 21.98 3.52 0.00 5.34
5261 5525 2.029380 TGTGACTAGTAAGCATGCACGT 60.029 45.455 21.98 7.14 0.00 4.49
5262 5526 2.345641 GTGACTAGTAAGCATGCACGTG 59.654 50.000 21.98 12.28 0.00 4.49
5263 5527 1.324736 GACTAGTAAGCATGCACGTGC 59.675 52.381 33.11 33.11 45.38 5.34
5281 5545 2.980586 TGCAACGCACGCATTATAATC 58.019 42.857 0.00 0.00 33.55 1.75
5282 5546 2.611751 TGCAACGCACGCATTATAATCT 59.388 40.909 0.00 0.00 33.55 2.40
5283 5547 2.966708 GCAACGCACGCATTATAATCTG 59.033 45.455 0.00 0.00 0.00 2.90
5284 5548 2.949714 ACGCACGCATTATAATCTGC 57.050 45.000 0.00 0.00 35.02 4.26
5285 5549 2.209273 ACGCACGCATTATAATCTGCA 58.791 42.857 10.76 0.00 38.30 4.41
5286 5550 2.611751 ACGCACGCATTATAATCTGCAA 59.388 40.909 10.76 0.00 38.30 4.08
5287 5551 3.250762 ACGCACGCATTATAATCTGCAAT 59.749 39.130 10.76 0.00 38.30 3.56
5288 5552 4.450757 ACGCACGCATTATAATCTGCAATA 59.549 37.500 10.76 0.00 38.30 1.90
5289 5553 5.049749 ACGCACGCATTATAATCTGCAATAA 60.050 36.000 10.76 0.00 38.30 1.40
5290 5554 5.850653 CGCACGCATTATAATCTGCAATAAA 59.149 36.000 10.76 0.00 38.30 1.40
5291 5555 6.359352 CGCACGCATTATAATCTGCAATAAAA 59.641 34.615 10.76 0.00 38.30 1.52
5292 5556 7.493313 GCACGCATTATAATCTGCAATAAAAC 58.507 34.615 10.76 0.00 38.30 2.43
5293 5557 7.167302 GCACGCATTATAATCTGCAATAAAACA 59.833 33.333 10.76 0.00 38.30 2.83
5294 5558 9.184062 CACGCATTATAATCTGCAATAAAACAT 57.816 29.630 10.76 0.00 38.30 2.71
5295 5559 9.398170 ACGCATTATAATCTGCAATAAAACATC 57.602 29.630 10.76 0.00 38.30 3.06
5296 5560 9.616634 CGCATTATAATCTGCAATAAAACATCT 57.383 29.630 10.76 0.00 38.30 2.90
5336 5600 7.473027 TCTCTTTTAGTGAGTTGTTTTACCG 57.527 36.000 0.00 0.00 33.59 4.02
5337 5601 7.267128 TCTCTTTTAGTGAGTTGTTTTACCGA 58.733 34.615 0.00 0.00 33.59 4.69
5338 5602 7.437267 TCTCTTTTAGTGAGTTGTTTTACCGAG 59.563 37.037 0.00 0.00 33.59 4.63
5339 5603 5.662211 TTTAGTGAGTTGTTTTACCGAGC 57.338 39.130 0.00 0.00 0.00 5.03
5340 5604 2.490991 AGTGAGTTGTTTTACCGAGCC 58.509 47.619 0.00 0.00 0.00 4.70
5341 5605 2.158871 AGTGAGTTGTTTTACCGAGCCA 60.159 45.455 0.00 0.00 0.00 4.75
5342 5606 2.812011 GTGAGTTGTTTTACCGAGCCAT 59.188 45.455 0.00 0.00 0.00 4.40
5343 5607 3.252458 GTGAGTTGTTTTACCGAGCCATT 59.748 43.478 0.00 0.00 0.00 3.16
5344 5608 3.886505 TGAGTTGTTTTACCGAGCCATTT 59.113 39.130 0.00 0.00 0.00 2.32
5345 5609 5.049267 GTGAGTTGTTTTACCGAGCCATTTA 60.049 40.000 0.00 0.00 0.00 1.40
5346 5610 5.531659 TGAGTTGTTTTACCGAGCCATTTAA 59.468 36.000 0.00 0.00 0.00 1.52
5347 5611 6.009115 AGTTGTTTTACCGAGCCATTTAAG 57.991 37.500 0.00 0.00 0.00 1.85
5348 5612 5.766174 AGTTGTTTTACCGAGCCATTTAAGA 59.234 36.000 0.00 0.00 0.00 2.10
5349 5613 6.263617 AGTTGTTTTACCGAGCCATTTAAGAA 59.736 34.615 0.00 0.00 0.00 2.52
5350 5614 6.636562 TGTTTTACCGAGCCATTTAAGAAA 57.363 33.333 0.00 0.00 0.00 2.52
5351 5615 7.222000 TGTTTTACCGAGCCATTTAAGAAAT 57.778 32.000 0.00 0.00 0.00 2.17
5352 5616 7.309920 TGTTTTACCGAGCCATTTAAGAAATC 58.690 34.615 0.00 0.00 0.00 2.17
5353 5617 5.728351 TTACCGAGCCATTTAAGAAATCG 57.272 39.130 0.00 0.00 0.00 3.34
5354 5618 3.869065 ACCGAGCCATTTAAGAAATCGA 58.131 40.909 0.00 0.00 0.00 3.59
5355 5619 4.258543 ACCGAGCCATTTAAGAAATCGAA 58.741 39.130 0.00 0.00 0.00 3.71
5356 5620 4.094442 ACCGAGCCATTTAAGAAATCGAAC 59.906 41.667 0.00 0.00 0.00 3.95
5357 5621 4.094294 CCGAGCCATTTAAGAAATCGAACA 59.906 41.667 0.00 0.00 0.00 3.18
5358 5622 5.022021 CGAGCCATTTAAGAAATCGAACAC 58.978 41.667 0.00 0.00 0.00 3.32
5359 5623 5.310720 AGCCATTTAAGAAATCGAACACC 57.689 39.130 0.00 0.00 0.00 4.16
5360 5624 4.764823 AGCCATTTAAGAAATCGAACACCA 59.235 37.500 0.00 0.00 0.00 4.17
5361 5625 5.418840 AGCCATTTAAGAAATCGAACACCAT 59.581 36.000 0.00 0.00 0.00 3.55
5362 5626 6.071391 AGCCATTTAAGAAATCGAACACCATT 60.071 34.615 0.00 0.00 0.00 3.16
5363 5627 6.034898 GCCATTTAAGAAATCGAACACCATTG 59.965 38.462 0.00 0.00 0.00 2.82
5364 5628 6.034898 CCATTTAAGAAATCGAACACCATTGC 59.965 38.462 0.00 0.00 0.00 3.56
5365 5629 5.697473 TTAAGAAATCGAACACCATTGCA 57.303 34.783 0.00 0.00 0.00 4.08
5366 5630 3.559238 AGAAATCGAACACCATTGCAC 57.441 42.857 0.00 0.00 0.00 4.57
5367 5631 2.095768 AGAAATCGAACACCATTGCACG 60.096 45.455 0.00 0.00 0.00 5.34
5368 5632 0.109781 AATCGAACACCATTGCACGC 60.110 50.000 0.00 0.00 0.00 5.34
5369 5633 1.922135 ATCGAACACCATTGCACGCC 61.922 55.000 0.00 0.00 0.00 5.68
5370 5634 2.902419 CGAACACCATTGCACGCCA 61.902 57.895 0.00 0.00 0.00 5.69
5371 5635 1.371635 GAACACCATTGCACGCCAC 60.372 57.895 0.00 0.00 0.00 5.01
5372 5636 2.069465 GAACACCATTGCACGCCACA 62.069 55.000 0.00 0.00 0.00 4.17
5373 5637 2.050168 CACCATTGCACGCCACAC 60.050 61.111 0.00 0.00 0.00 3.82
5374 5638 3.294493 ACCATTGCACGCCACACC 61.294 61.111 0.00 0.00 0.00 4.16
5375 5639 4.054825 CCATTGCACGCCACACCC 62.055 66.667 0.00 0.00 0.00 4.61
5376 5640 2.985282 CATTGCACGCCACACCCT 60.985 61.111 0.00 0.00 0.00 4.34
5377 5641 2.672996 ATTGCACGCCACACCCTC 60.673 61.111 0.00 0.00 0.00 4.30
5378 5642 3.196207 ATTGCACGCCACACCCTCT 62.196 57.895 0.00 0.00 0.00 3.69
5379 5643 3.825160 TTGCACGCCACACCCTCTC 62.825 63.158 0.00 0.00 0.00 3.20
5380 5644 4.008933 GCACGCCACACCCTCTCT 62.009 66.667 0.00 0.00 0.00 3.10
5381 5645 2.047844 CACGCCACACCCTCTCTG 60.048 66.667 0.00 0.00 0.00 3.35
5382 5646 2.203640 ACGCCACACCCTCTCTGA 60.204 61.111 0.00 0.00 0.00 3.27
5383 5647 2.279069 ACGCCACACCCTCTCTGAG 61.279 63.158 0.00 0.00 0.00 3.35
5384 5648 2.279069 CGCCACACCCTCTCTGAGT 61.279 63.158 4.32 0.00 0.00 3.41
5385 5649 1.594310 GCCACACCCTCTCTGAGTC 59.406 63.158 4.32 0.00 0.00 3.36
5386 5650 0.902516 GCCACACCCTCTCTGAGTCT 60.903 60.000 4.32 0.00 0.00 3.24
5387 5651 1.617263 GCCACACCCTCTCTGAGTCTA 60.617 57.143 4.32 0.00 0.00 2.59
5388 5652 2.374184 CCACACCCTCTCTGAGTCTAG 58.626 57.143 4.32 0.00 0.00 2.43
5389 5653 2.291282 CCACACCCTCTCTGAGTCTAGT 60.291 54.545 4.32 0.00 0.00 2.57
5390 5654 3.054287 CCACACCCTCTCTGAGTCTAGTA 60.054 52.174 4.32 0.00 0.00 1.82
5391 5655 4.567958 CCACACCCTCTCTGAGTCTAGTAA 60.568 50.000 4.32 0.00 0.00 2.24
5392 5656 5.010933 CACACCCTCTCTGAGTCTAGTAAA 58.989 45.833 4.32 0.00 0.00 2.01
5393 5657 5.654650 CACACCCTCTCTGAGTCTAGTAAAT 59.345 44.000 4.32 0.00 0.00 1.40
5394 5658 5.654650 ACACCCTCTCTGAGTCTAGTAAATG 59.345 44.000 4.32 0.00 0.00 2.32
5395 5659 5.654650 CACCCTCTCTGAGTCTAGTAAATGT 59.345 44.000 4.32 0.00 0.00 2.71
5396 5660 6.153680 CACCCTCTCTGAGTCTAGTAAATGTT 59.846 42.308 4.32 0.00 0.00 2.71
5397 5661 6.726764 ACCCTCTCTGAGTCTAGTAAATGTTT 59.273 38.462 4.32 0.00 0.00 2.83
5398 5662 7.038659 CCCTCTCTGAGTCTAGTAAATGTTTG 58.961 42.308 4.32 0.00 0.00 2.93
5399 5663 7.038659 CCTCTCTGAGTCTAGTAAATGTTTGG 58.961 42.308 4.32 0.00 0.00 3.28
5400 5664 6.398918 TCTCTGAGTCTAGTAAATGTTTGGC 58.601 40.000 4.32 0.00 0.00 4.52
5401 5665 5.488341 TCTGAGTCTAGTAAATGTTTGGCC 58.512 41.667 0.00 0.00 0.00 5.36
5402 5666 5.248477 TCTGAGTCTAGTAAATGTTTGGCCT 59.752 40.000 3.32 0.00 0.00 5.19
5403 5667 6.439375 TCTGAGTCTAGTAAATGTTTGGCCTA 59.561 38.462 3.32 0.00 0.00 3.93
5404 5668 7.125811 TCTGAGTCTAGTAAATGTTTGGCCTAT 59.874 37.037 3.32 0.00 0.00 2.57
5405 5669 7.630082 TGAGTCTAGTAAATGTTTGGCCTATT 58.370 34.615 3.32 0.00 0.00 1.73
5406 5670 8.107095 TGAGTCTAGTAAATGTTTGGCCTATTT 58.893 33.333 3.32 8.49 0.00 1.40
5407 5671 8.507524 AGTCTAGTAAATGTTTGGCCTATTTC 57.492 34.615 3.32 1.68 0.00 2.17
5408 5672 7.556635 AGTCTAGTAAATGTTTGGCCTATTTCC 59.443 37.037 3.32 0.00 0.00 3.13
5409 5673 7.556635 GTCTAGTAAATGTTTGGCCTATTTCCT 59.443 37.037 3.32 5.18 0.00 3.36
5410 5674 8.774183 TCTAGTAAATGTTTGGCCTATTTCCTA 58.226 33.333 3.32 6.01 0.00 2.94
5411 5675 9.574516 CTAGTAAATGTTTGGCCTATTTCCTAT 57.425 33.333 3.32 0.00 0.00 2.57
5412 5676 8.838649 AGTAAATGTTTGGCCTATTTCCTATT 57.161 30.769 3.32 0.00 0.00 1.73
5413 5677 9.930158 AGTAAATGTTTGGCCTATTTCCTATTA 57.070 29.630 3.32 0.00 0.00 0.98
5418 5682 8.602472 TGTTTGGCCTATTTCCTATTATTTGT 57.398 30.769 3.32 0.00 0.00 2.83
5419 5683 9.702253 TGTTTGGCCTATTTCCTATTATTTGTA 57.298 29.630 3.32 0.00 0.00 2.41
5475 5739 9.034800 ACTTTTGATAATAATTGTGGTCATGGT 57.965 29.630 0.00 0.00 0.00 3.55
5476 5740 9.304731 CTTTTGATAATAATTGTGGTCATGGTG 57.695 33.333 0.00 0.00 0.00 4.17
5477 5741 6.957920 TGATAATAATTGTGGTCATGGTGG 57.042 37.500 0.00 0.00 0.00 4.61
5478 5742 6.430864 TGATAATAATTGTGGTCATGGTGGT 58.569 36.000 0.00 0.00 0.00 4.16
5479 5743 6.545666 TGATAATAATTGTGGTCATGGTGGTC 59.454 38.462 0.00 0.00 0.00 4.02
5480 5744 2.978156 AATTGTGGTCATGGTGGTCT 57.022 45.000 0.00 0.00 0.00 3.85
5481 5745 2.978156 ATTGTGGTCATGGTGGTCTT 57.022 45.000 0.00 0.00 0.00 3.01
5482 5746 2.746279 TTGTGGTCATGGTGGTCTTT 57.254 45.000 0.00 0.00 0.00 2.52
5483 5747 2.270352 TGTGGTCATGGTGGTCTTTC 57.730 50.000 0.00 0.00 0.00 2.62
5484 5748 1.774254 TGTGGTCATGGTGGTCTTTCT 59.226 47.619 0.00 0.00 0.00 2.52
5485 5749 2.154462 GTGGTCATGGTGGTCTTTCTG 58.846 52.381 0.00 0.00 0.00 3.02
5486 5750 1.774254 TGGTCATGGTGGTCTTTCTGT 59.226 47.619 0.00 0.00 0.00 3.41
5487 5751 2.174639 TGGTCATGGTGGTCTTTCTGTT 59.825 45.455 0.00 0.00 0.00 3.16
5488 5752 2.814336 GGTCATGGTGGTCTTTCTGTTC 59.186 50.000 0.00 0.00 0.00 3.18
5489 5753 2.814336 GTCATGGTGGTCTTTCTGTTCC 59.186 50.000 0.00 0.00 0.00 3.62
5490 5754 2.441375 TCATGGTGGTCTTTCTGTTCCA 59.559 45.455 0.00 0.00 0.00 3.53
5491 5755 2.341846 TGGTGGTCTTTCTGTTCCAC 57.658 50.000 4.82 4.82 46.46 4.02
5493 5757 2.640316 GTGGTCTTTCTGTTCCACCT 57.360 50.000 0.00 0.00 42.90 4.00
5494 5758 2.932261 GTGGTCTTTCTGTTCCACCTT 58.068 47.619 0.00 0.00 42.90 3.50
5495 5759 4.081322 GTGGTCTTTCTGTTCCACCTTA 57.919 45.455 0.00 0.00 42.90 2.69
5496 5760 4.065789 GTGGTCTTTCTGTTCCACCTTAG 58.934 47.826 0.00 0.00 42.90 2.18
5497 5761 3.072476 TGGTCTTTCTGTTCCACCTTAGG 59.928 47.826 0.00 0.00 0.00 2.69
5498 5762 3.559384 GGTCTTTCTGTTCCACCTTAGGG 60.559 52.174 2.32 0.00 38.88 3.53
5500 5764 4.285260 GTCTTTCTGTTCCACCTTAGGGTA 59.715 45.833 2.32 0.00 45.41 3.69
5501 5765 5.045797 GTCTTTCTGTTCCACCTTAGGGTAT 60.046 44.000 2.32 0.00 45.41 2.73
5502 5766 5.189145 TCTTTCTGTTCCACCTTAGGGTATC 59.811 44.000 2.32 0.00 45.41 2.24
5503 5767 4.348020 TCTGTTCCACCTTAGGGTATCT 57.652 45.455 2.32 0.00 45.41 1.98
5504 5768 4.695606 TCTGTTCCACCTTAGGGTATCTT 58.304 43.478 2.32 0.00 45.41 2.40
5505 5769 5.098663 TCTGTTCCACCTTAGGGTATCTTT 58.901 41.667 2.32 0.00 45.41 2.52
5506 5770 5.045869 TCTGTTCCACCTTAGGGTATCTTTG 60.046 44.000 2.32 0.00 45.41 2.77
5507 5771 4.847512 TGTTCCACCTTAGGGTATCTTTGA 59.152 41.667 2.32 0.00 45.41 2.69
5508 5772 5.491078 TGTTCCACCTTAGGGTATCTTTGAT 59.509 40.000 2.32 0.00 45.41 2.57
5509 5773 5.888982 TCCACCTTAGGGTATCTTTGATC 57.111 43.478 2.32 0.00 45.41 2.92
5510 5774 4.658901 TCCACCTTAGGGTATCTTTGATCC 59.341 45.833 2.32 0.00 45.41 3.36
5511 5775 4.412199 CCACCTTAGGGTATCTTTGATCCA 59.588 45.833 2.32 0.00 45.41 3.41
5512 5776 5.455326 CCACCTTAGGGTATCTTTGATCCAG 60.455 48.000 2.32 0.00 45.41 3.86
5513 5777 5.366768 CACCTTAGGGTATCTTTGATCCAGA 59.633 44.000 2.32 0.00 45.41 3.86
5514 5778 5.970640 ACCTTAGGGTATCTTTGATCCAGAA 59.029 40.000 2.32 0.00 45.32 3.02
5515 5779 6.621514 ACCTTAGGGTATCTTTGATCCAGAAT 59.378 38.462 2.32 0.00 45.32 2.40
5516 5780 7.794683 ACCTTAGGGTATCTTTGATCCAGAATA 59.205 37.037 2.32 0.00 45.32 1.75
5517 5781 8.830741 CCTTAGGGTATCTTTGATCCAGAATAT 58.169 37.037 0.00 0.00 0.00 1.28
5521 5785 9.579932 AGGGTATCTTTGATCCAGAATATTTTC 57.420 33.333 0.00 0.00 0.00 2.29
5522 5786 9.354673 GGGTATCTTTGATCCAGAATATTTTCA 57.645 33.333 0.00 0.00 34.08 2.69
5541 5805 8.611654 ATTTTCATTGAAAATTCAGAGGGTTG 57.388 30.769 24.88 0.00 46.07 3.77
5542 5806 6.975196 TTCATTGAAAATTCAGAGGGTTGA 57.025 33.333 0.00 0.00 38.61 3.18
5543 5807 6.975196 TCATTGAAAATTCAGAGGGTTGAA 57.025 33.333 0.00 0.00 41.00 2.69
5544 5808 7.543359 TCATTGAAAATTCAGAGGGTTGAAT 57.457 32.000 0.00 0.00 46.81 2.57
5545 5809 7.605449 TCATTGAAAATTCAGAGGGTTGAATC 58.395 34.615 2.11 0.00 44.74 2.52
5546 5810 5.982890 TGAAAATTCAGAGGGTTGAATCC 57.017 39.130 2.11 0.00 44.74 3.01
5547 5811 5.392995 TGAAAATTCAGAGGGTTGAATCCA 58.607 37.500 0.00 0.04 44.74 3.41
5548 5812 6.018469 TGAAAATTCAGAGGGTTGAATCCAT 58.982 36.000 0.00 0.00 44.74 3.41
5549 5813 7.181361 TGAAAATTCAGAGGGTTGAATCCATA 58.819 34.615 0.00 0.00 44.74 2.74
5550 5814 7.840716 TGAAAATTCAGAGGGTTGAATCCATAT 59.159 33.333 0.00 0.00 44.74 1.78
5551 5815 7.592885 AAATTCAGAGGGTTGAATCCATATG 57.407 36.000 0.00 0.00 44.74 1.78
5552 5816 5.974156 TTCAGAGGGTTGAATCCATATGA 57.026 39.130 3.65 0.00 37.65 2.15
5553 5817 6.520021 TTCAGAGGGTTGAATCCATATGAT 57.480 37.500 3.65 0.00 38.83 2.45
5554 5818 6.520021 TCAGAGGGTTGAATCCATATGATT 57.480 37.500 3.65 2.33 46.46 2.57
5555 5819 6.914665 TCAGAGGGTTGAATCCATATGATTT 58.085 36.000 3.65 0.00 43.81 2.17
5556 5820 7.356680 TCAGAGGGTTGAATCCATATGATTTT 58.643 34.615 3.65 0.00 43.81 1.82
5557 5821 7.840716 TCAGAGGGTTGAATCCATATGATTTTT 59.159 33.333 3.65 0.00 43.81 1.94
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 7.365117 CCCTGATGAGGTTATCTCTTTACTTGT 60.365 40.741 0.00 0.00 42.86 3.16
1 2 6.989169 CCCTGATGAGGTTATCTCTTTACTTG 59.011 42.308 0.00 0.00 42.86 3.16
2 3 6.100424 CCCCTGATGAGGTTATCTCTTTACTT 59.900 42.308 0.00 0.00 42.86 2.24
3 4 5.604650 CCCCTGATGAGGTTATCTCTTTACT 59.395 44.000 0.00 0.00 42.86 2.24
4 5 5.743422 GCCCCTGATGAGGTTATCTCTTTAC 60.743 48.000 0.00 0.00 42.86 2.01
5 6 4.348168 GCCCCTGATGAGGTTATCTCTTTA 59.652 45.833 0.00 0.00 42.86 1.85
6 7 3.137360 GCCCCTGATGAGGTTATCTCTTT 59.863 47.826 0.00 0.00 42.86 2.52
7 8 2.708325 GCCCCTGATGAGGTTATCTCTT 59.292 50.000 0.00 0.00 42.86 2.85
8 9 2.334023 GCCCCTGATGAGGTTATCTCT 58.666 52.381 0.00 0.00 42.86 3.10
9 10 1.001406 CGCCCCTGATGAGGTTATCTC 59.999 57.143 0.00 0.00 42.74 2.75
10 11 1.051812 CGCCCCTGATGAGGTTATCT 58.948 55.000 0.00 0.00 37.73 1.98
11 12 0.759346 ACGCCCCTGATGAGGTTATC 59.241 55.000 0.00 0.00 37.73 1.75
12 13 1.213296 AACGCCCCTGATGAGGTTAT 58.787 50.000 0.00 0.00 37.73 1.89
13 14 1.868713 TAACGCCCCTGATGAGGTTA 58.131 50.000 0.00 0.00 37.73 2.85
14 15 1.141053 GATAACGCCCCTGATGAGGTT 59.859 52.381 0.00 0.00 37.73 3.50
15 16 0.759346 GATAACGCCCCTGATGAGGT 59.241 55.000 0.00 0.00 37.73 3.85
16 17 0.035458 GGATAACGCCCCTGATGAGG 59.965 60.000 0.00 0.00 39.42 3.86
17 18 0.758734 TGGATAACGCCCCTGATGAG 59.241 55.000 0.00 0.00 0.00 2.90
18 19 1.347707 GATGGATAACGCCCCTGATGA 59.652 52.381 0.00 0.00 0.00 2.92
19 20 1.611673 GGATGGATAACGCCCCTGATG 60.612 57.143 0.00 0.00 0.00 3.07
20 21 0.693049 GGATGGATAACGCCCCTGAT 59.307 55.000 0.00 0.00 0.00 2.90
21 22 0.692756 TGGATGGATAACGCCCCTGA 60.693 55.000 0.00 0.00 0.00 3.86
22 23 0.182537 TTGGATGGATAACGCCCCTG 59.817 55.000 0.00 0.00 0.00 4.45
23 24 0.923358 TTTGGATGGATAACGCCCCT 59.077 50.000 0.00 0.00 0.00 4.79
24 25 1.029681 GTTTGGATGGATAACGCCCC 58.970 55.000 0.00 0.00 0.00 5.80
25 26 1.404035 GTGTTTGGATGGATAACGCCC 59.596 52.381 0.00 0.00 0.00 6.13
26 27 2.354821 GAGTGTTTGGATGGATAACGCC 59.645 50.000 0.00 0.00 33.86 5.68
27 28 2.030457 CGAGTGTTTGGATGGATAACGC 59.970 50.000 0.00 0.00 33.63 4.84
28 29 3.517602 TCGAGTGTTTGGATGGATAACG 58.482 45.455 0.00 0.00 0.00 3.18
29 30 4.332819 CCTTCGAGTGTTTGGATGGATAAC 59.667 45.833 0.00 0.00 0.00 1.89
30 31 4.224147 TCCTTCGAGTGTTTGGATGGATAA 59.776 41.667 0.00 0.00 31.38 1.75
31 32 3.772572 TCCTTCGAGTGTTTGGATGGATA 59.227 43.478 0.00 0.00 31.38 2.59
32 33 2.571653 TCCTTCGAGTGTTTGGATGGAT 59.428 45.455 0.00 0.00 31.38 3.41
33 34 1.974957 TCCTTCGAGTGTTTGGATGGA 59.025 47.619 0.00 0.00 33.22 3.41
34 35 2.028112 TCTCCTTCGAGTGTTTGGATGG 60.028 50.000 0.00 0.00 37.40 3.51
35 36 3.319137 TCTCCTTCGAGTGTTTGGATG 57.681 47.619 0.00 0.00 37.40 3.51
36 37 4.351874 TTTCTCCTTCGAGTGTTTGGAT 57.648 40.909 0.00 0.00 37.40 3.41
37 38 3.830744 TTTCTCCTTCGAGTGTTTGGA 57.169 42.857 0.00 0.00 37.40 3.53
38 39 3.003378 GGTTTTCTCCTTCGAGTGTTTGG 59.997 47.826 0.00 0.00 37.40 3.28
39 40 3.877508 AGGTTTTCTCCTTCGAGTGTTTG 59.122 43.478 0.00 0.00 37.40 2.93
40 41 4.127907 GAGGTTTTCTCCTTCGAGTGTTT 58.872 43.478 0.00 0.00 38.02 2.83
41 42 3.729966 GAGGTTTTCTCCTTCGAGTGTT 58.270 45.455 0.00 0.00 38.02 3.32
42 43 2.288273 CGAGGTTTTCTCCTTCGAGTGT 60.288 50.000 0.00 0.00 39.30 3.55
43 44 2.329379 CGAGGTTTTCTCCTTCGAGTG 58.671 52.381 0.00 0.00 39.30 3.51
44 45 1.336980 GCGAGGTTTTCTCCTTCGAGT 60.337 52.381 0.00 0.00 39.30 4.18
45 46 1.067495 AGCGAGGTTTTCTCCTTCGAG 60.067 52.381 0.00 0.00 39.30 4.04
46 47 0.966920 AGCGAGGTTTTCTCCTTCGA 59.033 50.000 0.00 0.00 39.30 3.71
47 48 2.649331 TAGCGAGGTTTTCTCCTTCG 57.351 50.000 0.00 0.00 39.30 3.79
48 49 3.001414 GGTTAGCGAGGTTTTCTCCTTC 58.999 50.000 0.00 0.00 39.30 3.46
49 50 2.370849 TGGTTAGCGAGGTTTTCTCCTT 59.629 45.455 0.00 0.00 39.30 3.36
50 51 1.975680 TGGTTAGCGAGGTTTTCTCCT 59.024 47.619 0.00 0.00 39.30 3.69
51 52 2.467566 TGGTTAGCGAGGTTTTCTCC 57.532 50.000 0.00 0.00 39.30 3.71
52 53 2.096013 GCATGGTTAGCGAGGTTTTCTC 59.904 50.000 0.00 0.00 39.10 2.87
53 54 2.084546 GCATGGTTAGCGAGGTTTTCT 58.915 47.619 0.00 0.00 0.00 2.52
54 55 2.084546 AGCATGGTTAGCGAGGTTTTC 58.915 47.619 0.00 0.00 37.01 2.29
55 56 2.200373 AGCATGGTTAGCGAGGTTTT 57.800 45.000 0.00 0.00 37.01 2.43
56 57 2.236395 ACTAGCATGGTTAGCGAGGTTT 59.764 45.455 1.12 0.00 38.77 3.27
57 58 1.831736 ACTAGCATGGTTAGCGAGGTT 59.168 47.619 1.12 0.00 38.77 3.50
58 59 1.486211 ACTAGCATGGTTAGCGAGGT 58.514 50.000 1.12 0.00 38.77 3.85
59 60 2.159099 TGAACTAGCATGGTTAGCGAGG 60.159 50.000 1.12 0.00 41.06 4.63
60 61 3.165058 TGAACTAGCATGGTTAGCGAG 57.835 47.619 1.12 0.00 41.06 5.03
61 62 3.132111 TCATGAACTAGCATGGTTAGCGA 59.868 43.478 1.12 0.00 41.06 4.93
62 63 3.457234 TCATGAACTAGCATGGTTAGCG 58.543 45.455 1.12 0.00 41.06 4.26
63 64 3.249559 GCTCATGAACTAGCATGGTTAGC 59.750 47.826 1.12 8.03 41.06 3.09
64 65 4.701765 AGCTCATGAACTAGCATGGTTAG 58.298 43.478 1.12 1.32 41.06 2.34
65 66 4.760530 AGCTCATGAACTAGCATGGTTA 57.239 40.909 1.12 0.00 41.06 2.85
66 67 3.641434 AGCTCATGAACTAGCATGGTT 57.359 42.857 1.12 0.00 44.88 3.67
67 68 3.708631 AGTAGCTCATGAACTAGCATGGT 59.291 43.478 6.08 1.62 44.44 3.55
68 69 4.305769 GAGTAGCTCATGAACTAGCATGG 58.694 47.826 6.08 3.67 44.44 3.66
69 70 3.980134 CGAGTAGCTCATGAACTAGCATG 59.020 47.826 6.08 4.45 45.41 4.06
70 71 3.885901 TCGAGTAGCTCATGAACTAGCAT 59.114 43.478 6.08 0.00 41.32 3.79
71 72 3.279434 TCGAGTAGCTCATGAACTAGCA 58.721 45.455 6.08 0.00 41.32 3.49
72 73 3.972950 TCGAGTAGCTCATGAACTAGC 57.027 47.619 6.08 1.26 39.08 3.42
74 75 9.894783 GTAATTAATCGAGTAGCTCATGAACTA 57.105 33.333 1.58 1.58 0.00 2.24
75 76 7.591795 CGTAATTAATCGAGTAGCTCATGAACT 59.408 37.037 3.72 3.72 0.00 3.01
76 77 7.617528 GCGTAATTAATCGAGTAGCTCATGAAC 60.618 40.741 0.00 0.00 0.00 3.18
77 78 6.362551 GCGTAATTAATCGAGTAGCTCATGAA 59.637 38.462 0.00 0.00 0.00 2.57
78 79 5.856986 GCGTAATTAATCGAGTAGCTCATGA 59.143 40.000 0.00 0.00 0.00 3.07
79 80 5.859114 AGCGTAATTAATCGAGTAGCTCATG 59.141 40.000 0.00 0.00 0.00 3.07
80 81 6.015027 AGCGTAATTAATCGAGTAGCTCAT 57.985 37.500 0.00 0.00 0.00 2.90
81 82 5.434352 AGCGTAATTAATCGAGTAGCTCA 57.566 39.130 0.00 0.00 0.00 4.26
82 83 5.691815 AGAGCGTAATTAATCGAGTAGCTC 58.308 41.667 18.04 18.04 46.09 4.09
83 84 5.470777 AGAGAGCGTAATTAATCGAGTAGCT 59.529 40.000 3.61 3.61 34.92 3.32
84 85 5.691815 AGAGAGCGTAATTAATCGAGTAGC 58.308 41.667 1.05 0.00 0.00 3.58
87 88 8.781196 TGTAATAGAGAGCGTAATTAATCGAGT 58.219 33.333 1.05 0.00 0.00 4.18
88 89 9.608617 TTGTAATAGAGAGCGTAATTAATCGAG 57.391 33.333 1.05 0.00 0.00 4.04
95 96 9.935241 ATGATCATTGTAATAGAGAGCGTAATT 57.065 29.630 1.18 0.00 0.00 1.40
99 100 8.580720 ACTTATGATCATTGTAATAGAGAGCGT 58.419 33.333 14.65 0.00 0.00 5.07
100 101 8.858186 CACTTATGATCATTGTAATAGAGAGCG 58.142 37.037 14.65 0.00 0.00 5.03
101 102 9.920133 TCACTTATGATCATTGTAATAGAGAGC 57.080 33.333 14.65 0.00 0.00 4.09
111 112 9.645128 TTTTCCCATATCACTTATGATCATTGT 57.355 29.630 14.65 10.56 42.15 2.71
136 137 9.733556 TGCCCGTTACTTATGATCATTATATTT 57.266 29.630 14.65 0.00 0.00 1.40
137 138 9.905713 ATGCCCGTTACTTATGATCATTATATT 57.094 29.630 14.65 0.00 0.00 1.28
138 139 9.330063 CATGCCCGTTACTTATGATCATTATAT 57.670 33.333 14.65 0.27 0.00 0.86
139 140 8.318412 ACATGCCCGTTACTTATGATCATTATA 58.682 33.333 14.65 1.48 0.00 0.98
140 141 7.168219 ACATGCCCGTTACTTATGATCATTAT 58.832 34.615 14.65 2.47 0.00 1.28
141 142 6.530120 ACATGCCCGTTACTTATGATCATTA 58.470 36.000 14.65 3.53 0.00 1.90
142 143 5.376625 ACATGCCCGTTACTTATGATCATT 58.623 37.500 14.65 0.00 0.00 2.57
143 144 4.973168 ACATGCCCGTTACTTATGATCAT 58.027 39.130 13.81 13.81 0.00 2.45
144 145 4.415881 ACATGCCCGTTACTTATGATCA 57.584 40.909 0.00 0.00 0.00 2.92
145 146 7.064253 GGTTATACATGCCCGTTACTTATGATC 59.936 40.741 0.00 0.00 0.00 2.92
146 147 6.877322 GGTTATACATGCCCGTTACTTATGAT 59.123 38.462 0.00 0.00 0.00 2.45
147 148 6.042322 AGGTTATACATGCCCGTTACTTATGA 59.958 38.462 0.00 0.00 0.00 2.15
148 149 6.228258 AGGTTATACATGCCCGTTACTTATG 58.772 40.000 0.00 0.00 0.00 1.90
149 150 6.429521 AGGTTATACATGCCCGTTACTTAT 57.570 37.500 0.00 0.00 0.00 1.73
150 151 5.874897 AGGTTATACATGCCCGTTACTTA 57.125 39.130 0.00 0.00 0.00 2.24
151 152 4.765813 AGGTTATACATGCCCGTTACTT 57.234 40.909 0.00 0.00 0.00 2.24
152 153 4.897670 ACTAGGTTATACATGCCCGTTACT 59.102 41.667 0.00 0.00 0.00 2.24
153 154 5.205759 ACTAGGTTATACATGCCCGTTAC 57.794 43.478 0.00 0.00 0.00 2.50
154 155 5.874897 AACTAGGTTATACATGCCCGTTA 57.125 39.130 0.00 0.00 0.00 3.18
155 156 4.765813 AACTAGGTTATACATGCCCGTT 57.234 40.909 0.00 0.00 0.00 4.44
156 157 4.765813 AAACTAGGTTATACATGCCCGT 57.234 40.909 0.00 0.00 0.00 5.28
202 203 5.338300 GGAAAATAAAGTGTACCCCCTCGTA 60.338 44.000 0.00 0.00 0.00 3.43
204 205 3.943381 GGAAAATAAAGTGTACCCCCTCG 59.057 47.826 0.00 0.00 0.00 4.63
210 211 5.220796 GCTCATCGGGAAAATAAAGTGTACC 60.221 44.000 0.00 0.00 0.00 3.34
211 212 5.220796 GGCTCATCGGGAAAATAAAGTGTAC 60.221 44.000 0.00 0.00 0.00 2.90
220 221 3.662759 TTTAGGGCTCATCGGGAAAAT 57.337 42.857 0.00 0.00 0.00 1.82
225 226 1.486726 AGACTTTTAGGGCTCATCGGG 59.513 52.381 0.00 0.00 0.00 5.14
226 227 2.168521 TGAGACTTTTAGGGCTCATCGG 59.831 50.000 0.00 0.00 32.85 4.18
227 228 3.526931 TGAGACTTTTAGGGCTCATCG 57.473 47.619 0.00 0.00 32.85 3.84
233 234 2.422093 CCCAGGATGAGACTTTTAGGGC 60.422 54.545 0.00 0.00 39.69 5.19
290 291 5.292101 CCAGGATTCTCACGAGTAAACAATC 59.708 44.000 0.00 0.00 0.00 2.67
292 293 4.039973 ACCAGGATTCTCACGAGTAAACAA 59.960 41.667 0.00 0.00 0.00 2.83
300 301 0.041238 AGGGACCAGGATTCTCACGA 59.959 55.000 0.00 0.00 0.00 4.35
323 325 0.545309 AAGCCCAGGCACACTCTCTA 60.545 55.000 12.03 0.00 44.88 2.43
678 737 0.721718 CGACTTGCATTCCCGAGAAC 59.278 55.000 0.00 0.00 33.97 3.01
726 785 7.349412 ACCCACTATTTCTCAGATACTGTAC 57.651 40.000 0.00 0.00 32.61 2.90
747 806 2.039418 GAATTCTTGCCCCCAATACCC 58.961 52.381 0.00 0.00 0.00 3.69
761 820 7.072581 CCCCTAAAACCTAGTATCTGGAATTCT 59.927 40.741 5.23 0.00 0.00 2.40
779 845 4.108287 ACCCAAACAGATAACCCCCTAAAA 59.892 41.667 0.00 0.00 0.00 1.52
780 846 3.663632 ACCCAAACAGATAACCCCCTAAA 59.336 43.478 0.00 0.00 0.00 1.85
781 847 3.270812 ACCCAAACAGATAACCCCCTAA 58.729 45.455 0.00 0.00 0.00 2.69
783 849 1.768265 ACCCAAACAGATAACCCCCT 58.232 50.000 0.00 0.00 0.00 4.79
784 850 2.453521 GAACCCAAACAGATAACCCCC 58.546 52.381 0.00 0.00 0.00 5.40
785 851 2.453521 GGAACCCAAACAGATAACCCC 58.546 52.381 0.00 0.00 0.00 4.95
827 893 7.893124 ATAATTCTTGATTGATCTGGCAAGT 57.107 32.000 16.16 5.83 38.95 3.16
860 926 5.896678 ACATTATGCATAGCCAAACCCTTAA 59.103 36.000 6.50 0.00 0.00 1.85
985 1051 5.375417 TGTTGCATACTGAAATTCCTGTG 57.625 39.130 0.00 0.00 0.00 3.66
1052 1118 3.328637 AGTCAACCCCGGTAAGTTAATGT 59.671 43.478 0.00 0.00 0.00 2.71
1055 1121 2.550639 GCAGTCAACCCCGGTAAGTTAA 60.551 50.000 0.00 0.00 0.00 2.01
1079 1145 1.079127 CGCCATCTTTGAGACCGGT 60.079 57.895 6.92 6.92 0.00 5.28
1234 1301 9.423061 GGATTGTAAAAGAAATGTAGCAACAAT 57.577 29.630 0.00 0.00 39.58 2.71
1270 1337 7.418483 CCCCAAAAGTCATCTAAAGGAACAAAA 60.418 37.037 0.00 0.00 0.00 2.44
1410 1478 7.928873 AGGATAAGGGAATAGAGTTCACAAAA 58.071 34.615 0.00 0.00 0.00 2.44
1446 1514 5.311265 TCATTCATGGATGGCTGATAGAAC 58.689 41.667 14.21 0.00 0.00 3.01
1535 1603 7.014134 CACCTGCCTATATATAGATCAGTCCTG 59.986 44.444 24.53 17.53 33.23 3.86
1597 1665 5.552870 AGGTGATAAACAACTGAGTCTGT 57.447 39.130 0.00 0.00 45.73 3.41
1642 1710 2.119801 CTGGTAATCCAAGCAGCAGT 57.880 50.000 0.00 0.00 43.81 4.40
2003 2103 2.287644 CGTGCAAGTGTCATGTTTCAGA 59.712 45.455 0.00 0.00 0.00 3.27
2079 2179 2.818432 TCCCGAAGATAAGTAGATCGCC 59.182 50.000 0.00 0.00 32.46 5.54
2255 2357 2.798976 TGCATTCAGCTGGACAAAAC 57.201 45.000 15.13 0.00 45.94 2.43
2413 2516 3.058224 GGGTTGATTTTCTCGTCAAGGTG 60.058 47.826 0.00 0.00 35.22 4.00
2436 2539 5.469479 ACATAAAAGAAACATTTGGAGGCG 58.531 37.500 0.00 0.00 0.00 5.52
2683 2787 1.829849 CTCTGAGGATTGACAGGAGCA 59.170 52.381 0.00 0.00 35.20 4.26
2689 2793 2.759535 CTCTGCTCTCTGAGGATTGACA 59.240 50.000 4.59 0.00 35.42 3.58
2690 2794 3.023119 TCTCTGCTCTCTGAGGATTGAC 58.977 50.000 4.59 0.00 38.40 3.18
2691 2795 3.289836 CTCTCTGCTCTCTGAGGATTGA 58.710 50.000 4.59 0.00 38.40 2.57
2756 2860 0.694771 AGCAGGAATTGGAGCTGTCA 59.305 50.000 0.00 0.00 35.72 3.58
2757 2861 2.284190 GTAGCAGGAATTGGAGCTGTC 58.716 52.381 0.00 0.00 37.94 3.51
2824 2928 1.757682 TTGAAACTCTGGGCGTTTGT 58.242 45.000 0.00 0.00 34.94 2.83
2861 2965 1.219393 GCTTCTGGCGCTCTAACCT 59.781 57.895 7.64 0.00 0.00 3.50
2885 2993 4.740334 GCAAGGGTGTTCAACAACATTCAT 60.740 41.667 8.12 0.00 37.76 2.57
3008 3126 5.518128 CGATTGATACTGACAACTTGGAGAG 59.482 44.000 0.00 0.00 0.00 3.20
3009 3127 5.410924 CGATTGATACTGACAACTTGGAGA 58.589 41.667 0.00 0.00 0.00 3.71
3026 3144 1.802069 TGCGTTCATGTTCCGATTGA 58.198 45.000 0.00 0.00 0.00 2.57
3197 3370 1.514553 GCCATCTGGAAAAGCTGCC 59.485 57.895 0.00 0.00 37.39 4.85
3223 3396 6.616893 GCAGTATGTTTGCATGTCATGTTTTG 60.617 38.462 14.26 2.70 41.17 2.44
3365 3565 1.153369 GACTAGCAGCGCCATTCCA 60.153 57.895 2.29 0.00 0.00 3.53
3429 3629 1.758280 TCCCATTGGCAGCATTCATTC 59.242 47.619 0.00 0.00 0.00 2.67
3430 3630 1.868713 TCCCATTGGCAGCATTCATT 58.131 45.000 0.00 0.00 0.00 2.57
3431 3631 1.868713 TTCCCATTGGCAGCATTCAT 58.131 45.000 0.00 0.00 0.00 2.57
3432 3632 1.868713 ATTCCCATTGGCAGCATTCA 58.131 45.000 0.00 0.00 0.00 2.57
3450 3663 1.272807 AGCCTGGCTTTCATTGCAAT 58.727 45.000 17.22 5.99 33.89 3.56
3492 3705 7.870509 ATGCAGTAACAACATGATCATAAGT 57.129 32.000 8.15 4.52 0.00 2.24
3638 3851 6.986817 CCTGTACAAACTCCATTACTCCATAG 59.013 42.308 0.00 0.00 0.00 2.23
3759 3972 6.556974 TCTGATGAATCCAGTGAAGAGATT 57.443 37.500 0.00 0.00 33.01 2.40
3821 4062 8.980481 TTCAGACTAAAAGAGAAGGTGAAAAT 57.020 30.769 0.00 0.00 0.00 1.82
3826 4067 8.383318 TGATTTTCAGACTAAAAGAGAAGGTG 57.617 34.615 0.00 0.00 32.20 4.00
4032 4273 0.179048 TGCACACTAAGCTGCACACT 60.179 50.000 1.02 0.00 38.49 3.55
4050 4291 3.307059 GGCTAGGTCCAGCATATTAGGTG 60.307 52.174 13.25 0.00 43.67 4.00
4213 4456 1.582389 AGAGATTCAGCCTGCTCCTT 58.418 50.000 0.00 0.00 0.00 3.36
4260 4503 7.502895 TGTTTAACCATACTTTAGCCAAAGACA 59.497 33.333 11.75 0.00 43.32 3.41
4333 4588 1.745489 GGATGAACACCGCCCTCAC 60.745 63.158 0.00 0.00 0.00 3.51
4354 4612 6.913673 TGAAACAAAGGCAATAAGACGTAAAC 59.086 34.615 0.00 0.00 0.00 2.01
4360 4619 5.705609 TCCTGAAACAAAGGCAATAAGAC 57.294 39.130 0.00 0.00 34.56 3.01
4387 4647 0.179134 AGCTTGACATACTCGTCCGC 60.179 55.000 0.00 0.00 34.88 5.54
4696 4956 8.483218 TGTAATAAACATGAACAAAATTGCGTG 58.517 29.630 0.00 0.00 31.43 5.34
4800 5061 6.701841 GCACATCATTCTTTACTCCGAGATAA 59.298 38.462 1.33 0.00 0.00 1.75
4820 5081 9.784531 AAAAATAGCTGAGTATATGTAGCACAT 57.215 29.630 0.00 6.93 42.35 3.21
4976 5240 2.203153 ACACGGAGCCACACCAAC 60.203 61.111 0.00 0.00 0.00 3.77
4993 5257 3.494254 AGGGGAACACCAACGCCA 61.494 61.111 0.00 0.00 42.91 5.69
4995 5259 2.203294 ACAGGGGAACACCAACGC 60.203 61.111 0.00 0.00 42.91 4.84
5090 5354 3.136443 CAGGGGGATAGAACACAATAGCA 59.864 47.826 0.00 0.00 0.00 3.49
5124 5388 6.581171 AAATTCTTTCATTGGGAGACTGAC 57.419 37.500 0.00 0.00 0.00 3.51
5126 5390 6.647895 CCAAAAATTCTTTCATTGGGAGACTG 59.352 38.462 0.00 0.00 37.47 3.51
5127 5391 6.327365 ACCAAAAATTCTTTCATTGGGAGACT 59.673 34.615 7.65 0.00 43.77 3.24
5164 5428 4.746115 CACCAAGGATCAAACAACACATTG 59.254 41.667 0.00 0.00 41.98 2.82
5165 5429 4.648762 TCACCAAGGATCAAACAACACATT 59.351 37.500 0.00 0.00 0.00 2.71
5166 5430 4.214310 TCACCAAGGATCAAACAACACAT 58.786 39.130 0.00 0.00 0.00 3.21
5167 5431 3.625853 TCACCAAGGATCAAACAACACA 58.374 40.909 0.00 0.00 0.00 3.72
5168 5432 4.228912 CTCACCAAGGATCAAACAACAC 57.771 45.455 0.00 0.00 0.00 3.32
5181 5445 1.669115 CTGACACGGCCTCACCAAG 60.669 63.158 0.00 0.00 39.03 3.61
5182 5446 2.377628 GACTGACACGGCCTCACCAA 62.378 60.000 0.00 0.00 39.03 3.67
5183 5447 2.842462 ACTGACACGGCCTCACCA 60.842 61.111 0.00 0.00 39.03 4.17
5184 5448 2.048127 GACTGACACGGCCTCACC 60.048 66.667 0.00 0.00 0.00 4.02
5185 5449 1.080434 GAGACTGACACGGCCTCAC 60.080 63.158 0.00 0.00 0.00 3.51
5186 5450 2.626780 CGAGACTGACACGGCCTCA 61.627 63.158 0.00 0.00 0.00 3.86
5187 5451 2.179517 CGAGACTGACACGGCCTC 59.820 66.667 0.00 0.00 0.00 4.70
5188 5452 3.374402 CCGAGACTGACACGGCCT 61.374 66.667 0.00 0.00 44.49 5.19
5192 5456 0.934901 CACACACCGAGACTGACACG 60.935 60.000 0.00 0.00 0.00 4.49
5193 5457 0.384309 TCACACACCGAGACTGACAC 59.616 55.000 0.00 0.00 0.00 3.67
5194 5458 0.384309 GTCACACACCGAGACTGACA 59.616 55.000 0.00 0.00 32.99 3.58
5195 5459 0.660595 CGTCACACACCGAGACTGAC 60.661 60.000 0.00 0.00 0.00 3.51
5196 5460 1.099295 ACGTCACACACCGAGACTGA 61.099 55.000 0.00 0.00 0.00 3.41
5197 5461 0.589708 TACGTCACACACCGAGACTG 59.410 55.000 0.00 0.00 0.00 3.51
5198 5462 0.590195 GTACGTCACACACCGAGACT 59.410 55.000 0.00 0.00 0.00 3.24
5199 5463 0.590195 AGTACGTCACACACCGAGAC 59.410 55.000 0.00 0.00 0.00 3.36
5200 5464 2.071540 CTAGTACGTCACACACCGAGA 58.928 52.381 0.00 0.00 0.00 4.04
5201 5465 1.465354 GCTAGTACGTCACACACCGAG 60.465 57.143 0.00 0.00 0.00 4.63
5202 5466 0.518636 GCTAGTACGTCACACACCGA 59.481 55.000 0.00 0.00 0.00 4.69
5203 5467 0.239082 TGCTAGTACGTCACACACCG 59.761 55.000 0.00 0.00 0.00 4.94
5204 5468 1.268899 ACTGCTAGTACGTCACACACC 59.731 52.381 0.00 0.00 0.00 4.16
5205 5469 2.287427 ACACTGCTAGTACGTCACACAC 60.287 50.000 0.00 0.00 0.00 3.82
5206 5470 1.951602 ACACTGCTAGTACGTCACACA 59.048 47.619 0.00 0.00 0.00 3.72
5207 5471 2.316792 CACACTGCTAGTACGTCACAC 58.683 52.381 0.00 0.00 0.00 3.82
5208 5472 1.335597 GCACACTGCTAGTACGTCACA 60.336 52.381 0.00 0.00 40.96 3.58
5209 5473 1.337821 GCACACTGCTAGTACGTCAC 58.662 55.000 0.00 0.00 40.96 3.67
5210 5474 3.786809 GCACACTGCTAGTACGTCA 57.213 52.632 0.00 0.00 40.96 4.35
5220 5484 3.189287 ACACTTAATAGCAAGCACACTGC 59.811 43.478 0.00 0.00 45.46 4.40
5221 5485 4.452114 TCACACTTAATAGCAAGCACACTG 59.548 41.667 0.00 0.00 0.00 3.66
5222 5486 4.452455 GTCACACTTAATAGCAAGCACACT 59.548 41.667 0.00 0.00 0.00 3.55
5223 5487 4.452455 AGTCACACTTAATAGCAAGCACAC 59.548 41.667 0.00 0.00 0.00 3.82
5224 5488 4.641396 AGTCACACTTAATAGCAAGCACA 58.359 39.130 0.00 0.00 0.00 4.57
5225 5489 5.869888 ACTAGTCACACTTAATAGCAAGCAC 59.130 40.000 0.00 0.00 0.00 4.40
5226 5490 6.037786 ACTAGTCACACTTAATAGCAAGCA 57.962 37.500 0.00 0.00 0.00 3.91
5227 5491 7.254151 GCTTACTAGTCACACTTAATAGCAAGC 60.254 40.741 0.00 0.00 36.33 4.01
5228 5492 7.759886 TGCTTACTAGTCACACTTAATAGCAAG 59.240 37.037 0.00 0.00 30.90 4.01
5229 5493 7.608153 TGCTTACTAGTCACACTTAATAGCAA 58.392 34.615 0.00 0.00 30.90 3.91
5230 5494 7.165460 TGCTTACTAGTCACACTTAATAGCA 57.835 36.000 0.00 0.00 31.15 3.49
5231 5495 7.306866 GCATGCTTACTAGTCACACTTAATAGC 60.307 40.741 11.37 0.00 0.00 2.97
5232 5496 7.706607 TGCATGCTTACTAGTCACACTTAATAG 59.293 37.037 20.33 0.00 0.00 1.73
5233 5497 7.491372 GTGCATGCTTACTAGTCACACTTAATA 59.509 37.037 20.33 0.00 0.00 0.98
5234 5498 6.313905 GTGCATGCTTACTAGTCACACTTAAT 59.686 38.462 20.33 0.00 0.00 1.40
5235 5499 5.637810 GTGCATGCTTACTAGTCACACTTAA 59.362 40.000 20.33 0.00 0.00 1.85
5236 5500 5.168569 GTGCATGCTTACTAGTCACACTTA 58.831 41.667 20.33 0.00 0.00 2.24
5237 5501 3.997021 GTGCATGCTTACTAGTCACACTT 59.003 43.478 20.33 0.00 0.00 3.16
5238 5502 3.589988 GTGCATGCTTACTAGTCACACT 58.410 45.455 20.33 0.00 0.00 3.55
5239 5503 2.345641 CGTGCATGCTTACTAGTCACAC 59.654 50.000 20.33 2.71 0.00 3.82
5240 5504 2.029380 ACGTGCATGCTTACTAGTCACA 60.029 45.455 20.33 0.00 0.00 3.58
5241 5505 2.345641 CACGTGCATGCTTACTAGTCAC 59.654 50.000 20.33 4.04 0.00 3.67
5242 5506 2.606108 CACGTGCATGCTTACTAGTCA 58.394 47.619 20.33 0.00 0.00 3.41
5243 5507 1.324736 GCACGTGCATGCTTACTAGTC 59.675 52.381 34.52 0.00 42.62 2.59
5244 5508 1.359848 GCACGTGCATGCTTACTAGT 58.640 50.000 34.52 0.00 42.62 2.57
5262 5526 2.966708 CAGATTATAATGCGTGCGTTGC 59.033 45.455 9.48 0.00 0.00 4.17
5263 5527 2.966708 GCAGATTATAATGCGTGCGTTG 59.033 45.455 9.48 0.00 31.87 4.10
5264 5528 2.611751 TGCAGATTATAATGCGTGCGTT 59.388 40.909 1.78 4.53 45.54 4.84
5265 5529 2.209273 TGCAGATTATAATGCGTGCGT 58.791 42.857 1.78 0.00 45.54 5.24
5266 5530 2.947754 TGCAGATTATAATGCGTGCG 57.052 45.000 1.78 0.00 45.54 5.34
5267 5531 7.167302 TGTTTTATTGCAGATTATAATGCGTGC 59.833 33.333 1.78 9.44 45.54 5.34
5268 5532 8.559222 TGTTTTATTGCAGATTATAATGCGTG 57.441 30.769 1.78 0.00 45.54 5.34
5269 5533 9.398170 GATGTTTTATTGCAGATTATAATGCGT 57.602 29.630 1.78 0.00 45.54 5.24
5270 5534 9.616634 AGATGTTTTATTGCAGATTATAATGCG 57.383 29.630 1.78 0.00 45.54 4.73
5310 5574 8.392612 CGGTAAAACAACTCACTAAAAGAGAAA 58.607 33.333 0.00 0.00 36.91 2.52
5311 5575 7.765360 TCGGTAAAACAACTCACTAAAAGAGAA 59.235 33.333 0.00 0.00 36.91 2.87
5312 5576 7.267128 TCGGTAAAACAACTCACTAAAAGAGA 58.733 34.615 0.00 0.00 36.91 3.10
5313 5577 7.473027 TCGGTAAAACAACTCACTAAAAGAG 57.527 36.000 0.00 0.00 39.04 2.85
5314 5578 6.018507 GCTCGGTAAAACAACTCACTAAAAGA 60.019 38.462 0.00 0.00 0.00 2.52
5315 5579 6.134061 GCTCGGTAAAACAACTCACTAAAAG 58.866 40.000 0.00 0.00 0.00 2.27
5316 5580 5.007921 GGCTCGGTAAAACAACTCACTAAAA 59.992 40.000 0.00 0.00 0.00 1.52
5317 5581 4.512571 GGCTCGGTAAAACAACTCACTAAA 59.487 41.667 0.00 0.00 0.00 1.85
5318 5582 4.060205 GGCTCGGTAAAACAACTCACTAA 58.940 43.478 0.00 0.00 0.00 2.24
5319 5583 3.069872 TGGCTCGGTAAAACAACTCACTA 59.930 43.478 0.00 0.00 0.00 2.74
5320 5584 2.158871 TGGCTCGGTAAAACAACTCACT 60.159 45.455 0.00 0.00 0.00 3.41
5321 5585 2.215196 TGGCTCGGTAAAACAACTCAC 58.785 47.619 0.00 0.00 0.00 3.51
5322 5586 2.623878 TGGCTCGGTAAAACAACTCA 57.376 45.000 0.00 0.00 0.00 3.41
5323 5587 4.499037 AAATGGCTCGGTAAAACAACTC 57.501 40.909 0.00 0.00 0.00 3.01
5324 5588 5.766174 TCTTAAATGGCTCGGTAAAACAACT 59.234 36.000 0.00 0.00 0.00 3.16
5325 5589 6.004408 TCTTAAATGGCTCGGTAAAACAAC 57.996 37.500 0.00 0.00 0.00 3.32
5326 5590 6.636562 TTCTTAAATGGCTCGGTAAAACAA 57.363 33.333 0.00 0.00 0.00 2.83
5327 5591 6.636562 TTTCTTAAATGGCTCGGTAAAACA 57.363 33.333 0.00 0.00 0.00 2.83
5328 5592 6.468000 CGATTTCTTAAATGGCTCGGTAAAAC 59.532 38.462 0.00 0.00 0.00 2.43
5329 5593 6.372103 TCGATTTCTTAAATGGCTCGGTAAAA 59.628 34.615 0.00 0.00 0.00 1.52
5330 5594 5.875910 TCGATTTCTTAAATGGCTCGGTAAA 59.124 36.000 0.00 0.00 0.00 2.01
5331 5595 5.421277 TCGATTTCTTAAATGGCTCGGTAA 58.579 37.500 0.00 0.00 0.00 2.85
5332 5596 5.013568 TCGATTTCTTAAATGGCTCGGTA 57.986 39.130 0.00 0.00 0.00 4.02
5333 5597 3.869065 TCGATTTCTTAAATGGCTCGGT 58.131 40.909 0.00 0.00 0.00 4.69
5334 5598 4.094294 TGTTCGATTTCTTAAATGGCTCGG 59.906 41.667 0.00 0.00 0.00 4.63
5335 5599 5.022021 GTGTTCGATTTCTTAAATGGCTCG 58.978 41.667 0.00 0.00 0.00 5.03
5336 5600 5.106317 TGGTGTTCGATTTCTTAAATGGCTC 60.106 40.000 0.00 0.00 0.00 4.70
5337 5601 4.764823 TGGTGTTCGATTTCTTAAATGGCT 59.235 37.500 0.00 0.00 0.00 4.75
5338 5602 5.054390 TGGTGTTCGATTTCTTAAATGGC 57.946 39.130 0.00 0.00 0.00 4.40
5339 5603 6.034898 GCAATGGTGTTCGATTTCTTAAATGG 59.965 38.462 0.00 0.00 0.00 3.16
5340 5604 6.585702 TGCAATGGTGTTCGATTTCTTAAATG 59.414 34.615 0.00 0.00 0.00 2.32
5341 5605 6.586082 GTGCAATGGTGTTCGATTTCTTAAAT 59.414 34.615 0.00 0.00 0.00 1.40
5342 5606 5.918011 GTGCAATGGTGTTCGATTTCTTAAA 59.082 36.000 0.00 0.00 0.00 1.52
5343 5607 5.457140 GTGCAATGGTGTTCGATTTCTTAA 58.543 37.500 0.00 0.00 0.00 1.85
5344 5608 4.377943 CGTGCAATGGTGTTCGATTTCTTA 60.378 41.667 0.00 0.00 0.00 2.10
5345 5609 3.609175 CGTGCAATGGTGTTCGATTTCTT 60.609 43.478 0.00 0.00 0.00 2.52
5346 5610 2.095768 CGTGCAATGGTGTTCGATTTCT 60.096 45.455 0.00 0.00 0.00 2.52
5347 5611 2.241722 CGTGCAATGGTGTTCGATTTC 58.758 47.619 0.00 0.00 0.00 2.17
5348 5612 1.665735 GCGTGCAATGGTGTTCGATTT 60.666 47.619 0.00 0.00 0.00 2.17
5349 5613 0.109781 GCGTGCAATGGTGTTCGATT 60.110 50.000 0.00 0.00 0.00 3.34
5350 5614 1.501741 GCGTGCAATGGTGTTCGAT 59.498 52.632 0.00 0.00 0.00 3.59
5351 5615 2.612567 GGCGTGCAATGGTGTTCGA 61.613 57.895 0.00 0.00 0.00 3.71
5352 5616 2.126888 GGCGTGCAATGGTGTTCG 60.127 61.111 0.00 0.00 0.00 3.95
5353 5617 1.371635 GTGGCGTGCAATGGTGTTC 60.372 57.895 0.00 0.00 0.00 3.18
5354 5618 2.124060 TGTGGCGTGCAATGGTGTT 61.124 52.632 0.00 0.00 0.00 3.32
5355 5619 2.518112 TGTGGCGTGCAATGGTGT 60.518 55.556 0.00 0.00 0.00 4.16
5356 5620 2.050168 GTGTGGCGTGCAATGGTG 60.050 61.111 0.00 0.00 0.00 4.17
5357 5621 3.294493 GGTGTGGCGTGCAATGGT 61.294 61.111 0.00 0.00 0.00 3.55
5358 5622 4.054825 GGGTGTGGCGTGCAATGG 62.055 66.667 0.00 0.00 0.00 3.16
5359 5623 2.981560 GAGGGTGTGGCGTGCAATG 61.982 63.158 0.00 0.00 0.00 2.82
5360 5624 2.672996 GAGGGTGTGGCGTGCAAT 60.673 61.111 0.00 0.00 0.00 3.56
5361 5625 3.825160 GAGAGGGTGTGGCGTGCAA 62.825 63.158 0.00 0.00 0.00 4.08
5362 5626 4.314440 GAGAGGGTGTGGCGTGCA 62.314 66.667 0.00 0.00 0.00 4.57
5363 5627 4.008933 AGAGAGGGTGTGGCGTGC 62.009 66.667 0.00 0.00 0.00 5.34
5364 5628 2.047844 CAGAGAGGGTGTGGCGTG 60.048 66.667 0.00 0.00 0.00 5.34
5365 5629 2.203640 TCAGAGAGGGTGTGGCGT 60.204 61.111 0.00 0.00 0.00 5.68
5366 5630 2.219325 GACTCAGAGAGGGTGTGGCG 62.219 65.000 3.79 0.00 33.35 5.69
5367 5631 0.902516 AGACTCAGAGAGGGTGTGGC 60.903 60.000 3.79 0.00 33.35 5.01
5368 5632 2.291282 ACTAGACTCAGAGAGGGTGTGG 60.291 54.545 3.79 0.00 33.35 4.17
5369 5633 3.080300 ACTAGACTCAGAGAGGGTGTG 57.920 52.381 3.79 0.00 33.35 3.82
5370 5634 4.931027 TTACTAGACTCAGAGAGGGTGT 57.069 45.455 3.79 0.00 33.35 4.16
5371 5635 5.654650 ACATTTACTAGACTCAGAGAGGGTG 59.345 44.000 3.79 0.00 33.35 4.61
5372 5636 5.833340 ACATTTACTAGACTCAGAGAGGGT 58.167 41.667 3.79 0.38 33.35 4.34
5373 5637 6.783708 AACATTTACTAGACTCAGAGAGGG 57.216 41.667 3.79 0.00 33.35 4.30
5374 5638 7.038659 CCAAACATTTACTAGACTCAGAGAGG 58.961 42.308 3.79 0.00 33.35 3.69
5375 5639 6.533367 GCCAAACATTTACTAGACTCAGAGAG 59.467 42.308 3.79 0.00 35.52 3.20
5376 5640 6.398918 GCCAAACATTTACTAGACTCAGAGA 58.601 40.000 3.79 0.00 0.00 3.10
5377 5641 5.582665 GGCCAAACATTTACTAGACTCAGAG 59.417 44.000 0.00 0.00 0.00 3.35
5378 5642 5.248477 AGGCCAAACATTTACTAGACTCAGA 59.752 40.000 5.01 0.00 0.00 3.27
5379 5643 5.491982 AGGCCAAACATTTACTAGACTCAG 58.508 41.667 5.01 0.00 0.00 3.35
5380 5644 5.499004 AGGCCAAACATTTACTAGACTCA 57.501 39.130 5.01 0.00 0.00 3.41
5381 5645 8.507524 AAATAGGCCAAACATTTACTAGACTC 57.492 34.615 5.01 0.00 0.00 3.36
5382 5646 7.556635 GGAAATAGGCCAAACATTTACTAGACT 59.443 37.037 5.01 0.00 0.00 3.24
5383 5647 7.556635 AGGAAATAGGCCAAACATTTACTAGAC 59.443 37.037 5.01 0.00 32.29 2.59
5384 5648 7.639378 AGGAAATAGGCCAAACATTTACTAGA 58.361 34.615 5.01 0.00 32.29 2.43
5385 5649 7.881775 AGGAAATAGGCCAAACATTTACTAG 57.118 36.000 5.01 0.00 32.29 2.57
5386 5650 9.930158 AATAGGAAATAGGCCAAACATTTACTA 57.070 29.630 18.67 18.67 38.69 1.82
5387 5651 8.838649 AATAGGAAATAGGCCAAACATTTACT 57.161 30.769 16.47 16.47 36.85 2.24
5392 5656 9.212593 ACAAATAATAGGAAATAGGCCAAACAT 57.787 29.630 5.01 0.00 0.00 2.71
5393 5657 8.602472 ACAAATAATAGGAAATAGGCCAAACA 57.398 30.769 5.01 0.00 0.00 2.83
5449 5713 9.034800 ACCATGACCACAATTATTATCAAAAGT 57.965 29.630 0.00 0.00 0.00 2.66
5450 5714 9.304731 CACCATGACCACAATTATTATCAAAAG 57.695 33.333 0.00 0.00 0.00 2.27
5451 5715 8.256605 CCACCATGACCACAATTATTATCAAAA 58.743 33.333 0.00 0.00 0.00 2.44
5452 5716 7.398618 ACCACCATGACCACAATTATTATCAAA 59.601 33.333 0.00 0.00 0.00 2.69
5453 5717 6.894654 ACCACCATGACCACAATTATTATCAA 59.105 34.615 0.00 0.00 0.00 2.57
5454 5718 6.430864 ACCACCATGACCACAATTATTATCA 58.569 36.000 0.00 0.00 0.00 2.15
5455 5719 6.772716 AGACCACCATGACCACAATTATTATC 59.227 38.462 0.00 0.00 0.00 1.75
5456 5720 6.672593 AGACCACCATGACCACAATTATTAT 58.327 36.000 0.00 0.00 0.00 1.28
5457 5721 6.073447 AGACCACCATGACCACAATTATTA 57.927 37.500 0.00 0.00 0.00 0.98
5458 5722 4.934356 AGACCACCATGACCACAATTATT 58.066 39.130 0.00 0.00 0.00 1.40
5459 5723 4.591321 AGACCACCATGACCACAATTAT 57.409 40.909 0.00 0.00 0.00 1.28
5460 5724 4.380843 AAGACCACCATGACCACAATTA 57.619 40.909 0.00 0.00 0.00 1.40
5461 5725 2.978156 AGACCACCATGACCACAATT 57.022 45.000 0.00 0.00 0.00 2.32
5462 5726 2.978156 AAGACCACCATGACCACAAT 57.022 45.000 0.00 0.00 0.00 2.71
5463 5727 2.174639 AGAAAGACCACCATGACCACAA 59.825 45.455 0.00 0.00 0.00 3.33
5464 5728 1.774254 AGAAAGACCACCATGACCACA 59.226 47.619 0.00 0.00 0.00 4.17
5465 5729 2.154462 CAGAAAGACCACCATGACCAC 58.846 52.381 0.00 0.00 0.00 4.16
5466 5730 1.774254 ACAGAAAGACCACCATGACCA 59.226 47.619 0.00 0.00 0.00 4.02
5467 5731 2.568623 ACAGAAAGACCACCATGACC 57.431 50.000 0.00 0.00 0.00 4.02
5468 5732 2.814336 GGAACAGAAAGACCACCATGAC 59.186 50.000 0.00 0.00 0.00 3.06
5469 5733 2.441375 TGGAACAGAAAGACCACCATGA 59.559 45.455 0.00 0.00 0.00 3.07
5470 5734 2.554032 GTGGAACAGAAAGACCACCATG 59.446 50.000 0.00 0.00 44.59 3.66
5471 5735 2.863809 GTGGAACAGAAAGACCACCAT 58.136 47.619 0.00 0.00 44.59 3.55
5472 5736 2.341846 GTGGAACAGAAAGACCACCA 57.658 50.000 0.00 0.00 44.59 4.17
5475 5739 3.072476 CCTAAGGTGGAACAGAAAGACCA 59.928 47.826 0.00 0.00 41.80 4.02
5476 5740 3.559384 CCCTAAGGTGGAACAGAAAGACC 60.559 52.174 0.00 0.00 41.80 3.85
5477 5741 3.676093 CCCTAAGGTGGAACAGAAAGAC 58.324 50.000 0.00 0.00 41.80 3.01
5491 5755 6.500589 TTCTGGATCAAAGATACCCTAAGG 57.499 41.667 0.00 0.00 40.04 2.69
5495 5759 9.579932 GAAAATATTCTGGATCAAAGATACCCT 57.420 33.333 0.00 0.00 32.57 4.34
5496 5760 9.354673 TGAAAATATTCTGGATCAAAGATACCC 57.645 33.333 0.00 0.00 36.48 3.69
5517 5781 7.790027 TCAACCCTCTGAATTTTCAATGAAAA 58.210 30.769 21.46 21.46 44.04 2.29
5518 5782 7.358770 TCAACCCTCTGAATTTTCAATGAAA 57.641 32.000 4.03 4.03 36.64 2.69
5519 5783 6.975196 TCAACCCTCTGAATTTTCAATGAA 57.025 33.333 0.00 0.00 36.64 2.57
5520 5784 6.975196 TTCAACCCTCTGAATTTTCAATGA 57.025 33.333 0.00 0.00 36.64 2.57
5521 5785 6.815142 GGATTCAACCCTCTGAATTTTCAATG 59.185 38.462 0.71 0.00 44.29 2.82
5522 5786 6.497954 TGGATTCAACCCTCTGAATTTTCAAT 59.502 34.615 0.71 0.00 44.29 2.57
5523 5787 5.837979 TGGATTCAACCCTCTGAATTTTCAA 59.162 36.000 0.71 0.00 44.29 2.69
5524 5788 5.392995 TGGATTCAACCCTCTGAATTTTCA 58.607 37.500 0.71 0.00 44.29 2.69
5525 5789 5.982890 TGGATTCAACCCTCTGAATTTTC 57.017 39.130 0.71 0.00 44.29 2.29
5526 5790 7.840716 TCATATGGATTCAACCCTCTGAATTTT 59.159 33.333 2.13 0.00 44.29 1.82
5527 5791 7.356680 TCATATGGATTCAACCCTCTGAATTT 58.643 34.615 2.13 0.00 44.29 1.82
5528 5792 6.914665 TCATATGGATTCAACCCTCTGAATT 58.085 36.000 2.13 0.00 44.29 2.17
5529 5793 6.520021 TCATATGGATTCAACCCTCTGAAT 57.480 37.500 2.13 0.00 46.38 2.57
5530 5794 5.974156 TCATATGGATTCAACCCTCTGAA 57.026 39.130 2.13 0.00 39.56 3.02
5531 5795 6.520021 AATCATATGGATTCAACCCTCTGA 57.480 37.500 2.13 0.00 42.62 3.27
5532 5796 7.592885 AAAATCATATGGATTCAACCCTCTG 57.407 36.000 2.13 0.00 45.46 3.35


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.