Multiple sequence alignment - TraesCS4B01G079000

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G079000 chr4B 100.000 2868 0 0 1 2868 76567134 76564267 0.000000e+00 5297.0
1 TraesCS4B01G079000 chr4B 93.900 541 32 1 1 541 190570902 190570363 0.000000e+00 815.0
2 TraesCS4B01G079000 chr4A 86.814 1403 65 42 625 1976 544396619 544397952 0.000000e+00 1456.0
3 TraesCS4B01G079000 chr4A 86.165 824 51 15 1989 2767 544398086 544398891 0.000000e+00 832.0
4 TraesCS4B01G079000 chr4D 93.351 752 23 8 1103 1854 52215125 52215849 0.000000e+00 1086.0
5 TraesCS4B01G079000 chr4D 90.476 399 18 11 2281 2665 52215849 52216241 2.550000e-140 508.0
6 TraesCS4B01G079000 chr4D 88.804 393 14 7 701 1075 52214754 52215134 3.370000e-124 455.0
7 TraesCS4B01G079000 chr3B 93.794 564 33 1 1 564 244977848 244977287 0.000000e+00 846.0
8 TraesCS4B01G079000 chr3B 94.096 542 31 1 1 541 307223485 307224026 0.000000e+00 822.0
9 TraesCS4B01G079000 chr7B 94.096 542 31 1 1 541 17353290 17353831 0.000000e+00 822.0
10 TraesCS4B01G079000 chr7B 94.096 542 31 1 1 541 215970317 215970858 0.000000e+00 822.0
11 TraesCS4B01G079000 chr6B 94.085 541 32 0 1 541 611704941 611705481 0.000000e+00 822.0
12 TraesCS4B01G079000 chr3D 94.107 543 28 3 1 541 614469500 614468960 0.000000e+00 822.0
13 TraesCS4B01G079000 chr1B 94.085 541 32 0 1 541 433645590 433645050 0.000000e+00 822.0
14 TraesCS4B01G079000 chr1B 94.096 542 29 2 1 541 635152594 635152055 0.000000e+00 821.0
15 TraesCS4B01G079000 chr2D 96.970 33 1 0 1653 1685 132703416 132703384 3.990000e-04 56.5
16 TraesCS4B01G079000 chr2A 96.970 33 1 0 1653 1685 140364837 140364805 3.990000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G079000 chr4B 76564267 76567134 2867 True 5297 5297 100.0000 1 2868 1 chr4B.!!$R1 2867
1 TraesCS4B01G079000 chr4B 190570363 190570902 539 True 815 815 93.9000 1 541 1 chr4B.!!$R2 540
2 TraesCS4B01G079000 chr4A 544396619 544398891 2272 False 1144 1456 86.4895 625 2767 2 chr4A.!!$F1 2142
3 TraesCS4B01G079000 chr4D 52214754 52216241 1487 False 683 1086 90.8770 701 2665 3 chr4D.!!$F1 1964
4 TraesCS4B01G079000 chr3B 244977287 244977848 561 True 846 846 93.7940 1 564 1 chr3B.!!$R1 563
5 TraesCS4B01G079000 chr3B 307223485 307224026 541 False 822 822 94.0960 1 541 1 chr3B.!!$F1 540
6 TraesCS4B01G079000 chr7B 17353290 17353831 541 False 822 822 94.0960 1 541 1 chr7B.!!$F1 540
7 TraesCS4B01G079000 chr7B 215970317 215970858 541 False 822 822 94.0960 1 541 1 chr7B.!!$F2 540
8 TraesCS4B01G079000 chr6B 611704941 611705481 540 False 822 822 94.0850 1 541 1 chr6B.!!$F1 540
9 TraesCS4B01G079000 chr3D 614468960 614469500 540 True 822 822 94.1070 1 541 1 chr3D.!!$R1 540
10 TraesCS4B01G079000 chr1B 433645050 433645590 540 True 822 822 94.0850 1 541 1 chr1B.!!$R1 540
11 TraesCS4B01G079000 chr1B 635152055 635152594 539 True 821 821 94.0960 1 541 1 chr1B.!!$R2 540

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
688 692 0.172803 CCGGGTAGAGAACAAGTCCG 59.827 60.0 0.0 0.0 36.23 4.79 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2564 2774 0.170561 TCCGCTGTCTACTTCTTCGC 59.829 55.0 0.0 0.0 0.0 4.7 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
80 81 2.664185 CATCGGCGGCATCTGGAG 60.664 66.667 10.53 0.00 0.00 3.86
97 98 0.537188 GAGGATGGTGGATCGTGTGT 59.463 55.000 0.00 0.00 30.87 3.72
183 186 2.257691 CAGATCTGGAGCTTGATGGG 57.742 55.000 15.38 0.00 0.00 4.00
214 217 3.969250 TTGCCCCGGTCTGATTCGC 62.969 63.158 0.00 0.00 0.00 4.70
239 242 4.508461 ACGGTAATGGTTTTACCTTTGC 57.492 40.909 11.58 5.85 41.66 3.68
386 389 3.270877 GTGTTGGTGTCAAGTTCAGAGT 58.729 45.455 0.00 0.00 32.92 3.24
451 454 3.721035 CTTTGTGCAAAGGCTAGCTTTT 58.279 40.909 18.29 18.29 42.96 2.27
472 475 2.796304 TGCTGTCTTTTCAGTTTTGCG 58.204 42.857 0.00 0.00 37.70 4.85
484 487 1.202557 AGTTTTGCGAGGTCGGTTACA 60.203 47.619 0.89 0.00 40.23 2.41
565 568 8.483307 ACGAAGTTGAAAGTACACTCTTTAAA 57.517 30.769 0.00 0.00 37.78 1.52
566 569 8.601476 ACGAAGTTGAAAGTACACTCTTTAAAG 58.399 33.333 9.04 9.04 37.78 1.85
567 570 8.814235 CGAAGTTGAAAGTACACTCTTTAAAGA 58.186 33.333 16.85 16.85 37.70 2.52
586 589 9.527157 TTTAAAGAGTGGTTGATTATTGATCCA 57.473 29.630 0.00 0.00 33.60 3.41
587 590 9.527157 TTAAAGAGTGGTTGATTATTGATCCAA 57.473 29.630 0.00 0.00 33.60 3.53
588 591 7.636150 AAGAGTGGTTGATTATTGATCCAAG 57.364 36.000 0.00 0.00 33.60 3.61
589 592 6.725364 AGAGTGGTTGATTATTGATCCAAGT 58.275 36.000 0.00 0.00 33.60 3.16
590 593 7.177878 AGAGTGGTTGATTATTGATCCAAGTT 58.822 34.615 0.00 0.00 33.60 2.66
591 594 7.337942 AGAGTGGTTGATTATTGATCCAAGTTC 59.662 37.037 0.00 0.00 33.60 3.01
592 595 6.378280 AGTGGTTGATTATTGATCCAAGTTCC 59.622 38.462 0.00 0.00 33.60 3.62
593 596 6.152661 GTGGTTGATTATTGATCCAAGTTCCA 59.847 38.462 0.00 0.00 33.60 3.53
594 597 6.896860 TGGTTGATTATTGATCCAAGTTCCAT 59.103 34.615 0.00 0.00 33.60 3.41
595 598 7.399765 TGGTTGATTATTGATCCAAGTTCCATT 59.600 33.333 0.00 0.00 33.60 3.16
596 599 7.922811 GGTTGATTATTGATCCAAGTTCCATTC 59.077 37.037 0.00 0.00 33.60 2.67
597 600 8.689972 GTTGATTATTGATCCAAGTTCCATTCT 58.310 33.333 0.00 0.00 33.60 2.40
598 601 8.455903 TGATTATTGATCCAAGTTCCATTCTC 57.544 34.615 0.00 0.00 33.60 2.87
599 602 8.277197 TGATTATTGATCCAAGTTCCATTCTCT 58.723 33.333 0.00 0.00 33.60 3.10
600 603 8.688747 ATTATTGATCCAAGTTCCATTCTCTC 57.311 34.615 0.00 0.00 0.00 3.20
601 604 5.503634 TTGATCCAAGTTCCATTCTCTCA 57.496 39.130 0.00 0.00 0.00 3.27
602 605 5.503634 TGATCCAAGTTCCATTCTCTCAA 57.496 39.130 0.00 0.00 0.00 3.02
603 606 5.879763 TGATCCAAGTTCCATTCTCTCAAA 58.120 37.500 0.00 0.00 0.00 2.69
604 607 6.306199 TGATCCAAGTTCCATTCTCTCAAAA 58.694 36.000 0.00 0.00 0.00 2.44
605 608 6.777091 TGATCCAAGTTCCATTCTCTCAAAAA 59.223 34.615 0.00 0.00 0.00 1.94
656 660 6.910536 ATGACCGTGAATCTTATCAAGTTC 57.089 37.500 0.00 0.00 0.00 3.01
670 674 2.143925 CAAGTTCTCCTTTCCACGACC 58.856 52.381 0.00 0.00 0.00 4.79
674 678 2.524887 TCCTTTCCACGACCGGGT 60.525 61.111 6.32 0.00 0.00 5.28
688 692 0.172803 CCGGGTAGAGAACAAGTCCG 59.827 60.000 0.00 0.00 36.23 4.79
741 753 2.500098 TCTTATCAAGTTCTGGACCCCG 59.500 50.000 0.00 0.00 0.00 5.73
745 757 1.071699 TCAAGTTCTGGACCCCGAAAG 59.928 52.381 0.00 0.00 0.00 2.62
759 771 1.009078 CGAAAGCAGCCGAATCATCA 58.991 50.000 0.00 0.00 0.00 3.07
848 869 6.166279 TCTAGTTGACCAAATGCTCTTACAG 58.834 40.000 0.00 0.00 0.00 2.74
896 917 0.466555 TCCCAAAGAACCAACCACCG 60.467 55.000 0.00 0.00 0.00 4.94
998 1041 4.779733 TCGCTCACCCCTCTCCCC 62.780 72.222 0.00 0.00 0.00 4.81
1063 1110 1.276138 CCACTGCTCCATCACACACTA 59.724 52.381 0.00 0.00 0.00 2.74
1064 1111 2.614779 CACTGCTCCATCACACACTAG 58.385 52.381 0.00 0.00 0.00 2.57
1066 1113 0.250234 TGCTCCATCACACACTAGCC 59.750 55.000 0.00 0.00 0.00 3.93
1067 1114 0.250234 GCTCCATCACACACTAGCCA 59.750 55.000 0.00 0.00 0.00 4.75
1068 1115 1.741732 GCTCCATCACACACTAGCCAG 60.742 57.143 0.00 0.00 0.00 4.85
1069 1116 1.552337 CTCCATCACACACTAGCCAGT 59.448 52.381 0.00 0.00 34.42 4.00
1070 1117 2.760650 CTCCATCACACACTAGCCAGTA 59.239 50.000 0.00 0.00 32.21 2.74
1071 1118 2.760650 TCCATCACACACTAGCCAGTAG 59.239 50.000 0.00 0.00 32.21 2.57
1072 1119 2.544685 CATCACACACTAGCCAGTAGC 58.455 52.381 0.00 0.00 44.25 3.58
1083 1130 0.753867 GCCAGTAGCTACTTCCCTCC 59.246 60.000 23.94 5.25 38.99 4.30
1084 1131 1.415200 CCAGTAGCTACTTCCCTCCC 58.585 60.000 23.94 0.00 33.46 4.30
1085 1132 1.062810 CCAGTAGCTACTTCCCTCCCT 60.063 57.143 23.94 0.00 33.46 4.20
1086 1133 2.312390 CAGTAGCTACTTCCCTCCCTC 58.688 57.143 23.94 0.00 33.46 4.30
1087 1134 1.133730 AGTAGCTACTTCCCTCCCTCG 60.134 57.143 20.95 0.00 31.13 4.63
1088 1135 0.467659 TAGCTACTTCCCTCCCTCGC 60.468 60.000 0.00 0.00 0.00 5.03
1089 1136 2.798364 GCTACTTCCCTCCCTCGCC 61.798 68.421 0.00 0.00 0.00 5.54
1090 1137 1.075896 CTACTTCCCTCCCTCGCCT 60.076 63.158 0.00 0.00 0.00 5.52
1091 1138 1.076192 TACTTCCCTCCCTCGCCTC 60.076 63.158 0.00 0.00 0.00 4.70
1092 1139 1.870941 TACTTCCCTCCCTCGCCTCA 61.871 60.000 0.00 0.00 0.00 3.86
1093 1140 2.683933 TTCCCTCCCTCGCCTCAC 60.684 66.667 0.00 0.00 0.00 3.51
1094 1141 3.239627 TTCCCTCCCTCGCCTCACT 62.240 63.158 0.00 0.00 0.00 3.41
1095 1142 2.685380 CCCTCCCTCGCCTCACTT 60.685 66.667 0.00 0.00 0.00 3.16
1096 1143 2.726351 CCCTCCCTCGCCTCACTTC 61.726 68.421 0.00 0.00 0.00 3.01
1097 1144 2.726351 CCTCCCTCGCCTCACTTCC 61.726 68.421 0.00 0.00 0.00 3.46
1098 1145 2.683933 TCCCTCGCCTCACTTCCC 60.684 66.667 0.00 0.00 0.00 3.97
1099 1146 4.148825 CCCTCGCCTCACTTCCCG 62.149 72.222 0.00 0.00 0.00 5.14
1100 1147 3.068691 CCTCGCCTCACTTCCCGA 61.069 66.667 0.00 0.00 0.00 5.14
1101 1148 2.646175 CCTCGCCTCACTTCCCGAA 61.646 63.158 0.00 0.00 0.00 4.30
1102 1149 1.446272 CTCGCCTCACTTCCCGAAC 60.446 63.158 0.00 0.00 0.00 3.95
1103 1150 2.434359 CGCCTCACTTCCCGAACC 60.434 66.667 0.00 0.00 0.00 3.62
1104 1151 2.747686 GCCTCACTTCCCGAACCA 59.252 61.111 0.00 0.00 0.00 3.67
1105 1152 1.671379 GCCTCACTTCCCGAACCAC 60.671 63.158 0.00 0.00 0.00 4.16
1129 1181 1.207329 CTAACTACTGCCCACCACTCC 59.793 57.143 0.00 0.00 0.00 3.85
1145 1197 1.954362 CTCCTCCTTCGTGCCAGAGG 61.954 65.000 0.00 0.00 46.11 3.69
1156 1208 0.322816 TGCCAGAGGGAATCAGCAAC 60.323 55.000 0.00 0.00 36.75 4.17
1176 1228 4.506005 ACGTTCTTGCGTGTGTCA 57.494 50.000 0.00 0.00 43.99 3.58
1471 1526 2.363795 TCGTCCTACCAGGCCCTG 60.364 66.667 2.91 2.91 34.61 4.45
1495 1550 4.988598 CACAAGGCGAGCCACCGT 62.989 66.667 17.18 7.05 38.92 4.83
1651 1706 0.321996 GCAAGAAGACCTTCCCGACT 59.678 55.000 6.17 0.00 40.33 4.18
1858 1919 1.556911 AGGCTAATGATCCCGGCATAG 59.443 52.381 0.00 0.00 0.00 2.23
1859 1920 1.279271 GGCTAATGATCCCGGCATAGT 59.721 52.381 0.00 0.00 0.00 2.12
1860 1921 2.290323 GGCTAATGATCCCGGCATAGTT 60.290 50.000 0.00 0.00 0.00 2.24
1861 1922 3.412386 GCTAATGATCCCGGCATAGTTT 58.588 45.455 0.00 0.00 0.00 2.66
1909 1973 3.996363 TCAACCAGTTGATGAGTGAATCG 59.004 43.478 9.12 0.00 43.90 3.34
1910 1974 2.350522 ACCAGTTGATGAGTGAATCGC 58.649 47.619 0.00 0.00 0.00 4.58
1911 1975 1.325640 CCAGTTGATGAGTGAATCGCG 59.674 52.381 0.00 0.00 0.00 5.87
1912 1976 1.995484 CAGTTGATGAGTGAATCGCGT 59.005 47.619 5.77 0.00 0.00 6.01
1913 1977 1.995484 AGTTGATGAGTGAATCGCGTG 59.005 47.619 5.77 0.00 0.00 5.34
1914 1978 1.726791 GTTGATGAGTGAATCGCGTGT 59.273 47.619 5.77 0.00 0.00 4.49
1915 1979 1.629013 TGATGAGTGAATCGCGTGTC 58.371 50.000 5.77 5.34 0.00 3.67
1916 1980 0.924090 GATGAGTGAATCGCGTGTCC 59.076 55.000 5.77 0.00 0.00 4.02
1917 1981 0.460284 ATGAGTGAATCGCGTGTCCC 60.460 55.000 5.77 0.00 0.00 4.46
1918 1982 2.126071 AGTGAATCGCGTGTCCCG 60.126 61.111 5.77 0.00 40.40 5.14
1919 1983 2.431942 GTGAATCGCGTGTCCCGT 60.432 61.111 5.77 0.00 39.32 5.28
1920 1984 2.126228 TGAATCGCGTGTCCCGTC 60.126 61.111 5.77 0.00 39.32 4.79
1962 2026 0.107017 ATTGCTTATGCTCGGCTGGT 60.107 50.000 1.96 0.00 40.48 4.00
1976 2040 1.066716 GGCTGGTTGGTGATACGTACA 60.067 52.381 0.00 0.00 0.00 2.90
1978 2042 2.610976 GCTGGTTGGTGATACGTACACA 60.611 50.000 21.55 13.02 39.65 3.72
1991 2172 0.108945 GTACACACGTACCTCCTGCC 60.109 60.000 0.00 0.00 41.92 4.85
1994 2175 1.533273 ACACGTACCTCCTGCCTGT 60.533 57.895 0.00 0.00 0.00 4.00
2025 2210 0.308376 GTGTAGAGGTCGATCGAGCC 59.692 60.000 36.09 28.40 42.97 4.70
2053 2238 7.378966 CCATCGATTGGTGTAGTACATATCTT 58.621 38.462 6.21 0.00 40.99 2.40
2054 2239 7.329471 CCATCGATTGGTGTAGTACATATCTTG 59.671 40.741 6.21 9.67 40.99 3.02
2125 2310 9.405587 TCGGTTCTTTCATTGATTAATTTGTTC 57.594 29.630 0.00 0.00 0.00 3.18
2128 2313 9.191995 GTTCTTTCATTGATTAATTTGTTCGGT 57.808 29.630 0.00 0.00 0.00 4.69
2131 2316 7.865875 TTCATTGATTAATTTGTTCGGTGTG 57.134 32.000 0.00 0.00 0.00 3.82
2132 2317 7.208225 TCATTGATTAATTTGTTCGGTGTGA 57.792 32.000 0.00 0.00 0.00 3.58
2134 2319 5.041951 TGATTAATTTGTTCGGTGTGAGC 57.958 39.130 0.00 0.00 0.00 4.26
2136 2321 5.182950 TGATTAATTTGTTCGGTGTGAGCAT 59.817 36.000 0.00 0.00 37.67 3.79
2137 2322 3.559238 AATTTGTTCGGTGTGAGCATC 57.441 42.857 0.00 0.00 37.67 3.91
2189 2377 7.306953 ACAGAGAGTACAACTAATTCTTCGAC 58.693 38.462 0.00 0.00 0.00 4.20
2193 2381 7.983307 AGAGTACAACTAATTCTTCGACGTAT 58.017 34.615 0.00 0.00 0.00 3.06
2194 2382 7.909121 AGAGTACAACTAATTCTTCGACGTATG 59.091 37.037 0.00 0.00 0.00 2.39
2195 2383 5.697848 ACAACTAATTCTTCGACGTATGC 57.302 39.130 0.00 0.00 0.00 3.14
2198 2386 4.360563 ACTAATTCTTCGACGTATGCCAG 58.639 43.478 0.00 0.00 0.00 4.85
2199 2387 3.520290 AATTCTTCGACGTATGCCAGA 57.480 42.857 0.00 0.00 0.00 3.86
2200 2388 2.273370 TTCTTCGACGTATGCCAGAC 57.727 50.000 0.00 0.00 0.00 3.51
2226 2424 6.798766 AGTACTAGTAGTTGGGTAAAGACCT 58.201 40.000 8.40 0.00 46.09 3.85
2355 2556 3.313526 CCGAATTCAATCTTAGCCACCAG 59.686 47.826 6.22 0.00 0.00 4.00
2360 2561 3.674997 TCAATCTTAGCCACCAGAACAC 58.325 45.455 0.00 0.00 0.00 3.32
2477 2687 2.736531 GGGGCAAAGTGGCAGTTG 59.263 61.111 8.61 7.39 45.76 3.16
2497 2707 3.740397 CGACCAGGCACGTACCGA 61.740 66.667 0.00 0.00 33.69 4.69
2564 2774 6.563422 TGAACTGTTTCCACTGAAAAAGATG 58.437 36.000 11.22 0.00 45.17 2.90
2597 2808 2.669569 CGGAGGTGCCACCACAAG 60.670 66.667 17.80 4.15 43.88 3.16
2631 2847 2.877335 ACATTTTCTAGAGGCGACGAC 58.123 47.619 0.00 0.00 0.00 4.34
2664 2905 1.131126 GAAAGTCGTGGCACATCATGG 59.869 52.381 19.09 0.00 44.52 3.66
2670 2911 0.523072 GTGGCACATCATGGTCACAC 59.477 55.000 13.86 0.00 44.52 3.82
2689 2931 4.787280 CGGAGTCCAGCCCCTCCT 62.787 72.222 10.49 0.00 44.24 3.69
2721 2963 0.455633 GCAGCTTTGCCATGTTCGAG 60.456 55.000 0.00 0.00 0.00 4.04
2728 2970 2.715749 TGCCATGTTCGAGGATTGAT 57.284 45.000 0.00 0.00 0.00 2.57
2734 2976 5.239306 GCCATGTTCGAGGATTGATAATCAA 59.761 40.000 0.00 0.00 41.09 2.57
2745 2987 5.278364 GGATTGATAATCAAGCTCAAGCTGG 60.278 44.000 5.06 2.19 43.98 4.85
2767 3010 2.226912 CCGGCCTTGTATTTTCAAACGA 59.773 45.455 0.00 0.00 0.00 3.85
2768 3011 3.119637 CCGGCCTTGTATTTTCAAACGAT 60.120 43.478 0.00 0.00 0.00 3.73
2769 3012 4.481463 CGGCCTTGTATTTTCAAACGATT 58.519 39.130 0.00 0.00 0.00 3.34
2770 3013 4.920927 CGGCCTTGTATTTTCAAACGATTT 59.079 37.500 0.00 0.00 0.00 2.17
2771 3014 5.404066 CGGCCTTGTATTTTCAAACGATTTT 59.596 36.000 0.00 0.00 0.00 1.82
2772 3015 6.074034 CGGCCTTGTATTTTCAAACGATTTTT 60.074 34.615 0.00 0.00 0.00 1.94
2795 3038 6.569228 TTTTTCGAGAGTACATCAATAGCG 57.431 37.500 0.00 0.00 0.00 4.26
2796 3039 4.895224 TTCGAGAGTACATCAATAGCGT 57.105 40.909 0.00 0.00 0.00 5.07
2797 3040 5.996669 TTCGAGAGTACATCAATAGCGTA 57.003 39.130 0.00 0.00 0.00 4.42
2798 3041 5.340010 TCGAGAGTACATCAATAGCGTAC 57.660 43.478 0.00 0.00 36.57 3.67
2799 3042 4.212847 TCGAGAGTACATCAATAGCGTACC 59.787 45.833 0.00 0.00 36.91 3.34
2800 3043 4.213694 CGAGAGTACATCAATAGCGTACCT 59.786 45.833 0.00 0.00 36.91 3.08
2801 3044 5.277876 CGAGAGTACATCAATAGCGTACCTT 60.278 44.000 0.00 0.00 36.91 3.50
2802 3045 6.466885 AGAGTACATCAATAGCGTACCTTT 57.533 37.500 0.00 0.00 36.91 3.11
2803 3046 7.519488 CGAGAGTACATCAATAGCGTACCTTTA 60.519 40.741 0.00 0.00 36.91 1.85
2804 3047 8.004087 AGAGTACATCAATAGCGTACCTTTAA 57.996 34.615 0.00 0.00 36.91 1.52
2805 3048 8.639761 AGAGTACATCAATAGCGTACCTTTAAT 58.360 33.333 0.00 0.00 36.91 1.40
2806 3049 9.257651 GAGTACATCAATAGCGTACCTTTAATT 57.742 33.333 0.00 0.00 36.91 1.40
2807 3050 9.609346 AGTACATCAATAGCGTACCTTTAATTT 57.391 29.630 0.00 0.00 36.91 1.82
2808 3051 9.859692 GTACATCAATAGCGTACCTTTAATTTC 57.140 33.333 0.00 0.00 31.34 2.17
2809 3052 8.500753 ACATCAATAGCGTACCTTTAATTTCA 57.499 30.769 0.00 0.00 0.00 2.69
2810 3053 9.120538 ACATCAATAGCGTACCTTTAATTTCAT 57.879 29.630 0.00 0.00 0.00 2.57
2816 3059 7.787725 AGCGTACCTTTAATTTCATAGAAGG 57.212 36.000 0.00 0.00 41.98 3.46
2817 3060 6.766467 AGCGTACCTTTAATTTCATAGAAGGG 59.234 38.462 5.54 0.00 40.87 3.95
2818 3061 6.764560 GCGTACCTTTAATTTCATAGAAGGGA 59.235 38.462 5.54 0.00 40.87 4.20
2819 3062 7.041984 GCGTACCTTTAATTTCATAGAAGGGAG 60.042 40.741 5.54 0.00 40.87 4.30
2820 3063 8.202137 CGTACCTTTAATTTCATAGAAGGGAGA 58.798 37.037 5.54 0.00 40.87 3.71
2821 3064 9.901172 GTACCTTTAATTTCATAGAAGGGAGAA 57.099 33.333 5.54 0.00 40.87 2.87
2823 3066 9.413734 ACCTTTAATTTCATAGAAGGGAGAATG 57.586 33.333 5.54 0.00 40.87 2.67
2824 3067 9.632638 CCTTTAATTTCATAGAAGGGAGAATGA 57.367 33.333 0.00 0.00 34.58 2.57
2826 3069 9.973661 TTTAATTTCATAGAAGGGAGAATGACA 57.026 29.630 0.00 0.00 0.00 3.58
2827 3070 9.973661 TTAATTTCATAGAAGGGAGAATGACAA 57.026 29.630 0.00 0.00 0.00 3.18
2833 3076 9.379770 TCATAGAAGGGAGAATGACAATATACA 57.620 33.333 0.00 0.00 0.00 2.29
2836 3079 8.324191 AGAAGGGAGAATGACAATATACAAGA 57.676 34.615 0.00 0.00 0.00 3.02
2837 3080 8.772250 AGAAGGGAGAATGACAATATACAAGAA 58.228 33.333 0.00 0.00 0.00 2.52
2838 3081 8.970859 AAGGGAGAATGACAATATACAAGAAG 57.029 34.615 0.00 0.00 0.00 2.85
2839 3082 6.995091 AGGGAGAATGACAATATACAAGAAGC 59.005 38.462 0.00 0.00 0.00 3.86
2840 3083 6.205658 GGGAGAATGACAATATACAAGAAGCC 59.794 42.308 0.00 0.00 0.00 4.35
2841 3084 6.995091 GGAGAATGACAATATACAAGAAGCCT 59.005 38.462 0.00 0.00 0.00 4.58
2842 3085 8.150945 GGAGAATGACAATATACAAGAAGCCTA 58.849 37.037 0.00 0.00 0.00 3.93
2843 3086 9.547753 GAGAATGACAATATACAAGAAGCCTAA 57.452 33.333 0.00 0.00 0.00 2.69
2844 3087 9.905713 AGAATGACAATATACAAGAAGCCTAAA 57.094 29.630 0.00 0.00 0.00 1.85
2846 3089 9.686683 AATGACAATATACAAGAAGCCTAAAGT 57.313 29.630 0.00 0.00 0.00 2.66
2847 3090 9.686683 ATGACAATATACAAGAAGCCTAAAGTT 57.313 29.630 0.00 0.00 0.00 2.66
2856 3099 8.697846 ACAAGAAGCCTAAAGTTAAAACAAAC 57.302 30.769 0.00 0.00 0.00 2.93
2857 3100 7.762615 ACAAGAAGCCTAAAGTTAAAACAAACC 59.237 33.333 0.00 0.00 0.00 3.27
2858 3101 7.655521 AGAAGCCTAAAGTTAAAACAAACCT 57.344 32.000 0.00 0.00 0.00 3.50
2859 3102 7.713750 AGAAGCCTAAAGTTAAAACAAACCTC 58.286 34.615 0.00 0.00 0.00 3.85
2860 3103 6.401047 AGCCTAAAGTTAAAACAAACCTCC 57.599 37.500 0.00 0.00 0.00 4.30
2861 3104 5.894964 AGCCTAAAGTTAAAACAAACCTCCA 59.105 36.000 0.00 0.00 0.00 3.86
2862 3105 6.553476 AGCCTAAAGTTAAAACAAACCTCCAT 59.447 34.615 0.00 0.00 0.00 3.41
2863 3106 6.866770 GCCTAAAGTTAAAACAAACCTCCATC 59.133 38.462 0.00 0.00 0.00 3.51
2864 3107 7.255836 GCCTAAAGTTAAAACAAACCTCCATCT 60.256 37.037 0.00 0.00 0.00 2.90
2865 3108 8.638873 CCTAAAGTTAAAACAAACCTCCATCTT 58.361 33.333 0.00 0.00 0.00 2.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
31 32 0.760567 TGCATCCGCTCCTGGACTAT 60.761 55.000 0.00 0.00 41.85 2.12
80 81 1.086696 CAACACACGATCCACCATCC 58.913 55.000 0.00 0.00 0.00 3.51
97 98 2.968156 CACGAACCGCGAACCCAA 60.968 61.111 8.23 0.00 44.57 4.12
175 178 2.272146 CCCGGACACCCCATCAAG 59.728 66.667 0.73 0.00 34.14 3.02
214 217 5.952526 AAGGTAAAACCATTACCGTTGAG 57.047 39.130 10.76 0.00 46.81 3.02
408 411 9.981114 CAAAGGAATAACAACCAAGAACTAAAT 57.019 29.630 0.00 0.00 0.00 1.40
413 416 5.462068 GCACAAAGGAATAACAACCAAGAAC 59.538 40.000 0.00 0.00 0.00 3.01
451 454 3.119673 TCGCAAAACTGAAAAGACAGCAA 60.120 39.130 0.00 0.00 41.06 3.91
472 475 3.314541 ACAAGTCATGTAACCGACCTC 57.685 47.619 0.00 0.00 41.63 3.85
541 544 8.814235 TCTTTAAAGAGTGTACTTTCAACTTCG 58.186 33.333 13.99 0.00 40.09 3.79
564 567 7.177878 ACTTGGATCAATAATCAACCACTCTT 58.822 34.615 0.00 0.00 35.96 2.85
565 568 6.725364 ACTTGGATCAATAATCAACCACTCT 58.275 36.000 0.00 0.00 35.96 3.24
566 569 7.396540 AACTTGGATCAATAATCAACCACTC 57.603 36.000 0.00 0.00 35.96 3.51
567 570 6.378280 GGAACTTGGATCAATAATCAACCACT 59.622 38.462 0.00 0.00 35.96 4.00
568 571 6.152661 TGGAACTTGGATCAATAATCAACCAC 59.847 38.462 0.00 0.00 35.96 4.16
569 572 6.252233 TGGAACTTGGATCAATAATCAACCA 58.748 36.000 0.00 0.00 35.96 3.67
570 573 6.773976 TGGAACTTGGATCAATAATCAACC 57.226 37.500 0.00 0.00 35.96 3.77
571 574 8.689972 AGAATGGAACTTGGATCAATAATCAAC 58.310 33.333 0.00 0.00 35.96 3.18
572 575 8.827832 AGAATGGAACTTGGATCAATAATCAA 57.172 30.769 0.00 0.00 35.96 2.57
573 576 8.277197 AGAGAATGGAACTTGGATCAATAATCA 58.723 33.333 0.00 0.00 35.96 2.57
574 577 8.688747 AGAGAATGGAACTTGGATCAATAATC 57.311 34.615 0.00 0.00 0.00 1.75
575 578 8.277197 TGAGAGAATGGAACTTGGATCAATAAT 58.723 33.333 0.00 0.00 0.00 1.28
576 579 7.632861 TGAGAGAATGGAACTTGGATCAATAA 58.367 34.615 0.00 0.00 0.00 1.40
577 580 7.199167 TGAGAGAATGGAACTTGGATCAATA 57.801 36.000 0.00 0.00 0.00 1.90
578 581 6.070951 TGAGAGAATGGAACTTGGATCAAT 57.929 37.500 0.00 0.00 0.00 2.57
579 582 5.503634 TGAGAGAATGGAACTTGGATCAA 57.496 39.130 0.00 0.00 0.00 2.57
580 583 5.503634 TTGAGAGAATGGAACTTGGATCA 57.496 39.130 0.00 0.00 0.00 2.92
581 584 6.824305 TTTTGAGAGAATGGAACTTGGATC 57.176 37.500 0.00 0.00 0.00 3.36
612 615 8.646900 GGTCATTGAAGAAGAGTAGAGGATATT 58.353 37.037 0.00 0.00 0.00 1.28
613 616 7.040062 CGGTCATTGAAGAAGAGTAGAGGATAT 60.040 40.741 0.00 0.00 0.00 1.63
614 617 6.263392 CGGTCATTGAAGAAGAGTAGAGGATA 59.737 42.308 0.00 0.00 0.00 2.59
615 618 5.068460 CGGTCATTGAAGAAGAGTAGAGGAT 59.932 44.000 0.00 0.00 0.00 3.24
616 619 4.399618 CGGTCATTGAAGAAGAGTAGAGGA 59.600 45.833 0.00 0.00 0.00 3.71
617 620 4.158764 ACGGTCATTGAAGAAGAGTAGAGG 59.841 45.833 0.00 0.00 0.00 3.69
618 621 5.098893 CACGGTCATTGAAGAAGAGTAGAG 58.901 45.833 0.00 0.00 0.00 2.43
619 622 4.765339 TCACGGTCATTGAAGAAGAGTAGA 59.235 41.667 0.00 0.00 0.00 2.59
620 623 5.060662 TCACGGTCATTGAAGAAGAGTAG 57.939 43.478 0.00 0.00 0.00 2.57
621 624 5.462530 TTCACGGTCATTGAAGAAGAGTA 57.537 39.130 0.00 0.00 0.00 2.59
622 625 4.336889 TTCACGGTCATTGAAGAAGAGT 57.663 40.909 0.00 0.00 0.00 3.24
623 626 5.174395 AGATTCACGGTCATTGAAGAAGAG 58.826 41.667 0.00 0.00 36.44 2.85
626 629 7.102993 TGATAAGATTCACGGTCATTGAAGAA 58.897 34.615 0.00 0.00 36.44 2.52
633 636 6.644347 AGAACTTGATAAGATTCACGGTCAT 58.356 36.000 0.00 0.00 34.85 3.06
656 660 1.252904 TACCCGGTCGTGGAAAGGAG 61.253 60.000 0.00 0.00 0.00 3.69
670 674 0.458025 GCGGACTTGTTCTCTACCCG 60.458 60.000 0.00 0.00 38.58 5.28
674 678 2.488545 GTGAGAGCGGACTTGTTCTCTA 59.511 50.000 8.66 0.00 43.97 2.43
688 692 5.048364 TCAGTGAAGAAGAGTAAGTGAGAGC 60.048 44.000 0.00 0.00 0.00 4.09
719 730 3.055385 CGGGGTCCAGAACTTGATAAGAA 60.055 47.826 0.00 0.00 0.00 2.52
741 753 2.615447 TGATGATGATTCGGCTGCTTTC 59.385 45.455 0.00 0.00 0.00 2.62
745 757 4.393990 TGATTATGATGATGATTCGGCTGC 59.606 41.667 0.00 0.00 0.00 5.25
848 869 1.124780 GGGAGGGAGGAAGAGTTAGC 58.875 60.000 0.00 0.00 0.00 3.09
896 917 0.454196 GAGAGACCGAGTGAGGAAGC 59.546 60.000 0.00 0.00 34.73 3.86
1064 1111 0.753867 GGAGGGAAGTAGCTACTGGC 59.246 60.000 26.70 20.16 36.50 4.85
1066 1113 2.312390 GAGGGAGGGAAGTAGCTACTG 58.688 57.143 26.70 0.00 36.50 2.74
1067 1114 1.133730 CGAGGGAGGGAAGTAGCTACT 60.134 57.143 20.95 20.95 38.39 2.57
1068 1115 1.320507 CGAGGGAGGGAAGTAGCTAC 58.679 60.000 16.43 16.43 0.00 3.58
1069 1116 0.467659 GCGAGGGAGGGAAGTAGCTA 60.468 60.000 0.00 0.00 0.00 3.32
1070 1117 1.758906 GCGAGGGAGGGAAGTAGCT 60.759 63.158 0.00 0.00 0.00 3.32
1071 1118 2.798364 GGCGAGGGAGGGAAGTAGC 61.798 68.421 0.00 0.00 0.00 3.58
1072 1119 1.075896 AGGCGAGGGAGGGAAGTAG 60.076 63.158 0.00 0.00 0.00 2.57
1073 1120 1.076192 GAGGCGAGGGAGGGAAGTA 60.076 63.158 0.00 0.00 0.00 2.24
1074 1121 2.364448 GAGGCGAGGGAGGGAAGT 60.364 66.667 0.00 0.00 0.00 3.01
1075 1122 2.364317 TGAGGCGAGGGAGGGAAG 60.364 66.667 0.00 0.00 0.00 3.46
1076 1123 2.683933 GTGAGGCGAGGGAGGGAA 60.684 66.667 0.00 0.00 0.00 3.97
1077 1124 3.239627 AAGTGAGGCGAGGGAGGGA 62.240 63.158 0.00 0.00 0.00 4.20
1078 1125 2.685380 AAGTGAGGCGAGGGAGGG 60.685 66.667 0.00 0.00 0.00 4.30
1079 1126 2.726351 GGAAGTGAGGCGAGGGAGG 61.726 68.421 0.00 0.00 0.00 4.30
1080 1127 2.726351 GGGAAGTGAGGCGAGGGAG 61.726 68.421 0.00 0.00 0.00 4.30
1081 1128 2.683933 GGGAAGTGAGGCGAGGGA 60.684 66.667 0.00 0.00 0.00 4.20
1082 1129 4.148825 CGGGAAGTGAGGCGAGGG 62.149 72.222 0.00 0.00 0.00 4.30
1083 1130 2.646175 TTCGGGAAGTGAGGCGAGG 61.646 63.158 0.00 0.00 0.00 4.63
1084 1131 1.446272 GTTCGGGAAGTGAGGCGAG 60.446 63.158 0.00 0.00 0.00 5.03
1085 1132 2.654877 GTTCGGGAAGTGAGGCGA 59.345 61.111 0.00 0.00 0.00 5.54
1086 1133 2.434359 GGTTCGGGAAGTGAGGCG 60.434 66.667 0.00 0.00 0.00 5.52
1087 1134 1.671379 GTGGTTCGGGAAGTGAGGC 60.671 63.158 0.00 0.00 0.00 4.70
1088 1135 1.204941 CTAGTGGTTCGGGAAGTGAGG 59.795 57.143 0.00 0.00 0.00 3.86
1089 1136 1.404315 GCTAGTGGTTCGGGAAGTGAG 60.404 57.143 0.00 0.00 0.00 3.51
1090 1137 0.606604 GCTAGTGGTTCGGGAAGTGA 59.393 55.000 0.00 0.00 0.00 3.41
1091 1138 0.608640 AGCTAGTGGTTCGGGAAGTG 59.391 55.000 0.00 0.00 0.00 3.16
1092 1139 2.226962 TAGCTAGTGGTTCGGGAAGT 57.773 50.000 0.00 0.00 0.00 3.01
1093 1140 2.496470 AGTTAGCTAGTGGTTCGGGAAG 59.504 50.000 0.00 0.00 0.00 3.46
1094 1141 2.532843 AGTTAGCTAGTGGTTCGGGAA 58.467 47.619 0.00 0.00 0.00 3.97
1095 1142 2.226962 AGTTAGCTAGTGGTTCGGGA 57.773 50.000 0.00 0.00 0.00 5.14
1096 1143 3.022406 AGTAGTTAGCTAGTGGTTCGGG 58.978 50.000 0.00 0.00 30.13 5.14
1097 1144 3.734293 GCAGTAGTTAGCTAGTGGTTCGG 60.734 52.174 19.45 0.00 44.71 4.30
1098 1145 3.436496 GCAGTAGTTAGCTAGTGGTTCG 58.564 50.000 19.45 0.00 44.71 3.95
1099 1146 3.430513 GGGCAGTAGTTAGCTAGTGGTTC 60.431 52.174 19.45 6.36 44.71 3.62
1100 1147 2.500504 GGGCAGTAGTTAGCTAGTGGTT 59.499 50.000 19.45 0.00 44.71 3.67
1101 1148 2.108970 GGGCAGTAGTTAGCTAGTGGT 58.891 52.381 19.45 0.00 44.71 4.16
1102 1149 2.108168 TGGGCAGTAGTTAGCTAGTGG 58.892 52.381 19.45 5.43 44.71 4.00
1103 1150 2.159085 GGTGGGCAGTAGTTAGCTAGTG 60.159 54.545 15.15 15.15 46.37 2.74
1104 1151 2.108970 GGTGGGCAGTAGTTAGCTAGT 58.891 52.381 0.00 0.00 0.00 2.57
1105 1152 2.108168 TGGTGGGCAGTAGTTAGCTAG 58.892 52.381 0.00 0.00 0.00 3.42
1129 1181 1.544825 TTCCCTCTGGCACGAAGGAG 61.545 60.000 7.27 1.17 0.00 3.69
1145 1197 0.452784 GAACGTGCGTTGCTGATTCC 60.453 55.000 14.89 0.00 38.60 3.01
1175 1227 3.312504 CGCACGTACGCCGATCTG 61.313 66.667 20.08 9.58 40.70 2.90
1176 1228 3.807538 ACGCACGTACGCCGATCT 61.808 61.111 28.05 9.54 40.70 2.75
1449 1504 1.677637 GGCCTGGTAGGACGAGAAGG 61.678 65.000 0.00 0.00 37.67 3.46
1450 1505 1.817209 GGCCTGGTAGGACGAGAAG 59.183 63.158 0.00 0.00 37.67 2.85
1918 1982 0.529378 AGAATACACACCGACGGGAC 59.471 55.000 20.00 0.28 36.97 4.46
1919 1983 1.259609 AAGAATACACACCGACGGGA 58.740 50.000 20.00 0.00 36.97 5.14
1920 1984 2.088950 AAAGAATACACACCGACGGG 57.911 50.000 20.00 9.81 40.11 5.28
1976 2040 1.533273 ACAGGCAGGAGGTACGTGT 60.533 57.895 0.00 0.00 36.83 4.49
1978 2042 1.228769 TGACAGGCAGGAGGTACGT 60.229 57.895 0.00 0.00 0.00 3.57
1994 2175 1.550327 CTCTACACTCCACTGGCTGA 58.450 55.000 0.00 0.00 0.00 4.26
2084 2269 6.627395 AAGAACCGATCTACTGAGATACAG 57.373 41.667 0.00 0.00 42.80 2.74
2087 2272 7.825331 ATGAAAGAACCGATCTACTGAGATA 57.175 36.000 0.00 0.00 42.80 1.98
2102 2287 9.191995 ACCGAACAAATTAATCAATGAAAGAAC 57.808 29.630 0.00 0.00 0.00 3.01
2125 2310 4.591202 GTTCAATTATGATGCTCACACCG 58.409 43.478 0.00 0.00 34.96 4.94
2128 2313 5.418676 TCTCGTTCAATTATGATGCTCACA 58.581 37.500 0.00 0.00 34.96 3.58
2131 2316 7.182361 TCAATCTCGTTCAATTATGATGCTC 57.818 36.000 0.00 0.00 34.96 4.26
2132 2317 7.741027 ATCAATCTCGTTCAATTATGATGCT 57.259 32.000 0.00 0.00 34.96 3.79
2134 2319 9.983804 CCATATCAATCTCGTTCAATTATGATG 57.016 33.333 0.00 0.00 34.96 3.07
2140 2325 9.996554 TGTATACCATATCAATCTCGTTCAATT 57.003 29.630 0.00 0.00 0.00 2.32
2142 2327 8.856103 TCTGTATACCATATCAATCTCGTTCAA 58.144 33.333 0.00 0.00 0.00 2.69
2143 2328 8.404107 TCTGTATACCATATCAATCTCGTTCA 57.596 34.615 0.00 0.00 0.00 3.18
2144 2329 8.731605 TCTCTGTATACCATATCAATCTCGTTC 58.268 37.037 0.00 0.00 0.00 3.95
2187 2375 5.055812 ACTAGTACTAGTCTGGCATACGTC 58.944 45.833 26.61 0.00 42.30 4.34
2189 2377 6.222389 ACTACTAGTACTAGTCTGGCATACG 58.778 44.000 33.47 16.00 44.58 3.06
2193 2381 5.191426 CCAACTACTAGTACTAGTCTGGCA 58.809 45.833 33.47 18.02 44.58 4.92
2194 2382 4.579753 CCCAACTACTAGTACTAGTCTGGC 59.420 50.000 33.47 0.00 44.58 4.85
2195 2383 5.753716 ACCCAACTACTAGTACTAGTCTGG 58.246 45.833 33.47 31.56 44.58 3.86
2198 2386 8.888716 GTCTTTACCCAACTACTAGTACTAGTC 58.111 40.741 33.47 14.03 44.58 2.59
2199 2387 7.831690 GGTCTTTACCCAACTACTAGTACTAGT 59.168 40.741 32.39 32.39 43.14 2.57
2200 2388 8.219546 GGTCTTTACCCAACTACTAGTACTAG 57.780 42.308 25.30 25.30 40.21 2.57
2226 2424 3.191162 GCACATTTCATTGCTGGTCAGTA 59.809 43.478 0.00 0.00 35.74 2.74
2355 2556 4.174762 GTTACTTCCTGATCGAGGTGTTC 58.825 47.826 9.98 0.00 43.37 3.18
2360 2561 2.422479 TCGTGTTACTTCCTGATCGAGG 59.578 50.000 5.18 5.18 44.45 4.63
2380 2581 3.378742 TCGATTCTAGAGACTGCCAACTC 59.621 47.826 0.00 0.00 0.00 3.01
2420 2630 3.206150 GCGTTCATATCCTTCACCATGT 58.794 45.455 0.00 0.00 0.00 3.21
2459 2669 2.524148 AACTGCCACTTTGCCCCC 60.524 61.111 0.00 0.00 0.00 5.40
2477 2687 2.506438 GTACGTGCCTGGTCGCTC 60.506 66.667 0.00 4.01 0.00 5.03
2564 2774 0.170561 TCCGCTGTCTACTTCTTCGC 59.829 55.000 0.00 0.00 0.00 4.70
2597 2808 0.609662 AAATGTTCCATGCTGCACCC 59.390 50.000 3.57 0.00 0.00 4.61
2664 2905 2.430921 CTGGACTCCGCGTGTGAC 60.431 66.667 4.92 0.00 0.00 3.67
2689 2931 2.749839 GCTGCAACCGGGCATACA 60.750 61.111 6.32 0.00 43.97 2.29
2745 2987 2.333926 GTTTGAAAATACAAGGCCGGC 58.666 47.619 21.18 21.18 0.00 6.13
2772 3015 6.097356 ACGCTATTGATGTACTCTCGAAAAA 58.903 36.000 0.00 0.00 0.00 1.94
2773 3016 5.647589 ACGCTATTGATGTACTCTCGAAAA 58.352 37.500 0.00 0.00 0.00 2.29
2774 3017 5.244785 ACGCTATTGATGTACTCTCGAAA 57.755 39.130 0.00 0.00 0.00 3.46
2775 3018 4.895224 ACGCTATTGATGTACTCTCGAA 57.105 40.909 0.00 0.00 0.00 3.71
2776 3019 4.212847 GGTACGCTATTGATGTACTCTCGA 59.787 45.833 0.00 0.00 38.74 4.04
2777 3020 4.213694 AGGTACGCTATTGATGTACTCTCG 59.786 45.833 0.00 0.00 38.74 4.04
2778 3021 5.692613 AGGTACGCTATTGATGTACTCTC 57.307 43.478 0.00 0.00 38.74 3.20
2779 3022 6.466885 AAAGGTACGCTATTGATGTACTCT 57.533 37.500 0.00 4.14 38.74 3.24
2780 3023 8.813643 ATTAAAGGTACGCTATTGATGTACTC 57.186 34.615 0.00 0.00 38.74 2.59
2781 3024 9.609346 AAATTAAAGGTACGCTATTGATGTACT 57.391 29.630 0.00 0.00 38.74 2.73
2782 3025 9.859692 GAAATTAAAGGTACGCTATTGATGTAC 57.140 33.333 0.00 0.00 38.15 2.90
2783 3026 9.602568 TGAAATTAAAGGTACGCTATTGATGTA 57.397 29.630 0.00 0.00 0.00 2.29
2784 3027 8.500753 TGAAATTAAAGGTACGCTATTGATGT 57.499 30.769 0.00 0.00 0.00 3.06
2790 3033 9.490379 CCTTCTATGAAATTAAAGGTACGCTAT 57.510 33.333 0.00 0.00 34.11 2.97
2791 3034 7.929785 CCCTTCTATGAAATTAAAGGTACGCTA 59.070 37.037 0.00 0.00 35.92 4.26
2792 3035 6.766467 CCCTTCTATGAAATTAAAGGTACGCT 59.234 38.462 0.00 0.00 35.92 5.07
2793 3036 6.764560 TCCCTTCTATGAAATTAAAGGTACGC 59.235 38.462 0.00 0.00 35.92 4.42
2794 3037 8.202137 TCTCCCTTCTATGAAATTAAAGGTACG 58.798 37.037 0.00 0.00 35.92 3.67
2795 3038 9.901172 TTCTCCCTTCTATGAAATTAAAGGTAC 57.099 33.333 0.00 0.00 35.92 3.34
2797 3040 9.413734 CATTCTCCCTTCTATGAAATTAAAGGT 57.586 33.333 0.00 0.00 35.92 3.50
2798 3041 9.632638 TCATTCTCCCTTCTATGAAATTAAAGG 57.367 33.333 0.00 0.00 36.86 3.11
2800 3043 9.973661 TGTCATTCTCCCTTCTATGAAATTAAA 57.026 29.630 0.00 0.00 0.00 1.52
2801 3044 9.973661 TTGTCATTCTCCCTTCTATGAAATTAA 57.026 29.630 0.00 0.00 0.00 1.40
2807 3050 9.379770 TGTATATTGTCATTCTCCCTTCTATGA 57.620 33.333 0.00 0.00 0.00 2.15
2810 3053 9.434275 TCTTGTATATTGTCATTCTCCCTTCTA 57.566 33.333 0.00 0.00 0.00 2.10
2811 3054 8.324191 TCTTGTATATTGTCATTCTCCCTTCT 57.676 34.615 0.00 0.00 0.00 2.85
2812 3055 8.964476 TTCTTGTATATTGTCATTCTCCCTTC 57.036 34.615 0.00 0.00 0.00 3.46
2813 3056 7.500559 GCTTCTTGTATATTGTCATTCTCCCTT 59.499 37.037 0.00 0.00 0.00 3.95
2814 3057 6.995091 GCTTCTTGTATATTGTCATTCTCCCT 59.005 38.462 0.00 0.00 0.00 4.20
2815 3058 6.205658 GGCTTCTTGTATATTGTCATTCTCCC 59.794 42.308 0.00 0.00 0.00 4.30
2816 3059 6.995091 AGGCTTCTTGTATATTGTCATTCTCC 59.005 38.462 0.00 0.00 0.00 3.71
2817 3060 9.547753 TTAGGCTTCTTGTATATTGTCATTCTC 57.452 33.333 0.00 0.00 0.00 2.87
2818 3061 9.905713 TTTAGGCTTCTTGTATATTGTCATTCT 57.094 29.630 0.00 0.00 0.00 2.40
2820 3063 9.686683 ACTTTAGGCTTCTTGTATATTGTCATT 57.313 29.630 0.00 0.00 0.00 2.57
2821 3064 9.686683 AACTTTAGGCTTCTTGTATATTGTCAT 57.313 29.630 0.00 0.00 0.00 3.06
2830 3073 9.791820 GTTTGTTTTAACTTTAGGCTTCTTGTA 57.208 29.630 0.00 0.00 0.00 2.41
2831 3074 7.762615 GGTTTGTTTTAACTTTAGGCTTCTTGT 59.237 33.333 0.00 0.00 0.00 3.16
2832 3075 7.979537 AGGTTTGTTTTAACTTTAGGCTTCTTG 59.020 33.333 0.00 0.00 0.00 3.02
2833 3076 8.074613 AGGTTTGTTTTAACTTTAGGCTTCTT 57.925 30.769 0.00 0.00 0.00 2.52
2834 3077 7.201884 GGAGGTTTGTTTTAACTTTAGGCTTCT 60.202 37.037 0.00 0.00 0.00 2.85
2835 3078 6.921857 GGAGGTTTGTTTTAACTTTAGGCTTC 59.078 38.462 0.00 0.00 0.00 3.86
2836 3079 6.381707 TGGAGGTTTGTTTTAACTTTAGGCTT 59.618 34.615 0.00 0.00 0.00 4.35
2837 3080 5.894964 TGGAGGTTTGTTTTAACTTTAGGCT 59.105 36.000 0.00 0.00 0.00 4.58
2838 3081 6.151663 TGGAGGTTTGTTTTAACTTTAGGC 57.848 37.500 0.00 0.00 0.00 3.93
2839 3082 8.178313 AGATGGAGGTTTGTTTTAACTTTAGG 57.822 34.615 0.00 0.00 0.00 2.69


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.