Multiple sequence alignment - TraesCS4B01G077900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G077900 chr4B 100.000 2409 0 0 1 2409 74909911 74907503 0.000000e+00 4449.0
1 TraesCS4B01G077900 chr4B 92.791 541 35 4 1842 2379 144349592 144349053 0.000000e+00 780.0
2 TraesCS4B01G077900 chr4B 76.208 269 39 8 11 255 126307079 126307346 4.210000e-23 119.0
3 TraesCS4B01G077900 chr4B 100.000 41 0 0 2369 2409 43210773 43210733 2.570000e-10 76.8
4 TraesCS4B01G077900 chr4B 100.000 41 0 0 2369 2409 144348314 144348274 2.570000e-10 76.8
5 TraesCS4B01G077900 chr4D 83.946 1252 88 46 399 1560 50890002 50888774 0.000000e+00 1094.0
6 TraesCS4B01G077900 chr4D 89.377 273 15 8 1558 1825 50888718 50888455 4.960000e-87 331.0
7 TraesCS4B01G077900 chr2D 91.620 537 38 7 1848 2379 6461199 6461733 0.000000e+00 736.0
8 TraesCS4B01G077900 chr2D 89.892 277 5 1 1 254 56543151 56542875 3.840000e-88 335.0
9 TraesCS4B01G077900 chr4A 91.466 539 38 5 1848 2379 636123453 636122916 0.000000e+00 734.0
10 TraesCS4B01G077900 chr4A 90.689 537 43 7 1848 2379 156782228 156782762 0.000000e+00 708.0
11 TraesCS4B01G077900 chr4A 92.063 504 29 4 576 1068 546075865 546076368 0.000000e+00 699.0
12 TraesCS4B01G077900 chr4A 92.202 436 30 4 1849 2283 721938932 721938500 4.400000e-172 614.0
13 TraesCS4B01G077900 chr4A 83.978 362 31 14 1222 1560 546076369 546076726 2.990000e-84 322.0
14 TraesCS4B01G077900 chr4A 85.145 276 11 15 1558 1825 546076783 546077036 3.070000e-64 255.0
15 TraesCS4B01G077900 chr4A 94.030 67 4 0 411 477 546075642 546075708 4.240000e-18 102.0
16 TraesCS4B01G077900 chr3A 91.028 535 45 3 1848 2379 93564569 93565103 0.000000e+00 719.0
17 TraesCS4B01G077900 chr3A 88.828 546 43 13 1848 2379 359072546 359072005 0.000000e+00 654.0
18 TraesCS4B01G077900 chr1D 92.662 477 29 5 1848 2320 239633252 239632778 0.000000e+00 682.0
19 TraesCS4B01G077900 chr1D 100.000 41 0 0 2369 2409 79082194 79082234 2.570000e-10 76.8
20 TraesCS4B01G077900 chr7A 89.054 539 46 6 1843 2379 84692151 84692678 0.000000e+00 656.0
21 TraesCS4B01G077900 chr7A 98.148 54 1 0 1061 1114 547961967 547962020 7.090000e-16 95.3
22 TraesCS4B01G077900 chr3B 88.795 473 38 8 1848 2319 268955933 268956391 1.250000e-157 566.0
23 TraesCS4B01G077900 chr5D 88.889 279 6 1 1 254 483529473 483529195 1.070000e-83 320.0
24 TraesCS4B01G077900 chr5D 100.000 41 0 0 2369 2409 304398061 304398021 2.570000e-10 76.8
25 TraesCS4B01G077900 chr5D 100.000 41 0 0 2369 2409 424651403 424651363 2.570000e-10 76.8
26 TraesCS4B01G077900 chr5D 100.000 41 0 0 2369 2409 481116438 481116478 2.570000e-10 76.8
27 TraesCS4B01G077900 chr5D 100.000 41 0 0 2369 2409 492580631 492580671 2.570000e-10 76.8
28 TraesCS4B01G077900 chr2B 87.814 279 10 1 1 255 74027076 74026798 3.010000e-79 305.0
29 TraesCS4B01G077900 chr6A 100.000 41 0 0 2369 2409 507134133 507134173 2.570000e-10 76.8
30 TraesCS4B01G077900 chr5A 100.000 41 0 0 2369 2409 454349537 454349577 2.570000e-10 76.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G077900 chr4B 74907503 74909911 2408 True 4449.0 4449 100.0000 1 2409 1 chr4B.!!$R2 2408
1 TraesCS4B01G077900 chr4B 144348274 144349592 1318 True 428.4 780 96.3955 1842 2409 2 chr4B.!!$R3 567
2 TraesCS4B01G077900 chr4D 50888455 50890002 1547 True 712.5 1094 86.6615 399 1825 2 chr4D.!!$R1 1426
3 TraesCS4B01G077900 chr2D 6461199 6461733 534 False 736.0 736 91.6200 1848 2379 1 chr2D.!!$F1 531
4 TraesCS4B01G077900 chr4A 636122916 636123453 537 True 734.0 734 91.4660 1848 2379 1 chr4A.!!$R1 531
5 TraesCS4B01G077900 chr4A 156782228 156782762 534 False 708.0 708 90.6890 1848 2379 1 chr4A.!!$F1 531
6 TraesCS4B01G077900 chr4A 546075642 546077036 1394 False 344.5 699 88.8040 411 1825 4 chr4A.!!$F2 1414
7 TraesCS4B01G077900 chr3A 93564569 93565103 534 False 719.0 719 91.0280 1848 2379 1 chr3A.!!$F1 531
8 TraesCS4B01G077900 chr3A 359072005 359072546 541 True 654.0 654 88.8280 1848 2379 1 chr3A.!!$R1 531
9 TraesCS4B01G077900 chr7A 84692151 84692678 527 False 656.0 656 89.0540 1843 2379 1 chr7A.!!$F1 536

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
178 179 0.035152 TCAAAGATGCGCACCCAGAT 60.035 50.0 14.9 0.0 0.0 2.9 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1448 1574 0.105811 GTACTCGGTAGGATGGGGGT 60.106 60.0 0.0 0.0 0.0 4.95 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 2.803203 CCCTTGGCCAGATCATGTG 58.197 57.895 5.11 0.00 0.00 3.21
19 20 0.256752 CCCTTGGCCAGATCATGTGA 59.743 55.000 5.11 0.00 0.00 3.58
20 21 1.133575 CCCTTGGCCAGATCATGTGAT 60.134 52.381 5.11 0.00 37.51 3.06
21 22 2.662866 CCTTGGCCAGATCATGTGATT 58.337 47.619 5.11 0.00 34.37 2.57
22 23 2.621998 CCTTGGCCAGATCATGTGATTC 59.378 50.000 5.11 0.00 34.37 2.52
23 24 3.552875 CTTGGCCAGATCATGTGATTCT 58.447 45.455 5.11 0.00 34.37 2.40
24 25 4.445305 CCTTGGCCAGATCATGTGATTCTA 60.445 45.833 5.11 0.00 34.37 2.10
25 26 4.347360 TGGCCAGATCATGTGATTCTAG 57.653 45.455 0.00 0.00 34.37 2.43
26 27 3.713248 TGGCCAGATCATGTGATTCTAGT 59.287 43.478 0.00 0.00 34.37 2.57
27 28 4.164796 TGGCCAGATCATGTGATTCTAGTT 59.835 41.667 0.00 0.00 34.37 2.24
28 29 4.754114 GGCCAGATCATGTGATTCTAGTTC 59.246 45.833 0.00 0.00 34.37 3.01
29 30 4.447054 GCCAGATCATGTGATTCTAGTTCG 59.553 45.833 0.00 0.00 34.37 3.95
30 31 5.595885 CCAGATCATGTGATTCTAGTTCGT 58.404 41.667 0.00 0.00 34.37 3.85
31 32 6.045318 CCAGATCATGTGATTCTAGTTCGTT 58.955 40.000 0.00 0.00 34.37 3.85
32 33 7.203218 CCAGATCATGTGATTCTAGTTCGTTA 58.797 38.462 0.00 0.00 34.37 3.18
33 34 7.168302 CCAGATCATGTGATTCTAGTTCGTTAC 59.832 40.741 0.00 0.00 34.37 2.50
34 35 7.702348 CAGATCATGTGATTCTAGTTCGTTACA 59.298 37.037 0.00 0.00 34.37 2.41
35 36 7.918033 AGATCATGTGATTCTAGTTCGTTACAG 59.082 37.037 0.00 0.00 34.37 2.74
36 37 7.153217 TCATGTGATTCTAGTTCGTTACAGA 57.847 36.000 0.00 0.00 0.00 3.41
37 38 7.251281 TCATGTGATTCTAGTTCGTTACAGAG 58.749 38.462 0.00 0.00 0.00 3.35
38 39 5.950883 TGTGATTCTAGTTCGTTACAGAGG 58.049 41.667 0.00 0.00 0.00 3.69
39 40 5.105877 TGTGATTCTAGTTCGTTACAGAGGG 60.106 44.000 0.00 0.00 0.00 4.30
40 41 4.401519 TGATTCTAGTTCGTTACAGAGGGG 59.598 45.833 0.00 0.00 0.00 4.79
41 42 3.446442 TCTAGTTCGTTACAGAGGGGT 57.554 47.619 0.00 0.00 0.00 4.95
42 43 3.771216 TCTAGTTCGTTACAGAGGGGTT 58.229 45.455 0.00 0.00 0.00 4.11
43 44 3.760684 TCTAGTTCGTTACAGAGGGGTTC 59.239 47.826 0.00 0.00 0.00 3.62
44 45 2.322658 AGTTCGTTACAGAGGGGTTCA 58.677 47.619 0.00 0.00 0.00 3.18
45 46 2.904434 AGTTCGTTACAGAGGGGTTCAT 59.096 45.455 0.00 0.00 0.00 2.57
46 47 3.056035 AGTTCGTTACAGAGGGGTTCATC 60.056 47.826 0.00 0.00 0.00 2.92
47 48 1.475280 TCGTTACAGAGGGGTTCATCG 59.525 52.381 0.00 0.00 0.00 3.84
48 49 1.475280 CGTTACAGAGGGGTTCATCGA 59.525 52.381 0.00 0.00 0.00 3.59
49 50 2.734492 CGTTACAGAGGGGTTCATCGAC 60.734 54.545 0.00 0.00 0.00 4.20
50 51 2.225382 TACAGAGGGGTTCATCGACA 57.775 50.000 0.00 0.00 0.00 4.35
51 52 1.573108 ACAGAGGGGTTCATCGACAT 58.427 50.000 0.00 0.00 0.00 3.06
52 53 1.482593 ACAGAGGGGTTCATCGACATC 59.517 52.381 0.00 0.00 0.00 3.06
53 54 1.482182 CAGAGGGGTTCATCGACATCA 59.518 52.381 0.00 0.00 0.00 3.07
54 55 2.103771 CAGAGGGGTTCATCGACATCAT 59.896 50.000 0.00 0.00 0.00 2.45
55 56 2.103771 AGAGGGGTTCATCGACATCATG 59.896 50.000 0.00 0.00 0.00 3.07
56 57 1.141657 AGGGGTTCATCGACATCATGG 59.858 52.381 0.00 0.00 0.00 3.66
57 58 1.134098 GGGGTTCATCGACATCATGGT 60.134 52.381 0.00 0.00 0.00 3.55
58 59 2.643551 GGGTTCATCGACATCATGGTT 58.356 47.619 0.00 0.00 0.00 3.67
59 60 3.016736 GGGTTCATCGACATCATGGTTT 58.983 45.455 0.00 0.00 0.00 3.27
60 61 4.196193 GGGTTCATCGACATCATGGTTTA 58.804 43.478 0.00 0.00 0.00 2.01
61 62 4.821805 GGGTTCATCGACATCATGGTTTAT 59.178 41.667 0.00 0.00 0.00 1.40
62 63 5.277974 GGGTTCATCGACATCATGGTTTATG 60.278 44.000 0.00 0.00 38.17 1.90
63 64 5.207768 GTTCATCGACATCATGGTTTATGC 58.792 41.667 0.00 0.00 36.70 3.14
64 65 3.494251 TCATCGACATCATGGTTTATGCG 59.506 43.478 0.00 0.00 36.70 4.73
65 66 2.209273 TCGACATCATGGTTTATGCGG 58.791 47.619 0.00 0.00 36.70 5.69
66 67 2.159028 TCGACATCATGGTTTATGCGGA 60.159 45.455 0.00 0.00 36.70 5.54
67 68 2.032894 CGACATCATGGTTTATGCGGAC 60.033 50.000 0.00 0.00 36.70 4.79
68 69 2.290641 GACATCATGGTTTATGCGGACC 59.709 50.000 0.00 0.00 36.70 4.46
69 70 1.608590 CATCATGGTTTATGCGGACCC 59.391 52.381 0.00 0.00 36.70 4.46
70 71 0.916086 TCATGGTTTATGCGGACCCT 59.084 50.000 0.00 0.00 36.70 4.34
71 72 1.134220 TCATGGTTTATGCGGACCCTC 60.134 52.381 0.00 0.00 36.70 4.30
72 73 0.916086 ATGGTTTATGCGGACCCTCA 59.084 50.000 0.00 0.00 34.99 3.86
73 74 0.916086 TGGTTTATGCGGACCCTCAT 59.084 50.000 0.00 0.00 34.99 2.90
74 75 1.308998 GGTTTATGCGGACCCTCATG 58.691 55.000 2.01 0.00 0.00 3.07
75 76 1.408266 GGTTTATGCGGACCCTCATGT 60.408 52.381 2.01 0.00 0.00 3.21
76 77 2.158871 GGTTTATGCGGACCCTCATGTA 60.159 50.000 2.01 0.00 0.00 2.29
77 78 3.131396 GTTTATGCGGACCCTCATGTAG 58.869 50.000 2.01 0.00 0.00 2.74
78 79 2.082140 TATGCGGACCCTCATGTAGT 57.918 50.000 2.01 0.00 0.00 2.73
79 80 0.753262 ATGCGGACCCTCATGTAGTC 59.247 55.000 0.00 0.00 0.00 2.59
80 81 1.327690 TGCGGACCCTCATGTAGTCC 61.328 60.000 16.65 16.65 45.49 3.85
81 82 2.029307 GCGGACCCTCATGTAGTCCC 62.029 65.000 19.15 11.92 46.08 4.46
82 83 1.400530 CGGACCCTCATGTAGTCCCC 61.401 65.000 19.15 4.96 46.08 4.81
83 84 1.054978 GGACCCTCATGTAGTCCCCC 61.055 65.000 16.09 0.00 43.60 5.40
99 100 0.556258 CCCCCAAATCCTACCTTCCC 59.444 60.000 0.00 0.00 0.00 3.97
100 101 1.608425 CCCCAAATCCTACCTTCCCT 58.392 55.000 0.00 0.00 0.00 4.20
101 102 2.634009 CCCCCAAATCCTACCTTCCCTA 60.634 54.545 0.00 0.00 0.00 3.53
102 103 3.336676 CCCCAAATCCTACCTTCCCTAT 58.663 50.000 0.00 0.00 0.00 2.57
103 104 3.330998 CCCCAAATCCTACCTTCCCTATC 59.669 52.174 0.00 0.00 0.00 2.08
104 105 3.330998 CCCAAATCCTACCTTCCCTATCC 59.669 52.174 0.00 0.00 0.00 2.59
105 106 3.008049 CCAAATCCTACCTTCCCTATCCG 59.992 52.174 0.00 0.00 0.00 4.18
106 107 1.939980 ATCCTACCTTCCCTATCCGC 58.060 55.000 0.00 0.00 0.00 5.54
107 108 0.559205 TCCTACCTTCCCTATCCGCA 59.441 55.000 0.00 0.00 0.00 5.69
108 109 1.149288 TCCTACCTTCCCTATCCGCAT 59.851 52.381 0.00 0.00 0.00 4.73
109 110 1.550976 CCTACCTTCCCTATCCGCATC 59.449 57.143 0.00 0.00 0.00 3.91
110 111 2.530701 CTACCTTCCCTATCCGCATCT 58.469 52.381 0.00 0.00 0.00 2.90
111 112 2.696526 ACCTTCCCTATCCGCATCTA 57.303 50.000 0.00 0.00 0.00 1.98
112 113 2.249139 ACCTTCCCTATCCGCATCTAC 58.751 52.381 0.00 0.00 0.00 2.59
113 114 1.550976 CCTTCCCTATCCGCATCTACC 59.449 57.143 0.00 0.00 0.00 3.18
114 115 2.530701 CTTCCCTATCCGCATCTACCT 58.469 52.381 0.00 0.00 0.00 3.08
115 116 2.217510 TCCCTATCCGCATCTACCTC 57.782 55.000 0.00 0.00 0.00 3.85
116 117 1.187087 CCCTATCCGCATCTACCTCC 58.813 60.000 0.00 0.00 0.00 4.30
117 118 1.550179 CCCTATCCGCATCTACCTCCA 60.550 57.143 0.00 0.00 0.00 3.86
118 119 1.821753 CCTATCCGCATCTACCTCCAG 59.178 57.143 0.00 0.00 0.00 3.86
119 120 2.555448 CCTATCCGCATCTACCTCCAGA 60.555 54.545 0.00 0.00 0.00 3.86
120 121 2.088104 ATCCGCATCTACCTCCAGAA 57.912 50.000 0.00 0.00 0.00 3.02
121 122 1.112113 TCCGCATCTACCTCCAGAAC 58.888 55.000 0.00 0.00 0.00 3.01
122 123 0.105039 CCGCATCTACCTCCAGAACC 59.895 60.000 0.00 0.00 0.00 3.62
123 124 1.115467 CGCATCTACCTCCAGAACCT 58.885 55.000 0.00 0.00 0.00 3.50
124 125 1.482593 CGCATCTACCTCCAGAACCTT 59.517 52.381 0.00 0.00 0.00 3.50
125 126 2.693591 CGCATCTACCTCCAGAACCTTA 59.306 50.000 0.00 0.00 0.00 2.69
126 127 3.491104 CGCATCTACCTCCAGAACCTTAC 60.491 52.174 0.00 0.00 0.00 2.34
127 128 3.181464 GCATCTACCTCCAGAACCTTACC 60.181 52.174 0.00 0.00 0.00 2.85
128 129 3.839323 TCTACCTCCAGAACCTTACCA 57.161 47.619 0.00 0.00 0.00 3.25
129 130 4.136341 TCTACCTCCAGAACCTTACCAA 57.864 45.455 0.00 0.00 0.00 3.67
130 131 4.094476 TCTACCTCCAGAACCTTACCAAG 58.906 47.826 0.00 0.00 0.00 3.61
131 132 2.702748 ACCTCCAGAACCTTACCAAGT 58.297 47.619 0.00 0.00 0.00 3.16
132 133 3.053826 ACCTCCAGAACCTTACCAAGTT 58.946 45.455 0.00 0.00 0.00 2.66
133 134 3.072622 ACCTCCAGAACCTTACCAAGTTC 59.927 47.826 0.00 0.00 0.00 3.01
134 135 3.328050 CCTCCAGAACCTTACCAAGTTCT 59.672 47.826 0.00 0.00 36.70 3.01
135 136 4.530946 CCTCCAGAACCTTACCAAGTTCTA 59.469 45.833 5.18 0.00 34.79 2.10
136 137 5.479124 TCCAGAACCTTACCAAGTTCTAC 57.521 43.478 5.18 0.00 34.79 2.59
137 138 5.152934 TCCAGAACCTTACCAAGTTCTACT 58.847 41.667 5.18 0.00 34.79 2.57
138 139 5.245526 TCCAGAACCTTACCAAGTTCTACTC 59.754 44.000 5.18 0.00 34.79 2.59
139 140 5.480205 CAGAACCTTACCAAGTTCTACTCC 58.520 45.833 5.18 0.00 34.79 3.85
140 141 5.011738 CAGAACCTTACCAAGTTCTACTCCA 59.988 44.000 5.18 0.00 34.79 3.86
141 142 5.605488 AGAACCTTACCAAGTTCTACTCCAA 59.395 40.000 3.68 0.00 34.79 3.53
142 143 5.485209 ACCTTACCAAGTTCTACTCCAAG 57.515 43.478 0.00 0.00 0.00 3.61
143 144 4.254492 CCTTACCAAGTTCTACTCCAAGC 58.746 47.826 0.00 0.00 0.00 4.01
144 145 4.020128 CCTTACCAAGTTCTACTCCAAGCT 60.020 45.833 0.00 0.00 0.00 3.74
145 146 3.686916 ACCAAGTTCTACTCCAAGCTC 57.313 47.619 0.00 0.00 0.00 4.09
146 147 2.303311 ACCAAGTTCTACTCCAAGCTCC 59.697 50.000 0.00 0.00 0.00 4.70
147 148 2.355209 CCAAGTTCTACTCCAAGCTCCC 60.355 54.545 0.00 0.00 0.00 4.30
148 149 1.187087 AGTTCTACTCCAAGCTCCCG 58.813 55.000 0.00 0.00 0.00 5.14
149 150 1.183549 GTTCTACTCCAAGCTCCCGA 58.816 55.000 0.00 0.00 0.00 5.14
150 151 1.135333 GTTCTACTCCAAGCTCCCGAG 59.865 57.143 0.00 0.00 0.00 4.63
160 161 3.550656 CTCCCGAGCAACGTGTTC 58.449 61.111 0.00 0.00 40.78 3.18
161 162 1.300620 CTCCCGAGCAACGTGTTCA 60.301 57.895 0.00 0.00 40.78 3.18
162 163 0.878523 CTCCCGAGCAACGTGTTCAA 60.879 55.000 0.00 0.00 40.78 2.69
163 164 0.462225 TCCCGAGCAACGTGTTCAAA 60.462 50.000 0.00 0.00 40.78 2.69
164 165 0.041312 CCCGAGCAACGTGTTCAAAG 60.041 55.000 0.00 0.00 40.78 2.77
165 166 0.934496 CCGAGCAACGTGTTCAAAGA 59.066 50.000 0.00 0.00 40.78 2.52
166 167 1.531149 CCGAGCAACGTGTTCAAAGAT 59.469 47.619 0.00 0.00 40.78 2.40
167 168 2.563976 CGAGCAACGTGTTCAAAGATG 58.436 47.619 0.00 0.00 37.22 2.90
168 169 2.310577 GAGCAACGTGTTCAAAGATGC 58.689 47.619 0.00 0.00 36.52 3.91
169 170 1.044725 GCAACGTGTTCAAAGATGCG 58.955 50.000 0.00 0.00 0.00 4.73
170 171 1.044725 CAACGTGTTCAAAGATGCGC 58.955 50.000 0.00 0.00 0.00 6.09
171 172 0.660488 AACGTGTTCAAAGATGCGCA 59.340 45.000 14.96 14.96 0.00 6.09
172 173 0.041312 ACGTGTTCAAAGATGCGCAC 60.041 50.000 14.90 7.11 0.00 5.34
173 174 0.725784 CGTGTTCAAAGATGCGCACC 60.726 55.000 14.90 0.66 31.61 5.01
174 175 0.387239 GTGTTCAAAGATGCGCACCC 60.387 55.000 14.90 8.08 0.00 4.61
175 176 0.821301 TGTTCAAAGATGCGCACCCA 60.821 50.000 14.90 0.00 0.00 4.51
176 177 0.109597 GTTCAAAGATGCGCACCCAG 60.110 55.000 14.90 1.67 0.00 4.45
177 178 0.250684 TTCAAAGATGCGCACCCAGA 60.251 50.000 14.90 4.55 0.00 3.86
178 179 0.035152 TCAAAGATGCGCACCCAGAT 60.035 50.000 14.90 0.00 0.00 2.90
179 180 0.379669 CAAAGATGCGCACCCAGATC 59.620 55.000 14.90 5.00 0.00 2.75
180 181 1.091771 AAAGATGCGCACCCAGATCG 61.092 55.000 14.90 0.00 0.00 3.69
181 182 2.930385 AAGATGCGCACCCAGATCGG 62.930 60.000 14.90 0.00 0.00 4.18
185 186 3.274586 CGCACCCAGATCGGCATG 61.275 66.667 0.00 0.00 0.00 4.06
186 187 2.124570 GCACCCAGATCGGCATGT 60.125 61.111 0.00 0.00 0.00 3.21
187 188 2.475466 GCACCCAGATCGGCATGTG 61.475 63.158 0.00 4.75 0.00 3.21
188 189 1.820906 CACCCAGATCGGCATGTGG 60.821 63.158 0.00 6.25 42.22 4.17
190 191 2.903855 CCAGATCGGCATGTGGGC 60.904 66.667 0.00 0.00 39.41 5.36
205 206 4.773117 GGCGACCTCGACGTCACC 62.773 72.222 17.16 9.96 43.02 4.02
206 207 4.773117 GCGACCTCGACGTCACCC 62.773 72.222 17.16 0.00 43.02 4.61
207 208 4.456253 CGACCTCGACGTCACCCG 62.456 72.222 17.16 7.34 43.02 5.28
208 209 4.112341 GACCTCGACGTCACCCGG 62.112 72.222 17.16 11.59 42.24 5.73
209 210 4.962836 ACCTCGACGTCACCCGGT 62.963 66.667 17.16 12.23 42.24 5.28
210 211 4.112341 CCTCGACGTCACCCGGTC 62.112 72.222 17.16 0.00 42.24 4.79
211 212 4.456253 CTCGACGTCACCCGGTCG 62.456 72.222 17.16 7.20 42.24 4.79
212 213 4.986645 TCGACGTCACCCGGTCGA 62.987 66.667 17.16 11.68 42.44 4.20
213 214 4.456253 CGACGTCACCCGGTCGAG 62.456 72.222 17.16 0.00 40.23 4.04
214 215 4.773117 GACGTCACCCGGTCGAGC 62.773 72.222 11.55 4.06 42.24 5.03
225 226 4.819761 GTCGAGCGCTGCCATCCA 62.820 66.667 18.48 0.00 0.00 3.41
226 227 4.819761 TCGAGCGCTGCCATCCAC 62.820 66.667 18.48 0.00 0.00 4.02
228 229 4.479993 GAGCGCTGCCATCCACCT 62.480 66.667 18.48 0.00 0.00 4.00
229 230 4.479993 AGCGCTGCCATCCACCTC 62.480 66.667 10.39 0.00 0.00 3.85
231 232 4.100084 CGCTGCCATCCACCTCCA 62.100 66.667 0.00 0.00 0.00 3.86
232 233 2.439156 GCTGCCATCCACCTCCAC 60.439 66.667 0.00 0.00 0.00 4.02
233 234 2.273449 CTGCCATCCACCTCCACC 59.727 66.667 0.00 0.00 0.00 4.61
234 235 2.531428 TGCCATCCACCTCCACCA 60.531 61.111 0.00 0.00 0.00 4.17
235 236 1.929860 CTGCCATCCACCTCCACCAT 61.930 60.000 0.00 0.00 0.00 3.55
236 237 1.454479 GCCATCCACCTCCACCATG 60.454 63.158 0.00 0.00 0.00 3.66
237 238 1.925285 GCCATCCACCTCCACCATGA 61.925 60.000 0.00 0.00 0.00 3.07
238 239 0.182061 CCATCCACCTCCACCATGAG 59.818 60.000 0.00 0.00 0.00 2.90
244 245 4.972875 CTCCACCATGAGGAAGGC 57.027 61.111 8.03 0.00 38.69 4.35
245 246 1.993653 CTCCACCATGAGGAAGGCA 59.006 57.895 8.03 0.00 38.69 4.75
246 247 0.549950 CTCCACCATGAGGAAGGCAT 59.450 55.000 8.03 0.00 38.69 4.40
247 248 0.548031 TCCACCATGAGGAAGGCATC 59.452 55.000 4.58 0.00 38.69 3.91
248 249 0.816825 CCACCATGAGGAAGGCATCG 60.817 60.000 0.00 0.00 38.69 3.84
249 250 1.153086 ACCATGAGGAAGGCATCGC 60.153 57.895 0.00 0.00 38.69 4.58
250 251 1.895707 CCATGAGGAAGGCATCGCC 60.896 63.158 0.00 0.00 43.55 5.54
259 260 4.386413 GGCATCGCCCTTGATAGG 57.614 61.111 0.00 0.00 44.06 2.57
260 261 1.754745 GGCATCGCCCTTGATAGGA 59.245 57.895 0.00 0.00 45.05 2.94
261 262 0.326264 GGCATCGCCCTTGATAGGAT 59.674 55.000 0.00 0.00 45.05 3.24
262 263 1.271597 GGCATCGCCCTTGATAGGATT 60.272 52.381 0.00 0.00 45.05 3.01
263 264 2.079925 GCATCGCCCTTGATAGGATTC 58.920 52.381 0.00 0.00 45.05 2.52
264 265 2.289945 GCATCGCCCTTGATAGGATTCT 60.290 50.000 0.00 0.00 45.05 2.40
265 266 3.808618 GCATCGCCCTTGATAGGATTCTT 60.809 47.826 0.00 0.00 45.05 2.52
266 267 4.563580 GCATCGCCCTTGATAGGATTCTTA 60.564 45.833 0.00 0.00 45.05 2.10
267 268 4.602340 TCGCCCTTGATAGGATTCTTAC 57.398 45.455 0.00 0.00 45.05 2.34
268 269 3.964688 TCGCCCTTGATAGGATTCTTACA 59.035 43.478 0.00 0.00 45.05 2.41
269 270 4.058817 CGCCCTTGATAGGATTCTTACAC 58.941 47.826 0.00 0.00 45.05 2.90
270 271 4.442893 CGCCCTTGATAGGATTCTTACACA 60.443 45.833 0.00 0.00 45.05 3.72
271 272 5.437060 GCCCTTGATAGGATTCTTACACAA 58.563 41.667 0.00 0.00 45.05 3.33
272 273 5.885912 GCCCTTGATAGGATTCTTACACAAA 59.114 40.000 0.00 0.00 45.05 2.83
273 274 6.377146 GCCCTTGATAGGATTCTTACACAAAA 59.623 38.462 0.00 0.00 45.05 2.44
274 275 7.068716 GCCCTTGATAGGATTCTTACACAAAAT 59.931 37.037 0.00 0.00 45.05 1.82
275 276 8.971073 CCCTTGATAGGATTCTTACACAAAATT 58.029 33.333 0.00 0.00 45.05 1.82
282 283 7.896811 AGGATTCTTACACAAAATTTTCCTCC 58.103 34.615 0.00 0.00 0.00 4.30
283 284 7.508977 AGGATTCTTACACAAAATTTTCCTCCA 59.491 33.333 0.00 0.00 0.00 3.86
284 285 8.147704 GGATTCTTACACAAAATTTTCCTCCAA 58.852 33.333 0.00 0.00 0.00 3.53
285 286 9.541143 GATTCTTACACAAAATTTTCCTCCAAA 57.459 29.630 0.00 0.00 0.00 3.28
286 287 8.940768 TTCTTACACAAAATTTTCCTCCAAAG 57.059 30.769 0.00 1.54 0.00 2.77
287 288 8.073467 TCTTACACAAAATTTTCCTCCAAAGT 57.927 30.769 0.00 0.00 0.00 2.66
288 289 8.194769 TCTTACACAAAATTTTCCTCCAAAGTC 58.805 33.333 0.00 0.00 0.00 3.01
289 290 5.670485 ACACAAAATTTTCCTCCAAAGTCC 58.330 37.500 0.00 0.00 0.00 3.85
290 291 5.425217 ACACAAAATTTTCCTCCAAAGTCCT 59.575 36.000 0.00 0.00 0.00 3.85
291 292 6.070251 ACACAAAATTTTCCTCCAAAGTCCTT 60.070 34.615 0.00 0.00 0.00 3.36
292 293 6.823182 CACAAAATTTTCCTCCAAAGTCCTTT 59.177 34.615 0.00 0.00 0.00 3.11
293 294 6.823182 ACAAAATTTTCCTCCAAAGTCCTTTG 59.177 34.615 11.89 11.89 46.93 2.77
312 313 6.759497 CTTTGGAAGGAAGGAATTCGTATT 57.241 37.500 0.22 0.00 0.00 1.89
313 314 7.158099 CTTTGGAAGGAAGGAATTCGTATTT 57.842 36.000 0.22 0.00 0.00 1.40
314 315 6.753107 TTGGAAGGAAGGAATTCGTATTTC 57.247 37.500 0.22 6.01 0.00 2.17
315 316 6.062258 TGGAAGGAAGGAATTCGTATTTCT 57.938 37.500 0.22 0.00 30.44 2.52
316 317 5.880332 TGGAAGGAAGGAATTCGTATTTCTG 59.120 40.000 0.22 0.00 29.68 3.02
317 318 5.880887 GGAAGGAAGGAATTCGTATTTCTGT 59.119 40.000 0.22 0.00 29.68 3.41
318 319 7.046033 GGAAGGAAGGAATTCGTATTTCTGTA 58.954 38.462 0.22 0.00 29.68 2.74
319 320 7.715686 GGAAGGAAGGAATTCGTATTTCTGTAT 59.284 37.037 0.22 0.00 29.68 2.29
320 321 9.110502 GAAGGAAGGAATTCGTATTTCTGTATT 57.889 33.333 0.22 0.00 29.68 1.89
321 322 8.438676 AGGAAGGAATTCGTATTTCTGTATTG 57.561 34.615 0.22 0.00 29.68 1.90
322 323 7.499232 AGGAAGGAATTCGTATTTCTGTATTGG 59.501 37.037 0.22 0.00 29.68 3.16
323 324 7.497909 GGAAGGAATTCGTATTTCTGTATTGGA 59.502 37.037 0.22 0.00 29.68 3.53
324 325 8.980481 AAGGAATTCGTATTTCTGTATTGGAT 57.020 30.769 0.22 0.00 29.68 3.41
325 326 8.980481 AGGAATTCGTATTTCTGTATTGGATT 57.020 30.769 0.00 0.00 27.97 3.01
326 327 8.840321 AGGAATTCGTATTTCTGTATTGGATTG 58.160 33.333 0.00 0.00 27.97 2.67
327 328 8.836413 GGAATTCGTATTTCTGTATTGGATTGA 58.164 33.333 0.00 0.00 0.00 2.57
331 332 8.956533 TCGTATTTCTGTATTGGATTGATTCA 57.043 30.769 0.00 0.00 0.00 2.57
332 333 9.559732 TCGTATTTCTGTATTGGATTGATTCAT 57.440 29.630 0.00 0.00 0.00 2.57
339 340 9.730705 TCTGTATTGGATTGATTCATATCCTTC 57.269 33.333 19.59 12.17 40.80 3.46
340 341 9.511272 CTGTATTGGATTGATTCATATCCTTCA 57.489 33.333 19.59 14.36 40.80 3.02
341 342 9.288576 TGTATTGGATTGATTCATATCCTTCAC 57.711 33.333 19.59 15.72 40.80 3.18
342 343 6.866010 TTGGATTGATTCATATCCTTCACG 57.134 37.500 19.59 0.00 40.80 4.35
343 344 6.173427 TGGATTGATTCATATCCTTCACGA 57.827 37.500 19.59 5.21 40.80 4.35
344 345 6.591001 TGGATTGATTCATATCCTTCACGAA 58.409 36.000 19.59 0.00 40.80 3.85
345 346 7.053498 TGGATTGATTCATATCCTTCACGAAA 58.947 34.615 19.59 4.27 40.80 3.46
346 347 7.555914 TGGATTGATTCATATCCTTCACGAAAA 59.444 33.333 19.59 3.81 40.80 2.29
347 348 8.571336 GGATTGATTCATATCCTTCACGAAAAT 58.429 33.333 15.15 0.00 37.83 1.82
350 351 9.830975 TTGATTCATATCCTTCACGAAAATAGA 57.169 29.630 0.00 0.00 0.00 1.98
351 352 9.481340 TGATTCATATCCTTCACGAAAATAGAG 57.519 33.333 0.00 0.00 0.00 2.43
352 353 9.698309 GATTCATATCCTTCACGAAAATAGAGA 57.302 33.333 0.00 0.00 0.00 3.10
452 453 1.082756 GTTTCACCGCTCTTGCACG 60.083 57.895 0.00 0.00 39.64 5.34
477 479 4.602340 AGTGATCCGTTGTTTGAGTACT 57.398 40.909 0.00 0.00 0.00 2.73
478 480 4.307432 AGTGATCCGTTGTTTGAGTACTG 58.693 43.478 0.00 0.00 0.00 2.74
479 481 4.056050 GTGATCCGTTGTTTGAGTACTGT 58.944 43.478 0.00 0.00 0.00 3.55
480 482 4.150098 GTGATCCGTTGTTTGAGTACTGTC 59.850 45.833 0.00 0.00 0.00 3.51
484 510 2.140717 GTTGTTTGAGTACTGTCCGGG 58.859 52.381 0.00 0.00 0.00 5.73
514 540 4.821589 GCTTGTCCTCTCCGGGCG 62.822 72.222 0.00 0.00 41.63 6.13
540 566 0.674895 GCTTCTCGGAACCATGCAGT 60.675 55.000 0.00 0.00 0.00 4.40
549 575 0.537143 AACCATGCAGTGCGAAAGGA 60.537 50.000 18.12 0.00 0.00 3.36
890 987 3.966006 ACCTGAGCTACATCATCACTCAT 59.034 43.478 0.00 0.00 36.82 2.90
911 1011 0.463204 CATCGCTCACTCACCCTCAT 59.537 55.000 0.00 0.00 0.00 2.90
931 1031 2.047844 CCACACTCCCACTCTGCG 60.048 66.667 0.00 0.00 0.00 5.18
951 1056 2.959707 CGACCACCTTATCTAGCTCCTT 59.040 50.000 0.00 0.00 0.00 3.36
1026 1131 4.100084 CCATCGAGGTGCAGGGCA 62.100 66.667 0.00 0.00 35.60 5.36
1027 1132 2.513204 CATCGAGGTGCAGGGCAG 60.513 66.667 0.00 0.00 40.08 4.85
1111 1216 0.801067 CGCTGCTTCAGGTACGTACC 60.801 60.000 33.16 33.16 46.82 3.34
1129 1234 3.213249 ACCTATAGCTTACATACGCGC 57.787 47.619 5.73 0.00 0.00 6.86
1133 1238 0.655337 TAGCTTACATACGCGCGTCG 60.655 55.000 41.35 32.02 45.38 5.12
1144 1249 4.678269 CGCGTCGTGTCGTGTCCT 62.678 66.667 0.00 0.00 36.71 3.85
1146 1251 2.944429 CGTCGTGTCGTGTCCTCT 59.056 61.111 0.00 0.00 0.00 3.69
1147 1252 1.281960 CGTCGTGTCGTGTCCTCTT 59.718 57.895 0.00 0.00 0.00 2.85
1155 1260 2.367241 TGTCGTGTCCTCTTTCCATCAA 59.633 45.455 0.00 0.00 0.00 2.57
1187 1298 1.531423 CCTGATCCATGGCTGTATGC 58.469 55.000 6.96 0.00 41.94 3.14
1189 1300 0.469494 TGATCCATGGCTGTATGCGT 59.531 50.000 6.96 0.00 44.05 5.24
1192 1303 0.747644 TCCATGGCTGTATGCGTTGG 60.748 55.000 6.96 0.00 44.05 3.77
1193 1304 1.727511 CCATGGCTGTATGCGTTGGG 61.728 60.000 0.00 0.00 44.05 4.12
1194 1305 2.120909 ATGGCTGTATGCGTTGGGC 61.121 57.895 0.00 0.00 44.05 5.36
1297 1408 1.004918 GAAGTACTGCGGGCTGTGT 60.005 57.895 12.65 0.00 0.00 3.72
1409 1520 4.740822 GGCCCAAGTGCCCGTGAT 62.741 66.667 0.00 0.00 46.11 3.06
1411 1522 2.438434 CCCAAGTGCCCGTGATCC 60.438 66.667 0.00 0.00 0.00 3.36
1419 1538 3.138798 CCCGTGATCCTCGTCGGT 61.139 66.667 0.00 0.00 41.17 4.69
1421 1540 2.022902 CGTGATCCTCGTCGGTCG 59.977 66.667 0.00 0.00 41.41 4.79
1450 1576 2.671963 GGACCACCGGCTTCAACC 60.672 66.667 0.00 0.00 0.00 3.77
1451 1577 2.671963 GACCACCGGCTTCAACCC 60.672 66.667 0.00 0.00 0.00 4.11
1452 1578 4.280019 ACCACCGGCTTCAACCCC 62.280 66.667 0.00 0.00 0.00 4.95
1455 1581 3.264845 ACCGGCTTCAACCCCCAT 61.265 61.111 0.00 0.00 0.00 4.00
1459 1585 1.632018 CGGCTTCAACCCCCATCCTA 61.632 60.000 0.00 0.00 0.00 2.94
1461 1592 0.106669 GCTTCAACCCCCATCCTACC 60.107 60.000 0.00 0.00 0.00 3.18
1462 1593 0.180406 CTTCAACCCCCATCCTACCG 59.820 60.000 0.00 0.00 0.00 4.02
1463 1594 0.252789 TTCAACCCCCATCCTACCGA 60.253 55.000 0.00 0.00 0.00 4.69
1464 1595 0.689745 TCAACCCCCATCCTACCGAG 60.690 60.000 0.00 0.00 0.00 4.63
1473 1604 2.019249 CATCCTACCGAGTACCGACAA 58.981 52.381 5.46 0.00 41.76 3.18
1479 1610 2.783135 ACCGAGTACCGACAAGAGTAA 58.217 47.619 5.46 0.00 41.76 2.24
1481 1612 3.128242 ACCGAGTACCGACAAGAGTAATG 59.872 47.826 5.46 0.00 41.76 1.90
1484 1615 3.097614 AGTACCGACAAGAGTAATGGCT 58.902 45.455 0.00 0.00 0.00 4.75
1485 1616 2.386661 ACCGACAAGAGTAATGGCTG 57.613 50.000 0.00 0.00 0.00 4.85
1492 1637 5.419542 GACAAGAGTAATGGCTGTGTGATA 58.580 41.667 0.00 0.00 0.00 2.15
1513 1658 1.874915 GGACGCGCGTGCTTATGTA 60.875 57.895 41.14 0.00 39.65 2.29
1527 1672 3.375299 GCTTATGTAACTTCCCTGTGCTG 59.625 47.826 0.00 0.00 0.00 4.41
1528 1673 4.579869 CTTATGTAACTTCCCTGTGCTGT 58.420 43.478 0.00 0.00 0.00 4.40
1529 1674 2.254546 TGTAACTTCCCTGTGCTGTG 57.745 50.000 0.00 0.00 0.00 3.66
1530 1675 1.488812 TGTAACTTCCCTGTGCTGTGT 59.511 47.619 0.00 0.00 0.00 3.72
1542 1687 0.531753 TGCTGTGTGCTCGTGCTAAA 60.532 50.000 11.19 0.00 43.37 1.85
1550 1695 4.569162 GTGTGCTCGTGCTAAATATTGGTA 59.431 41.667 11.19 0.00 40.48 3.25
1555 1700 7.330946 GTGCTCGTGCTAAATATTGGTATGATA 59.669 37.037 11.19 0.00 40.48 2.15
1560 1705 8.795341 CGTGCTAAATATTGGTATGATACGTAG 58.205 37.037 0.08 0.00 0.00 3.51
1561 1706 9.850628 GTGCTAAATATTGGTATGATACGTAGA 57.149 33.333 0.08 0.00 0.00 2.59
1562 1707 9.850628 TGCTAAATATTGGTATGATACGTAGAC 57.149 33.333 0.08 0.00 0.00 2.59
1563 1708 9.007252 GCTAAATATTGGTATGATACGTAGACG 57.993 37.037 0.08 0.00 46.33 4.18
1583 1790 3.075884 CGTACTCTACTAGCTGGGATCC 58.924 54.545 1.92 1.92 0.00 3.36
1616 1823 5.629435 GTGAGTTTGCTGCCTGTAAATTAAC 59.371 40.000 0.00 0.00 33.14 2.01
1617 1824 5.300539 TGAGTTTGCTGCCTGTAAATTAACA 59.699 36.000 0.00 0.00 33.14 2.41
1619 1826 6.215845 AGTTTGCTGCCTGTAAATTAACAAG 58.784 36.000 0.00 0.00 33.14 3.16
1620 1827 5.782893 TTGCTGCCTGTAAATTAACAAGT 57.217 34.783 0.00 0.00 0.00 3.16
1621 1828 5.119931 TGCTGCCTGTAAATTAACAAGTG 57.880 39.130 0.00 0.00 0.00 3.16
1622 1829 4.582656 TGCTGCCTGTAAATTAACAAGTGT 59.417 37.500 0.00 0.00 0.00 3.55
1645 1852 1.067071 GTGTGGCTACCTGTGTACTCC 60.067 57.143 0.00 0.00 0.00 3.85
1646 1853 0.535797 GTGGCTACCTGTGTACTCCC 59.464 60.000 0.00 0.00 0.00 4.30
1647 1854 0.115547 TGGCTACCTGTGTACTCCCA 59.884 55.000 0.00 0.00 0.00 4.37
1648 1855 1.273609 TGGCTACCTGTGTACTCCCAT 60.274 52.381 0.00 0.00 0.00 4.00
1659 1866 2.027561 TGTACTCCCATGTGGTTGTAGC 60.028 50.000 0.00 0.00 34.77 3.58
1803 2015 5.503031 CGAGCTTACAAGTAGCAATGGAATG 60.503 44.000 0.00 0.00 0.00 2.67
1804 2016 4.641989 AGCTTACAAGTAGCAATGGAATGG 59.358 41.667 0.00 0.00 0.00 3.16
1825 2037 2.063266 TCATGTCGCCGTCTTTGTAAC 58.937 47.619 0.00 0.00 0.00 2.50
1826 2038 2.066262 CATGTCGCCGTCTTTGTAACT 58.934 47.619 0.00 0.00 0.00 2.24
1827 2039 2.228138 TGTCGCCGTCTTTGTAACTT 57.772 45.000 0.00 0.00 0.00 2.66
1828 2040 2.553086 TGTCGCCGTCTTTGTAACTTT 58.447 42.857 0.00 0.00 0.00 2.66
1829 2041 2.285756 TGTCGCCGTCTTTGTAACTTTG 59.714 45.455 0.00 0.00 0.00 2.77
1830 2042 2.286025 GTCGCCGTCTTTGTAACTTTGT 59.714 45.455 0.00 0.00 0.00 2.83
1831 2043 3.490526 GTCGCCGTCTTTGTAACTTTGTA 59.509 43.478 0.00 0.00 0.00 2.41
1832 2044 4.025813 GTCGCCGTCTTTGTAACTTTGTAA 60.026 41.667 0.00 0.00 0.00 2.41
1833 2045 4.209703 TCGCCGTCTTTGTAACTTTGTAAG 59.790 41.667 0.00 0.00 0.00 2.34
1834 2046 4.025480 CGCCGTCTTTGTAACTTTGTAAGT 60.025 41.667 0.00 0.00 45.46 2.24
1835 2047 5.202640 GCCGTCTTTGTAACTTTGTAAGTG 58.797 41.667 0.00 0.00 41.91 3.16
1836 2048 5.202640 CCGTCTTTGTAACTTTGTAAGTGC 58.797 41.667 0.00 0.00 41.91 4.40
1837 2049 5.202640 CGTCTTTGTAACTTTGTAAGTGCC 58.797 41.667 0.00 0.00 41.91 5.01
1838 2050 5.220700 CGTCTTTGTAACTTTGTAAGTGCCA 60.221 40.000 0.00 0.00 41.91 4.92
1839 2051 6.512741 CGTCTTTGTAACTTTGTAAGTGCCAT 60.513 38.462 0.00 0.00 41.91 4.40
1840 2052 6.856426 GTCTTTGTAACTTTGTAAGTGCCATC 59.144 38.462 0.00 0.00 41.91 3.51
1841 2053 5.351233 TTGTAACTTTGTAAGTGCCATCG 57.649 39.130 0.00 0.00 41.91 3.84
1842 2054 4.382291 TGTAACTTTGTAAGTGCCATCGT 58.618 39.130 0.00 0.00 41.91 3.73
1843 2055 3.896648 AACTTTGTAAGTGCCATCGTG 57.103 42.857 0.00 0.00 41.91 4.35
1844 2056 1.535462 ACTTTGTAAGTGCCATCGTGC 59.465 47.619 0.00 0.00 41.01 5.34
1845 2057 1.535028 CTTTGTAAGTGCCATCGTGCA 59.465 47.619 0.00 0.00 39.37 4.57
1846 2058 1.819928 TTGTAAGTGCCATCGTGCAT 58.180 45.000 0.00 0.00 44.30 3.96
1880 2092 5.888161 CCTAATGGAGCAGTTGGTAATCTTT 59.112 40.000 0.00 0.00 34.57 2.52
2032 2247 2.358939 AACACTACGGTTCATCGACC 57.641 50.000 0.00 0.00 36.31 4.79
2260 2485 3.334604 CAGGGAAGCCATGGCCTA 58.665 61.111 33.14 0.00 43.17 3.93
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 0.256752 TCACATGATCTGGCCAAGGG 59.743 55.000 7.01 0.00 0.00 3.95
1 2 2.359981 ATCACATGATCTGGCCAAGG 57.640 50.000 7.01 0.00 0.00 3.61
3 4 3.657398 AGAATCACATGATCTGGCCAA 57.343 42.857 7.01 0.00 32.75 4.52
5 6 4.348863 ACTAGAATCACATGATCTGGCC 57.651 45.455 0.00 0.00 32.75 5.36
7 8 5.595885 ACGAACTAGAATCACATGATCTGG 58.404 41.667 0.00 2.30 32.75 3.86
8 9 7.702348 TGTAACGAACTAGAATCACATGATCTG 59.298 37.037 0.00 0.00 32.75 2.90
9 10 7.772166 TGTAACGAACTAGAATCACATGATCT 58.228 34.615 0.00 0.00 32.75 2.75
10 11 7.915923 TCTGTAACGAACTAGAATCACATGATC 59.084 37.037 0.00 0.00 32.75 2.92
11 12 7.772166 TCTGTAACGAACTAGAATCACATGAT 58.228 34.615 0.00 0.00 36.07 2.45
12 13 7.153217 TCTGTAACGAACTAGAATCACATGA 57.847 36.000 0.00 0.00 0.00 3.07
13 14 6.473778 CCTCTGTAACGAACTAGAATCACATG 59.526 42.308 0.00 0.00 0.00 3.21
14 15 6.405953 CCCTCTGTAACGAACTAGAATCACAT 60.406 42.308 0.00 0.00 0.00 3.21
15 16 5.105877 CCCTCTGTAACGAACTAGAATCACA 60.106 44.000 0.00 0.00 0.00 3.58
16 17 5.341617 CCCTCTGTAACGAACTAGAATCAC 58.658 45.833 0.00 0.00 0.00 3.06
17 18 4.401519 CCCCTCTGTAACGAACTAGAATCA 59.598 45.833 0.00 0.00 0.00 2.57
18 19 4.401837 ACCCCTCTGTAACGAACTAGAATC 59.598 45.833 0.00 0.00 0.00 2.52
19 20 4.351127 ACCCCTCTGTAACGAACTAGAAT 58.649 43.478 0.00 0.00 0.00 2.40
20 21 3.771216 ACCCCTCTGTAACGAACTAGAA 58.229 45.455 0.00 0.00 0.00 2.10
21 22 3.446442 ACCCCTCTGTAACGAACTAGA 57.554 47.619 0.00 0.00 0.00 2.43
22 23 3.508793 TGAACCCCTCTGTAACGAACTAG 59.491 47.826 0.00 0.00 0.00 2.57
23 24 3.499338 TGAACCCCTCTGTAACGAACTA 58.501 45.455 0.00 0.00 0.00 2.24
24 25 2.322658 TGAACCCCTCTGTAACGAACT 58.677 47.619 0.00 0.00 0.00 3.01
25 26 2.825861 TGAACCCCTCTGTAACGAAC 57.174 50.000 0.00 0.00 0.00 3.95
26 27 2.094390 CGATGAACCCCTCTGTAACGAA 60.094 50.000 0.00 0.00 0.00 3.85
27 28 1.475280 CGATGAACCCCTCTGTAACGA 59.525 52.381 0.00 0.00 0.00 3.85
28 29 1.475280 TCGATGAACCCCTCTGTAACG 59.525 52.381 0.00 0.00 0.00 3.18
29 30 2.232941 TGTCGATGAACCCCTCTGTAAC 59.767 50.000 0.00 0.00 0.00 2.50
30 31 2.531771 TGTCGATGAACCCCTCTGTAA 58.468 47.619 0.00 0.00 0.00 2.41
31 32 2.225382 TGTCGATGAACCCCTCTGTA 57.775 50.000 0.00 0.00 0.00 2.74
32 33 1.482593 GATGTCGATGAACCCCTCTGT 59.517 52.381 0.00 0.00 0.00 3.41
33 34 1.482182 TGATGTCGATGAACCCCTCTG 59.518 52.381 0.00 0.00 0.00 3.35
34 35 1.866015 TGATGTCGATGAACCCCTCT 58.134 50.000 0.00 0.00 0.00 3.69
35 36 2.487934 CATGATGTCGATGAACCCCTC 58.512 52.381 0.00 0.00 0.00 4.30
36 37 1.141657 CCATGATGTCGATGAACCCCT 59.858 52.381 0.00 0.00 0.00 4.79
37 38 1.134098 ACCATGATGTCGATGAACCCC 60.134 52.381 0.00 0.00 0.00 4.95
38 39 2.332063 ACCATGATGTCGATGAACCC 57.668 50.000 0.00 0.00 0.00 4.11
39 40 5.751680 CATAAACCATGATGTCGATGAACC 58.248 41.667 0.00 0.00 36.69 3.62
40 41 5.207768 GCATAAACCATGATGTCGATGAAC 58.792 41.667 0.00 0.00 36.69 3.18
41 42 4.024977 CGCATAAACCATGATGTCGATGAA 60.025 41.667 0.00 0.00 36.69 2.57
42 43 3.494251 CGCATAAACCATGATGTCGATGA 59.506 43.478 0.00 0.00 36.69 2.92
43 44 3.364267 CCGCATAAACCATGATGTCGATG 60.364 47.826 0.00 0.00 36.69 3.84
44 45 2.807967 CCGCATAAACCATGATGTCGAT 59.192 45.455 0.00 0.00 36.69 3.59
45 46 2.159028 TCCGCATAAACCATGATGTCGA 60.159 45.455 0.00 0.00 36.69 4.20
46 47 2.032894 GTCCGCATAAACCATGATGTCG 60.033 50.000 0.00 0.00 36.69 4.35
47 48 2.290641 GGTCCGCATAAACCATGATGTC 59.709 50.000 0.00 0.00 36.69 3.06
48 49 2.297701 GGTCCGCATAAACCATGATGT 58.702 47.619 0.00 0.00 36.69 3.06
49 50 1.608590 GGGTCCGCATAAACCATGATG 59.391 52.381 0.00 0.00 36.69 3.07
50 51 1.494721 AGGGTCCGCATAAACCATGAT 59.505 47.619 0.00 0.00 36.69 2.45
51 52 0.916086 AGGGTCCGCATAAACCATGA 59.084 50.000 0.00 0.00 36.69 3.07
52 53 1.308998 GAGGGTCCGCATAAACCATG 58.691 55.000 0.00 0.00 37.28 3.66
53 54 0.916086 TGAGGGTCCGCATAAACCAT 59.084 50.000 0.00 0.00 37.28 3.55
54 55 0.916086 ATGAGGGTCCGCATAAACCA 59.084 50.000 4.42 0.00 37.28 3.67
55 56 1.308998 CATGAGGGTCCGCATAAACC 58.691 55.000 5.94 0.00 34.81 3.27
56 57 2.038387 ACATGAGGGTCCGCATAAAC 57.962 50.000 0.00 0.00 34.81 2.01
57 58 2.769663 ACTACATGAGGGTCCGCATAAA 59.230 45.455 0.00 0.00 34.81 1.40
58 59 2.364324 GACTACATGAGGGTCCGCATAA 59.636 50.000 0.00 0.00 34.81 1.90
59 60 1.961394 GACTACATGAGGGTCCGCATA 59.039 52.381 0.00 0.00 34.81 3.14
60 61 0.753262 GACTACATGAGGGTCCGCAT 59.247 55.000 0.00 0.30 36.93 4.73
61 62 1.327690 GGACTACATGAGGGTCCGCA 61.328 60.000 16.03 0.00 39.80 5.69
62 63 1.442148 GGACTACATGAGGGTCCGC 59.558 63.158 16.03 0.00 39.80 5.54
64 65 1.054978 GGGGGACTACATGAGGGTCC 61.055 65.000 20.01 20.01 46.14 4.46
65 66 2.529312 GGGGGACTACATGAGGGTC 58.471 63.158 0.00 4.38 0.00 4.46
66 67 4.831613 GGGGGACTACATGAGGGT 57.168 61.111 0.00 0.00 0.00 4.34
80 81 0.556258 GGGAAGGTAGGATTTGGGGG 59.444 60.000 0.00 0.00 0.00 5.40
81 82 1.608425 AGGGAAGGTAGGATTTGGGG 58.392 55.000 0.00 0.00 0.00 4.96
82 83 3.330998 GGATAGGGAAGGTAGGATTTGGG 59.669 52.174 0.00 0.00 0.00 4.12
83 84 3.008049 CGGATAGGGAAGGTAGGATTTGG 59.992 52.174 0.00 0.00 0.00 3.28
84 85 3.557264 GCGGATAGGGAAGGTAGGATTTG 60.557 52.174 0.00 0.00 0.00 2.32
85 86 2.638363 GCGGATAGGGAAGGTAGGATTT 59.362 50.000 0.00 0.00 0.00 2.17
86 87 2.258109 GCGGATAGGGAAGGTAGGATT 58.742 52.381 0.00 0.00 0.00 3.01
87 88 1.149288 TGCGGATAGGGAAGGTAGGAT 59.851 52.381 0.00 0.00 0.00 3.24
88 89 0.559205 TGCGGATAGGGAAGGTAGGA 59.441 55.000 0.00 0.00 0.00 2.94
89 90 1.550976 GATGCGGATAGGGAAGGTAGG 59.449 57.143 0.00 0.00 0.00 3.18
90 91 2.530701 AGATGCGGATAGGGAAGGTAG 58.469 52.381 0.00 0.00 0.00 3.18
91 92 2.696526 AGATGCGGATAGGGAAGGTA 57.303 50.000 0.00 0.00 0.00 3.08
92 93 2.249139 GTAGATGCGGATAGGGAAGGT 58.751 52.381 0.00 0.00 0.00 3.50
93 94 1.550976 GGTAGATGCGGATAGGGAAGG 59.449 57.143 0.00 0.00 0.00 3.46
94 95 2.494073 GAGGTAGATGCGGATAGGGAAG 59.506 54.545 0.00 0.00 0.00 3.46
95 96 2.526432 GAGGTAGATGCGGATAGGGAA 58.474 52.381 0.00 0.00 0.00 3.97
96 97 1.272536 GGAGGTAGATGCGGATAGGGA 60.273 57.143 0.00 0.00 0.00 4.20
97 98 1.187087 GGAGGTAGATGCGGATAGGG 58.813 60.000 0.00 0.00 0.00 3.53
98 99 1.821753 CTGGAGGTAGATGCGGATAGG 59.178 57.143 0.00 0.00 0.00 2.57
99 100 2.796557 TCTGGAGGTAGATGCGGATAG 58.203 52.381 0.00 0.00 0.00 2.08
100 101 2.891580 GTTCTGGAGGTAGATGCGGATA 59.108 50.000 0.00 0.00 0.00 2.59
101 102 1.689273 GTTCTGGAGGTAGATGCGGAT 59.311 52.381 0.00 0.00 0.00 4.18
102 103 1.112113 GTTCTGGAGGTAGATGCGGA 58.888 55.000 0.00 0.00 0.00 5.54
103 104 0.105039 GGTTCTGGAGGTAGATGCGG 59.895 60.000 0.00 0.00 0.00 5.69
104 105 1.115467 AGGTTCTGGAGGTAGATGCG 58.885 55.000 0.00 0.00 0.00 4.73
105 106 3.181464 GGTAAGGTTCTGGAGGTAGATGC 60.181 52.174 0.00 0.00 0.00 3.91
106 107 4.030913 TGGTAAGGTTCTGGAGGTAGATG 58.969 47.826 0.00 0.00 0.00 2.90
107 108 4.348020 TGGTAAGGTTCTGGAGGTAGAT 57.652 45.455 0.00 0.00 0.00 1.98
108 109 3.839323 TGGTAAGGTTCTGGAGGTAGA 57.161 47.619 0.00 0.00 0.00 2.59
109 110 3.838903 ACTTGGTAAGGTTCTGGAGGTAG 59.161 47.826 0.00 0.00 0.00 3.18
110 111 3.865571 ACTTGGTAAGGTTCTGGAGGTA 58.134 45.455 0.00 0.00 0.00 3.08
111 112 2.702748 ACTTGGTAAGGTTCTGGAGGT 58.297 47.619 0.00 0.00 0.00 3.85
112 113 3.328050 AGAACTTGGTAAGGTTCTGGAGG 59.672 47.826 7.42 0.00 46.76 4.30
113 114 4.625607 AGAACTTGGTAAGGTTCTGGAG 57.374 45.455 7.42 0.00 46.76 3.86
118 119 5.479124 TGGAGTAGAACTTGGTAAGGTTC 57.521 43.478 0.00 0.00 41.24 3.62
119 120 5.745181 GCTTGGAGTAGAACTTGGTAAGGTT 60.745 44.000 0.00 0.00 0.00 3.50
120 121 4.262938 GCTTGGAGTAGAACTTGGTAAGGT 60.263 45.833 0.00 0.00 0.00 3.50
121 122 4.020128 AGCTTGGAGTAGAACTTGGTAAGG 60.020 45.833 0.00 0.00 0.00 2.69
122 123 5.153950 AGCTTGGAGTAGAACTTGGTAAG 57.846 43.478 0.00 0.00 0.00 2.34
123 124 4.020485 GGAGCTTGGAGTAGAACTTGGTAA 60.020 45.833 0.00 0.00 0.00 2.85
124 125 3.514309 GGAGCTTGGAGTAGAACTTGGTA 59.486 47.826 0.00 0.00 0.00 3.25
125 126 2.303311 GGAGCTTGGAGTAGAACTTGGT 59.697 50.000 0.00 0.00 0.00 3.67
126 127 2.355209 GGGAGCTTGGAGTAGAACTTGG 60.355 54.545 0.00 0.00 0.00 3.61
127 128 2.675317 CGGGAGCTTGGAGTAGAACTTG 60.675 54.545 0.00 0.00 0.00 3.16
128 129 1.550976 CGGGAGCTTGGAGTAGAACTT 59.449 52.381 0.00 0.00 0.00 2.66
129 130 1.187087 CGGGAGCTTGGAGTAGAACT 58.813 55.000 0.00 0.00 0.00 3.01
130 131 1.135333 CTCGGGAGCTTGGAGTAGAAC 59.865 57.143 0.00 0.00 0.00 3.01
131 132 1.475403 CTCGGGAGCTTGGAGTAGAA 58.525 55.000 0.00 0.00 0.00 2.10
132 133 3.192799 CTCGGGAGCTTGGAGTAGA 57.807 57.895 0.00 0.00 0.00 2.59
146 147 0.934496 TCTTTGAACACGTTGCTCGG 59.066 50.000 6.79 0.00 44.69 4.63
147 148 2.563976 CATCTTTGAACACGTTGCTCG 58.436 47.619 0.00 0.84 46.00 5.03
148 149 2.310577 GCATCTTTGAACACGTTGCTC 58.689 47.619 0.00 0.00 0.00 4.26
149 150 1.334059 CGCATCTTTGAACACGTTGCT 60.334 47.619 2.09 0.00 0.00 3.91
150 151 1.044725 CGCATCTTTGAACACGTTGC 58.955 50.000 0.00 0.00 0.00 4.17
151 152 1.044725 GCGCATCTTTGAACACGTTG 58.955 50.000 0.30 0.00 0.00 4.10
152 153 0.660488 TGCGCATCTTTGAACACGTT 59.340 45.000 5.66 0.00 0.00 3.99
153 154 0.041312 GTGCGCATCTTTGAACACGT 60.041 50.000 15.91 0.00 0.00 4.49
154 155 0.725784 GGTGCGCATCTTTGAACACG 60.726 55.000 15.91 0.00 33.41 4.49
155 156 0.387239 GGGTGCGCATCTTTGAACAC 60.387 55.000 21.95 0.00 32.44 3.32
156 157 0.821301 TGGGTGCGCATCTTTGAACA 60.821 50.000 21.95 5.71 0.00 3.18
157 158 0.109597 CTGGGTGCGCATCTTTGAAC 60.110 55.000 21.95 2.66 0.00 3.18
158 159 0.250684 TCTGGGTGCGCATCTTTGAA 60.251 50.000 21.95 0.00 0.00 2.69
159 160 0.035152 ATCTGGGTGCGCATCTTTGA 60.035 50.000 21.95 15.86 0.00 2.69
160 161 0.379669 GATCTGGGTGCGCATCTTTG 59.620 55.000 21.95 10.92 0.00 2.77
161 162 1.091771 CGATCTGGGTGCGCATCTTT 61.092 55.000 21.95 2.59 0.00 2.52
162 163 1.522355 CGATCTGGGTGCGCATCTT 60.522 57.895 21.95 2.98 0.00 2.40
163 164 2.107750 CGATCTGGGTGCGCATCT 59.892 61.111 21.95 0.00 0.00 2.90
164 165 2.969238 CCGATCTGGGTGCGCATC 60.969 66.667 15.91 14.71 0.00 3.91
168 169 3.274586 CATGCCGATCTGGGTGCG 61.275 66.667 5.87 0.00 38.63 5.34
169 170 2.124570 ACATGCCGATCTGGGTGC 60.125 61.111 0.00 0.00 38.63 5.01
170 171 1.820906 CCACATGCCGATCTGGGTG 60.821 63.158 0.00 5.52 38.63 4.61
171 172 2.591753 CCACATGCCGATCTGGGT 59.408 61.111 0.00 0.00 38.63 4.51
172 173 2.203252 CCCACATGCCGATCTGGG 60.203 66.667 2.64 2.64 37.61 4.45
173 174 2.903855 GCCCACATGCCGATCTGG 60.904 66.667 0.00 0.00 42.50 3.86
174 175 3.274586 CGCCCACATGCCGATCTG 61.275 66.667 0.00 0.00 0.00 2.90
175 176 3.469970 TCGCCCACATGCCGATCT 61.470 61.111 0.00 0.00 0.00 2.75
176 177 3.272334 GTCGCCCACATGCCGATC 61.272 66.667 0.00 0.00 33.24 3.69
177 178 4.856801 GGTCGCCCACATGCCGAT 62.857 66.667 0.00 0.00 33.24 4.18
181 182 4.451150 TCGAGGTCGCCCACATGC 62.451 66.667 0.00 0.00 39.60 4.06
182 183 2.509336 GTCGAGGTCGCCCACATG 60.509 66.667 0.00 0.00 39.60 3.21
183 184 4.129737 CGTCGAGGTCGCCCACAT 62.130 66.667 0.00 0.00 39.60 3.21
185 186 4.773117 GACGTCGAGGTCGCCCAC 62.773 72.222 21.13 0.00 39.60 4.61
187 188 4.773117 GTGACGTCGAGGTCGCCC 62.773 72.222 31.46 19.08 40.64 6.13
189 190 4.773117 GGGTGACGTCGAGGTCGC 62.773 72.222 32.88 32.88 44.61 5.19
190 191 4.456253 CGGGTGACGTCGAGGTCG 62.456 72.222 27.52 16.02 39.83 4.79
191 192 4.112341 CCGGGTGACGTCGAGGTC 62.112 72.222 27.00 27.00 42.24 3.85
192 193 4.962836 ACCGGGTGACGTCGAGGT 62.963 66.667 11.12 11.12 42.24 3.85
193 194 4.112341 GACCGGGTGACGTCGAGG 62.112 72.222 3.30 13.17 42.24 4.63
194 195 4.456253 CGACCGGGTGACGTCGAG 62.456 72.222 3.30 1.81 43.59 4.04
195 196 4.986645 TCGACCGGGTGACGTCGA 62.987 66.667 3.30 7.55 45.50 4.20
196 197 4.456253 CTCGACCGGGTGACGTCG 62.456 72.222 3.30 4.74 42.87 5.12
197 198 4.773117 GCTCGACCGGGTGACGTC 62.773 72.222 9.11 9.11 42.24 4.34
208 209 4.819761 TGGATGGCAGCGCTCGAC 62.820 66.667 7.13 6.31 0.00 4.20
209 210 4.819761 GTGGATGGCAGCGCTCGA 62.820 66.667 7.13 0.00 0.00 4.04
211 212 4.479993 AGGTGGATGGCAGCGCTC 62.480 66.667 7.13 2.01 0.00 5.03
212 213 4.479993 GAGGTGGATGGCAGCGCT 62.480 66.667 2.64 2.64 0.00 5.92
214 215 4.100084 TGGAGGTGGATGGCAGCG 62.100 66.667 0.00 0.00 0.00 5.18
215 216 2.439156 GTGGAGGTGGATGGCAGC 60.439 66.667 0.00 0.00 0.00 5.25
216 217 1.929860 ATGGTGGAGGTGGATGGCAG 61.930 60.000 0.00 0.00 0.00 4.85
217 218 1.930133 ATGGTGGAGGTGGATGGCA 60.930 57.895 0.00 0.00 0.00 4.92
218 219 1.454479 CATGGTGGAGGTGGATGGC 60.454 63.158 0.00 0.00 0.00 4.40
219 220 0.182061 CTCATGGTGGAGGTGGATGG 59.818 60.000 0.00 0.00 0.00 3.51
220 221 3.794737 CTCATGGTGGAGGTGGATG 57.205 57.895 0.00 0.00 0.00 3.51
227 228 0.549950 ATGCCTTCCTCATGGTGGAG 59.450 55.000 8.07 0.00 34.76 3.86
228 229 0.548031 GATGCCTTCCTCATGGTGGA 59.452 55.000 4.58 4.58 32.72 4.02
229 230 0.816825 CGATGCCTTCCTCATGGTGG 60.817 60.000 0.00 0.00 34.23 4.61
230 231 1.442526 GCGATGCCTTCCTCATGGTG 61.443 60.000 0.00 0.00 34.23 4.17
231 232 1.153086 GCGATGCCTTCCTCATGGT 60.153 57.895 0.00 0.00 34.23 3.55
232 233 1.895707 GGCGATGCCTTCCTCATGG 60.896 63.158 0.00 0.00 46.69 3.66
233 234 3.741860 GGCGATGCCTTCCTCATG 58.258 61.111 0.00 0.00 46.69 3.07
243 244 2.079925 GAATCCTATCAAGGGCGATGC 58.920 52.381 0.00 0.00 43.84 3.91
244 245 3.692257 AGAATCCTATCAAGGGCGATG 57.308 47.619 0.00 0.00 43.84 3.84
245 246 4.593206 TGTAAGAATCCTATCAAGGGCGAT 59.407 41.667 0.00 0.00 43.84 4.58
246 247 3.964688 TGTAAGAATCCTATCAAGGGCGA 59.035 43.478 0.00 0.00 43.84 5.54
247 248 4.058817 GTGTAAGAATCCTATCAAGGGCG 58.941 47.826 0.00 0.00 43.84 6.13
248 249 5.036117 TGTGTAAGAATCCTATCAAGGGC 57.964 43.478 0.00 0.00 43.84 5.19
249 250 7.938140 TTTTGTGTAAGAATCCTATCAAGGG 57.062 36.000 0.00 0.00 43.84 3.95
256 257 9.020731 GGAGGAAAATTTTGTGTAAGAATCCTA 57.979 33.333 8.47 0.00 33.90 2.94
257 258 7.508977 TGGAGGAAAATTTTGTGTAAGAATCCT 59.491 33.333 8.47 4.30 36.33 3.24
258 259 7.666623 TGGAGGAAAATTTTGTGTAAGAATCC 58.333 34.615 8.47 0.00 0.00 3.01
259 260 9.541143 TTTGGAGGAAAATTTTGTGTAAGAATC 57.459 29.630 8.47 0.00 0.00 2.52
260 261 9.546428 CTTTGGAGGAAAATTTTGTGTAAGAAT 57.454 29.630 8.47 0.00 0.00 2.40
261 262 8.536175 ACTTTGGAGGAAAATTTTGTGTAAGAA 58.464 29.630 8.47 0.00 0.00 2.52
262 263 8.073467 ACTTTGGAGGAAAATTTTGTGTAAGA 57.927 30.769 8.47 0.00 0.00 2.10
263 264 7.438160 GGACTTTGGAGGAAAATTTTGTGTAAG 59.562 37.037 8.47 6.81 0.00 2.34
264 265 7.125053 AGGACTTTGGAGGAAAATTTTGTGTAA 59.875 33.333 8.47 0.00 0.00 2.41
265 266 6.609616 AGGACTTTGGAGGAAAATTTTGTGTA 59.390 34.615 8.47 0.00 0.00 2.90
266 267 5.425217 AGGACTTTGGAGGAAAATTTTGTGT 59.575 36.000 8.47 0.00 0.00 3.72
267 268 5.917462 AGGACTTTGGAGGAAAATTTTGTG 58.083 37.500 8.47 0.00 0.00 3.33
268 269 6.560003 AAGGACTTTGGAGGAAAATTTTGT 57.440 33.333 8.47 0.00 0.00 2.83
269 270 7.250445 CAAAGGACTTTGGAGGAAAATTTTG 57.750 36.000 8.47 0.00 44.47 2.44
289 290 6.759497 AATACGAATTCCTTCCTTCCAAAG 57.241 37.500 0.00 0.00 0.00 2.77
290 291 6.946009 AGAAATACGAATTCCTTCCTTCCAAA 59.054 34.615 0.00 0.00 0.00 3.28
291 292 6.374333 CAGAAATACGAATTCCTTCCTTCCAA 59.626 38.462 0.00 0.00 0.00 3.53
292 293 5.880332 CAGAAATACGAATTCCTTCCTTCCA 59.120 40.000 0.00 0.00 0.00 3.53
293 294 5.880887 ACAGAAATACGAATTCCTTCCTTCC 59.119 40.000 0.00 0.00 0.00 3.46
294 295 6.986904 ACAGAAATACGAATTCCTTCCTTC 57.013 37.500 0.00 0.00 0.00 3.46
295 296 8.893727 CAATACAGAAATACGAATTCCTTCCTT 58.106 33.333 0.00 0.00 0.00 3.36
296 297 7.499232 CCAATACAGAAATACGAATTCCTTCCT 59.501 37.037 0.00 0.00 0.00 3.36
297 298 7.497909 TCCAATACAGAAATACGAATTCCTTCC 59.502 37.037 0.00 0.00 0.00 3.46
298 299 8.433421 TCCAATACAGAAATACGAATTCCTTC 57.567 34.615 0.00 0.00 0.00 3.46
299 300 8.980481 ATCCAATACAGAAATACGAATTCCTT 57.020 30.769 0.00 0.00 0.00 3.36
300 301 8.840321 CAATCCAATACAGAAATACGAATTCCT 58.160 33.333 0.00 0.00 0.00 3.36
301 302 8.836413 TCAATCCAATACAGAAATACGAATTCC 58.164 33.333 0.00 0.00 0.00 3.01
305 306 9.389755 TGAATCAATCCAATACAGAAATACGAA 57.610 29.630 0.00 0.00 0.00 3.85
306 307 8.956533 TGAATCAATCCAATACAGAAATACGA 57.043 30.769 0.00 0.00 0.00 3.43
313 314 9.730705 GAAGGATATGAATCAATCCAATACAGA 57.269 33.333 19.24 0.00 43.55 3.41
314 315 9.511272 TGAAGGATATGAATCAATCCAATACAG 57.489 33.333 19.24 0.00 43.55 2.74
315 316 9.288576 GTGAAGGATATGAATCAATCCAATACA 57.711 33.333 19.24 12.94 43.55 2.29
316 317 8.446273 CGTGAAGGATATGAATCAATCCAATAC 58.554 37.037 19.24 14.55 43.55 1.89
317 318 8.374743 TCGTGAAGGATATGAATCAATCCAATA 58.625 33.333 19.24 7.97 43.55 1.90
318 319 7.226441 TCGTGAAGGATATGAATCAATCCAAT 58.774 34.615 19.24 11.68 43.55 3.16
319 320 6.591001 TCGTGAAGGATATGAATCAATCCAA 58.409 36.000 19.24 7.97 43.55 3.53
320 321 6.173427 TCGTGAAGGATATGAATCAATCCA 57.827 37.500 19.24 4.24 43.55 3.41
321 322 7.496529 TTTCGTGAAGGATATGAATCAATCC 57.503 36.000 13.14 13.14 41.77 3.01
324 325 9.830975 TCTATTTTCGTGAAGGATATGAATCAA 57.169 29.630 0.00 0.00 33.41 2.57
325 326 9.481340 CTCTATTTTCGTGAAGGATATGAATCA 57.519 33.333 0.00 0.00 33.41 2.57
326 327 9.698309 TCTCTATTTTCGTGAAGGATATGAATC 57.302 33.333 0.00 0.00 0.00 2.52
420 421 3.805971 CGGTGAAACTTTAACGTCTCCTT 59.194 43.478 0.00 0.00 36.74 3.36
477 479 4.386951 CCGTGCATGTCCCGGACA 62.387 66.667 22.58 22.58 46.90 4.02
496 522 3.706373 GCCCGGAGAGGACAAGCA 61.706 66.667 0.73 0.00 45.00 3.91
498 524 4.821589 GCGCCCGGAGAGGACAAG 62.822 72.222 0.73 0.00 45.00 3.16
514 540 1.427020 GTTCCGAGAAGCATGCAGC 59.573 57.895 21.98 11.19 46.19 5.25
521 547 0.674895 ACTGCATGGTTCCGAGAAGC 60.675 55.000 8.35 8.35 0.00 3.86
522 548 1.081892 CACTGCATGGTTCCGAGAAG 58.918 55.000 0.00 0.00 0.00 2.85
540 566 0.806884 ACGACGTTTGTCCTTTCGCA 60.807 50.000 0.00 0.00 42.37 5.10
772 863 5.332743 TGCTCCTAGAATTGATGGGTTTTT 58.667 37.500 0.00 0.00 0.00 1.94
890 987 0.532573 GAGGGTGAGTGAGCGATGAA 59.467 55.000 0.00 0.00 0.00 2.57
911 1011 1.192146 GCAGAGTGGGAGTGTGGGTA 61.192 60.000 0.00 0.00 0.00 3.69
931 1031 4.038642 CAGAAGGAGCTAGATAAGGTGGTC 59.961 50.000 0.00 0.00 35.60 4.02
1111 1216 2.839026 GACGCGCGTATGTAAGCTATAG 59.161 50.000 37.91 0.00 0.00 1.31
1112 1217 2.722706 CGACGCGCGTATGTAAGCTATA 60.723 50.000 37.91 0.00 34.64 1.31
1113 1218 1.682982 GACGCGCGTATGTAAGCTAT 58.317 50.000 37.91 8.42 0.00 2.97
1114 1219 0.655337 CGACGCGCGTATGTAAGCTA 60.655 55.000 37.91 0.00 34.64 3.32
1115 1220 1.937846 CGACGCGCGTATGTAAGCT 60.938 57.895 37.91 9.99 34.64 3.74
1116 1221 2.533285 CGACGCGCGTATGTAAGC 59.467 61.111 37.91 20.39 34.64 3.09
1129 1234 0.317603 AAAGAGGACACGACACGACG 60.318 55.000 0.00 0.00 39.31 5.12
1133 1238 2.288825 TGATGGAAAGAGGACACGACAC 60.289 50.000 0.00 0.00 0.00 3.67
1138 1243 2.746362 CTGCTTGATGGAAAGAGGACAC 59.254 50.000 0.00 0.00 0.00 3.67
1142 1247 0.731417 CGCTGCTTGATGGAAAGAGG 59.269 55.000 0.00 0.00 0.00 3.69
1143 1248 1.129998 CACGCTGCTTGATGGAAAGAG 59.870 52.381 0.00 0.00 0.00 2.85
1144 1249 1.159285 CACGCTGCTTGATGGAAAGA 58.841 50.000 0.00 0.00 0.00 2.52
1146 1251 1.580942 GCACGCTGCTTGATGGAAA 59.419 52.632 10.59 0.00 40.96 3.13
1147 1252 2.679934 CGCACGCTGCTTGATGGAA 61.680 57.895 10.59 0.00 42.25 3.53
1168 1279 1.531423 GCATACAGCCATGGATCAGG 58.469 55.000 18.40 1.65 37.23 3.86
1204 1315 3.357079 CAGAACCCTGCACACCGC 61.357 66.667 0.00 0.00 42.89 5.68
1405 1516 3.494378 TCGACCGACGAGGATCAC 58.506 61.111 8.56 0.00 46.45 3.06
1434 1560 2.671963 GGGTTGAAGCCGGTGGTC 60.672 66.667 1.90 0.00 0.00 4.02
1439 1565 2.440247 GATGGGGGTTGAAGCCGG 60.440 66.667 7.39 0.00 36.39 6.13
1447 1573 0.638292 TACTCGGTAGGATGGGGGTT 59.362 55.000 0.00 0.00 0.00 4.11
1448 1574 0.105811 GTACTCGGTAGGATGGGGGT 60.106 60.000 0.00 0.00 0.00 4.95
1449 1575 0.830866 GGTACTCGGTAGGATGGGGG 60.831 65.000 0.00 0.00 0.00 5.40
1450 1576 1.177256 CGGTACTCGGTAGGATGGGG 61.177 65.000 0.00 0.00 34.75 4.96
1451 1577 0.179009 TCGGTACTCGGTAGGATGGG 60.179 60.000 0.00 0.00 39.77 4.00
1452 1578 0.950116 GTCGGTACTCGGTAGGATGG 59.050 60.000 0.00 0.00 39.77 3.51
1455 1581 1.278985 TCTTGTCGGTACTCGGTAGGA 59.721 52.381 0.00 0.00 39.77 2.94
1459 1585 2.479566 TACTCTTGTCGGTACTCGGT 57.520 50.000 0.00 0.00 39.77 4.69
1461 1592 3.692576 CCATTACTCTTGTCGGTACTCG 58.307 50.000 0.00 0.00 40.90 4.18
1462 1593 3.130693 AGCCATTACTCTTGTCGGTACTC 59.869 47.826 0.00 0.00 0.00 2.59
1463 1594 3.097614 AGCCATTACTCTTGTCGGTACT 58.902 45.455 0.00 0.00 0.00 2.73
1464 1595 3.187700 CAGCCATTACTCTTGTCGGTAC 58.812 50.000 0.00 0.00 0.00 3.34
1473 1604 5.130975 TCCAATATCACACAGCCATTACTCT 59.869 40.000 0.00 0.00 0.00 3.24
1479 1610 2.564771 CGTCCAATATCACACAGCCAT 58.435 47.619 0.00 0.00 0.00 4.40
1481 1612 0.657840 GCGTCCAATATCACACAGCC 59.342 55.000 0.00 0.00 0.00 4.85
1484 1615 1.417577 CGCGCGTCCAATATCACACA 61.418 55.000 24.19 0.00 0.00 3.72
1485 1616 1.272715 CGCGCGTCCAATATCACAC 59.727 57.895 24.19 0.00 0.00 3.82
1492 1637 1.813753 ATAAGCACGCGCGTCCAAT 60.814 52.632 35.61 19.27 45.49 3.16
1513 1658 1.103398 GCACACAGCACAGGGAAGTT 61.103 55.000 0.00 0.00 44.79 2.66
1527 1672 3.374058 ACCAATATTTAGCACGAGCACAC 59.626 43.478 7.77 0.00 45.49 3.82
1528 1673 3.605634 ACCAATATTTAGCACGAGCACA 58.394 40.909 7.77 0.00 45.49 4.57
1529 1674 5.465390 TCATACCAATATTTAGCACGAGCAC 59.535 40.000 7.77 0.00 45.49 4.40
1530 1675 5.606505 TCATACCAATATTTAGCACGAGCA 58.393 37.500 7.77 0.00 45.49 4.26
1560 1705 3.191078 TCCCAGCTAGTAGAGTACGTC 57.809 52.381 0.00 0.00 0.00 4.34
1561 1706 3.496515 GGATCCCAGCTAGTAGAGTACGT 60.497 52.174 0.00 0.00 0.00 3.57
1562 1707 3.075884 GGATCCCAGCTAGTAGAGTACG 58.924 54.545 0.00 0.00 0.00 3.67
1563 1708 4.329392 GAGGATCCCAGCTAGTAGAGTAC 58.671 52.174 8.55 0.00 0.00 2.73
1565 1710 2.224670 CGAGGATCCCAGCTAGTAGAGT 60.225 54.545 8.55 0.00 0.00 3.24
1567 1712 2.039216 CTCGAGGATCCCAGCTAGTAGA 59.961 54.545 8.55 0.00 0.00 2.59
1583 1790 2.057316 CAGCAAACTCACTCACTCGAG 58.943 52.381 11.84 11.84 45.49 4.04
1616 1823 0.944386 GGTAGCCACACACACACTTG 59.056 55.000 0.00 0.00 0.00 3.16
1617 1824 0.837272 AGGTAGCCACACACACACTT 59.163 50.000 0.00 0.00 0.00 3.16
1619 1826 0.179056 ACAGGTAGCCACACACACAC 60.179 55.000 0.00 0.00 0.00 3.82
1620 1827 0.179059 CACAGGTAGCCACACACACA 60.179 55.000 0.00 0.00 0.00 3.72
1621 1828 0.179056 ACACAGGTAGCCACACACAC 60.179 55.000 0.00 0.00 0.00 3.82
1622 1829 1.069513 GTACACAGGTAGCCACACACA 59.930 52.381 0.00 0.00 0.00 3.72
1645 1852 1.730064 GTACGTGCTACAACCACATGG 59.270 52.381 0.00 0.00 42.17 3.66
1646 1853 2.666508 GAGTACGTGCTACAACCACATG 59.333 50.000 6.01 0.00 32.85 3.21
1647 1854 2.670229 CGAGTACGTGCTACAACCACAT 60.670 50.000 6.01 0.00 32.85 3.21
1648 1855 1.335233 CGAGTACGTGCTACAACCACA 60.335 52.381 6.01 0.00 32.85 4.17
1666 1873 4.637534 ACGGAGAACAATTAGCTACTACGA 59.362 41.667 15.93 0.00 35.62 3.43
1667 1874 4.733887 CACGGAGAACAATTAGCTACTACG 59.266 45.833 9.25 9.25 37.65 3.51
1669 1876 5.184479 ACACACGGAGAACAATTAGCTACTA 59.816 40.000 0.00 0.00 0.00 1.82
1670 1877 4.021368 ACACACGGAGAACAATTAGCTACT 60.021 41.667 0.00 0.00 0.00 2.57
1803 2015 0.949105 ACAAAGACGGCGACATGACC 60.949 55.000 16.62 0.00 0.00 4.02
1804 2016 1.705256 TACAAAGACGGCGACATGAC 58.295 50.000 16.62 0.00 0.00 3.06
1825 2037 1.535028 TGCACGATGGCACTTACAAAG 59.465 47.619 0.00 0.00 39.25 2.77
1826 2038 1.598882 TGCACGATGGCACTTACAAA 58.401 45.000 0.00 0.00 39.25 2.83
1827 2039 3.314083 TGCACGATGGCACTTACAA 57.686 47.368 0.00 0.00 39.25 2.41
1835 2047 3.433615 GGAGTAAAGATATGCACGATGGC 59.566 47.826 0.00 0.00 0.00 4.40
1836 2048 4.887748 AGGAGTAAAGATATGCACGATGG 58.112 43.478 0.00 0.00 0.00 3.51
1837 2049 7.063898 CCATTAGGAGTAAAGATATGCACGATG 59.936 40.741 0.00 0.00 36.89 3.84
1838 2050 7.039011 TCCATTAGGAGTAAAGATATGCACGAT 60.039 37.037 0.00 0.00 39.61 3.73
1839 2051 6.266786 TCCATTAGGAGTAAAGATATGCACGA 59.733 38.462 0.00 0.00 39.61 4.35
1840 2052 6.455647 TCCATTAGGAGTAAAGATATGCACG 58.544 40.000 0.00 0.00 39.61 5.34
1875 2087 2.556622 ACGAAAATTGACCGGCAAAGAT 59.443 40.909 13.95 4.79 40.48 2.40
1880 2092 1.238625 GGGACGAAAATTGACCGGCA 61.239 55.000 0.00 0.00 32.00 5.69
1961 2174 4.710167 TGTCGGTCTCGAGGGCGA 62.710 66.667 13.56 5.66 46.91 5.54
2055 2271 7.938490 AGGTTTATTTTCGTAGGTTAACCTTCA 59.062 33.333 31.47 12.85 46.09 3.02
2371 2600 0.182537 TTATCCATGTCTTGGGGCGG 59.817 55.000 4.99 0.00 46.45 6.13


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.