Multiple sequence alignment - TraesCS4B01G077600

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G077600 chr4B 100.000 4304 0 0 1 4304 74440222 74444525 0.000000e+00 7949.0
1 TraesCS4B01G077600 chr4B 84.270 89 9 5 3883 3969 40913531 40913446 9.920000e-12 82.4
2 TraesCS4B01G077600 chr4D 93.529 2936 113 38 942 3854 50641232 50644113 0.000000e+00 4298.0
3 TraesCS4B01G077600 chr4D 86.957 552 23 18 364 907 50640725 50641235 3.730000e-160 575.0
4 TraesCS4B01G077600 chr4D 90.000 320 30 2 1 319 50640325 50640643 3.100000e-111 412.0
5 TraesCS4B01G077600 chr4D 94.815 135 5 2 4171 4304 50644056 50644189 4.360000e-50 209.0
6 TraesCS4B01G077600 chr4A 93.387 2843 140 21 942 3763 546298909 546296094 0.000000e+00 4165.0
7 TraesCS4B01G077600 chr4A 95.270 296 12 2 4011 4304 546296253 546295958 6.520000e-128 468.0
8 TraesCS4B01G077600 chr4A 92.282 298 7 5 364 649 546299412 546299119 4.010000e-110 409.0
9 TraesCS4B01G077600 chr4A 85.973 221 7 6 697 907 546299112 546298906 9.370000e-52 215.0
10 TraesCS4B01G077600 chr4A 90.260 154 11 4 166 318 546299651 546299501 9.440000e-47 198.0
11 TraesCS4B01G077600 chr4A 90.083 121 12 0 1 121 546299774 546299654 1.600000e-34 158.0
12 TraesCS4B01G077600 chr4A 92.308 78 5 1 2288 2365 568880943 568880867 4.550000e-20 110.0
13 TraesCS4B01G077600 chr5D 76.661 1821 358 57 1101 2895 473117613 473115834 0.000000e+00 946.0
14 TraesCS4B01G077600 chr5B 76.219 1846 370 58 1101 2919 580515354 580513551 0.000000e+00 913.0
15 TraesCS4B01G077600 chr5B 83.168 101 12 4 3882 3979 383024438 383024340 2.130000e-13 87.9
16 TraesCS4B01G077600 chr5A 75.957 1776 375 47 1167 2919 593090091 593088345 0.000000e+00 867.0
17 TraesCS4B01G077600 chr6A 76.923 416 82 10 2490 2901 572572843 572572438 1.560000e-54 224.0
18 TraesCS4B01G077600 chr6B 76.413 407 82 10 2487 2889 643898439 643898835 1.570000e-49 207.0
19 TraesCS4B01G077600 chr6D 74.942 431 98 7 2487 2915 427569035 427568613 5.680000e-44 189.0
20 TraesCS4B01G077600 chr7B 76.712 219 45 5 2502 2717 517394136 517394351 2.720000e-22 117.0
21 TraesCS4B01G077600 chr7D 80.870 115 14 3 3854 3968 178117680 178117786 2.760000e-12 84.2
22 TraesCS4B01G077600 chr7D 79.208 101 13 8 3888 3984 37538849 37538945 3.590000e-06 63.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G077600 chr4B 74440222 74444525 4303 False 7949.0 7949 100.000000 1 4304 1 chr4B.!!$F1 4303
1 TraesCS4B01G077600 chr4D 50640325 50644189 3864 False 1373.5 4298 91.325250 1 4304 4 chr4D.!!$F1 4303
2 TraesCS4B01G077600 chr4A 546295958 546299774 3816 True 935.5 4165 91.209167 1 4304 6 chr4A.!!$R2 4303
3 TraesCS4B01G077600 chr5D 473115834 473117613 1779 True 946.0 946 76.661000 1101 2895 1 chr5D.!!$R1 1794
4 TraesCS4B01G077600 chr5B 580513551 580515354 1803 True 913.0 913 76.219000 1101 2919 1 chr5B.!!$R2 1818
5 TraesCS4B01G077600 chr5A 593088345 593090091 1746 True 867.0 867 75.957000 1167 2919 1 chr5A.!!$R1 1752

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
689 753 0.033503 CCTCCCACCGGCCTTAATTT 60.034 55.000 0.00 0.0 0.00 1.82 F
692 756 0.033503 CCCACCGGCCTTAATTTCCT 60.034 55.000 0.00 0.0 0.00 3.36 F
921 1010 0.035739 ACGGCCCATTCGTTTACAGT 59.964 50.000 0.00 0.0 37.61 3.55 F
922 1011 0.725117 CGGCCCATTCGTTTACAGTC 59.275 55.000 0.00 0.0 0.00 3.51 F
1104 1205 0.739462 TTCACATGGCTAAGTCCGCG 60.739 55.000 0.00 0.0 0.00 6.46 F
2895 2996 1.811266 CCTGTGCGCGCTCAAGTAT 60.811 57.895 32.15 0.0 0.00 2.12 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1500 1601 0.832135 AGGCCGAGGAGTTGAAGTCA 60.832 55.000 0.00 0.0 0.00 3.41 R
1551 1652 3.149648 GCCTCGTAGCCCCGGTTA 61.150 66.667 0.00 0.0 0.00 2.85 R
2703 2804 0.393944 AGTAGGCGGTCGTCATGAGA 60.394 55.000 0.00 0.0 0.00 3.27 R
2895 2996 1.425267 CGGCGATCATGTTTGGCGTA 61.425 55.000 24.57 0.0 44.18 4.42 R
2901 3002 2.819595 AGCGCGGCGATCATGTTT 60.820 55.556 28.54 0.0 0.00 2.83 R
3891 4016 0.026803 CAGACGGCGCTATTTCAAGC 59.973 55.000 6.90 0.0 39.21 4.01 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
70 71 9.403110 CCTGTTATAGCATGATAATTTTTGAGC 57.597 33.333 0.00 0.00 0.00 4.26
77 78 3.753842 TGATAATTTTTGAGCGTTCGCC 58.246 40.909 13.54 6.20 0.00 5.54
106 107 5.130350 CAGTTTTTAGAGGAAACACTCCCA 58.870 41.667 3.01 0.00 46.81 4.37
110 111 5.843019 TTTAGAGGAAACACTCCCAGATT 57.157 39.130 0.00 0.00 46.81 2.40
165 166 1.347320 GGTTCGTTCACTCGGATGAC 58.653 55.000 0.00 0.00 0.00 3.06
183 184 1.134901 CCTCCGTGAGAGAACGTCG 59.865 63.158 0.00 0.00 46.50 5.12
186 187 2.870161 CGTGAGAGAACGTCGGCG 60.870 66.667 8.42 8.42 44.93 6.46
196 197 2.643485 CGTCGGCGCGTTATTTGC 60.643 61.111 8.43 0.00 0.00 3.68
220 221 4.846779 TGTTAAAGAAACATCACAGCCC 57.153 40.909 0.00 0.00 43.22 5.19
242 243 0.104120 ACAAAAAGCTGCCCGAAACC 59.896 50.000 0.00 0.00 0.00 3.27
257 258 2.283884 CGAAACCGCAGCAAAAACAAAT 59.716 40.909 0.00 0.00 0.00 2.32
301 302 2.432444 TCACGTTTTCACATGGATCCC 58.568 47.619 9.90 0.00 0.00 3.85
319 320 1.074872 CCCCGTCGTTTTAGCGAGTC 61.075 60.000 0.00 0.00 41.85 3.36
321 322 1.668047 CCCGTCGTTTTAGCGAGTCTT 60.668 52.381 0.00 0.00 41.85 3.01
324 325 1.126296 GTCGTTTTAGCGAGTCTTGCC 59.874 52.381 8.56 0.00 41.85 4.52
325 326 1.144969 CGTTTTAGCGAGTCTTGCCA 58.855 50.000 8.56 0.00 0.00 4.92
328 329 1.508632 TTTAGCGAGTCTTGCCACAC 58.491 50.000 8.56 0.00 0.00 3.82
332 333 0.110056 GCGAGTCTTGCCACACAATG 60.110 55.000 0.00 0.00 37.72 2.82
333 334 1.229428 CGAGTCTTGCCACACAATGT 58.771 50.000 0.00 0.00 37.72 2.71
355 386 7.295322 TGTGAAGAGATACAGAATATGGGAG 57.705 40.000 0.00 0.00 0.00 4.30
363 394 3.041946 ACAGAATATGGGAGGGACAGAC 58.958 50.000 0.00 0.00 0.00 3.51
364 395 3.041211 CAGAATATGGGAGGGACAGACA 58.959 50.000 0.00 0.00 0.00 3.41
366 397 2.877154 ATATGGGAGGGACAGACACT 57.123 50.000 0.00 0.00 33.40 3.55
408 453 2.216898 GAGGATGCTTTGATTCCTCGG 58.783 52.381 2.68 0.00 44.39 4.63
613 675 3.625764 TGCGCCCACATATACTTTTTCTC 59.374 43.478 4.18 0.00 0.00 2.87
614 676 3.877508 GCGCCCACATATACTTTTTCTCT 59.122 43.478 0.00 0.00 0.00 3.10
649 713 3.489908 CGGATATCACTCACACTCACCAG 60.490 52.174 4.83 0.00 0.00 4.00
650 714 3.449018 GGATATCACTCACACTCACCAGT 59.551 47.826 4.83 0.00 0.00 4.00
651 715 4.440802 GGATATCACTCACACTCACCAGTC 60.441 50.000 4.83 0.00 0.00 3.51
652 716 1.775385 TCACTCACACTCACCAGTCA 58.225 50.000 0.00 0.00 0.00 3.41
653 717 1.409064 TCACTCACACTCACCAGTCAC 59.591 52.381 0.00 0.00 0.00 3.67
655 719 0.752658 CTCACACTCACCAGTCACCA 59.247 55.000 0.00 0.00 0.00 4.17
656 720 1.345741 CTCACACTCACCAGTCACCAT 59.654 52.381 0.00 0.00 0.00 3.55
657 721 1.070601 TCACACTCACCAGTCACCATG 59.929 52.381 0.00 0.00 0.00 3.66
658 722 0.397941 ACACTCACCAGTCACCATGG 59.602 55.000 11.19 11.19 43.87 3.66
659 723 0.686789 CACTCACCAGTCACCATGGA 59.313 55.000 21.47 0.00 40.51 3.41
660 724 0.687354 ACTCACCAGTCACCATGGAC 59.313 55.000 21.47 7.18 40.51 4.02
661 725 0.686789 CTCACCAGTCACCATGGACA 59.313 55.000 21.47 0.04 40.51 4.02
662 726 1.280133 CTCACCAGTCACCATGGACAT 59.720 52.381 21.47 0.00 40.51 3.06
663 727 1.278985 TCACCAGTCACCATGGACATC 59.721 52.381 21.47 5.83 40.51 3.06
664 728 1.280133 CACCAGTCACCATGGACATCT 59.720 52.381 21.47 8.14 40.51 2.90
665 729 1.988107 ACCAGTCACCATGGACATCTT 59.012 47.619 21.47 0.00 40.51 2.40
666 730 2.376518 ACCAGTCACCATGGACATCTTT 59.623 45.455 21.47 0.00 40.51 2.52
667 731 3.587061 ACCAGTCACCATGGACATCTTTA 59.413 43.478 21.47 0.00 40.51 1.85
668 732 3.941483 CCAGTCACCATGGACATCTTTAC 59.059 47.826 21.47 4.29 40.51 2.01
669 733 4.323792 CCAGTCACCATGGACATCTTTACT 60.324 45.833 21.47 6.50 40.51 2.24
670 734 4.872691 CAGTCACCATGGACATCTTTACTC 59.127 45.833 21.47 0.00 40.29 2.59
671 735 4.080863 AGTCACCATGGACATCTTTACTCC 60.081 45.833 21.47 0.00 40.29 3.85
672 736 4.080863 GTCACCATGGACATCTTTACTCCT 60.081 45.833 21.47 0.00 37.73 3.69
673 737 4.162320 TCACCATGGACATCTTTACTCCTC 59.838 45.833 21.47 0.00 0.00 3.71
674 738 3.456277 ACCATGGACATCTTTACTCCTCC 59.544 47.826 21.47 0.00 0.00 4.30
675 739 3.181450 CCATGGACATCTTTACTCCTCCC 60.181 52.174 5.56 0.00 0.00 4.30
676 740 3.199442 TGGACATCTTTACTCCTCCCA 57.801 47.619 0.00 0.00 0.00 4.37
677 741 2.838202 TGGACATCTTTACTCCTCCCAC 59.162 50.000 0.00 0.00 0.00 4.61
678 742 2.170817 GGACATCTTTACTCCTCCCACC 59.829 54.545 0.00 0.00 0.00 4.61
679 743 1.831736 ACATCTTTACTCCTCCCACCG 59.168 52.381 0.00 0.00 0.00 4.94
680 744 1.139058 CATCTTTACTCCTCCCACCGG 59.861 57.143 0.00 0.00 0.00 5.28
681 745 1.221021 CTTTACTCCTCCCACCGGC 59.779 63.158 0.00 0.00 0.00 6.13
682 746 2.253403 CTTTACTCCTCCCACCGGCC 62.253 65.000 0.00 0.00 0.00 6.13
683 747 2.758852 TTTACTCCTCCCACCGGCCT 62.759 60.000 0.00 0.00 0.00 5.19
684 748 2.758852 TTACTCCTCCCACCGGCCTT 62.759 60.000 0.00 0.00 0.00 4.35
685 749 1.877672 TACTCCTCCCACCGGCCTTA 61.878 60.000 0.00 0.00 0.00 2.69
686 750 1.993391 CTCCTCCCACCGGCCTTAA 60.993 63.158 0.00 0.00 0.00 1.85
687 751 1.307517 TCCTCCCACCGGCCTTAAT 60.308 57.895 0.00 0.00 0.00 1.40
688 752 0.917333 TCCTCCCACCGGCCTTAATT 60.917 55.000 0.00 0.00 0.00 1.40
689 753 0.033503 CCTCCCACCGGCCTTAATTT 60.034 55.000 0.00 0.00 0.00 1.82
690 754 1.389555 CTCCCACCGGCCTTAATTTC 58.610 55.000 0.00 0.00 0.00 2.17
691 755 0.033894 TCCCACCGGCCTTAATTTCC 60.034 55.000 0.00 0.00 0.00 3.13
692 756 0.033503 CCCACCGGCCTTAATTTCCT 60.034 55.000 0.00 0.00 0.00 3.36
693 757 1.618616 CCCACCGGCCTTAATTTCCTT 60.619 52.381 0.00 0.00 0.00 3.36
694 758 1.749063 CCACCGGCCTTAATTTCCTTC 59.251 52.381 0.00 0.00 0.00 3.46
695 759 1.400494 CACCGGCCTTAATTTCCTTCG 59.600 52.381 0.00 0.00 0.00 3.79
702 782 4.379499 GGCCTTAATTTCCTTCGACACTTG 60.379 45.833 0.00 0.00 0.00 3.16
746 826 4.450419 CACACACAAACTTCATCTCCTCTC 59.550 45.833 0.00 0.00 0.00 3.20
749 829 4.020662 ACACAAACTTCATCTCCTCTCCTC 60.021 45.833 0.00 0.00 0.00 3.71
750 830 4.222588 CACAAACTTCATCTCCTCTCCTCT 59.777 45.833 0.00 0.00 0.00 3.69
752 832 5.046663 ACAAACTTCATCTCCTCTCCTCTTC 60.047 44.000 0.00 0.00 0.00 2.87
753 833 4.608170 ACTTCATCTCCTCTCCTCTTCT 57.392 45.455 0.00 0.00 0.00 2.85
754 834 4.946646 ACTTCATCTCCTCTCCTCTTCTT 58.053 43.478 0.00 0.00 0.00 2.52
755 835 4.711355 ACTTCATCTCCTCTCCTCTTCTTG 59.289 45.833 0.00 0.00 0.00 3.02
756 836 4.329638 TCATCTCCTCTCCTCTTCTTGT 57.670 45.455 0.00 0.00 0.00 3.16
757 837 5.458451 TCATCTCCTCTCCTCTTCTTGTA 57.542 43.478 0.00 0.00 0.00 2.41
758 838 5.445069 TCATCTCCTCTCCTCTTCTTGTAG 58.555 45.833 0.00 0.00 0.00 2.74
759 839 3.626930 TCTCCTCTCCTCTTCTTGTAGC 58.373 50.000 0.00 0.00 0.00 3.58
760 840 3.010696 TCTCCTCTCCTCTTCTTGTAGCA 59.989 47.826 0.00 0.00 0.00 3.49
761 841 3.093057 TCCTCTCCTCTTCTTGTAGCAC 58.907 50.000 0.00 0.00 0.00 4.40
762 842 2.159310 CCTCTCCTCTTCTTGTAGCACG 60.159 54.545 0.00 0.00 0.00 5.34
763 843 1.202582 TCTCCTCTTCTTGTAGCACGC 59.797 52.381 0.00 0.00 0.00 5.34
764 844 0.966179 TCCTCTTCTTGTAGCACGCA 59.034 50.000 0.00 0.00 0.00 5.24
765 845 1.071605 CCTCTTCTTGTAGCACGCAC 58.928 55.000 0.00 0.00 0.00 5.34
766 846 0.710567 CTCTTCTTGTAGCACGCACG 59.289 55.000 0.00 0.00 0.00 5.34
767 847 1.130613 CTTCTTGTAGCACGCACGC 59.869 57.895 0.00 0.00 0.00 5.34
835 924 1.392710 ATCAGTAAGGCTACCGCGCT 61.393 55.000 5.56 0.00 36.88 5.92
861 950 0.961019 TAACCACGCGTCCTTGTAGT 59.039 50.000 9.86 0.00 0.00 2.73
898 987 1.652619 GCTAAGCTTCGTCGTAACACC 59.347 52.381 0.00 0.00 0.00 4.16
907 996 3.045492 CGTAACACCACCACGGCC 61.045 66.667 0.00 0.00 39.03 6.13
908 997 2.670592 GTAACACCACCACGGCCC 60.671 66.667 0.00 0.00 39.03 5.80
909 998 3.169242 TAACACCACCACGGCCCA 61.169 61.111 0.00 0.00 39.03 5.36
910 999 2.530672 TAACACCACCACGGCCCAT 61.531 57.895 0.00 0.00 39.03 4.00
911 1000 2.070399 TAACACCACCACGGCCCATT 62.070 55.000 0.00 0.00 39.03 3.16
912 1001 3.061848 CACCACCACGGCCCATTC 61.062 66.667 0.00 0.00 39.03 2.67
913 1002 4.715523 ACCACCACGGCCCATTCG 62.716 66.667 0.00 0.00 39.03 3.34
914 1003 4.715523 CCACCACGGCCCATTCGT 62.716 66.667 0.00 0.00 41.93 3.85
915 1004 2.671619 CACCACGGCCCATTCGTT 60.672 61.111 0.00 0.00 38.94 3.85
916 1005 2.114411 ACCACGGCCCATTCGTTT 59.886 55.556 0.00 0.00 38.94 3.60
917 1006 0.956410 CACCACGGCCCATTCGTTTA 60.956 55.000 0.00 0.00 38.94 2.01
918 1007 0.956902 ACCACGGCCCATTCGTTTAC 60.957 55.000 0.00 0.00 38.94 2.01
919 1008 0.956410 CCACGGCCCATTCGTTTACA 60.956 55.000 0.00 0.00 38.94 2.41
920 1009 0.446222 CACGGCCCATTCGTTTACAG 59.554 55.000 0.00 0.00 38.94 2.74
921 1010 0.035739 ACGGCCCATTCGTTTACAGT 59.964 50.000 0.00 0.00 37.61 3.55
922 1011 0.725117 CGGCCCATTCGTTTACAGTC 59.275 55.000 0.00 0.00 0.00 3.51
923 1012 1.092348 GGCCCATTCGTTTACAGTCC 58.908 55.000 0.00 0.00 0.00 3.85
924 1013 1.612199 GGCCCATTCGTTTACAGTCCA 60.612 52.381 0.00 0.00 0.00 4.02
925 1014 1.467342 GCCCATTCGTTTACAGTCCAC 59.533 52.381 0.00 0.00 0.00 4.02
926 1015 1.730064 CCCATTCGTTTACAGTCCACG 59.270 52.381 0.00 0.00 35.18 4.94
927 1016 1.127951 CCATTCGTTTACAGTCCACGC 59.872 52.381 0.34 0.00 33.85 5.34
928 1017 1.795872 CATTCGTTTACAGTCCACGCA 59.204 47.619 0.34 0.00 33.85 5.24
929 1018 1.210870 TTCGTTTACAGTCCACGCAC 58.789 50.000 0.34 0.00 33.85 5.34
930 1019 0.935831 TCGTTTACAGTCCACGCACG 60.936 55.000 0.34 0.00 33.85 5.34
931 1020 1.857364 GTTTACAGTCCACGCACGG 59.143 57.895 0.00 0.00 0.00 4.94
932 1021 1.957186 TTTACAGTCCACGCACGGC 60.957 57.895 0.00 0.00 0.00 5.68
962 1051 1.668047 GGCGGCGGCGGATATATATAC 60.668 57.143 33.02 11.54 41.24 1.47
1015 1116 2.437895 TGATGAGGCTGCTGCTGC 60.438 61.111 21.42 21.42 39.59 5.25
1026 1127 4.673375 CTGCTGCTGGTGGCCCTT 62.673 66.667 0.00 0.00 40.92 3.95
1095 1196 3.521560 CACGTACATAGTTCACATGGCT 58.478 45.455 0.00 0.00 0.00 4.75
1104 1205 0.739462 TTCACATGGCTAAGTCCGCG 60.739 55.000 0.00 0.00 0.00 6.46
1494 1595 4.666253 AAGGGCACGTGCATGGCT 62.666 61.111 38.60 17.16 44.36 4.75
1500 1601 1.968017 CACGTGCATGGCTGGAACT 60.968 57.895 11.36 0.00 0.00 3.01
2070 2171 2.043248 ACCGGCGTGTCCCTCTAT 60.043 61.111 6.01 0.00 0.00 1.98
2157 2258 3.091318 CGGAAATCTCTGCATGCCT 57.909 52.632 16.68 0.00 0.00 4.75
2187 2288 3.068881 CCGGAGAAGGTGCAAGGA 58.931 61.111 0.00 0.00 0.00 3.36
2361 2462 2.501261 GGTGAAAAAGAAGGTACCGCT 58.499 47.619 6.18 5.32 0.00 5.52
2895 2996 1.811266 CCTGTGCGCGCTCAAGTAT 60.811 57.895 32.15 0.00 0.00 2.12
2901 3002 4.412933 GCGCTCAAGTATACGCCA 57.587 55.556 0.00 0.00 45.35 5.69
3129 3230 4.429212 TCCATGTCCGGCGTGACG 62.429 66.667 18.81 0.00 38.11 4.35
3194 3295 2.229302 AGAAGAAGAGCTACACGGTGAC 59.771 50.000 16.29 3.85 0.00 3.67
3294 3395 1.728502 GCGAGTCCGATAGCGATAACC 60.729 57.143 0.00 0.00 40.82 2.85
3309 3410 3.490933 CGATAACCTGGACATGACACGAT 60.491 47.826 0.00 0.00 0.00 3.73
3358 3459 4.609018 AGCGCTGACACCGTTGCT 62.609 61.111 10.39 0.00 0.00 3.91
3402 3503 4.833380 TGTGTAAAATTTGGGGGATTCGAA 59.167 37.500 0.00 0.00 0.00 3.71
3413 3514 1.205055 GGATTCGAAGGAGGGAAGGT 58.795 55.000 3.35 0.00 0.00 3.50
3425 3526 3.646162 GGAGGGAAGGTTGAAAATTTGGT 59.354 43.478 0.00 0.00 0.00 3.67
3426 3527 4.503123 GGAGGGAAGGTTGAAAATTTGGTG 60.503 45.833 0.00 0.00 0.00 4.17
3427 3528 3.390967 AGGGAAGGTTGAAAATTTGGTGG 59.609 43.478 0.00 0.00 0.00 4.61
3429 3530 4.345547 GGGAAGGTTGAAAATTTGGTGGTA 59.654 41.667 0.00 0.00 0.00 3.25
3430 3531 5.294356 GGAAGGTTGAAAATTTGGTGGTAC 58.706 41.667 0.00 0.00 0.00 3.34
3458 3569 8.677300 TCAAATATCTCAAAGTGTCAATAAGGC 58.323 33.333 0.00 0.00 0.00 4.35
3459 3570 7.573968 AATATCTCAAAGTGTCAATAAGGCC 57.426 36.000 0.00 0.00 0.00 5.19
3460 3571 4.640771 TCTCAAAGTGTCAATAAGGCCT 57.359 40.909 0.00 0.00 0.00 5.19
3468 3579 2.852449 TGTCAATAAGGCCTCCCAATCT 59.148 45.455 5.23 0.00 0.00 2.40
3516 3627 5.195940 GAGAAATGGTGATGATGGAAAGGA 58.804 41.667 0.00 0.00 0.00 3.36
3522 3633 5.085920 TGGTGATGATGGAAAGGAATTTGT 58.914 37.500 0.00 0.00 0.00 2.83
3530 3641 4.222336 TGGAAAGGAATTTGTGTGATGGT 58.778 39.130 0.00 0.00 0.00 3.55
3532 3643 4.990426 GGAAAGGAATTTGTGTGATGGTTG 59.010 41.667 0.00 0.00 0.00 3.77
3533 3644 4.605640 AAGGAATTTGTGTGATGGTTGG 57.394 40.909 0.00 0.00 0.00 3.77
3534 3645 3.575805 AGGAATTTGTGTGATGGTTGGT 58.424 40.909 0.00 0.00 0.00 3.67
3535 3646 3.966665 AGGAATTTGTGTGATGGTTGGTT 59.033 39.130 0.00 0.00 0.00 3.67
3536 3647 4.057432 GGAATTTGTGTGATGGTTGGTTG 58.943 43.478 0.00 0.00 0.00 3.77
3537 3648 3.749665 ATTTGTGTGATGGTTGGTTGG 57.250 42.857 0.00 0.00 0.00 3.77
3538 3649 2.443958 TTGTGTGATGGTTGGTTGGA 57.556 45.000 0.00 0.00 0.00 3.53
3539 3650 2.673775 TGTGTGATGGTTGGTTGGAT 57.326 45.000 0.00 0.00 0.00 3.41
3540 3651 2.237643 TGTGTGATGGTTGGTTGGATG 58.762 47.619 0.00 0.00 0.00 3.51
3541 3652 1.545582 GTGTGATGGTTGGTTGGATGG 59.454 52.381 0.00 0.00 0.00 3.51
3542 3653 1.426983 TGTGATGGTTGGTTGGATGGA 59.573 47.619 0.00 0.00 0.00 3.41
3543 3654 2.042842 TGTGATGGTTGGTTGGATGGAT 59.957 45.455 0.00 0.00 0.00 3.41
3544 3655 2.428171 GTGATGGTTGGTTGGATGGATG 59.572 50.000 0.00 0.00 0.00 3.51
3545 3656 2.034124 GATGGTTGGTTGGATGGATGG 58.966 52.381 0.00 0.00 0.00 3.51
3546 3657 0.040942 TGGTTGGTTGGATGGATGGG 59.959 55.000 0.00 0.00 0.00 4.00
3547 3658 0.041090 GGTTGGTTGGATGGATGGGT 59.959 55.000 0.00 0.00 0.00 4.51
3548 3659 1.185315 GTTGGTTGGATGGATGGGTG 58.815 55.000 0.00 0.00 0.00 4.61
3590 3702 0.323451 TCAGTCTCGGCTAGCTTGGA 60.323 55.000 15.72 8.91 0.00 3.53
3595 3707 2.030628 GTCTCGGCTAGCTTGGATAGTC 60.031 54.545 15.72 0.00 0.00 2.59
3613 3732 0.546122 TCGGATTGGGTTGGATCAGG 59.454 55.000 0.00 0.00 0.00 3.86
3617 3736 2.102578 GATTGGGTTGGATCAGGTTGG 58.897 52.381 0.00 0.00 0.00 3.77
3619 3738 0.404040 TGGGTTGGATCAGGTTGGAC 59.596 55.000 0.00 0.00 0.00 4.02
3650 3769 1.959042 CAGTTTCACTGTGGACTGCT 58.041 50.000 22.62 6.71 41.19 4.24
3652 3771 0.308993 GTTTCACTGTGGACTGCTGC 59.691 55.000 8.11 0.00 0.00 5.25
3653 3772 0.107263 TTTCACTGTGGACTGCTGCA 60.107 50.000 8.11 0.88 0.00 4.41
3654 3773 0.107263 TTCACTGTGGACTGCTGCAA 60.107 50.000 8.11 0.00 0.00 4.08
3655 3774 0.815213 TCACTGTGGACTGCTGCAAC 60.815 55.000 8.11 0.00 0.00 4.17
3656 3775 0.816825 CACTGTGGACTGCTGCAACT 60.817 55.000 3.02 0.00 0.00 3.16
3658 3777 0.309922 CTGTGGACTGCTGCAACTTG 59.690 55.000 3.02 0.00 0.00 3.16
3659 3778 0.394216 TGTGGACTGCTGCAACTTGT 60.394 50.000 3.02 0.00 0.00 3.16
3660 3779 1.134250 TGTGGACTGCTGCAACTTGTA 60.134 47.619 3.02 0.00 0.00 2.41
3661 3780 1.532868 GTGGACTGCTGCAACTTGTAG 59.467 52.381 3.02 2.65 33.01 2.74
3662 3781 1.160137 GGACTGCTGCAACTTGTAGG 58.840 55.000 3.02 0.00 30.40 3.18
3663 3782 1.160137 GACTGCTGCAACTTGTAGGG 58.840 55.000 3.02 0.00 30.40 3.53
3664 3783 0.474184 ACTGCTGCAACTTGTAGGGT 59.526 50.000 3.02 0.00 30.40 4.34
3665 3784 0.877071 CTGCTGCAACTTGTAGGGTG 59.123 55.000 3.02 0.00 30.40 4.61
3666 3785 0.182537 TGCTGCAACTTGTAGGGTGT 59.817 50.000 0.00 0.00 30.40 4.16
3667 3786 1.418264 TGCTGCAACTTGTAGGGTGTA 59.582 47.619 0.00 0.00 30.40 2.90
3668 3787 2.158740 TGCTGCAACTTGTAGGGTGTAA 60.159 45.455 0.00 0.00 30.40 2.41
3669 3788 2.882137 GCTGCAACTTGTAGGGTGTAAA 59.118 45.455 8.73 0.00 30.40 2.01
3670 3789 3.058224 GCTGCAACTTGTAGGGTGTAAAG 60.058 47.826 8.73 0.00 30.40 1.85
3671 3790 4.134563 CTGCAACTTGTAGGGTGTAAAGT 58.865 43.478 0.00 0.00 34.40 2.66
3672 3791 3.880490 TGCAACTTGTAGGGTGTAAAGTG 59.120 43.478 0.00 0.00 33.30 3.16
3673 3792 3.881089 GCAACTTGTAGGGTGTAAAGTGT 59.119 43.478 0.00 0.00 33.30 3.55
3688 3807 5.822519 TGTAAAGTGTTCAGTCAGCAATCTT 59.177 36.000 0.00 0.00 0.00 2.40
3698 3819 4.394300 CAGTCAGCAATCTTCCCTGTAAAG 59.606 45.833 0.00 0.00 0.00 1.85
3704 3825 4.762251 GCAATCTTCCCTGTAAAGTGTTCT 59.238 41.667 0.00 0.00 0.00 3.01
3712 3833 7.074653 TCCCTGTAAAGTGTTCTGTCTAAAT 57.925 36.000 0.00 0.00 0.00 1.40
3794 3919 9.617975 GTGAAGATAAAAGAAACAAAGAGATGG 57.382 33.333 0.00 0.00 0.00 3.51
3795 3920 9.354673 TGAAGATAAAAGAAACAAAGAGATGGT 57.645 29.630 0.00 0.00 0.00 3.55
3797 3922 9.971922 AAGATAAAAGAAACAAAGAGATGGTTG 57.028 29.630 0.00 0.00 28.22 3.77
3798 3923 8.579863 AGATAAAAGAAACAAAGAGATGGTTGG 58.420 33.333 0.00 0.00 28.22 3.77
3799 3924 6.544928 AAAAGAAACAAAGAGATGGTTGGT 57.455 33.333 0.00 0.00 28.22 3.67
3800 3925 5.774498 AAGAAACAAAGAGATGGTTGGTC 57.226 39.130 0.00 0.00 28.22 4.02
3801 3926 4.792068 AGAAACAAAGAGATGGTTGGTCA 58.208 39.130 0.00 0.00 28.22 4.02
3802 3927 4.580580 AGAAACAAAGAGATGGTTGGTCAC 59.419 41.667 0.00 0.00 28.22 3.67
3804 3929 2.162681 CAAAGAGATGGTTGGTCACCC 58.837 52.381 0.00 0.00 46.68 4.61
3805 3930 0.698818 AAGAGATGGTTGGTCACCCC 59.301 55.000 0.00 0.00 46.68 4.95
3806 3931 0.178861 AGAGATGGTTGGTCACCCCT 60.179 55.000 0.00 0.00 46.68 4.79
3807 3932 0.253327 GAGATGGTTGGTCACCCCTC 59.747 60.000 0.00 0.00 46.68 4.30
3808 3933 1.208165 AGATGGTTGGTCACCCCTCC 61.208 60.000 0.00 0.00 46.68 4.30
3809 3934 2.211468 GATGGTTGGTCACCCCTCCC 62.211 65.000 0.00 0.00 46.68 4.30
3810 3935 3.658422 GGTTGGTCACCCCTCCCC 61.658 72.222 0.00 0.00 40.19 4.81
3811 3936 3.658422 GTTGGTCACCCCTCCCCC 61.658 72.222 0.00 0.00 0.00 5.40
3812 3937 4.209620 TTGGTCACCCCTCCCCCA 62.210 66.667 0.00 0.00 0.00 4.96
3813 3938 3.759073 TTGGTCACCCCTCCCCCAA 62.759 63.158 0.00 0.00 32.97 4.12
3814 3939 2.861974 GGTCACCCCTCCCCCAAA 60.862 66.667 0.00 0.00 0.00 3.28
3815 3940 2.763902 GTCACCCCTCCCCCAAAG 59.236 66.667 0.00 0.00 0.00 2.77
3816 3941 3.264845 TCACCCCTCCCCCAAAGC 61.265 66.667 0.00 0.00 0.00 3.51
3817 3942 3.589542 CACCCCTCCCCCAAAGCA 61.590 66.667 0.00 0.00 0.00 3.91
3818 3943 2.537959 ACCCCTCCCCCAAAGCAT 60.538 61.111 0.00 0.00 0.00 3.79
3819 3944 1.230482 ACCCCTCCCCCAAAGCATA 60.230 57.895 0.00 0.00 0.00 3.14
3820 3945 1.289244 ACCCCTCCCCCAAAGCATAG 61.289 60.000 0.00 0.00 0.00 2.23
3821 3946 1.289244 CCCCTCCCCCAAAGCATAGT 61.289 60.000 0.00 0.00 0.00 2.12
3822 3947 0.631212 CCCTCCCCCAAAGCATAGTT 59.369 55.000 0.00 0.00 0.00 2.24
3823 3948 1.410224 CCCTCCCCCAAAGCATAGTTC 60.410 57.143 0.00 0.00 0.00 3.01
3824 3949 1.284785 CCTCCCCCAAAGCATAGTTCA 59.715 52.381 0.00 0.00 0.00 3.18
3825 3950 2.648059 CTCCCCCAAAGCATAGTTCAG 58.352 52.381 0.00 0.00 0.00 3.02
3826 3951 1.284785 TCCCCCAAAGCATAGTTCAGG 59.715 52.381 0.00 0.00 0.00 3.86
3827 3952 1.005924 CCCCCAAAGCATAGTTCAGGT 59.994 52.381 0.00 0.00 0.00 4.00
3828 3953 2.369394 CCCCAAAGCATAGTTCAGGTC 58.631 52.381 0.00 0.00 0.00 3.85
3829 3954 2.369394 CCCAAAGCATAGTTCAGGTCC 58.631 52.381 0.00 0.00 0.00 4.46
3830 3955 2.290896 CCCAAAGCATAGTTCAGGTCCA 60.291 50.000 0.00 0.00 0.00 4.02
3831 3956 2.749621 CCAAAGCATAGTTCAGGTCCAC 59.250 50.000 0.00 0.00 0.00 4.02
3832 3957 3.411446 CAAAGCATAGTTCAGGTCCACA 58.589 45.455 0.00 0.00 0.00 4.17
3833 3958 2.770164 AGCATAGTTCAGGTCCACAC 57.230 50.000 0.00 0.00 0.00 3.82
3834 3959 1.977854 AGCATAGTTCAGGTCCACACA 59.022 47.619 0.00 0.00 0.00 3.72
3835 3960 2.076863 GCATAGTTCAGGTCCACACAC 58.923 52.381 0.00 0.00 0.00 3.82
3836 3961 2.289694 GCATAGTTCAGGTCCACACACT 60.290 50.000 0.00 0.00 0.00 3.55
3837 3962 3.807209 GCATAGTTCAGGTCCACACACTT 60.807 47.826 0.00 0.00 0.00 3.16
3838 3963 2.332063 AGTTCAGGTCCACACACTTG 57.668 50.000 0.00 0.00 0.00 3.16
3839 3964 1.134098 AGTTCAGGTCCACACACTTGG 60.134 52.381 0.00 0.00 38.10 3.61
3840 3965 1.134220 GTTCAGGTCCACACACTTGGA 60.134 52.381 0.00 0.00 43.83 3.53
3846 3971 1.388547 TCCACACACTTGGAACTTGC 58.611 50.000 0.00 0.00 43.04 4.01
3847 3972 0.029300 CCACACACTTGGAACTTGCG 59.971 55.000 0.00 0.00 39.24 4.85
3848 3973 0.029300 CACACACTTGGAACTTGCGG 59.971 55.000 0.00 0.00 0.00 5.69
3849 3974 1.008538 CACACTTGGAACTTGCGGC 60.009 57.895 0.00 0.00 0.00 6.53
3850 3975 1.453015 ACACTTGGAACTTGCGGCA 60.453 52.632 0.00 0.00 0.00 5.69
3851 3976 0.823356 ACACTTGGAACTTGCGGCAT 60.823 50.000 2.28 0.00 0.00 4.40
3852 3977 0.314935 CACTTGGAACTTGCGGCATT 59.685 50.000 2.28 0.00 0.00 3.56
3853 3978 1.539388 CACTTGGAACTTGCGGCATTA 59.461 47.619 2.28 0.00 0.00 1.90
3854 3979 1.812571 ACTTGGAACTTGCGGCATTAG 59.187 47.619 2.28 1.08 0.00 1.73
3855 3980 2.083774 CTTGGAACTTGCGGCATTAGA 58.916 47.619 2.28 0.00 0.00 2.10
3856 3981 1.737838 TGGAACTTGCGGCATTAGAG 58.262 50.000 2.28 0.00 0.00 2.43
3857 3982 1.003118 TGGAACTTGCGGCATTAGAGT 59.997 47.619 2.28 0.56 0.00 3.24
3858 3983 2.235155 TGGAACTTGCGGCATTAGAGTA 59.765 45.455 2.28 0.00 0.00 2.59
3859 3984 3.118408 TGGAACTTGCGGCATTAGAGTAT 60.118 43.478 2.28 0.00 0.00 2.12
3860 3985 3.495001 GGAACTTGCGGCATTAGAGTATC 59.505 47.826 2.28 5.12 0.00 2.24
3872 3997 3.553597 GAGTATCTCCAGCCGTTCG 57.446 57.895 0.00 0.00 0.00 3.95
3873 3998 0.595310 GAGTATCTCCAGCCGTTCGC 60.595 60.000 0.00 0.00 37.98 4.70
3874 3999 1.591863 GTATCTCCAGCCGTTCGCC 60.592 63.158 0.00 0.00 38.78 5.54
3875 4000 2.055633 TATCTCCAGCCGTTCGCCA 61.056 57.895 0.00 0.00 38.78 5.69
3876 4001 2.292794 TATCTCCAGCCGTTCGCCAC 62.293 60.000 0.00 0.00 38.78 5.01
3889 4014 4.382541 GCCACCCCTCCCCCAAAG 62.383 72.222 0.00 0.00 0.00 2.77
3890 4015 3.672503 CCACCCCTCCCCCAAAGG 61.673 72.222 0.00 0.00 0.00 3.11
3902 4027 2.967599 CCCAAAGGGCTTGAAATAGC 57.032 50.000 0.00 0.00 37.17 2.97
3903 4028 1.134946 CCCAAAGGGCTTGAAATAGCG 59.865 52.381 0.00 0.00 42.15 4.26
3906 4031 2.715624 GGGCTTGAAATAGCGCCG 59.284 61.111 2.29 0.00 45.37 6.46
3907 4032 2.112815 GGGCTTGAAATAGCGCCGT 61.113 57.895 2.29 0.00 45.37 5.68
3908 4033 1.352056 GGCTTGAAATAGCGCCGTC 59.648 57.895 2.29 0.00 42.15 4.79
3909 4034 1.090052 GGCTTGAAATAGCGCCGTCT 61.090 55.000 2.29 0.00 42.15 4.18
3910 4035 0.026803 GCTTGAAATAGCGCCGTCTG 59.973 55.000 2.29 0.00 0.00 3.51
3911 4036 0.652592 CTTGAAATAGCGCCGTCTGG 59.347 55.000 2.29 0.00 38.77 3.86
3912 4037 0.742990 TTGAAATAGCGCCGTCTGGG 60.743 55.000 2.29 0.00 39.58 4.45
3923 4048 4.736896 GTCTGGGGGCACGTCGAC 62.737 72.222 5.18 5.18 0.00 4.20
3927 4052 3.520862 GGGGGCACGTCGACGATA 61.521 66.667 41.52 0.00 43.02 2.92
3928 4053 2.491152 GGGGCACGTCGACGATAA 59.509 61.111 41.52 0.00 43.02 1.75
3929 4054 1.153784 GGGGCACGTCGACGATAAA 60.154 57.895 41.52 0.00 43.02 1.40
3930 4055 0.529119 GGGGCACGTCGACGATAAAT 60.529 55.000 41.52 18.59 43.02 1.40
3931 4056 1.283736 GGGCACGTCGACGATAAATT 58.716 50.000 41.52 17.80 43.02 1.82
3932 4057 1.257155 GGGCACGTCGACGATAAATTC 59.743 52.381 41.52 21.71 43.02 2.17
3941 4066 1.938861 CGATAAATTCGGCGTGGGG 59.061 57.895 6.85 0.00 44.28 4.96
3942 4067 1.503818 CGATAAATTCGGCGTGGGGG 61.504 60.000 6.85 0.00 44.28 5.40
3943 4068 1.792118 GATAAATTCGGCGTGGGGGC 61.792 60.000 6.85 0.00 37.98 5.80
3953 4078 4.419921 GTGGGGGCGATCGGGTTT 62.420 66.667 18.30 0.00 0.00 3.27
3954 4079 4.104183 TGGGGGCGATCGGGTTTC 62.104 66.667 18.30 0.00 0.00 2.78
3955 4080 4.870012 GGGGGCGATCGGGTTTCC 62.870 72.222 18.30 8.74 0.00 3.13
3956 4081 4.104183 GGGGCGATCGGGTTTCCA 62.104 66.667 18.30 0.00 0.00 3.53
3957 4082 2.513897 GGGCGATCGGGTTTCCAG 60.514 66.667 18.30 0.00 0.00 3.86
3958 4083 3.202706 GGCGATCGGGTTTCCAGC 61.203 66.667 18.30 0.00 0.00 4.85
3959 4084 3.202706 GCGATCGGGTTTCCAGCC 61.203 66.667 18.30 0.00 37.19 4.85
3980 4105 4.028490 GTCCCATGTCGCCCCACA 62.028 66.667 0.00 0.00 0.00 4.17
3981 4106 4.028490 TCCCATGTCGCCCCACAC 62.028 66.667 0.00 0.00 0.00 3.82
3987 4112 4.367023 GTCGCCCCACACGCAGTA 62.367 66.667 0.00 0.00 41.61 2.74
3988 4113 4.367023 TCGCCCCACACGCAGTAC 62.367 66.667 0.00 0.00 41.61 2.73
3989 4114 4.673298 CGCCCCACACGCAGTACA 62.673 66.667 0.00 0.00 41.61 2.90
3990 4115 2.046314 GCCCCACACGCAGTACAT 60.046 61.111 0.00 0.00 41.61 2.29
3991 4116 2.398554 GCCCCACACGCAGTACATG 61.399 63.158 0.00 0.00 41.61 3.21
3992 4117 1.003839 CCCCACACGCAGTACATGT 60.004 57.895 2.69 2.69 41.61 3.21
3993 4118 1.019278 CCCCACACGCAGTACATGTC 61.019 60.000 0.00 0.00 41.61 3.06
3994 4119 1.019278 CCCACACGCAGTACATGTCC 61.019 60.000 0.00 0.00 41.61 4.02
3995 4120 0.320334 CCACACGCAGTACATGTCCA 60.320 55.000 0.00 0.00 41.61 4.02
3996 4121 1.675714 CCACACGCAGTACATGTCCAT 60.676 52.381 0.00 0.00 41.61 3.41
3997 4122 1.394572 CACACGCAGTACATGTCCATG 59.605 52.381 0.00 5.74 41.61 3.66
4007 4132 1.100510 CATGTCCATGTCCAGCTTGG 58.899 55.000 0.00 0.00 42.09 3.61
4008 4133 0.994247 ATGTCCATGTCCAGCTTGGA 59.006 50.000 0.00 0.00 45.98 3.53
4023 4148 6.461110 CAGCTTGGATAGTTGGATCAAATT 57.539 37.500 0.00 0.00 31.96 1.82
4024 4149 6.270815 CAGCTTGGATAGTTGGATCAAATTG 58.729 40.000 0.00 0.00 31.96 2.32
4025 4150 5.045872 GCTTGGATAGTTGGATCAAATTGC 58.954 41.667 0.00 0.00 0.00 3.56
4026 4151 5.394443 GCTTGGATAGTTGGATCAAATTGCA 60.394 40.000 0.00 0.00 0.00 4.08
4027 4152 5.840243 TGGATAGTTGGATCAAATTGCAG 57.160 39.130 0.00 0.00 0.00 4.41
4093 4218 6.501805 AGGGGATGTATCATTAGTCAGCAATA 59.498 38.462 0.00 0.00 0.00 1.90
4109 4234 7.397192 AGTCAGCAATATTCCCTGTAAAATGTT 59.603 33.333 10.75 0.00 0.00 2.71
4200 4325 3.057315 GCTGCAGGAAAGCATAGTTTGAA 60.057 43.478 17.12 0.00 44.68 2.69
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
65 66 2.048222 CTCCTGGCGAACGCTCAA 60.048 61.111 18.14 4.70 41.60 3.02
66 67 4.742201 GCTCCTGGCGAACGCTCA 62.742 66.667 18.14 13.09 41.60 4.26
70 71 1.507141 AAAACTGCTCCTGGCGAACG 61.507 55.000 0.00 0.00 45.43 3.95
77 78 4.821805 TGTTTCCTCTAAAAACTGCTCCTG 59.178 41.667 0.00 0.00 37.48 3.86
106 107 2.736144 TTGAGCGAACGGTGTAATCT 57.264 45.000 3.17 0.00 0.00 2.40
110 111 2.400399 CTCTTTTGAGCGAACGGTGTA 58.600 47.619 3.17 0.00 39.99 2.90
146 147 1.347320 GTCATCCGAGTGAACGAACC 58.653 55.000 0.00 0.00 35.09 3.62
165 166 1.134901 CGACGTTCTCTCACGGAGG 59.865 63.158 0.00 0.00 44.82 4.30
186 187 3.812656 TCTTTAACACCGCAAATAACGC 58.187 40.909 0.00 0.00 0.00 4.84
191 192 6.681616 TGTGATGTTTCTTTAACACCGCAAAT 60.682 34.615 0.00 0.00 45.50 2.32
192 193 5.393135 TGTGATGTTTCTTTAACACCGCAAA 60.393 36.000 0.00 0.00 45.50 3.68
217 218 1.597854 GGCAGCTTTTTGTTGGGGC 60.598 57.895 0.00 0.00 0.00 5.80
220 221 0.103937 TTCGGGCAGCTTTTTGTTGG 59.896 50.000 0.00 0.00 0.00 3.77
242 243 0.867086 CCCCATTTGTTTTTGCTGCG 59.133 50.000 0.00 0.00 0.00 5.18
257 258 3.142028 ACATTCCCTTCTTCTTTTCCCCA 59.858 43.478 0.00 0.00 0.00 4.96
301 302 0.109412 AGACTCGCTAAAACGACGGG 60.109 55.000 0.00 0.00 37.09 5.28
325 326 9.322773 CATATTCTGTATCTCTTCACATTGTGT 57.677 33.333 16.06 0.00 34.79 3.72
328 329 8.152898 TCCCATATTCTGTATCTCTTCACATTG 58.847 37.037 0.00 0.00 0.00 2.82
332 333 6.295575 CCCTCCCATATTCTGTATCTCTTCAC 60.296 46.154 0.00 0.00 0.00 3.18
333 334 5.782331 CCCTCCCATATTCTGTATCTCTTCA 59.218 44.000 0.00 0.00 0.00 3.02
337 338 5.087323 TGTCCCTCCCATATTCTGTATCTC 58.913 45.833 0.00 0.00 0.00 2.75
338 339 5.090139 CTGTCCCTCCCATATTCTGTATCT 58.910 45.833 0.00 0.00 0.00 1.98
339 340 5.046950 GTCTGTCCCTCCCATATTCTGTATC 60.047 48.000 0.00 0.00 0.00 2.24
355 386 4.538746 AAGTTTAGCTAGTGTCTGTCCC 57.461 45.455 0.00 0.00 0.00 4.46
439 484 1.416434 GCTTTCAGTGTACGCGAGC 59.584 57.895 15.93 3.49 0.00 5.03
649 713 4.080863 AGGAGTAAAGATGTCCATGGTGAC 60.081 45.833 12.58 3.89 35.77 3.67
650 714 4.104086 AGGAGTAAAGATGTCCATGGTGA 58.896 43.478 12.58 0.00 32.23 4.02
651 715 4.446371 GAGGAGTAAAGATGTCCATGGTG 58.554 47.826 12.58 0.00 32.23 4.17
652 716 3.456277 GGAGGAGTAAAGATGTCCATGGT 59.544 47.826 12.58 0.00 32.23 3.55
653 717 3.181450 GGGAGGAGTAAAGATGTCCATGG 60.181 52.174 4.97 4.97 32.23 3.66
655 719 3.456277 GTGGGAGGAGTAAAGATGTCCAT 59.544 47.826 0.00 0.00 32.23 3.41
656 720 2.838202 GTGGGAGGAGTAAAGATGTCCA 59.162 50.000 0.00 0.00 32.23 4.02
657 721 2.170817 GGTGGGAGGAGTAAAGATGTCC 59.829 54.545 0.00 0.00 0.00 4.02
658 722 2.159085 CGGTGGGAGGAGTAAAGATGTC 60.159 54.545 0.00 0.00 0.00 3.06
659 723 1.831736 CGGTGGGAGGAGTAAAGATGT 59.168 52.381 0.00 0.00 0.00 3.06
660 724 1.139058 CCGGTGGGAGGAGTAAAGATG 59.861 57.143 0.00 0.00 34.06 2.90
661 725 1.497161 CCGGTGGGAGGAGTAAAGAT 58.503 55.000 0.00 0.00 34.06 2.40
662 726 1.262640 GCCGGTGGGAGGAGTAAAGA 61.263 60.000 1.90 0.00 34.06 2.52
663 727 1.221021 GCCGGTGGGAGGAGTAAAG 59.779 63.158 1.90 0.00 34.06 1.85
664 728 2.295602 GGCCGGTGGGAGGAGTAAA 61.296 63.158 1.90 0.00 34.06 2.01
665 729 2.686106 GGCCGGTGGGAGGAGTAA 60.686 66.667 1.90 0.00 34.06 2.24
666 730 1.877672 TAAGGCCGGTGGGAGGAGTA 61.878 60.000 1.90 0.00 34.06 2.59
667 731 2.758852 TTAAGGCCGGTGGGAGGAGT 62.759 60.000 1.90 0.00 34.06 3.85
668 732 1.345715 ATTAAGGCCGGTGGGAGGAG 61.346 60.000 1.90 0.00 34.06 3.69
669 733 0.917333 AATTAAGGCCGGTGGGAGGA 60.917 55.000 1.90 0.00 34.06 3.71
670 734 0.033503 AAATTAAGGCCGGTGGGAGG 60.034 55.000 1.90 0.00 34.06 4.30
671 735 1.389555 GAAATTAAGGCCGGTGGGAG 58.610 55.000 1.90 0.00 34.06 4.30
672 736 0.033894 GGAAATTAAGGCCGGTGGGA 60.034 55.000 1.90 0.00 34.06 4.37
673 737 0.033503 AGGAAATTAAGGCCGGTGGG 60.034 55.000 1.90 0.00 0.00 4.61
674 738 1.749063 GAAGGAAATTAAGGCCGGTGG 59.251 52.381 1.90 0.00 0.00 4.61
675 739 1.400494 CGAAGGAAATTAAGGCCGGTG 59.600 52.381 1.90 0.00 0.00 4.94
676 740 1.279846 TCGAAGGAAATTAAGGCCGGT 59.720 47.619 1.90 0.00 0.00 5.28
677 741 1.669265 GTCGAAGGAAATTAAGGCCGG 59.331 52.381 0.00 0.00 0.00 6.13
678 742 2.095372 GTGTCGAAGGAAATTAAGGCCG 59.905 50.000 0.00 0.00 0.00 6.13
679 743 3.344515 AGTGTCGAAGGAAATTAAGGCC 58.655 45.455 0.00 0.00 0.00 5.19
680 744 4.723248 CAAGTGTCGAAGGAAATTAAGGC 58.277 43.478 0.00 0.00 0.00 4.35
681 745 4.379499 GGCAAGTGTCGAAGGAAATTAAGG 60.379 45.833 0.00 0.00 0.00 2.69
682 746 4.379499 GGGCAAGTGTCGAAGGAAATTAAG 60.379 45.833 0.00 0.00 0.00 1.85
683 747 3.504520 GGGCAAGTGTCGAAGGAAATTAA 59.495 43.478 0.00 0.00 0.00 1.40
684 748 3.078837 GGGCAAGTGTCGAAGGAAATTA 58.921 45.455 0.00 0.00 0.00 1.40
685 749 1.886542 GGGCAAGTGTCGAAGGAAATT 59.113 47.619 0.00 0.00 0.00 1.82
686 750 1.073923 AGGGCAAGTGTCGAAGGAAAT 59.926 47.619 0.00 0.00 0.00 2.17
687 751 0.472471 AGGGCAAGTGTCGAAGGAAA 59.528 50.000 0.00 0.00 0.00 3.13
688 752 0.034896 GAGGGCAAGTGTCGAAGGAA 59.965 55.000 0.00 0.00 0.00 3.36
689 753 1.118965 TGAGGGCAAGTGTCGAAGGA 61.119 55.000 0.00 0.00 0.00 3.36
690 754 0.250295 TTGAGGGCAAGTGTCGAAGG 60.250 55.000 0.00 0.00 0.00 3.46
691 755 1.151668 CTTGAGGGCAAGTGTCGAAG 58.848 55.000 0.00 0.00 45.10 3.79
692 756 3.305709 CTTGAGGGCAAGTGTCGAA 57.694 52.632 0.00 0.00 45.10 3.71
702 782 2.164422 GGTTAAGTGATTGCTTGAGGGC 59.836 50.000 0.00 0.00 0.00 5.19
746 826 1.071605 GTGCGTGCTACAAGAAGAGG 58.928 55.000 0.00 0.00 0.00 3.69
749 829 1.130613 GCGTGCGTGCTACAAGAAG 59.869 57.895 0.00 0.00 0.00 2.85
750 830 1.592939 TGCGTGCGTGCTACAAGAA 60.593 52.632 1.52 0.00 35.36 2.52
752 832 2.170985 GTGCGTGCGTGCTACAAG 59.829 61.111 1.52 0.00 35.36 3.16
753 833 3.342627 GGTGCGTGCGTGCTACAA 61.343 61.111 1.52 0.00 35.36 2.41
754 834 4.593864 TGGTGCGTGCGTGCTACA 62.594 61.111 1.52 0.00 35.36 2.74
755 835 3.342627 TTGGTGCGTGCGTGCTAC 61.343 61.111 1.52 0.00 35.36 3.58
756 836 3.342627 GTTGGTGCGTGCGTGCTA 61.343 61.111 1.52 0.00 35.36 3.49
759 839 3.882013 TTGGTTGGTGCGTGCGTG 61.882 61.111 0.00 0.00 0.00 5.34
760 840 3.883180 GTTGGTTGGTGCGTGCGT 61.883 61.111 0.00 0.00 0.00 5.24
761 841 3.582120 AGTTGGTTGGTGCGTGCG 61.582 61.111 0.00 0.00 0.00 5.34
762 842 2.026014 CAGTTGGTTGGTGCGTGC 59.974 61.111 0.00 0.00 0.00 5.34
763 843 1.355210 GACAGTTGGTTGGTGCGTG 59.645 57.895 0.00 0.00 0.00 5.34
764 844 1.822186 GGACAGTTGGTTGGTGCGT 60.822 57.895 0.00 0.00 0.00 5.24
765 845 1.172180 ATGGACAGTTGGTTGGTGCG 61.172 55.000 0.00 0.00 0.00 5.34
766 846 0.598065 GATGGACAGTTGGTTGGTGC 59.402 55.000 0.00 0.00 0.00 5.01
767 847 2.276732 AGATGGACAGTTGGTTGGTG 57.723 50.000 0.00 0.00 0.00 4.17
835 924 6.088016 ACAAGGACGCGTGGTTATATATAA 57.912 37.500 20.70 0.81 0.00 0.98
898 987 0.956410 TAAACGAATGGGCCGTGGTG 60.956 55.000 0.00 0.00 40.44 4.17
907 996 1.127951 GCGTGGACTGTAAACGAATGG 59.872 52.381 16.19 0.00 39.64 3.16
908 997 1.795872 TGCGTGGACTGTAAACGAATG 59.204 47.619 16.19 0.00 39.64 2.67
909 998 1.796459 GTGCGTGGACTGTAAACGAAT 59.204 47.619 16.19 0.00 39.64 3.34
910 999 1.210870 GTGCGTGGACTGTAAACGAA 58.789 50.000 16.19 5.32 39.64 3.85
911 1000 0.935831 CGTGCGTGGACTGTAAACGA 60.936 55.000 16.19 2.29 39.64 3.85
912 1001 1.485514 CGTGCGTGGACTGTAAACG 59.514 57.895 9.61 9.61 40.22 3.60
913 1002 1.857364 CCGTGCGTGGACTGTAAAC 59.143 57.895 0.00 0.00 0.00 2.01
914 1003 1.957186 GCCGTGCGTGGACTGTAAA 60.957 57.895 0.00 0.00 0.00 2.01
915 1004 2.356553 GCCGTGCGTGGACTGTAA 60.357 61.111 0.00 0.00 0.00 2.41
941 1030 2.416244 ATATATATCCGCCGCCGCCG 62.416 60.000 0.00 0.00 0.00 6.46
942 1031 0.599558 TATATATATCCGCCGCCGCC 59.400 55.000 0.00 0.00 0.00 6.13
943 1032 1.668047 GGTATATATATCCGCCGCCGC 60.668 57.143 0.00 0.00 0.00 6.53
944 1033 1.884579 AGGTATATATATCCGCCGCCG 59.115 52.381 0.00 0.00 0.00 6.46
945 1034 3.319972 TCAAGGTATATATATCCGCCGCC 59.680 47.826 0.00 0.00 0.00 6.13
946 1035 4.296690 GTCAAGGTATATATATCCGCCGC 58.703 47.826 0.00 0.00 0.00 6.53
947 1036 4.534168 CGTCAAGGTATATATATCCGCCG 58.466 47.826 0.00 0.00 0.00 6.46
948 1037 4.296690 GCGTCAAGGTATATATATCCGCC 58.703 47.826 11.22 1.14 0.00 6.13
949 1038 3.973135 CGCGTCAAGGTATATATATCCGC 59.027 47.826 11.92 11.92 0.00 5.54
988 1077 2.366533 CAGCCTCATCAGCATCTTGTT 58.633 47.619 0.00 0.00 0.00 2.83
1275 1376 3.948719 GGGTTCACGGCCAGGACA 61.949 66.667 2.24 0.00 0.00 4.02
1356 1457 4.021925 GACTGCGGGAACAGGCCT 62.022 66.667 0.00 0.00 40.02 5.19
1494 1595 2.035961 CGAGGAGTTGAAGTCAGTTCCA 59.964 50.000 2.06 0.00 34.56 3.53
1497 1598 1.270358 GCCGAGGAGTTGAAGTCAGTT 60.270 52.381 2.06 0.00 0.00 3.16
1500 1601 0.832135 AGGCCGAGGAGTTGAAGTCA 60.832 55.000 0.00 0.00 0.00 3.41
1551 1652 3.149648 GCCTCGTAGCCCCGGTTA 61.150 66.667 0.00 0.00 0.00 2.85
2361 2462 8.405418 ACTCGGATGCTATGTAAGACTTTATA 57.595 34.615 0.00 0.00 0.00 0.98
2703 2804 0.393944 AGTAGGCGGTCGTCATGAGA 60.394 55.000 0.00 0.00 0.00 3.27
2895 2996 1.425267 CGGCGATCATGTTTGGCGTA 61.425 55.000 24.57 0.00 44.18 4.42
2901 3002 2.819595 AGCGCGGCGATCATGTTT 60.820 55.556 28.54 0.00 0.00 2.83
3148 3249 2.357517 CGCCGTGAACTCCAGCTT 60.358 61.111 0.00 0.00 0.00 3.74
3294 3395 1.858091 GCCTATCGTGTCATGTCCAG 58.142 55.000 0.00 0.00 0.00 3.86
3402 3503 3.903714 CCAAATTTTCAACCTTCCCTCCT 59.096 43.478 0.00 0.00 0.00 3.69
3413 3514 6.546428 TTTGAGGTACCACCAAATTTTCAA 57.454 33.333 21.36 13.46 41.95 2.69
3425 3526 7.016153 ACACTTTGAGATATTTGAGGTACCA 57.984 36.000 15.94 0.00 0.00 3.25
3426 3527 7.103641 TGACACTTTGAGATATTTGAGGTACC 58.896 38.462 2.73 2.73 0.00 3.34
3427 3528 8.547967 TTGACACTTTGAGATATTTGAGGTAC 57.452 34.615 0.00 0.00 0.00 3.34
3429 3530 9.739276 TTATTGACACTTTGAGATATTTGAGGT 57.261 29.630 0.00 0.00 0.00 3.85
3468 3579 7.730784 TCCCCCAAATCACAATCTAAAAGTTAA 59.269 33.333 0.00 0.00 0.00 2.01
3516 3627 3.708631 TCCAACCAACCATCACACAAATT 59.291 39.130 0.00 0.00 0.00 1.82
3522 3633 1.426983 TCCATCCAACCAACCATCACA 59.573 47.619 0.00 0.00 0.00 3.58
3530 3641 0.783206 ACACCCATCCATCCAACCAA 59.217 50.000 0.00 0.00 0.00 3.67
3532 3643 1.185315 CAACACCCATCCATCCAACC 58.815 55.000 0.00 0.00 0.00 3.77
3533 3644 0.532115 GCAACACCCATCCATCCAAC 59.468 55.000 0.00 0.00 0.00 3.77
3534 3645 0.409092 AGCAACACCCATCCATCCAA 59.591 50.000 0.00 0.00 0.00 3.53
3535 3646 0.409092 AAGCAACACCCATCCATCCA 59.591 50.000 0.00 0.00 0.00 3.41
3536 3647 1.478105 GAAAGCAACACCCATCCATCC 59.522 52.381 0.00 0.00 0.00 3.51
3537 3648 2.450476 AGAAAGCAACACCCATCCATC 58.550 47.619 0.00 0.00 0.00 3.51
3538 3649 2.564062 CAAGAAAGCAACACCCATCCAT 59.436 45.455 0.00 0.00 0.00 3.41
3539 3650 1.962807 CAAGAAAGCAACACCCATCCA 59.037 47.619 0.00 0.00 0.00 3.41
3540 3651 1.273327 CCAAGAAAGCAACACCCATCC 59.727 52.381 0.00 0.00 0.00 3.51
3541 3652 2.238521 TCCAAGAAAGCAACACCCATC 58.761 47.619 0.00 0.00 0.00 3.51
3542 3653 2.380064 TCCAAGAAAGCAACACCCAT 57.620 45.000 0.00 0.00 0.00 4.00
3543 3654 2.151502 TTCCAAGAAAGCAACACCCA 57.848 45.000 0.00 0.00 0.00 4.51
3544 3655 2.627699 TGATTCCAAGAAAGCAACACCC 59.372 45.455 0.00 0.00 0.00 4.61
3545 3656 4.320608 TTGATTCCAAGAAAGCAACACC 57.679 40.909 0.00 0.00 30.15 4.16
3546 3657 6.849588 AATTTGATTCCAAGAAAGCAACAC 57.150 33.333 0.00 0.00 34.53 3.32
3547 3658 8.366401 TGATAATTTGATTCCAAGAAAGCAACA 58.634 29.630 0.00 0.00 34.53 3.33
3548 3659 8.761575 TGATAATTTGATTCCAAGAAAGCAAC 57.238 30.769 0.00 0.00 34.53 4.17
3578 3689 0.039074 CCGACTATCCAAGCTAGCCG 60.039 60.000 12.13 2.51 0.00 5.52
3590 3702 3.045634 TGATCCAACCCAATCCGACTAT 58.954 45.455 0.00 0.00 0.00 2.12
3595 3707 0.255890 ACCTGATCCAACCCAATCCG 59.744 55.000 0.00 0.00 0.00 4.18
3634 3753 0.107263 TGCAGCAGTCCACAGTGAAA 60.107 50.000 0.62 0.00 0.00 2.69
3636 3755 0.815213 GTTGCAGCAGTCCACAGTGA 60.815 55.000 0.62 0.00 0.00 3.41
3643 3762 1.160137 CCTACAAGTTGCAGCAGTCC 58.840 55.000 2.55 0.00 0.00 3.85
3645 3764 0.474184 ACCCTACAAGTTGCAGCAGT 59.526 50.000 2.55 3.58 0.00 4.40
3646 3765 0.877071 CACCCTACAAGTTGCAGCAG 59.123 55.000 2.55 0.00 0.00 4.24
3647 3766 0.182537 ACACCCTACAAGTTGCAGCA 59.817 50.000 2.55 0.00 0.00 4.41
3648 3767 2.178912 TACACCCTACAAGTTGCAGC 57.821 50.000 1.81 0.00 0.00 5.25
3649 3768 4.024048 CACTTTACACCCTACAAGTTGCAG 60.024 45.833 1.81 0.00 0.00 4.41
3650 3769 3.880490 CACTTTACACCCTACAAGTTGCA 59.120 43.478 1.81 0.00 0.00 4.08
3652 3771 5.587043 TGAACACTTTACACCCTACAAGTTG 59.413 40.000 0.00 0.00 0.00 3.16
3653 3772 5.747342 TGAACACTTTACACCCTACAAGTT 58.253 37.500 0.00 0.00 0.00 2.66
3654 3773 5.104652 ACTGAACACTTTACACCCTACAAGT 60.105 40.000 0.00 0.00 0.00 3.16
3655 3774 5.365619 ACTGAACACTTTACACCCTACAAG 58.634 41.667 0.00 0.00 0.00 3.16
3656 3775 5.104859 TGACTGAACACTTTACACCCTACAA 60.105 40.000 0.00 0.00 0.00 2.41
3658 3777 4.952460 TGACTGAACACTTTACACCCTAC 58.048 43.478 0.00 0.00 0.00 3.18
3659 3778 4.502604 GCTGACTGAACACTTTACACCCTA 60.503 45.833 0.00 0.00 0.00 3.53
3660 3779 3.744530 GCTGACTGAACACTTTACACCCT 60.745 47.826 0.00 0.00 0.00 4.34
3661 3780 2.548480 GCTGACTGAACACTTTACACCC 59.452 50.000 0.00 0.00 0.00 4.61
3662 3781 3.202906 TGCTGACTGAACACTTTACACC 58.797 45.455 0.00 0.00 0.00 4.16
3663 3782 4.875544 TTGCTGACTGAACACTTTACAC 57.124 40.909 0.00 0.00 0.00 2.90
3664 3783 5.368145 AGATTGCTGACTGAACACTTTACA 58.632 37.500 0.00 0.00 0.00 2.41
3665 3784 5.931441 AGATTGCTGACTGAACACTTTAC 57.069 39.130 0.00 0.00 0.00 2.01
3666 3785 5.470098 GGAAGATTGCTGACTGAACACTTTA 59.530 40.000 0.00 0.00 0.00 1.85
3667 3786 4.276926 GGAAGATTGCTGACTGAACACTTT 59.723 41.667 0.00 0.00 0.00 2.66
3668 3787 3.817647 GGAAGATTGCTGACTGAACACTT 59.182 43.478 0.00 0.00 0.00 3.16
3669 3788 3.406764 GGAAGATTGCTGACTGAACACT 58.593 45.455 0.00 0.00 0.00 3.55
3670 3789 2.485814 GGGAAGATTGCTGACTGAACAC 59.514 50.000 0.00 0.00 0.00 3.32
3671 3790 2.373169 AGGGAAGATTGCTGACTGAACA 59.627 45.455 0.00 0.00 0.00 3.18
3672 3791 2.746362 CAGGGAAGATTGCTGACTGAAC 59.254 50.000 0.00 0.00 0.00 3.18
3673 3792 2.373169 ACAGGGAAGATTGCTGACTGAA 59.627 45.455 0.00 0.00 0.00 3.02
3688 3807 6.488769 TTTAGACAGAACACTTTACAGGGA 57.511 37.500 0.00 0.00 0.00 4.20
3798 3923 2.763902 CTTTGGGGGAGGGGTGAC 59.236 66.667 0.00 0.00 0.00 3.67
3799 3924 3.264845 GCTTTGGGGGAGGGGTGA 61.265 66.667 0.00 0.00 0.00 4.02
3800 3925 1.580066 TATGCTTTGGGGGAGGGGTG 61.580 60.000 0.00 0.00 0.00 4.61
3801 3926 1.230482 TATGCTTTGGGGGAGGGGT 60.230 57.895 0.00 0.00 0.00 4.95
3802 3927 1.289244 ACTATGCTTTGGGGGAGGGG 61.289 60.000 0.00 0.00 0.00 4.79
3803 3928 0.631212 AACTATGCTTTGGGGGAGGG 59.369 55.000 0.00 0.00 0.00 4.30
3804 3929 1.284785 TGAACTATGCTTTGGGGGAGG 59.715 52.381 0.00 0.00 0.00 4.30
3805 3930 2.648059 CTGAACTATGCTTTGGGGGAG 58.352 52.381 0.00 0.00 0.00 4.30
3806 3931 1.284785 CCTGAACTATGCTTTGGGGGA 59.715 52.381 0.00 0.00 0.00 4.81
3807 3932 1.005924 ACCTGAACTATGCTTTGGGGG 59.994 52.381 0.00 0.00 0.00 5.40
3808 3933 2.369394 GACCTGAACTATGCTTTGGGG 58.631 52.381 0.00 0.00 0.00 4.96
3809 3934 2.290896 TGGACCTGAACTATGCTTTGGG 60.291 50.000 0.00 0.00 0.00 4.12
3810 3935 2.749621 GTGGACCTGAACTATGCTTTGG 59.250 50.000 0.00 0.00 0.00 3.28
3811 3936 3.189287 GTGTGGACCTGAACTATGCTTTG 59.811 47.826 0.00 0.00 0.00 2.77
3812 3937 3.181445 TGTGTGGACCTGAACTATGCTTT 60.181 43.478 0.00 0.00 0.00 3.51
3813 3938 2.371841 TGTGTGGACCTGAACTATGCTT 59.628 45.455 0.00 0.00 0.00 3.91
3814 3939 1.977854 TGTGTGGACCTGAACTATGCT 59.022 47.619 0.00 0.00 0.00 3.79
3815 3940 2.076863 GTGTGTGGACCTGAACTATGC 58.923 52.381 0.00 0.00 0.00 3.14
3816 3941 3.685139 AGTGTGTGGACCTGAACTATG 57.315 47.619 0.00 0.00 0.00 2.23
3817 3942 3.244561 CCAAGTGTGTGGACCTGAACTAT 60.245 47.826 0.00 0.00 41.65 2.12
3818 3943 2.104111 CCAAGTGTGTGGACCTGAACTA 59.896 50.000 0.00 0.00 41.65 2.24
3819 3944 1.134098 CCAAGTGTGTGGACCTGAACT 60.134 52.381 0.00 0.00 41.65 3.01
3820 3945 1.134220 TCCAAGTGTGTGGACCTGAAC 60.134 52.381 0.00 0.00 42.97 3.18
3821 3946 1.208706 TCCAAGTGTGTGGACCTGAA 58.791 50.000 0.00 0.00 42.97 3.02
3822 3947 2.923619 TCCAAGTGTGTGGACCTGA 58.076 52.632 0.00 0.00 42.97 3.86
3827 3952 1.388547 GCAAGTTCCAAGTGTGTGGA 58.611 50.000 0.00 0.00 46.24 4.02
3828 3953 0.029300 CGCAAGTTCCAAGTGTGTGG 59.971 55.000 0.00 0.00 40.33 4.17
3829 3954 0.029300 CCGCAAGTTCCAAGTGTGTG 59.971 55.000 0.00 0.00 0.00 3.82
3830 3955 1.724582 GCCGCAAGTTCCAAGTGTGT 61.725 55.000 0.00 0.00 0.00 3.72
3831 3956 1.008538 GCCGCAAGTTCCAAGTGTG 60.009 57.895 0.00 0.00 0.00 3.82
3832 3957 0.823356 ATGCCGCAAGTTCCAAGTGT 60.823 50.000 0.00 0.00 0.00 3.55
3833 3958 0.314935 AATGCCGCAAGTTCCAAGTG 59.685 50.000 0.00 0.00 0.00 3.16
3834 3959 1.812571 CTAATGCCGCAAGTTCCAAGT 59.187 47.619 0.00 0.00 0.00 3.16
3835 3960 2.083774 TCTAATGCCGCAAGTTCCAAG 58.916 47.619 0.00 0.00 0.00 3.61
3836 3961 2.083774 CTCTAATGCCGCAAGTTCCAA 58.916 47.619 0.00 0.00 0.00 3.53
3837 3962 1.003118 ACTCTAATGCCGCAAGTTCCA 59.997 47.619 0.00 0.00 0.00 3.53
3838 3963 1.739067 ACTCTAATGCCGCAAGTTCC 58.261 50.000 0.00 0.00 0.00 3.62
3839 3964 4.372656 AGATACTCTAATGCCGCAAGTTC 58.627 43.478 0.00 0.00 0.00 3.01
3840 3965 4.372656 GAGATACTCTAATGCCGCAAGTT 58.627 43.478 0.00 0.00 0.00 2.66
3841 3966 3.243907 GGAGATACTCTAATGCCGCAAGT 60.244 47.826 0.00 0.00 0.00 3.16
3842 3967 3.243873 TGGAGATACTCTAATGCCGCAAG 60.244 47.826 0.00 0.00 0.00 4.01
3843 3968 2.698274 TGGAGATACTCTAATGCCGCAA 59.302 45.455 0.00 0.00 0.00 4.85
3844 3969 2.297315 CTGGAGATACTCTAATGCCGCA 59.703 50.000 0.00 0.00 0.00 5.69
3845 3970 2.928731 GCTGGAGATACTCTAATGCCGC 60.929 54.545 0.00 0.00 0.00 6.53
3846 3971 2.353208 GGCTGGAGATACTCTAATGCCG 60.353 54.545 0.00 0.00 0.00 5.69
3847 3972 2.353208 CGGCTGGAGATACTCTAATGCC 60.353 54.545 0.00 0.00 32.80 4.40
3848 3973 2.297597 ACGGCTGGAGATACTCTAATGC 59.702 50.000 0.00 0.00 0.00 3.56
3849 3974 4.551388 GAACGGCTGGAGATACTCTAATG 58.449 47.826 0.00 0.00 0.00 1.90
3850 3975 3.253677 CGAACGGCTGGAGATACTCTAAT 59.746 47.826 0.00 0.00 0.00 1.73
3851 3976 2.617308 CGAACGGCTGGAGATACTCTAA 59.383 50.000 0.00 0.00 0.00 2.10
3852 3977 2.219458 CGAACGGCTGGAGATACTCTA 58.781 52.381 0.00 0.00 0.00 2.43
3853 3978 1.025812 CGAACGGCTGGAGATACTCT 58.974 55.000 0.00 0.00 0.00 3.24
3854 3979 0.595310 GCGAACGGCTGGAGATACTC 60.595 60.000 0.00 0.00 39.11 2.59
3855 3980 1.437986 GCGAACGGCTGGAGATACT 59.562 57.895 0.00 0.00 39.11 2.12
3856 3981 1.591863 GGCGAACGGCTGGAGATAC 60.592 63.158 13.15 0.00 42.94 2.24
3857 3982 2.055633 TGGCGAACGGCTGGAGATA 61.056 57.895 20.00 0.00 42.94 1.98
3858 3983 3.390521 TGGCGAACGGCTGGAGAT 61.391 61.111 20.00 0.00 42.94 2.75
3859 3984 4.373116 GTGGCGAACGGCTGGAGA 62.373 66.667 20.00 0.00 42.94 3.71
3872 3997 4.382541 CTTTGGGGGAGGGGTGGC 62.383 72.222 0.00 0.00 0.00 5.01
3873 3998 3.672503 CCTTTGGGGGAGGGGTGG 61.673 72.222 0.00 0.00 0.00 4.61
3884 4009 1.469767 GCGCTATTTCAAGCCCTTTGG 60.470 52.381 0.00 0.00 39.43 3.28
3885 4010 1.469767 GGCGCTATTTCAAGCCCTTTG 60.470 52.381 7.64 0.00 43.54 2.77
3886 4011 0.817654 GGCGCTATTTCAAGCCCTTT 59.182 50.000 7.64 0.00 43.54 3.11
3887 4012 1.376609 CGGCGCTATTTCAAGCCCTT 61.377 55.000 7.64 0.00 46.36 3.95
3888 4013 1.819632 CGGCGCTATTTCAAGCCCT 60.820 57.895 7.64 0.00 46.36 5.19
3889 4014 2.048312 GACGGCGCTATTTCAAGCCC 62.048 60.000 6.90 0.00 46.36 5.19
3890 4015 1.090052 AGACGGCGCTATTTCAAGCC 61.090 55.000 6.90 0.00 45.67 4.35
3891 4016 0.026803 CAGACGGCGCTATTTCAAGC 59.973 55.000 6.90 0.00 39.21 4.01
3892 4017 0.652592 CCAGACGGCGCTATTTCAAG 59.347 55.000 6.90 0.00 0.00 3.02
3893 4018 0.742990 CCCAGACGGCGCTATTTCAA 60.743 55.000 6.90 0.00 0.00 2.69
3894 4019 1.153449 CCCAGACGGCGCTATTTCA 60.153 57.895 6.90 0.00 0.00 2.69
3895 4020 1.887707 CCCCAGACGGCGCTATTTC 60.888 63.158 6.90 0.00 0.00 2.17
3896 4021 2.189521 CCCCAGACGGCGCTATTT 59.810 61.111 6.90 0.00 0.00 1.40
3897 4022 3.861797 CCCCCAGACGGCGCTATT 61.862 66.667 6.90 0.00 0.00 1.73
3906 4031 4.736896 GTCGACGTGCCCCCAGAC 62.737 72.222 0.00 0.00 0.00 3.51
3910 4035 2.561549 TTTATCGTCGACGTGCCCCC 62.562 60.000 34.40 0.00 40.80 5.40
3911 4036 0.529119 ATTTATCGTCGACGTGCCCC 60.529 55.000 34.40 0.00 40.80 5.80
3912 4037 1.257155 GAATTTATCGTCGACGTGCCC 59.743 52.381 34.40 15.89 40.80 5.36
3913 4038 1.072348 CGAATTTATCGTCGACGTGCC 60.072 52.381 34.40 17.24 46.52 5.01
3914 4039 2.244923 CGAATTTATCGTCGACGTGC 57.755 50.000 34.40 15.07 46.52 5.34
3924 4049 1.792118 GCCCCCACGCCGAATTTATC 61.792 60.000 0.00 0.00 0.00 1.75
3925 4050 1.826487 GCCCCCACGCCGAATTTAT 60.826 57.895 0.00 0.00 0.00 1.40
3926 4051 2.438795 GCCCCCACGCCGAATTTA 60.439 61.111 0.00 0.00 0.00 1.40
3936 4061 4.419921 AAACCCGATCGCCCCCAC 62.420 66.667 10.32 0.00 0.00 4.61
3937 4062 4.104183 GAAACCCGATCGCCCCCA 62.104 66.667 10.32 0.00 0.00 4.96
3938 4063 4.870012 GGAAACCCGATCGCCCCC 62.870 72.222 10.32 2.12 0.00 5.40
3939 4064 4.104183 TGGAAACCCGATCGCCCC 62.104 66.667 10.32 6.10 0.00 5.80
3940 4065 2.513897 CTGGAAACCCGATCGCCC 60.514 66.667 10.32 5.75 0.00 6.13
3941 4066 3.202706 GCTGGAAACCCGATCGCC 61.203 66.667 10.32 5.62 0.00 5.54
3942 4067 3.202706 GGCTGGAAACCCGATCGC 61.203 66.667 10.32 0.00 0.00 4.58
3963 4088 4.028490 TGTGGGGCGACATGGGAC 62.028 66.667 0.00 0.00 0.00 4.46
3964 4089 4.028490 GTGTGGGGCGACATGGGA 62.028 66.667 0.00 0.00 0.00 4.37
3970 4095 4.367023 TACTGCGTGTGGGGCGAC 62.367 66.667 0.00 0.00 0.00 5.19
3971 4096 4.367023 GTACTGCGTGTGGGGCGA 62.367 66.667 0.00 0.00 0.00 5.54
3972 4097 3.950794 ATGTACTGCGTGTGGGGCG 62.951 63.158 0.00 0.00 0.00 6.13
3973 4098 2.046314 ATGTACTGCGTGTGGGGC 60.046 61.111 0.00 0.00 0.00 5.80
3974 4099 1.003839 ACATGTACTGCGTGTGGGG 60.004 57.895 0.00 0.00 44.95 4.96
3975 4100 1.019278 GGACATGTACTGCGTGTGGG 61.019 60.000 0.00 0.00 46.49 4.61
3976 4101 0.320334 TGGACATGTACTGCGTGTGG 60.320 55.000 10.05 0.00 46.49 4.17
3977 4102 1.394572 CATGGACATGTACTGCGTGTG 59.605 52.381 10.05 0.00 46.49 3.82
3988 4113 1.100510 CCAAGCTGGACATGGACATG 58.899 55.000 10.57 10.57 40.96 3.21
3989 4114 0.994247 TCCAAGCTGGACATGGACAT 59.006 50.000 0.00 0.00 42.67 3.06
3990 4115 2.462301 TCCAAGCTGGACATGGACA 58.538 52.632 0.00 0.00 42.67 4.02
3999 4124 3.565764 TGATCCAACTATCCAAGCTGG 57.434 47.619 0.00 0.00 42.06 4.85
4000 4125 6.270815 CAATTTGATCCAACTATCCAAGCTG 58.729 40.000 0.00 0.00 0.00 4.24
4001 4126 5.163478 GCAATTTGATCCAACTATCCAAGCT 60.163 40.000 0.00 0.00 0.00 3.74
4002 4127 5.045872 GCAATTTGATCCAACTATCCAAGC 58.954 41.667 0.00 0.00 0.00 4.01
4003 4128 6.211587 TGCAATTTGATCCAACTATCCAAG 57.788 37.500 0.00 0.00 0.00 3.61
4004 4129 5.394443 GCTGCAATTTGATCCAACTATCCAA 60.394 40.000 0.00 0.00 0.00 3.53
4005 4130 4.098349 GCTGCAATTTGATCCAACTATCCA 59.902 41.667 0.00 0.00 0.00 3.41
4006 4131 4.340381 AGCTGCAATTTGATCCAACTATCC 59.660 41.667 1.02 0.00 0.00 2.59
4007 4132 5.511234 AGCTGCAATTTGATCCAACTATC 57.489 39.130 1.02 0.00 0.00 2.08
4008 4133 5.927281 AAGCTGCAATTTGATCCAACTAT 57.073 34.783 1.02 0.00 0.00 2.12
4009 4134 5.472148 CAAAGCTGCAATTTGATCCAACTA 58.528 37.500 15.64 0.00 39.50 2.24
4010 4135 4.312443 CAAAGCTGCAATTTGATCCAACT 58.688 39.130 15.64 0.00 39.50 3.16
4011 4136 4.657075 CAAAGCTGCAATTTGATCCAAC 57.343 40.909 15.64 0.00 39.50 3.77
4024 4149 4.779938 GGAACTGTCCTTGCAAAGCTGC 62.780 54.545 0.00 0.00 44.44 5.25
4025 4150 1.000938 GGAACTGTCCTTGCAAAGCTG 60.001 52.381 0.00 0.62 44.44 4.24
4026 4151 1.322442 GGAACTGTCCTTGCAAAGCT 58.678 50.000 0.00 0.00 44.44 3.74
4027 4152 1.032014 TGGAACTGTCCTTGCAAAGC 58.968 50.000 0.00 0.00 44.44 3.51
4055 4180 1.818674 CATCCCCTACAAGTTGCAACC 59.181 52.381 25.62 8.37 0.00 3.77
4057 4182 2.969821 ACATCCCCTACAAGTTGCAA 57.030 45.000 1.81 0.00 0.00 4.08
4093 4218 4.918588 AGACGGAACATTTTACAGGGAAT 58.081 39.130 0.00 0.00 0.00 3.01
4109 4234 7.190335 TGGAGGAAAGAATAATTTAGACGGA 57.810 36.000 0.00 0.00 0.00 4.69
4154 4279 7.232534 AGCACCAACCACATTTATCTTAAAGAA 59.767 33.333 0.00 0.00 0.00 2.52
4156 4281 6.808212 CAGCACCAACCACATTTATCTTAAAG 59.192 38.462 0.00 0.00 0.00 1.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.