Multiple sequence alignment - TraesCS4B01G077400

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G077400 chr4B 100.000 2671 0 0 1 2671 74273346 74276016 0.000000e+00 4933.0
1 TraesCS4B01G077400 chr4B 93.333 420 27 1 1 419 16819773 16819354 1.050000e-173 619.0
2 TraesCS4B01G077400 chr4B 93.079 419 29 0 1 419 466245969 466246387 4.890000e-172 614.0
3 TraesCS4B01G077400 chr4A 87.737 1370 72 30 538 1852 546485891 546484563 0.000000e+00 1511.0
4 TraesCS4B01G077400 chr4A 89.492 295 15 7 2227 2511 546484003 546483715 2.530000e-95 359.0
5 TraesCS4B01G077400 chr4A 91.848 184 14 1 2042 2224 546484352 546484169 3.410000e-64 255.0
6 TraesCS4B01G077400 chr4A 95.402 87 4 0 1896 1982 546484554 546484468 3.590000e-29 139.0
7 TraesCS4B01G077400 chr4D 88.916 1218 70 23 571 1748 50326780 50327972 0.000000e+00 1441.0
8 TraesCS4B01G077400 chr4D 93.987 632 26 5 2044 2671 50354552 50355175 0.000000e+00 946.0
9 TraesCS4B01G077400 chr4D 93.317 419 28 0 1 419 3824947 3824529 1.050000e-173 619.0
10 TraesCS4B01G077400 chr4D 93.317 419 28 0 1 419 418257516 418257098 1.050000e-173 619.0
11 TraesCS4B01G077400 chr4D 97.619 42 1 0 1985 2026 50354461 50354502 3.690000e-09 73.1
12 TraesCS4B01G077400 chr5B 92.807 431 30 1 1 430 373193365 373192935 8.120000e-175 623.0
13 TraesCS4B01G077400 chr6B 93.317 419 28 0 1 419 57358831 57358413 1.050000e-173 619.0
14 TraesCS4B01G077400 chr2B 93.317 419 28 0 1 419 148353614 148353196 1.050000e-173 619.0
15 TraesCS4B01G077400 chr1B 93.317 419 28 0 1 419 430141723 430142141 1.050000e-173 619.0
16 TraesCS4B01G077400 chr1B 93.333 420 27 1 1 419 482448054 482448473 1.050000e-173 619.0
17 TraesCS4B01G077400 chr7D 91.667 48 4 0 423 470 602303975 602303928 1.720000e-07 67.6
18 TraesCS4B01G077400 chr3A 93.478 46 2 1 426 470 623772472 623772517 1.720000e-07 67.6
19 TraesCS4B01G077400 chr7B 100.000 28 0 0 461 488 682710426 682710399 5.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G077400 chr4B 74273346 74276016 2670 False 4933.00 4933 100.00000 1 2671 1 chr4B.!!$F1 2670
1 TraesCS4B01G077400 chr4A 546483715 546485891 2176 True 566.00 1511 91.11975 538 2511 4 chr4A.!!$R1 1973
2 TraesCS4B01G077400 chr4D 50326780 50327972 1192 False 1441.00 1441 88.91600 571 1748 1 chr4D.!!$F1 1177
3 TraesCS4B01G077400 chr4D 50354461 50355175 714 False 509.55 946 95.80300 1985 2671 2 chr4D.!!$F2 686

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
486 487 0.032813 ATACTCCCTCCGTCCGGAAA 60.033 55.0 5.23 0.0 44.66 3.13 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1879 1943 0.178992 TGGCCTTGCTTGTTGCTAGT 60.179 50.0 3.32 0.0 41.73 2.57 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 7.837202 TCTTTATAATCACCCAGTTACGTTG 57.163 36.000 0.00 0.00 0.00 4.10
26 27 7.388437 TCTTTATAATCACCCAGTTACGTTGT 58.612 34.615 0.00 0.00 0.00 3.32
27 28 6.971527 TTATAATCACCCAGTTACGTTGTG 57.028 37.500 0.00 0.00 0.00 3.33
28 29 3.478857 AATCACCCAGTTACGTTGTGA 57.521 42.857 0.00 6.41 39.95 3.58
29 30 2.228138 TCACCCAGTTACGTTGTGAC 57.772 50.000 0.00 0.00 31.45 3.67
41 42 2.822827 CGTTGTGACGTTTGATAGCAC 58.177 47.619 0.00 0.00 44.08 4.40
42 43 2.219903 CGTTGTGACGTTTGATAGCACA 59.780 45.455 0.34 0.34 44.08 4.57
43 44 3.541711 GTTGTGACGTTTGATAGCACAC 58.458 45.455 3.73 0.00 38.98 3.82
44 45 2.827652 TGTGACGTTTGATAGCACACA 58.172 42.857 0.00 0.00 34.85 3.72
45 46 3.198872 TGTGACGTTTGATAGCACACAA 58.801 40.909 0.00 0.00 34.85 3.33
46 47 3.247411 TGTGACGTTTGATAGCACACAAG 59.753 43.478 0.00 0.00 34.85 3.16
47 48 2.805671 TGACGTTTGATAGCACACAAGG 59.194 45.455 0.00 0.00 0.00 3.61
48 49 1.535462 ACGTTTGATAGCACACAAGGC 59.465 47.619 0.00 0.00 0.00 4.35
49 50 1.535028 CGTTTGATAGCACACAAGGCA 59.465 47.619 0.00 0.00 0.00 4.75
50 51 2.162208 CGTTTGATAGCACACAAGGCAT 59.838 45.455 0.00 0.00 0.00 4.40
51 52 3.366273 CGTTTGATAGCACACAAGGCATT 60.366 43.478 0.00 0.00 0.00 3.56
52 53 4.168760 GTTTGATAGCACACAAGGCATTC 58.831 43.478 0.00 0.00 0.00 2.67
53 54 2.368439 TGATAGCACACAAGGCATTCC 58.632 47.619 0.00 0.00 0.00 3.01
55 56 2.113860 TAGCACACAAGGCATTCCTC 57.886 50.000 0.00 0.00 43.40 3.71
56 57 0.610232 AGCACACAAGGCATTCCTCC 60.610 55.000 0.00 0.00 43.40 4.30
57 58 0.895100 GCACACAAGGCATTCCTCCA 60.895 55.000 0.00 0.00 43.40 3.86
58 59 1.171308 CACACAAGGCATTCCTCCAG 58.829 55.000 0.00 0.00 43.40 3.86
59 60 0.773644 ACACAAGGCATTCCTCCAGT 59.226 50.000 0.00 0.00 43.40 4.00
60 61 1.171308 CACAAGGCATTCCTCCAGTG 58.829 55.000 0.00 0.00 43.40 3.66
61 62 0.773644 ACAAGGCATTCCTCCAGTGT 59.226 50.000 0.00 0.00 43.40 3.55
62 63 1.271597 ACAAGGCATTCCTCCAGTGTC 60.272 52.381 0.00 0.00 43.40 3.67
63 64 0.329596 AAGGCATTCCTCCAGTGTCC 59.670 55.000 0.00 0.00 43.40 4.02
64 65 1.450312 GGCATTCCTCCAGTGTCCG 60.450 63.158 0.00 0.00 0.00 4.79
65 66 1.450312 GCATTCCTCCAGTGTCCGG 60.450 63.158 0.00 0.00 0.00 5.14
66 67 1.221840 CATTCCTCCAGTGTCCGGG 59.778 63.158 0.00 0.00 0.00 5.73
67 68 1.080354 ATTCCTCCAGTGTCCGGGA 59.920 57.895 0.00 0.00 33.59 5.14
70 71 3.793060 CTCCAGTGTCCGGGAGTT 58.207 61.111 0.00 0.00 45.07 3.01
71 72 1.293498 CTCCAGTGTCCGGGAGTTG 59.707 63.158 0.00 0.00 45.07 3.16
72 73 2.358737 CCAGTGTCCGGGAGTTGC 60.359 66.667 0.00 0.00 0.00 4.17
73 74 2.425592 CAGTGTCCGGGAGTTGCA 59.574 61.111 0.00 0.00 0.00 4.08
74 75 1.003355 CAGTGTCCGGGAGTTGCAT 60.003 57.895 0.00 0.00 0.00 3.96
75 76 0.249120 CAGTGTCCGGGAGTTGCATA 59.751 55.000 0.00 0.00 0.00 3.14
76 77 0.981183 AGTGTCCGGGAGTTGCATAA 59.019 50.000 0.00 0.00 0.00 1.90
77 78 1.559682 AGTGTCCGGGAGTTGCATAAT 59.440 47.619 0.00 0.00 0.00 1.28
78 79 1.940613 GTGTCCGGGAGTTGCATAATC 59.059 52.381 0.00 0.00 0.00 1.75
79 80 1.837439 TGTCCGGGAGTTGCATAATCT 59.163 47.619 0.00 0.00 0.00 2.40
80 81 2.158957 TGTCCGGGAGTTGCATAATCTC 60.159 50.000 0.00 0.00 0.00 2.75
81 82 2.115427 TCCGGGAGTTGCATAATCTCA 58.885 47.619 0.00 0.00 0.00 3.27
82 83 2.705658 TCCGGGAGTTGCATAATCTCAT 59.294 45.455 0.00 0.00 0.00 2.90
83 84 3.901222 TCCGGGAGTTGCATAATCTCATA 59.099 43.478 0.00 0.00 0.00 2.15
84 85 4.021104 TCCGGGAGTTGCATAATCTCATAG 60.021 45.833 0.00 0.00 0.00 2.23
85 86 4.262635 CCGGGAGTTGCATAATCTCATAGT 60.263 45.833 0.00 0.00 0.00 2.12
86 87 4.926238 CGGGAGTTGCATAATCTCATAGTC 59.074 45.833 0.00 0.00 0.00 2.59
87 88 4.926238 GGGAGTTGCATAATCTCATAGTCG 59.074 45.833 0.00 0.00 0.00 4.18
88 89 4.926238 GGAGTTGCATAATCTCATAGTCGG 59.074 45.833 0.00 0.00 0.00 4.79
89 90 5.279006 GGAGTTGCATAATCTCATAGTCGGA 60.279 44.000 0.00 0.00 0.00 4.55
90 91 5.777802 AGTTGCATAATCTCATAGTCGGAG 58.222 41.667 0.00 0.00 0.00 4.63
91 92 4.790765 TGCATAATCTCATAGTCGGAGG 57.209 45.455 0.00 0.00 33.18 4.30
92 93 4.407365 TGCATAATCTCATAGTCGGAGGA 58.593 43.478 0.00 0.00 33.18 3.71
93 94 4.832823 TGCATAATCTCATAGTCGGAGGAA 59.167 41.667 0.00 0.00 33.18 3.36
94 95 5.481824 TGCATAATCTCATAGTCGGAGGAAT 59.518 40.000 0.00 0.00 33.18 3.01
95 96 6.663523 TGCATAATCTCATAGTCGGAGGAATA 59.336 38.462 0.00 0.00 33.18 1.75
96 97 7.343057 TGCATAATCTCATAGTCGGAGGAATAT 59.657 37.037 0.00 0.00 33.97 1.28
97 98 8.851145 GCATAATCTCATAGTCGGAGGAATATA 58.149 37.037 0.00 0.00 32.06 0.86
108 109 7.313646 AGTCGGAGGAATATATATTTGACACG 58.686 38.462 9.33 10.46 0.00 4.49
109 110 7.176165 AGTCGGAGGAATATATATTTGACACGA 59.824 37.037 9.33 12.20 0.00 4.35
110 111 7.811236 GTCGGAGGAATATATATTTGACACGAA 59.189 37.037 9.33 1.26 0.00 3.85
111 112 8.027189 TCGGAGGAATATATATTTGACACGAAG 58.973 37.037 9.33 0.00 0.00 3.79
112 113 8.027189 CGGAGGAATATATATTTGACACGAAGA 58.973 37.037 9.33 0.00 0.00 2.87
113 114 9.706691 GGAGGAATATATATTTGACACGAAGAA 57.293 33.333 9.33 0.00 0.00 2.52
116 117 9.813080 GGAATATATATTTGACACGAAGAAAGC 57.187 33.333 9.33 0.00 0.00 3.51
119 120 7.849804 ATATATTTGACACGAAGAAAGCAGT 57.150 32.000 0.00 0.00 0.00 4.40
120 121 8.942338 ATATATTTGACACGAAGAAAGCAGTA 57.058 30.769 0.00 0.00 0.00 2.74
121 122 5.597813 ATTTGACACGAAGAAAGCAGTAG 57.402 39.130 0.00 0.00 0.00 2.57
122 123 2.404215 TGACACGAAGAAAGCAGTAGC 58.596 47.619 0.00 0.00 42.56 3.58
123 124 2.223947 TGACACGAAGAAAGCAGTAGCA 60.224 45.455 0.00 0.00 45.49 3.49
124 125 2.800544 GACACGAAGAAAGCAGTAGCAA 59.199 45.455 0.00 0.00 45.49 3.91
125 126 3.403038 ACACGAAGAAAGCAGTAGCAAT 58.597 40.909 0.00 0.00 45.49 3.56
126 127 4.566004 ACACGAAGAAAGCAGTAGCAATA 58.434 39.130 0.00 0.00 45.49 1.90
127 128 4.994852 ACACGAAGAAAGCAGTAGCAATAA 59.005 37.500 0.00 0.00 45.49 1.40
128 129 5.468746 ACACGAAGAAAGCAGTAGCAATAAA 59.531 36.000 0.00 0.00 45.49 1.40
129 130 6.017440 ACACGAAGAAAGCAGTAGCAATAAAA 60.017 34.615 0.00 0.00 45.49 1.52
130 131 6.303259 CACGAAGAAAGCAGTAGCAATAAAAC 59.697 38.462 0.00 0.00 45.49 2.43
131 132 6.204882 ACGAAGAAAGCAGTAGCAATAAAACT 59.795 34.615 0.00 0.00 45.49 2.66
132 133 6.521133 CGAAGAAAGCAGTAGCAATAAAACTG 59.479 38.462 0.00 0.00 45.49 3.16
133 134 7.510549 AAGAAAGCAGTAGCAATAAAACTGA 57.489 32.000 5.91 0.00 45.49 3.41
134 135 7.510549 AGAAAGCAGTAGCAATAAAACTGAA 57.489 32.000 5.91 0.00 45.49 3.02
135 136 7.363431 AGAAAGCAGTAGCAATAAAACTGAAC 58.637 34.615 5.91 0.00 45.49 3.18
136 137 5.283060 AGCAGTAGCAATAAAACTGAACG 57.717 39.130 5.91 0.00 45.49 3.95
137 138 4.994852 AGCAGTAGCAATAAAACTGAACGA 59.005 37.500 5.91 0.00 45.49 3.85
138 139 5.643777 AGCAGTAGCAATAAAACTGAACGAT 59.356 36.000 5.91 0.00 45.49 3.73
139 140 5.960105 GCAGTAGCAATAAAACTGAACGATC 59.040 40.000 5.91 0.00 41.58 3.69
140 141 6.402118 GCAGTAGCAATAAAACTGAACGATCA 60.402 38.462 5.91 0.00 41.58 2.92
141 142 7.677276 GCAGTAGCAATAAAACTGAACGATCAT 60.677 37.037 5.91 0.00 41.58 2.45
142 143 8.177663 CAGTAGCAATAAAACTGAACGATCATT 58.822 33.333 0.00 0.00 34.37 2.57
143 144 9.378551 AGTAGCAATAAAACTGAACGATCATTA 57.621 29.630 0.00 0.00 34.37 1.90
146 147 7.645340 AGCAATAAAACTGAACGATCATTATGC 59.355 33.333 0.00 5.27 34.37 3.14
147 148 7.645340 GCAATAAAACTGAACGATCATTATGCT 59.355 33.333 0.00 0.00 34.37 3.79
151 152 5.914085 ACTGAACGATCATTATGCTAAGC 57.086 39.130 0.00 0.00 34.37 3.09
152 153 5.605534 ACTGAACGATCATTATGCTAAGCT 58.394 37.500 0.00 0.00 34.37 3.74
153 154 6.749139 ACTGAACGATCATTATGCTAAGCTA 58.251 36.000 0.00 0.00 34.37 3.32
154 155 7.210174 ACTGAACGATCATTATGCTAAGCTAA 58.790 34.615 0.00 0.00 34.37 3.09
155 156 7.169982 ACTGAACGATCATTATGCTAAGCTAAC 59.830 37.037 0.00 0.00 34.37 2.34
156 157 6.143919 TGAACGATCATTATGCTAAGCTAACG 59.856 38.462 0.00 0.00 0.00 3.18
157 158 4.923871 ACGATCATTATGCTAAGCTAACGG 59.076 41.667 0.00 0.00 0.00 4.44
158 159 5.161358 CGATCATTATGCTAAGCTAACGGA 58.839 41.667 0.00 0.00 0.00 4.69
159 160 5.807520 CGATCATTATGCTAAGCTAACGGAT 59.192 40.000 0.00 0.00 0.00 4.18
160 161 6.237675 CGATCATTATGCTAAGCTAACGGATG 60.238 42.308 0.00 0.00 0.00 3.51
161 162 5.237815 TCATTATGCTAAGCTAACGGATGG 58.762 41.667 0.00 0.00 0.00 3.51
162 163 2.550830 ATGCTAAGCTAACGGATGGG 57.449 50.000 0.00 0.00 0.00 4.00
163 164 1.200519 TGCTAAGCTAACGGATGGGT 58.799 50.000 0.00 0.00 0.00 4.51
164 165 1.138266 TGCTAAGCTAACGGATGGGTC 59.862 52.381 0.00 0.00 0.00 4.46
165 166 1.413077 GCTAAGCTAACGGATGGGTCT 59.587 52.381 0.00 0.00 0.00 3.85
166 167 2.158943 GCTAAGCTAACGGATGGGTCTT 60.159 50.000 0.00 0.00 0.00 3.01
167 168 2.403252 AAGCTAACGGATGGGTCTTG 57.597 50.000 0.00 0.00 0.00 3.02
168 169 1.276622 AGCTAACGGATGGGTCTTGT 58.723 50.000 0.00 0.00 0.00 3.16
169 170 1.207329 AGCTAACGGATGGGTCTTGTC 59.793 52.381 0.00 0.00 0.00 3.18
170 171 1.742750 GCTAACGGATGGGTCTTGTCC 60.743 57.143 0.00 0.00 0.00 4.02
171 172 1.553248 CTAACGGATGGGTCTTGTCCA 59.447 52.381 0.00 0.00 38.82 4.02
172 173 0.991920 AACGGATGGGTCTTGTCCAT 59.008 50.000 0.00 0.00 46.73 3.41
178 179 3.864789 ATGGGTCTTGTCCATCATACC 57.135 47.619 0.00 0.00 40.74 2.73
179 180 2.556766 TGGGTCTTGTCCATCATACCA 58.443 47.619 0.00 0.00 35.46 3.25
180 181 3.122480 TGGGTCTTGTCCATCATACCAT 58.878 45.455 0.00 0.00 35.46 3.55
181 182 3.527253 TGGGTCTTGTCCATCATACCATT 59.473 43.478 0.00 0.00 35.46 3.16
182 183 4.137543 GGGTCTTGTCCATCATACCATTC 58.862 47.826 0.00 0.00 35.46 2.67
183 184 4.137543 GGTCTTGTCCATCATACCATTCC 58.862 47.826 0.00 0.00 34.53 3.01
184 185 4.385199 GGTCTTGTCCATCATACCATTCCA 60.385 45.833 0.00 0.00 34.53 3.53
185 186 4.576463 GTCTTGTCCATCATACCATTCCAC 59.424 45.833 0.00 0.00 0.00 4.02
186 187 4.474651 TCTTGTCCATCATACCATTCCACT 59.525 41.667 0.00 0.00 0.00 4.00
187 188 5.665360 TCTTGTCCATCATACCATTCCACTA 59.335 40.000 0.00 0.00 0.00 2.74
188 189 5.966853 TGTCCATCATACCATTCCACTAA 57.033 39.130 0.00 0.00 0.00 2.24
189 190 6.514012 TGTCCATCATACCATTCCACTAAT 57.486 37.500 0.00 0.00 0.00 1.73
190 191 6.298361 TGTCCATCATACCATTCCACTAATG 58.702 40.000 0.00 0.00 43.99 1.90
191 192 6.101005 TGTCCATCATACCATTCCACTAATGA 59.899 38.462 0.00 0.00 46.81 2.57
192 193 7.170965 GTCCATCATACCATTCCACTAATGAT 58.829 38.462 0.00 0.00 46.81 2.45
193 194 8.321353 GTCCATCATACCATTCCACTAATGATA 58.679 37.037 0.00 0.00 46.81 2.15
194 195 9.061252 TCCATCATACCATTCCACTAATGATAT 57.939 33.333 0.00 0.00 46.81 1.63
200 201 6.725364 ACCATTCCACTAATGATATGATCCC 58.275 40.000 0.00 0.00 46.81 3.85
201 202 5.819379 CCATTCCACTAATGATATGATCCCG 59.181 44.000 0.00 0.00 46.81 5.14
202 203 6.409704 CATTCCACTAATGATATGATCCCGT 58.590 40.000 0.00 0.00 46.81 5.28
203 204 6.433847 TTCCACTAATGATATGATCCCGTT 57.566 37.500 0.00 0.00 0.00 4.44
204 205 7.547697 TTCCACTAATGATATGATCCCGTTA 57.452 36.000 0.00 0.00 0.00 3.18
205 206 7.733773 TCCACTAATGATATGATCCCGTTAT 57.266 36.000 0.00 0.00 0.00 1.89
206 207 7.782049 TCCACTAATGATATGATCCCGTTATC 58.218 38.462 0.00 0.00 0.00 1.75
207 208 7.398904 TCCACTAATGATATGATCCCGTTATCA 59.601 37.037 0.01 0.01 40.07 2.15
208 209 8.040727 CCACTAATGATATGATCCCGTTATCAA 58.959 37.037 1.54 0.00 39.25 2.57
209 210 9.435688 CACTAATGATATGATCCCGTTATCAAA 57.564 33.333 1.54 2.28 39.25 2.69
213 214 7.905604 TGATATGATCCCGTTATCAAATGAC 57.094 36.000 1.54 0.00 39.25 3.06
214 215 7.449247 TGATATGATCCCGTTATCAAATGACA 58.551 34.615 1.54 0.00 39.25 3.58
215 216 7.936301 TGATATGATCCCGTTATCAAATGACAA 59.064 33.333 1.54 0.00 39.25 3.18
216 217 5.811399 TGATCCCGTTATCAAATGACAAC 57.189 39.130 0.00 0.00 32.97 3.32
217 218 5.496556 TGATCCCGTTATCAAATGACAACT 58.503 37.500 3.38 0.00 32.97 3.16
218 219 5.584649 TGATCCCGTTATCAAATGACAACTC 59.415 40.000 3.38 0.00 32.97 3.01
219 220 4.900684 TCCCGTTATCAAATGACAACTCA 58.099 39.130 3.38 0.00 29.76 3.41
220 221 5.496556 TCCCGTTATCAAATGACAACTCAT 58.503 37.500 3.38 0.00 38.94 2.90
221 222 5.353956 TCCCGTTATCAAATGACAACTCATG 59.646 40.000 3.38 0.00 37.20 3.07
234 235 5.745312 ACAACTCATGTCCATGACTAGAA 57.255 39.130 5.88 0.00 42.42 2.10
235 236 6.114187 ACAACTCATGTCCATGACTAGAAA 57.886 37.500 5.88 0.00 42.42 2.52
236 237 6.533730 ACAACTCATGTCCATGACTAGAAAA 58.466 36.000 5.88 0.00 42.42 2.29
237 238 6.428159 ACAACTCATGTCCATGACTAGAAAAC 59.572 38.462 5.88 0.00 42.42 2.43
238 239 6.365970 ACTCATGTCCATGACTAGAAAACT 57.634 37.500 5.88 0.00 42.42 2.66
239 240 6.773638 ACTCATGTCCATGACTAGAAAACTT 58.226 36.000 5.88 0.00 42.42 2.66
240 241 7.907389 ACTCATGTCCATGACTAGAAAACTTA 58.093 34.615 5.88 0.00 42.42 2.24
241 242 8.375506 ACTCATGTCCATGACTAGAAAACTTAA 58.624 33.333 5.88 0.00 42.42 1.85
242 243 9.388506 CTCATGTCCATGACTAGAAAACTTAAT 57.611 33.333 5.88 0.00 42.42 1.40
243 244 9.383519 TCATGTCCATGACTAGAAAACTTAATC 57.616 33.333 5.88 0.00 42.42 1.75
244 245 9.166173 CATGTCCATGACTAGAAAACTTAATCA 57.834 33.333 0.00 0.00 41.20 2.57
245 246 9.911788 ATGTCCATGACTAGAAAACTTAATCAT 57.088 29.630 0.00 0.00 33.15 2.45
246 247 9.383519 TGTCCATGACTAGAAAACTTAATCATC 57.616 33.333 0.00 0.00 33.15 2.92
247 248 8.543774 GTCCATGACTAGAAAACTTAATCATCG 58.456 37.037 0.00 0.00 0.00 3.84
248 249 8.258007 TCCATGACTAGAAAACTTAATCATCGT 58.742 33.333 0.00 0.00 0.00 3.73
249 250 8.883731 CCATGACTAGAAAACTTAATCATCGTT 58.116 33.333 0.00 0.00 0.00 3.85
250 251 9.694520 CATGACTAGAAAACTTAATCATCGTTG 57.305 33.333 0.00 0.00 0.00 4.10
251 252 9.653287 ATGACTAGAAAACTTAATCATCGTTGA 57.347 29.630 0.00 0.00 36.00 3.18
252 253 9.653287 TGACTAGAAAACTTAATCATCGTTGAT 57.347 29.630 3.07 3.07 44.62 2.57
254 255 9.653287 ACTAGAAAACTTAATCATCGTTGATCA 57.347 29.630 9.34 0.00 41.83 2.92
257 258 8.783093 AGAAAACTTAATCATCGTTGATCAACA 58.217 29.630 32.06 21.47 41.83 3.33
258 259 9.393249 GAAAACTTAATCATCGTTGATCAACAA 57.607 29.630 32.06 19.60 41.83 2.83
259 260 8.955061 AAACTTAATCATCGTTGATCAACAAG 57.045 30.769 32.06 26.29 41.83 3.16
260 261 6.546395 ACTTAATCATCGTTGATCAACAAGC 58.454 36.000 32.06 10.95 41.83 4.01
261 262 6.372659 ACTTAATCATCGTTGATCAACAAGCT 59.627 34.615 32.06 16.40 41.83 3.74
262 263 7.549134 ACTTAATCATCGTTGATCAACAAGCTA 59.451 33.333 32.06 16.74 41.83 3.32
263 264 5.980698 ATCATCGTTGATCAACAAGCTAG 57.019 39.130 32.06 17.97 38.18 3.42
264 265 4.820897 TCATCGTTGATCAACAAGCTAGT 58.179 39.130 32.06 11.12 41.20 2.57
265 266 4.864806 TCATCGTTGATCAACAAGCTAGTC 59.135 41.667 32.06 7.92 41.20 2.59
266 267 4.521130 TCGTTGATCAACAAGCTAGTCT 57.479 40.909 32.06 0.00 41.20 3.24
267 268 5.638596 TCGTTGATCAACAAGCTAGTCTA 57.361 39.130 32.06 6.71 41.20 2.59
268 269 5.641709 TCGTTGATCAACAAGCTAGTCTAG 58.358 41.667 32.06 15.04 41.20 2.43
269 270 5.183331 TCGTTGATCAACAAGCTAGTCTAGT 59.817 40.000 32.06 0.00 41.20 2.57
270 271 6.373495 TCGTTGATCAACAAGCTAGTCTAGTA 59.627 38.462 32.06 1.57 41.20 1.82
271 272 6.689241 CGTTGATCAACAAGCTAGTCTAGTAG 59.311 42.308 32.06 10.96 41.20 2.57
272 273 7.414208 CGTTGATCAACAAGCTAGTCTAGTAGA 60.414 40.741 32.06 0.00 41.20 2.59
273 274 8.410141 GTTGATCAACAAGCTAGTCTAGTAGAT 58.590 37.037 29.43 3.91 40.84 1.98
274 275 7.935520 TGATCAACAAGCTAGTCTAGTAGATG 58.064 38.462 2.51 0.00 0.00 2.90
275 276 6.137794 TCAACAAGCTAGTCTAGTAGATGC 57.862 41.667 2.51 8.59 0.00 3.91
276 277 4.822036 ACAAGCTAGTCTAGTAGATGCG 57.178 45.455 2.51 0.92 0.00 4.73
277 278 4.200874 ACAAGCTAGTCTAGTAGATGCGT 58.799 43.478 2.51 4.57 0.00 5.24
278 279 5.366460 ACAAGCTAGTCTAGTAGATGCGTA 58.634 41.667 2.51 0.00 0.00 4.42
279 280 5.236911 ACAAGCTAGTCTAGTAGATGCGTAC 59.763 44.000 2.51 0.00 0.00 3.67
280 281 5.217978 AGCTAGTCTAGTAGATGCGTACT 57.782 43.478 2.51 0.00 37.09 2.73
281 282 6.343716 AGCTAGTCTAGTAGATGCGTACTA 57.656 41.667 2.51 0.00 34.91 1.82
283 284 5.577945 GCTAGTCTAGTAGATGCGTACTAGG 59.422 48.000 19.75 10.29 46.92 3.02
284 285 4.897140 AGTCTAGTAGATGCGTACTAGGG 58.103 47.826 19.75 5.04 46.92 3.53
285 286 4.592351 AGTCTAGTAGATGCGTACTAGGGA 59.408 45.833 19.75 6.69 46.92 4.20
286 287 4.690280 GTCTAGTAGATGCGTACTAGGGAC 59.310 50.000 19.75 12.41 46.92 4.46
287 288 3.572632 AGTAGATGCGTACTAGGGACA 57.427 47.619 0.00 0.00 31.14 4.02
288 289 4.101645 AGTAGATGCGTACTAGGGACAT 57.898 45.455 0.00 0.00 31.14 3.06
289 290 3.821600 AGTAGATGCGTACTAGGGACATG 59.178 47.826 0.00 0.00 31.14 3.21
290 291 2.667470 AGATGCGTACTAGGGACATGT 58.333 47.619 0.00 0.00 0.00 3.21
291 292 3.828921 AGATGCGTACTAGGGACATGTA 58.171 45.455 0.00 0.00 0.00 2.29
292 293 3.821600 AGATGCGTACTAGGGACATGTAG 59.178 47.826 0.00 0.00 0.00 2.74
293 294 3.008835 TGCGTACTAGGGACATGTAGT 57.991 47.619 0.00 0.58 33.92 2.73
294 295 3.359033 TGCGTACTAGGGACATGTAGTT 58.641 45.455 0.00 0.00 31.79 2.24
295 296 3.765511 TGCGTACTAGGGACATGTAGTTT 59.234 43.478 0.00 0.00 31.79 2.66
296 297 4.221262 TGCGTACTAGGGACATGTAGTTTT 59.779 41.667 0.00 0.00 31.79 2.43
297 298 4.565564 GCGTACTAGGGACATGTAGTTTTG 59.434 45.833 0.00 0.00 31.79 2.44
298 299 5.717119 CGTACTAGGGACATGTAGTTTTGT 58.283 41.667 0.00 0.00 31.79 2.83
299 300 6.161381 CGTACTAGGGACATGTAGTTTTGTT 58.839 40.000 0.00 0.00 31.79 2.83
300 301 6.090358 CGTACTAGGGACATGTAGTTTTGTTG 59.910 42.308 0.00 0.00 31.79 3.33
301 302 6.182507 ACTAGGGACATGTAGTTTTGTTGA 57.817 37.500 0.00 0.00 0.00 3.18
302 303 6.779860 ACTAGGGACATGTAGTTTTGTTGAT 58.220 36.000 0.00 0.00 0.00 2.57
303 304 5.964958 AGGGACATGTAGTTTTGTTGATG 57.035 39.130 0.00 0.00 0.00 3.07
304 305 5.385198 AGGGACATGTAGTTTTGTTGATGT 58.615 37.500 0.00 0.00 0.00 3.06
305 306 6.539173 AGGGACATGTAGTTTTGTTGATGTA 58.461 36.000 0.00 0.00 0.00 2.29
306 307 7.175104 AGGGACATGTAGTTTTGTTGATGTAT 58.825 34.615 0.00 0.00 0.00 2.29
307 308 7.669722 AGGGACATGTAGTTTTGTTGATGTATT 59.330 33.333 0.00 0.00 0.00 1.89
308 309 7.968405 GGGACATGTAGTTTTGTTGATGTATTC 59.032 37.037 0.00 0.00 0.00 1.75
309 310 8.511321 GGACATGTAGTTTTGTTGATGTATTCA 58.489 33.333 0.00 0.00 0.00 2.57
310 311 9.329913 GACATGTAGTTTTGTTGATGTATTCAC 57.670 33.333 0.00 0.00 32.84 3.18
311 312 8.845227 ACATGTAGTTTTGTTGATGTATTCACA 58.155 29.630 0.00 0.00 39.52 3.58
312 313 9.117145 CATGTAGTTTTGTTGATGTATTCACAC 57.883 33.333 0.00 0.00 37.54 3.82
313 314 8.214721 TGTAGTTTTGTTGATGTATTCACACA 57.785 30.769 0.00 0.00 37.54 3.72
314 315 8.845227 TGTAGTTTTGTTGATGTATTCACACAT 58.155 29.630 0.00 0.00 41.83 3.21
315 316 9.117145 GTAGTTTTGTTGATGTATTCACACATG 57.883 33.333 0.00 0.00 39.25 3.21
316 317 7.715657 AGTTTTGTTGATGTATTCACACATGT 58.284 30.769 0.00 0.00 39.25 3.21
317 318 8.845227 AGTTTTGTTGATGTATTCACACATGTA 58.155 29.630 0.00 0.00 39.25 2.29
318 319 9.624697 GTTTTGTTGATGTATTCACACATGTAT 57.375 29.630 0.00 0.00 39.25 2.29
328 329 9.508642 TGTATTCACACATGTATTAAGTTTCCA 57.491 29.630 0.00 0.00 0.00 3.53
329 330 9.988350 GTATTCACACATGTATTAAGTTTCCAG 57.012 33.333 0.00 0.00 0.00 3.86
330 331 8.635765 ATTCACACATGTATTAAGTTTCCAGT 57.364 30.769 0.00 0.00 0.00 4.00
331 332 8.458573 TTCACACATGTATTAAGTTTCCAGTT 57.541 30.769 0.00 0.00 0.00 3.16
332 333 9.562408 TTCACACATGTATTAAGTTTCCAGTTA 57.438 29.630 0.00 0.00 0.00 2.24
333 334 9.562408 TCACACATGTATTAAGTTTCCAGTTAA 57.438 29.630 0.00 0.00 33.23 2.01
411 412 9.665719 ACAACAATTTTATTATTGCCTTTAGGG 57.334 29.630 0.00 0.00 38.74 3.53
449 450 7.867445 AAATTATGGTCAAAGTTAAAGCACG 57.133 32.000 0.00 0.00 0.00 5.34
450 451 3.915437 ATGGTCAAAGTTAAAGCACGG 57.085 42.857 0.00 0.00 0.00 4.94
451 452 2.920524 TGGTCAAAGTTAAAGCACGGA 58.079 42.857 0.00 0.00 0.00 4.69
452 453 3.280295 TGGTCAAAGTTAAAGCACGGAA 58.720 40.909 0.00 0.00 0.00 4.30
453 454 3.695060 TGGTCAAAGTTAAAGCACGGAAA 59.305 39.130 0.00 0.00 0.00 3.13
454 455 4.339814 TGGTCAAAGTTAAAGCACGGAAAT 59.660 37.500 0.00 0.00 0.00 2.17
455 456 5.531659 TGGTCAAAGTTAAAGCACGGAAATA 59.468 36.000 0.00 0.00 0.00 1.40
456 457 6.084277 GGTCAAAGTTAAAGCACGGAAATAG 58.916 40.000 0.00 0.00 0.00 1.73
457 458 6.072893 GGTCAAAGTTAAAGCACGGAAATAGA 60.073 38.462 0.00 0.00 0.00 1.98
458 459 7.015877 GTCAAAGTTAAAGCACGGAAATAGAG 58.984 38.462 0.00 0.00 0.00 2.43
459 460 6.932400 TCAAAGTTAAAGCACGGAAATAGAGA 59.068 34.615 0.00 0.00 0.00 3.10
460 461 7.442969 TCAAAGTTAAAGCACGGAAATAGAGAA 59.557 33.333 0.00 0.00 0.00 2.87
461 462 7.739498 AAGTTAAAGCACGGAAATAGAGAAA 57.261 32.000 0.00 0.00 0.00 2.52
462 463 7.365840 AGTTAAAGCACGGAAATAGAGAAAG 57.634 36.000 0.00 0.00 0.00 2.62
463 464 4.686839 AAAGCACGGAAATAGAGAAAGC 57.313 40.909 0.00 0.00 0.00 3.51
464 465 3.334583 AGCACGGAAATAGAGAAAGCA 57.665 42.857 0.00 0.00 0.00 3.91
465 466 3.878778 AGCACGGAAATAGAGAAAGCAT 58.121 40.909 0.00 0.00 0.00 3.79
466 467 4.265073 AGCACGGAAATAGAGAAAGCATT 58.735 39.130 0.00 0.00 0.00 3.56
467 468 5.428253 AGCACGGAAATAGAGAAAGCATTA 58.572 37.500 0.00 0.00 0.00 1.90
468 469 6.058183 AGCACGGAAATAGAGAAAGCATTAT 58.942 36.000 0.00 0.00 0.00 1.28
469 470 7.217200 AGCACGGAAATAGAGAAAGCATTATA 58.783 34.615 0.00 0.00 0.00 0.98
470 471 7.171678 AGCACGGAAATAGAGAAAGCATTATAC 59.828 37.037 0.00 0.00 0.00 1.47
471 472 7.171678 GCACGGAAATAGAGAAAGCATTATACT 59.828 37.037 0.00 0.00 0.00 2.12
472 473 8.704234 CACGGAAATAGAGAAAGCATTATACTC 58.296 37.037 0.00 0.00 0.00 2.59
473 474 7.873505 ACGGAAATAGAGAAAGCATTATACTCC 59.126 37.037 0.00 0.00 0.00 3.85
474 475 7.332182 CGGAAATAGAGAAAGCATTATACTCCC 59.668 40.741 0.00 0.00 0.00 4.30
475 476 8.379331 GGAAATAGAGAAAGCATTATACTCCCT 58.621 37.037 0.00 0.00 0.00 4.20
476 477 9.430623 GAAATAGAGAAAGCATTATACTCCCTC 57.569 37.037 0.00 0.00 0.00 4.30
477 478 5.816955 AGAGAAAGCATTATACTCCCTCC 57.183 43.478 0.00 0.00 0.00 4.30
478 479 4.282195 AGAGAAAGCATTATACTCCCTCCG 59.718 45.833 0.00 0.00 0.00 4.63
479 480 3.967987 AGAAAGCATTATACTCCCTCCGT 59.032 43.478 0.00 0.00 0.00 4.69
480 481 4.039366 AGAAAGCATTATACTCCCTCCGTC 59.961 45.833 0.00 0.00 0.00 4.79
481 482 2.249139 AGCATTATACTCCCTCCGTCC 58.751 52.381 0.00 0.00 0.00 4.79
482 483 1.067776 GCATTATACTCCCTCCGTCCG 60.068 57.143 0.00 0.00 0.00 4.79
483 484 1.544691 CATTATACTCCCTCCGTCCGG 59.455 57.143 0.00 0.00 0.00 5.14
484 485 0.846015 TTATACTCCCTCCGTCCGGA 59.154 55.000 0.00 0.00 42.90 5.14
485 486 0.846015 TATACTCCCTCCGTCCGGAA 59.154 55.000 5.23 0.00 44.66 4.30
486 487 0.032813 ATACTCCCTCCGTCCGGAAA 60.033 55.000 5.23 0.00 44.66 3.13
487 488 0.032813 TACTCCCTCCGTCCGGAAAT 60.033 55.000 5.23 0.00 44.66 2.17
488 489 1.144057 CTCCCTCCGTCCGGAAATG 59.856 63.158 5.23 0.00 44.66 2.32
489 490 1.611261 TCCCTCCGTCCGGAAATGT 60.611 57.895 5.23 0.00 44.66 2.71
490 491 0.324552 TCCCTCCGTCCGGAAATGTA 60.325 55.000 5.23 0.00 44.66 2.29
491 492 0.538118 CCCTCCGTCCGGAAATGTAA 59.462 55.000 5.23 0.00 44.66 2.41
492 493 1.472728 CCCTCCGTCCGGAAATGTAAG 60.473 57.143 5.23 0.00 44.66 2.34
493 494 1.479323 CCTCCGTCCGGAAATGTAAGA 59.521 52.381 5.23 0.00 44.66 2.10
494 495 2.537401 CTCCGTCCGGAAATGTAAGAC 58.463 52.381 5.23 0.00 44.66 3.01
500 501 5.541098 GTCCGGAAATGTAAGACGATTTT 57.459 39.130 5.23 0.00 0.00 1.82
501 502 5.934921 GTCCGGAAATGTAAGACGATTTTT 58.065 37.500 5.23 0.00 0.00 1.94
502 503 5.793457 GTCCGGAAATGTAAGACGATTTTTG 59.207 40.000 5.23 0.00 0.00 2.44
503 504 5.701750 TCCGGAAATGTAAGACGATTTTTGA 59.298 36.000 0.00 0.00 0.00 2.69
504 505 6.373216 TCCGGAAATGTAAGACGATTTTTGAT 59.627 34.615 0.00 0.00 0.00 2.57
505 506 7.027161 CCGGAAATGTAAGACGATTTTTGATT 58.973 34.615 0.00 0.00 0.00 2.57
506 507 7.540745 CCGGAAATGTAAGACGATTTTTGATTT 59.459 33.333 0.00 0.00 0.00 2.17
507 508 8.911662 CGGAAATGTAAGACGATTTTTGATTTT 58.088 29.630 0.00 0.00 0.00 1.82
531 532 9.613428 TTTTGATACTAGTGTATTCTGGAATGG 57.387 33.333 5.39 0.00 39.29 3.16
532 533 8.547481 TTGATACTAGTGTATTCTGGAATGGA 57.453 34.615 5.39 0.00 39.29 3.41
533 534 8.183104 TGATACTAGTGTATTCTGGAATGGAG 57.817 38.462 5.39 0.26 39.29 3.86
534 535 5.878406 ACTAGTGTATTCTGGAATGGAGG 57.122 43.478 0.00 0.00 32.50 4.30
535 536 4.656112 ACTAGTGTATTCTGGAATGGAGGG 59.344 45.833 0.00 0.00 32.50 4.30
536 537 3.736094 AGTGTATTCTGGAATGGAGGGA 58.264 45.455 6.13 0.00 32.50 4.20
544 545 3.202151 TCTGGAATGGAGGGATTACAACC 59.798 47.826 0.00 0.00 0.00 3.77
548 549 0.988832 TGGAGGGATTACAACCGCTT 59.011 50.000 0.00 0.00 0.00 4.68
559 560 3.454587 AACCGCTTGCGTGTCCTGA 62.455 57.895 13.97 0.00 0.00 3.86
724 732 0.108662 CTCGTGCAGAGCATGTACCA 60.109 55.000 10.62 0.00 44.84 3.25
725 733 0.536724 TCGTGCAGAGCATGTACCAT 59.463 50.000 10.62 0.00 44.84 3.55
726 734 0.933097 CGTGCAGAGCATGTACCATC 59.067 55.000 3.14 0.00 41.10 3.51
727 735 0.933097 GTGCAGAGCATGTACCATCG 59.067 55.000 0.00 0.00 41.91 3.84
730 738 1.068083 AGAGCATGTACCATCGCCG 59.932 57.895 0.00 0.00 0.00 6.46
772 797 1.533756 CCATGCGAAAACGGCCAATAG 60.534 52.381 2.24 0.00 0.00 1.73
776 801 1.467342 GCGAAAACGGCCAATAGTCTT 59.533 47.619 2.24 0.00 0.00 3.01
821 851 2.480610 CCGTTCCAATCCATGCCGG 61.481 63.158 0.00 0.00 0.00 6.13
850 880 2.158449 CACTCTCTCGTGCCAATGTTTC 59.842 50.000 0.00 0.00 0.00 2.78
852 882 0.179215 CTCTCGTGCCAATGTTTCGC 60.179 55.000 0.00 0.00 0.00 4.70
879 917 2.308185 CCCCCTACCAAGTTCCTCC 58.692 63.158 0.00 0.00 0.00 4.30
883 921 1.279271 CCCTACCAAGTTCCTCCAGTG 59.721 57.143 0.00 0.00 0.00 3.66
953 993 4.168922 TCATTTGTCTCATGCAAGCTTG 57.831 40.909 22.44 22.44 0.00 4.01
969 1011 4.104383 AGCTTGATCCCTCAAAGACAAA 57.896 40.909 0.00 0.00 40.78 2.83
980 1022 4.024809 CCTCAAAGACAAAACGAGAAGACC 60.025 45.833 0.00 0.00 0.00 3.85
981 1023 4.509616 TCAAAGACAAAACGAGAAGACCA 58.490 39.130 0.00 0.00 0.00 4.02
982 1024 4.938832 TCAAAGACAAAACGAGAAGACCAA 59.061 37.500 0.00 0.00 0.00 3.67
983 1025 5.413213 TCAAAGACAAAACGAGAAGACCAAA 59.587 36.000 0.00 0.00 0.00 3.28
984 1026 4.877323 AGACAAAACGAGAAGACCAAAC 57.123 40.909 0.00 0.00 0.00 2.93
1027 1069 2.641439 GATGGAGGAGCTCGTGCAGG 62.641 65.000 29.80 0.00 42.74 4.85
1044 1086 1.448540 GGAGTGCGACATGGAGGTG 60.449 63.158 0.00 0.00 0.00 4.00
1093 1135 0.391793 GACCTTCAGGCAGCAGGTAC 60.392 60.000 0.47 0.00 44.36 3.34
1094 1136 1.448540 CCTTCAGGCAGCAGGTACG 60.449 63.158 0.00 0.00 0.00 3.67
1095 1137 2.047274 TTCAGGCAGCAGGTACGC 60.047 61.111 0.00 0.00 0.00 4.42
1096 1138 2.786539 CTTCAGGCAGCAGGTACGCA 62.787 60.000 0.00 0.00 0.00 5.24
1099 1141 4.767255 GGCAGCAGGTACGCAGCT 62.767 66.667 9.34 5.08 43.34 4.24
1115 1157 2.002586 CAGCTAGACCAAACACATCCG 58.997 52.381 0.00 0.00 0.00 4.18
1182 1230 2.214376 AAAAACCCTGCCATGATCGA 57.786 45.000 0.00 0.00 0.00 3.59
1186 1234 1.070445 CCCTGCCATGATCGACTCC 59.930 63.158 0.00 0.00 0.00 3.85
1355 1412 1.128507 GACGACGATGTGTACACCGTA 59.871 52.381 24.06 8.40 35.22 4.02
1356 1413 1.739466 ACGACGATGTGTACACCGTAT 59.261 47.619 24.06 15.49 35.22 3.06
1411 1468 2.125512 CAGGGAAAGCGAGGACGG 60.126 66.667 0.00 0.00 40.15 4.79
1415 1472 2.718073 GGAAAGCGAGGACGGGCTA 61.718 63.158 0.00 0.00 38.88 3.93
1702 1762 0.938713 CGAGACCTCGCTACTGTAGG 59.061 60.000 16.09 4.95 46.50 3.18
1709 1769 1.661112 CTCGCTACTGTAGGCTTTTGC 59.339 52.381 16.09 0.39 46.64 3.68
1713 1773 3.307242 CGCTACTGTAGGCTTTTGCTAAG 59.693 47.826 16.09 0.00 46.54 2.18
1734 1794 0.834612 TGCTATACTGGTTTCCCCGG 59.165 55.000 0.00 0.00 46.09 5.73
1750 1810 0.610785 CCGGGTGGTTGCTGGTAAAT 60.611 55.000 0.00 0.00 0.00 1.40
1812 1876 5.670792 ATCTGGCATGTTCATCATTTGTT 57.329 34.783 0.00 0.00 34.09 2.83
1838 1902 3.733024 TGATATGCGTCAACGGAAAAC 57.267 42.857 0.00 0.00 44.19 2.43
1852 1916 2.420967 CGGAAAACCGACCAGGGATAAT 60.421 50.000 2.30 0.00 46.96 1.28
1854 1918 2.729028 AAACCGACCAGGGATAATGG 57.271 50.000 0.00 0.00 46.96 3.16
1856 1920 1.060163 ACCGACCAGGGATAATGGGG 61.060 60.000 0.00 0.00 46.96 4.96
1857 1921 1.761174 CGACCAGGGATAATGGGGG 59.239 63.158 0.00 0.00 42.48 5.40
1858 1922 1.060163 CGACCAGGGATAATGGGGGT 61.060 60.000 0.00 0.00 42.48 4.95
1860 1924 0.933700 ACCAGGGATAATGGGGGTTG 59.066 55.000 0.00 0.00 42.48 3.77
1861 1925 0.188342 CCAGGGATAATGGGGGTTGG 59.812 60.000 0.00 0.00 33.94 3.77
1862 1926 0.933700 CAGGGATAATGGGGGTTGGT 59.066 55.000 0.00 0.00 0.00 3.67
1863 1927 2.140224 CAGGGATAATGGGGGTTGGTA 58.860 52.381 0.00 0.00 0.00 3.25
1864 1928 2.108250 CAGGGATAATGGGGGTTGGTAG 59.892 54.545 0.00 0.00 0.00 3.18
1865 1929 1.427753 GGGATAATGGGGGTTGGTAGG 59.572 57.143 0.00 0.00 0.00 3.18
1866 1930 1.203013 GGATAATGGGGGTTGGTAGGC 60.203 57.143 0.00 0.00 0.00 3.93
1867 1931 0.857675 ATAATGGGGGTTGGTAGGCC 59.142 55.000 0.00 0.00 0.00 5.19
1868 1932 0.552864 TAATGGGGGTTGGTAGGCCA 60.553 55.000 5.01 0.00 44.38 5.36
1880 1944 4.748277 TGGTAGGCCAAAGTGATACTAC 57.252 45.455 5.01 0.00 42.83 2.73
1881 1945 4.359105 TGGTAGGCCAAAGTGATACTACT 58.641 43.478 5.01 0.00 42.83 2.57
1882 1946 5.521696 TGGTAGGCCAAAGTGATACTACTA 58.478 41.667 5.01 0.00 42.83 1.82
1883 1947 5.597182 TGGTAGGCCAAAGTGATACTACTAG 59.403 44.000 5.01 0.00 42.83 2.57
1884 1948 4.674281 AGGCCAAAGTGATACTACTAGC 57.326 45.455 5.01 0.00 0.00 3.42
1885 1949 4.030913 AGGCCAAAGTGATACTACTAGCA 58.969 43.478 5.01 0.00 0.00 3.49
1886 1950 4.469945 AGGCCAAAGTGATACTACTAGCAA 59.530 41.667 5.01 0.00 0.00 3.91
1887 1951 4.571176 GGCCAAAGTGATACTACTAGCAAC 59.429 45.833 0.00 0.00 0.00 4.17
1888 1952 5.175859 GCCAAAGTGATACTACTAGCAACA 58.824 41.667 0.00 0.00 0.00 3.33
1889 1953 5.642063 GCCAAAGTGATACTACTAGCAACAA 59.358 40.000 0.00 0.00 0.00 2.83
1890 1954 6.183360 GCCAAAGTGATACTACTAGCAACAAG 60.183 42.308 0.00 0.00 0.00 3.16
1891 1955 6.183360 CCAAAGTGATACTACTAGCAACAAGC 60.183 42.308 0.00 0.00 46.19 4.01
1909 1973 5.203528 ACAAGCAAGGCCATAAATATCTGT 58.796 37.500 5.01 0.00 0.00 3.41
1944 2008 1.847968 ACCCCCTCAGGTTCTGGTG 60.848 63.158 0.00 0.00 36.44 4.17
1953 2017 2.002586 CAGGTTCTGGTGCTATTGTCG 58.997 52.381 0.00 0.00 0.00 4.35
1969 2033 1.014564 GTCGCTCTCCCCTTTTCACG 61.015 60.000 0.00 0.00 0.00 4.35
1982 2046 4.142315 CCCTTTTCACGCTCATGATTCATT 60.142 41.667 0.00 0.00 0.00 2.57
1983 2047 5.032863 CCTTTTCACGCTCATGATTCATTC 58.967 41.667 0.00 0.00 0.00 2.67
2048 2168 5.415701 AGTGTGAAATAATCAGCGGTTCAAT 59.584 36.000 0.00 0.00 39.19 2.57
2097 2217 3.243602 ACACAACGAAATGGTAAAAGGGC 60.244 43.478 0.00 0.00 0.00 5.19
2129 2253 5.163754 GGTAGCGCAGATAAAACACTTCAAT 60.164 40.000 11.47 0.00 0.00 2.57
2224 2512 5.826737 AGAATCAACATTCCATCCACATCTC 59.173 40.000 0.00 0.00 39.58 2.75
2233 2521 2.421107 CCATCCACATCTCCCAGACTTG 60.421 54.545 0.00 0.00 0.00 3.16
2266 2554 4.617530 GCTTTTCCAATTTCCGTAAGACCC 60.618 45.833 0.00 0.00 43.02 4.46
2268 2556 1.986631 TCCAATTTCCGTAAGACCCCA 59.013 47.619 0.00 0.00 43.02 4.96
2467 2766 1.986882 AGTCAAAAGAAGCACTGGGG 58.013 50.000 0.00 0.00 0.00 4.96
2511 2810 4.574674 TCCAAGGATAAGCATGTGAGTT 57.425 40.909 0.00 0.00 0.00 3.01
2512 2811 4.517285 TCCAAGGATAAGCATGTGAGTTC 58.483 43.478 0.00 0.00 0.00 3.01
2513 2812 3.629398 CCAAGGATAAGCATGTGAGTTCC 59.371 47.826 0.00 0.00 0.00 3.62
2514 2813 3.185246 AGGATAAGCATGTGAGTTCCG 57.815 47.619 0.00 0.00 0.00 4.30
2515 2814 2.501723 AGGATAAGCATGTGAGTTCCGT 59.498 45.455 0.00 0.00 0.00 4.69
2532 2831 2.301870 TCCGTTCAAGACATACCAAGCT 59.698 45.455 0.00 0.00 0.00 3.74
2548 2847 0.738975 AGCTAGCACGCAACGAGATA 59.261 50.000 18.83 0.00 0.00 1.98
2595 2894 1.610522 GCACATCACTTGGCTTGTCTT 59.389 47.619 0.00 0.00 0.00 3.01
2596 2895 2.606308 GCACATCACTTGGCTTGTCTTG 60.606 50.000 0.00 0.00 0.00 3.02
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 8.044908 ACAACGTAACTGGGTGATTATAAAGAT 58.955 33.333 0.00 0.00 0.00 2.40
1 2 7.332430 CACAACGTAACTGGGTGATTATAAAGA 59.668 37.037 0.00 0.00 0.00 2.52
2 3 7.332430 TCACAACGTAACTGGGTGATTATAAAG 59.668 37.037 0.00 0.00 33.88 1.85
3 4 7.118101 GTCACAACGTAACTGGGTGATTATAAA 59.882 37.037 0.00 0.00 40.23 1.40
4 5 6.591062 GTCACAACGTAACTGGGTGATTATAA 59.409 38.462 0.00 0.00 40.23 0.98
5 6 6.101332 GTCACAACGTAACTGGGTGATTATA 58.899 40.000 0.00 0.00 40.23 0.98
6 7 4.933400 GTCACAACGTAACTGGGTGATTAT 59.067 41.667 0.00 0.00 40.23 1.28
7 8 4.309099 GTCACAACGTAACTGGGTGATTA 58.691 43.478 0.00 0.00 40.23 1.75
8 9 3.135994 GTCACAACGTAACTGGGTGATT 58.864 45.455 0.00 0.00 40.23 2.57
9 10 2.762745 GTCACAACGTAACTGGGTGAT 58.237 47.619 0.00 0.00 40.23 3.06
10 11 1.536496 CGTCACAACGTAACTGGGTGA 60.536 52.381 0.00 0.00 43.94 4.02
11 12 0.856641 CGTCACAACGTAACTGGGTG 59.143 55.000 0.00 0.00 43.94 4.61
12 13 3.277652 CGTCACAACGTAACTGGGT 57.722 52.632 0.00 0.00 43.94 4.51
22 23 3.001838 TGTGTGCTATCAAACGTCACAAC 59.998 43.478 5.66 2.58 39.07 3.32
23 24 3.198872 TGTGTGCTATCAAACGTCACAA 58.801 40.909 5.66 0.00 39.07 3.33
24 25 2.827652 TGTGTGCTATCAAACGTCACA 58.172 42.857 0.34 0.34 33.01 3.58
25 26 3.363970 CCTTGTGTGCTATCAAACGTCAC 60.364 47.826 0.00 0.00 33.01 3.67
26 27 2.805671 CCTTGTGTGCTATCAAACGTCA 59.194 45.455 0.00 0.00 33.01 4.35
27 28 2.412847 GCCTTGTGTGCTATCAAACGTC 60.413 50.000 0.00 0.00 33.01 4.34
28 29 1.535462 GCCTTGTGTGCTATCAAACGT 59.465 47.619 0.00 0.00 33.01 3.99
29 30 1.535028 TGCCTTGTGTGCTATCAAACG 59.465 47.619 0.00 0.00 33.01 3.60
30 31 3.855689 ATGCCTTGTGTGCTATCAAAC 57.144 42.857 0.00 0.00 0.00 2.93
31 32 3.193267 GGAATGCCTTGTGTGCTATCAAA 59.807 43.478 0.00 0.00 0.00 2.69
32 33 2.754552 GGAATGCCTTGTGTGCTATCAA 59.245 45.455 0.00 0.00 0.00 2.57
33 34 2.025981 AGGAATGCCTTGTGTGCTATCA 60.026 45.455 0.00 0.00 43.90 2.15
34 35 2.648059 AGGAATGCCTTGTGTGCTATC 58.352 47.619 0.00 0.00 43.90 2.08
35 36 2.814805 AGGAATGCCTTGTGTGCTAT 57.185 45.000 0.00 0.00 43.90 2.97
46 47 1.450312 CGGACACTGGAGGAATGCC 60.450 63.158 0.00 0.00 0.00 4.40
47 48 1.450312 CCGGACACTGGAGGAATGC 60.450 63.158 0.00 0.00 0.00 3.56
48 49 1.221840 CCCGGACACTGGAGGAATG 59.778 63.158 0.73 0.00 0.00 2.67
49 50 0.978146 CTCCCGGACACTGGAGGAAT 60.978 60.000 0.73 0.00 42.52 3.01
50 51 1.609501 CTCCCGGACACTGGAGGAA 60.610 63.158 0.73 0.00 42.52 3.36
51 52 2.037367 CTCCCGGACACTGGAGGA 59.963 66.667 0.73 0.00 42.52 3.71
54 55 2.879233 GCAACTCCCGGACACTGGA 61.879 63.158 0.73 0.00 0.00 3.86
55 56 2.358737 GCAACTCCCGGACACTGG 60.359 66.667 0.73 0.00 0.00 4.00
56 57 0.249120 TATGCAACTCCCGGACACTG 59.751 55.000 0.73 0.00 0.00 3.66
57 58 0.981183 TTATGCAACTCCCGGACACT 59.019 50.000 0.73 0.00 0.00 3.55
58 59 1.940613 GATTATGCAACTCCCGGACAC 59.059 52.381 0.73 0.00 0.00 3.67
59 60 1.837439 AGATTATGCAACTCCCGGACA 59.163 47.619 0.73 0.00 0.00 4.02
60 61 2.158957 TGAGATTATGCAACTCCCGGAC 60.159 50.000 0.73 0.00 0.00 4.79
61 62 2.115427 TGAGATTATGCAACTCCCGGA 58.885 47.619 0.73 0.00 0.00 5.14
62 63 2.620251 TGAGATTATGCAACTCCCGG 57.380 50.000 0.00 0.00 0.00 5.73
63 64 4.887748 ACTATGAGATTATGCAACTCCCG 58.112 43.478 0.00 0.00 0.00 5.14
64 65 4.926238 CGACTATGAGATTATGCAACTCCC 59.074 45.833 0.00 0.00 0.00 4.30
65 66 4.926238 CCGACTATGAGATTATGCAACTCC 59.074 45.833 0.00 0.00 0.00 3.85
66 67 5.773575 TCCGACTATGAGATTATGCAACTC 58.226 41.667 0.00 0.00 0.00 3.01
67 68 5.279206 CCTCCGACTATGAGATTATGCAACT 60.279 44.000 0.00 0.00 31.26 3.16
68 69 4.926238 CCTCCGACTATGAGATTATGCAAC 59.074 45.833 0.00 0.00 31.26 4.17
69 70 4.832823 TCCTCCGACTATGAGATTATGCAA 59.167 41.667 0.00 0.00 31.26 4.08
70 71 4.407365 TCCTCCGACTATGAGATTATGCA 58.593 43.478 0.00 0.00 31.26 3.96
71 72 5.392767 TTCCTCCGACTATGAGATTATGC 57.607 43.478 0.00 0.00 31.26 3.14
82 83 8.456471 CGTGTCAAATATATATTCCTCCGACTA 58.544 37.037 8.42 1.54 0.00 2.59
83 84 7.176165 TCGTGTCAAATATATATTCCTCCGACT 59.824 37.037 8.42 0.00 0.00 4.18
84 85 7.310664 TCGTGTCAAATATATATTCCTCCGAC 58.689 38.462 8.42 10.27 0.00 4.79
85 86 7.457024 TCGTGTCAAATATATATTCCTCCGA 57.543 36.000 8.42 9.74 0.00 4.55
86 87 8.027189 TCTTCGTGTCAAATATATATTCCTCCG 58.973 37.037 8.42 7.90 0.00 4.63
87 88 9.706691 TTCTTCGTGTCAAATATATATTCCTCC 57.293 33.333 8.42 0.00 0.00 4.30
90 91 9.813080 GCTTTCTTCGTGTCAAATATATATTCC 57.187 33.333 8.42 1.57 0.00 3.01
93 94 9.547753 ACTGCTTTCTTCGTGTCAAATATATAT 57.452 29.630 0.00 0.00 0.00 0.86
94 95 8.942338 ACTGCTTTCTTCGTGTCAAATATATA 57.058 30.769 0.00 0.00 0.00 0.86
95 96 7.849804 ACTGCTTTCTTCGTGTCAAATATAT 57.150 32.000 0.00 0.00 0.00 0.86
96 97 7.010183 GCTACTGCTTTCTTCGTGTCAAATATA 59.990 37.037 0.00 0.00 36.03 0.86
97 98 6.183360 GCTACTGCTTTCTTCGTGTCAAATAT 60.183 38.462 0.00 0.00 36.03 1.28
98 99 5.120208 GCTACTGCTTTCTTCGTGTCAAATA 59.880 40.000 0.00 0.00 36.03 1.40
99 100 4.083802 GCTACTGCTTTCTTCGTGTCAAAT 60.084 41.667 0.00 0.00 36.03 2.32
100 101 3.247648 GCTACTGCTTTCTTCGTGTCAAA 59.752 43.478 0.00 0.00 36.03 2.69
101 102 2.800544 GCTACTGCTTTCTTCGTGTCAA 59.199 45.455 0.00 0.00 36.03 3.18
102 103 2.223947 TGCTACTGCTTTCTTCGTGTCA 60.224 45.455 0.00 0.00 40.48 3.58
103 104 2.404215 TGCTACTGCTTTCTTCGTGTC 58.596 47.619 0.00 0.00 40.48 3.67
104 105 2.526304 TGCTACTGCTTTCTTCGTGT 57.474 45.000 0.00 0.00 40.48 4.49
105 106 5.530519 TTATTGCTACTGCTTTCTTCGTG 57.469 39.130 0.00 0.00 40.48 4.35
106 107 6.204882 AGTTTTATTGCTACTGCTTTCTTCGT 59.795 34.615 0.00 0.00 40.48 3.85
107 108 6.521133 CAGTTTTATTGCTACTGCTTTCTTCG 59.479 38.462 0.00 0.00 40.48 3.79
108 109 7.584987 TCAGTTTTATTGCTACTGCTTTCTTC 58.415 34.615 0.00 0.00 39.24 2.87
109 110 7.510549 TCAGTTTTATTGCTACTGCTTTCTT 57.489 32.000 0.00 0.00 39.24 2.52
110 111 7.363431 GTTCAGTTTTATTGCTACTGCTTTCT 58.637 34.615 0.00 0.00 39.24 2.52
111 112 6.303259 CGTTCAGTTTTATTGCTACTGCTTTC 59.697 38.462 0.00 0.00 39.24 2.62
112 113 6.017440 TCGTTCAGTTTTATTGCTACTGCTTT 60.017 34.615 0.00 0.00 39.24 3.51
113 114 5.468746 TCGTTCAGTTTTATTGCTACTGCTT 59.531 36.000 0.00 0.00 39.24 3.91
114 115 4.994852 TCGTTCAGTTTTATTGCTACTGCT 59.005 37.500 0.00 0.00 39.24 4.24
115 116 5.277601 TCGTTCAGTTTTATTGCTACTGC 57.722 39.130 0.00 0.00 39.24 4.40
116 117 7.060600 TGATCGTTCAGTTTTATTGCTACTG 57.939 36.000 0.00 0.00 40.42 2.74
117 118 7.849804 ATGATCGTTCAGTTTTATTGCTACT 57.150 32.000 2.21 0.00 34.73 2.57
120 121 7.645340 GCATAATGATCGTTCAGTTTTATTGCT 59.355 33.333 2.72 0.00 34.73 3.91
121 122 7.645340 AGCATAATGATCGTTCAGTTTTATTGC 59.355 33.333 2.72 7.70 34.73 3.56
125 126 8.335356 GCTTAGCATAATGATCGTTCAGTTTTA 58.665 33.333 2.72 0.00 34.73 1.52
126 127 7.066284 AGCTTAGCATAATGATCGTTCAGTTTT 59.934 33.333 7.07 0.00 34.73 2.43
127 128 6.540189 AGCTTAGCATAATGATCGTTCAGTTT 59.460 34.615 7.07 0.00 34.73 2.66
128 129 6.051717 AGCTTAGCATAATGATCGTTCAGTT 58.948 36.000 7.07 0.00 34.73 3.16
129 130 5.605534 AGCTTAGCATAATGATCGTTCAGT 58.394 37.500 7.07 1.96 34.73 3.41
130 131 7.505646 GTTAGCTTAGCATAATGATCGTTCAG 58.494 38.462 7.07 0.00 34.73 3.02
131 132 6.143919 CGTTAGCTTAGCATAATGATCGTTCA 59.856 38.462 7.07 0.00 36.00 3.18
132 133 6.400091 CCGTTAGCTTAGCATAATGATCGTTC 60.400 42.308 7.07 0.00 0.00 3.95
133 134 5.405571 CCGTTAGCTTAGCATAATGATCGTT 59.594 40.000 7.07 5.33 0.00 3.85
134 135 4.923871 CCGTTAGCTTAGCATAATGATCGT 59.076 41.667 7.07 0.00 0.00 3.73
135 136 5.161358 TCCGTTAGCTTAGCATAATGATCG 58.839 41.667 7.07 2.92 0.00 3.69
136 137 6.036517 CCATCCGTTAGCTTAGCATAATGATC 59.963 42.308 7.07 0.00 0.00 2.92
137 138 5.877012 CCATCCGTTAGCTTAGCATAATGAT 59.123 40.000 7.07 0.00 0.00 2.45
138 139 5.237815 CCATCCGTTAGCTTAGCATAATGA 58.762 41.667 7.07 0.00 0.00 2.57
139 140 4.393062 CCCATCCGTTAGCTTAGCATAATG 59.607 45.833 7.07 7.64 0.00 1.90
140 141 4.041691 ACCCATCCGTTAGCTTAGCATAAT 59.958 41.667 7.07 0.00 0.00 1.28
141 142 3.389983 ACCCATCCGTTAGCTTAGCATAA 59.610 43.478 7.07 0.00 0.00 1.90
142 143 2.969950 ACCCATCCGTTAGCTTAGCATA 59.030 45.455 7.07 0.00 0.00 3.14
143 144 1.768870 ACCCATCCGTTAGCTTAGCAT 59.231 47.619 7.07 0.00 0.00 3.79
144 145 1.138266 GACCCATCCGTTAGCTTAGCA 59.862 52.381 7.07 0.00 0.00 3.49
145 146 1.413077 AGACCCATCCGTTAGCTTAGC 59.587 52.381 0.00 0.00 0.00 3.09
146 147 3.118738 ACAAGACCCATCCGTTAGCTTAG 60.119 47.826 0.00 0.00 0.00 2.18
147 148 2.835764 ACAAGACCCATCCGTTAGCTTA 59.164 45.455 0.00 0.00 0.00 3.09
148 149 1.628846 ACAAGACCCATCCGTTAGCTT 59.371 47.619 0.00 0.00 0.00 3.74
149 150 1.207329 GACAAGACCCATCCGTTAGCT 59.793 52.381 0.00 0.00 0.00 3.32
150 151 1.653151 GACAAGACCCATCCGTTAGC 58.347 55.000 0.00 0.00 0.00 3.09
151 152 1.553248 TGGACAAGACCCATCCGTTAG 59.447 52.381 0.00 0.00 35.06 2.34
152 153 1.646912 TGGACAAGACCCATCCGTTA 58.353 50.000 0.00 0.00 35.06 3.18
153 154 0.991920 ATGGACAAGACCCATCCGTT 59.008 50.000 0.00 0.00 40.16 4.44
154 155 2.696864 ATGGACAAGACCCATCCGT 58.303 52.632 0.00 0.00 40.16 4.69
158 159 3.122480 TGGTATGATGGACAAGACCCAT 58.878 45.455 0.00 0.00 46.40 4.00
159 160 2.556766 TGGTATGATGGACAAGACCCA 58.443 47.619 0.00 0.00 37.61 4.51
160 161 3.864789 ATGGTATGATGGACAAGACCC 57.135 47.619 0.00 0.00 37.61 4.46
161 162 4.137543 GGAATGGTATGATGGACAAGACC 58.862 47.826 0.00 0.00 38.36 3.85
162 163 4.576463 GTGGAATGGTATGATGGACAAGAC 59.424 45.833 0.00 0.00 0.00 3.01
163 164 4.474651 AGTGGAATGGTATGATGGACAAGA 59.525 41.667 0.00 0.00 0.00 3.02
164 165 4.785301 AGTGGAATGGTATGATGGACAAG 58.215 43.478 0.00 0.00 0.00 3.16
165 166 4.860802 AGTGGAATGGTATGATGGACAA 57.139 40.909 0.00 0.00 0.00 3.18
166 167 5.966853 TTAGTGGAATGGTATGATGGACA 57.033 39.130 0.00 0.00 0.00 4.02
167 168 6.533730 TCATTAGTGGAATGGTATGATGGAC 58.466 40.000 0.00 0.00 44.50 4.02
168 169 6.762077 TCATTAGTGGAATGGTATGATGGA 57.238 37.500 0.00 0.00 44.50 3.41
175 176 7.364673 CGGGATCATATCATTAGTGGAATGGTA 60.365 40.741 0.00 0.00 43.70 3.25
176 177 6.577039 CGGGATCATATCATTAGTGGAATGGT 60.577 42.308 0.00 0.00 44.50 3.55
177 178 5.819379 CGGGATCATATCATTAGTGGAATGG 59.181 44.000 0.00 0.00 44.50 3.16
178 179 6.409704 ACGGGATCATATCATTAGTGGAATG 58.590 40.000 0.00 0.00 45.57 2.67
179 180 6.627087 ACGGGATCATATCATTAGTGGAAT 57.373 37.500 0.00 0.00 0.00 3.01
180 181 6.433847 AACGGGATCATATCATTAGTGGAA 57.566 37.500 0.00 0.00 0.00 3.53
181 182 7.398904 TGATAACGGGATCATATCATTAGTGGA 59.601 37.037 0.00 0.00 32.59 4.02
182 183 7.555965 TGATAACGGGATCATATCATTAGTGG 58.444 38.462 0.00 0.00 32.59 4.00
183 184 9.435688 TTTGATAACGGGATCATATCATTAGTG 57.564 33.333 2.74 0.00 36.31 2.74
187 188 8.950210 GTCATTTGATAACGGGATCATATCATT 58.050 33.333 2.74 0.00 36.31 2.57
188 189 8.102676 TGTCATTTGATAACGGGATCATATCAT 58.897 33.333 2.74 0.00 36.31 2.45
189 190 7.449247 TGTCATTTGATAACGGGATCATATCA 58.551 34.615 2.74 0.75 35.77 2.15
190 191 7.905604 TGTCATTTGATAACGGGATCATATC 57.094 36.000 2.74 0.00 35.77 1.63
191 192 7.939039 AGTTGTCATTTGATAACGGGATCATAT 59.061 33.333 12.58 1.71 46.44 1.78
192 193 7.279615 AGTTGTCATTTGATAACGGGATCATA 58.720 34.615 12.58 0.00 46.44 2.15
193 194 6.122277 AGTTGTCATTTGATAACGGGATCAT 58.878 36.000 12.58 0.00 46.44 2.45
194 195 5.496556 AGTTGTCATTTGATAACGGGATCA 58.503 37.500 12.58 0.00 46.44 2.92
195 196 5.584649 TGAGTTGTCATTTGATAACGGGATC 59.415 40.000 12.58 7.15 46.44 3.36
196 197 5.496556 TGAGTTGTCATTTGATAACGGGAT 58.503 37.500 12.58 0.00 46.44 3.85
197 198 4.900684 TGAGTTGTCATTTGATAACGGGA 58.099 39.130 12.58 1.45 46.44 5.14
198 199 5.123820 ACATGAGTTGTCATTTGATAACGGG 59.876 40.000 12.58 7.68 46.44 5.28
199 200 6.182039 ACATGAGTTGTCATTTGATAACGG 57.818 37.500 12.58 7.94 46.44 4.44
212 213 5.745312 TTCTAGTCATGGACATGAGTTGT 57.255 39.130 23.23 9.00 46.30 3.32
213 214 6.652481 AGTTTTCTAGTCATGGACATGAGTTG 59.348 38.462 23.23 20.94 46.30 3.16
214 215 6.773638 AGTTTTCTAGTCATGGACATGAGTT 58.226 36.000 23.23 13.77 46.30 3.01
217 218 9.383519 GATTAAGTTTTCTAGTCATGGACATGA 57.616 33.333 10.75 10.75 44.83 3.07
218 219 9.166173 TGATTAAGTTTTCTAGTCATGGACATG 57.834 33.333 5.95 5.95 40.09 3.21
219 220 9.911788 ATGATTAAGTTTTCTAGTCATGGACAT 57.088 29.630 0.00 0.00 34.60 3.06
220 221 9.383519 GATGATTAAGTTTTCTAGTCATGGACA 57.616 33.333 0.00 0.00 34.60 4.02
221 222 8.543774 CGATGATTAAGTTTTCTAGTCATGGAC 58.456 37.037 0.00 0.00 30.88 4.02
222 223 8.258007 ACGATGATTAAGTTTTCTAGTCATGGA 58.742 33.333 0.00 0.00 31.89 3.41
223 224 8.425577 ACGATGATTAAGTTTTCTAGTCATGG 57.574 34.615 0.00 0.00 32.73 3.66
224 225 9.694520 CAACGATGATTAAGTTTTCTAGTCATG 57.305 33.333 0.00 0.00 30.88 3.07
225 226 9.653287 TCAACGATGATTAAGTTTTCTAGTCAT 57.347 29.630 0.00 0.00 32.27 3.06
226 227 9.653287 ATCAACGATGATTAAGTTTTCTAGTCA 57.347 29.630 1.78 0.00 43.89 3.41
228 229 9.653287 TGATCAACGATGATTAAGTTTTCTAGT 57.347 29.630 9.74 0.00 46.30 2.57
231 232 8.783093 TGTTGATCAACGATGATTAAGTTTTCT 58.217 29.630 28.55 0.00 46.30 2.52
232 233 8.948853 TGTTGATCAACGATGATTAAGTTTTC 57.051 30.769 28.55 4.30 46.30 2.29
233 234 9.398170 CTTGTTGATCAACGATGATTAAGTTTT 57.602 29.630 28.55 0.00 46.30 2.43
234 235 7.538678 GCTTGTTGATCAACGATGATTAAGTTT 59.461 33.333 28.55 0.00 46.30 2.66
235 236 7.023575 GCTTGTTGATCAACGATGATTAAGTT 58.976 34.615 28.55 0.00 46.30 2.66
236 237 6.372659 AGCTTGTTGATCAACGATGATTAAGT 59.627 34.615 28.55 14.25 46.30 2.24
237 238 6.779117 AGCTTGTTGATCAACGATGATTAAG 58.221 36.000 28.55 23.87 46.30 1.85
238 239 6.741992 AGCTTGTTGATCAACGATGATTAA 57.258 33.333 28.55 16.62 46.30 1.40
239 240 7.041721 ACTAGCTTGTTGATCAACGATGATTA 58.958 34.615 28.55 16.47 46.30 1.75
240 241 5.877012 ACTAGCTTGTTGATCAACGATGATT 59.123 36.000 28.55 16.27 46.30 2.57
242 243 4.820897 ACTAGCTTGTTGATCAACGATGA 58.179 39.130 28.55 15.87 43.94 2.92
243 244 4.867047 AGACTAGCTTGTTGATCAACGATG 59.133 41.667 28.55 21.75 43.94 3.84
244 245 5.078411 AGACTAGCTTGTTGATCAACGAT 57.922 39.130 28.55 18.61 43.94 3.73
245 246 4.521130 AGACTAGCTTGTTGATCAACGA 57.479 40.909 28.55 26.29 43.94 3.85
246 247 5.403246 ACTAGACTAGCTTGTTGATCAACG 58.597 41.667 28.55 18.59 43.94 4.10
247 248 7.763356 TCTACTAGACTAGCTTGTTGATCAAC 58.237 38.462 28.10 28.10 41.50 3.18
248 249 7.939784 TCTACTAGACTAGCTTGTTGATCAA 57.060 36.000 9.52 3.38 34.43 2.57
249 250 7.469318 GCATCTACTAGACTAGCTTGTTGATCA 60.469 40.741 9.52 0.00 40.51 2.92
250 251 6.861055 GCATCTACTAGACTAGCTTGTTGATC 59.139 42.308 9.52 10.79 40.51 2.92
251 252 6.514212 CGCATCTACTAGACTAGCTTGTTGAT 60.514 42.308 9.52 14.09 42.05 2.57
252 253 5.220873 CGCATCTACTAGACTAGCTTGTTGA 60.221 44.000 9.52 11.89 38.10 3.18
253 254 4.973051 CGCATCTACTAGACTAGCTTGTTG 59.027 45.833 9.52 6.56 34.43 3.33
254 255 4.641094 ACGCATCTACTAGACTAGCTTGTT 59.359 41.667 9.52 0.00 34.43 2.83
255 256 4.200874 ACGCATCTACTAGACTAGCTTGT 58.799 43.478 9.52 0.00 36.54 3.16
256 257 4.822036 ACGCATCTACTAGACTAGCTTG 57.178 45.455 9.52 0.00 0.00 4.01
257 258 5.613329 AGTACGCATCTACTAGACTAGCTT 58.387 41.667 9.52 0.00 0.00 3.74
258 259 5.217978 AGTACGCATCTACTAGACTAGCT 57.782 43.478 9.52 0.00 0.00 3.32
259 260 5.577945 CCTAGTACGCATCTACTAGACTAGC 59.422 48.000 15.81 0.00 44.99 3.42
260 261 6.071447 TCCCTAGTACGCATCTACTAGACTAG 60.071 46.154 15.81 8.00 44.99 2.57
261 262 5.777223 TCCCTAGTACGCATCTACTAGACTA 59.223 44.000 15.81 2.85 44.99 2.59
262 263 4.592351 TCCCTAGTACGCATCTACTAGACT 59.408 45.833 15.81 0.00 44.99 3.24
263 264 4.690280 GTCCCTAGTACGCATCTACTAGAC 59.310 50.000 15.81 6.92 44.99 2.59
264 265 4.346127 TGTCCCTAGTACGCATCTACTAGA 59.654 45.833 15.81 0.00 44.99 2.43
265 266 4.639334 TGTCCCTAGTACGCATCTACTAG 58.361 47.826 9.80 9.80 43.10 2.57
266 267 4.694760 TGTCCCTAGTACGCATCTACTA 57.305 45.455 0.00 0.00 0.00 1.82
267 268 3.572632 TGTCCCTAGTACGCATCTACT 57.427 47.619 0.00 0.00 0.00 2.57
268 269 3.568853 ACATGTCCCTAGTACGCATCTAC 59.431 47.826 0.00 0.00 0.00 2.59
269 270 3.828921 ACATGTCCCTAGTACGCATCTA 58.171 45.455 0.00 0.00 0.00 1.98
270 271 2.667470 ACATGTCCCTAGTACGCATCT 58.333 47.619 0.00 0.00 0.00 2.90
271 272 3.568853 ACTACATGTCCCTAGTACGCATC 59.431 47.826 0.00 0.00 0.00 3.91
272 273 3.563223 ACTACATGTCCCTAGTACGCAT 58.437 45.455 0.00 0.00 0.00 4.73
273 274 3.008835 ACTACATGTCCCTAGTACGCA 57.991 47.619 0.00 0.00 0.00 5.24
274 275 4.382345 AAACTACATGTCCCTAGTACGC 57.618 45.455 0.00 0.00 0.00 4.42
275 276 5.717119 ACAAAACTACATGTCCCTAGTACG 58.283 41.667 0.00 0.00 0.00 3.67
276 277 7.156673 TCAACAAAACTACATGTCCCTAGTAC 58.843 38.462 0.00 0.00 0.00 2.73
277 278 7.305813 TCAACAAAACTACATGTCCCTAGTA 57.694 36.000 0.00 0.00 0.00 1.82
278 279 6.182507 TCAACAAAACTACATGTCCCTAGT 57.817 37.500 0.00 0.00 0.00 2.57
279 280 6.655003 ACATCAACAAAACTACATGTCCCTAG 59.345 38.462 0.00 0.00 0.00 3.02
280 281 6.539173 ACATCAACAAAACTACATGTCCCTA 58.461 36.000 0.00 0.00 0.00 3.53
281 282 5.385198 ACATCAACAAAACTACATGTCCCT 58.615 37.500 0.00 0.00 0.00 4.20
282 283 5.705609 ACATCAACAAAACTACATGTCCC 57.294 39.130 0.00 0.00 0.00 4.46
283 284 8.511321 TGAATACATCAACAAAACTACATGTCC 58.489 33.333 0.00 0.00 34.30 4.02
284 285 9.329913 GTGAATACATCAACAAAACTACATGTC 57.670 33.333 0.00 0.00 40.50 3.06
285 286 8.845227 TGTGAATACATCAACAAAACTACATGT 58.155 29.630 2.69 2.69 40.50 3.21
286 287 9.117145 GTGTGAATACATCAACAAAACTACATG 57.883 33.333 0.00 0.00 40.50 3.21
287 288 8.845227 TGTGTGAATACATCAACAAAACTACAT 58.155 29.630 0.00 0.00 40.50 2.29
288 289 8.214721 TGTGTGAATACATCAACAAAACTACA 57.785 30.769 0.00 0.00 40.50 2.74
289 290 9.117145 CATGTGTGAATACATCAACAAAACTAC 57.883 33.333 0.00 0.00 40.50 2.73
290 291 8.845227 ACATGTGTGAATACATCAACAAAACTA 58.155 29.630 0.00 0.00 40.50 2.24
291 292 7.715657 ACATGTGTGAATACATCAACAAAACT 58.284 30.769 0.00 0.00 40.50 2.66
292 293 7.928908 ACATGTGTGAATACATCAACAAAAC 57.071 32.000 0.00 0.00 40.50 2.43
302 303 9.508642 TGGAAACTTAATACATGTGTGAATACA 57.491 29.630 9.11 0.00 34.63 2.29
303 304 9.988350 CTGGAAACTTAATACATGTGTGAATAC 57.012 33.333 9.11 0.00 0.00 1.89
304 305 9.733556 ACTGGAAACTTAATACATGTGTGAATA 57.266 29.630 9.11 0.00 0.00 1.75
305 306 8.635765 ACTGGAAACTTAATACATGTGTGAAT 57.364 30.769 9.11 0.00 0.00 2.57
306 307 8.458573 AACTGGAAACTTAATACATGTGTGAA 57.541 30.769 9.11 0.00 0.00 3.18
307 308 9.562408 TTAACTGGAAACTTAATACATGTGTGA 57.438 29.630 9.11 0.00 0.00 3.58
385 386 9.665719 CCCTAAAGGCAATAATAAAATTGTTGT 57.334 29.630 9.78 0.00 38.78 3.32
423 424 9.400638 CGTGCTTTAACTTTGACCATAATTTTA 57.599 29.630 0.00 0.00 0.00 1.52
424 425 7.383843 CCGTGCTTTAACTTTGACCATAATTTT 59.616 33.333 0.00 0.00 0.00 1.82
425 426 6.866248 CCGTGCTTTAACTTTGACCATAATTT 59.134 34.615 0.00 0.00 0.00 1.82
426 427 6.207810 TCCGTGCTTTAACTTTGACCATAATT 59.792 34.615 0.00 0.00 0.00 1.40
427 428 5.708230 TCCGTGCTTTAACTTTGACCATAAT 59.292 36.000 0.00 0.00 0.00 1.28
428 429 5.064558 TCCGTGCTTTAACTTTGACCATAA 58.935 37.500 0.00 0.00 0.00 1.90
429 430 4.643463 TCCGTGCTTTAACTTTGACCATA 58.357 39.130 0.00 0.00 0.00 2.74
430 431 3.482436 TCCGTGCTTTAACTTTGACCAT 58.518 40.909 0.00 0.00 0.00 3.55
431 432 2.920524 TCCGTGCTTTAACTTTGACCA 58.079 42.857 0.00 0.00 0.00 4.02
432 433 3.974871 TTCCGTGCTTTAACTTTGACC 57.025 42.857 0.00 0.00 0.00 4.02
433 434 6.894828 TCTATTTCCGTGCTTTAACTTTGAC 58.105 36.000 0.00 0.00 0.00 3.18
434 435 6.932400 TCTCTATTTCCGTGCTTTAACTTTGA 59.068 34.615 0.00 0.00 0.00 2.69
435 436 7.129109 TCTCTATTTCCGTGCTTTAACTTTG 57.871 36.000 0.00 0.00 0.00 2.77
436 437 7.739498 TTCTCTATTTCCGTGCTTTAACTTT 57.261 32.000 0.00 0.00 0.00 2.66
437 438 7.573283 GCTTTCTCTATTTCCGTGCTTTAACTT 60.573 37.037 0.00 0.00 0.00 2.66
438 439 6.128254 GCTTTCTCTATTTCCGTGCTTTAACT 60.128 38.462 0.00 0.00 0.00 2.24
439 440 6.022208 GCTTTCTCTATTTCCGTGCTTTAAC 58.978 40.000 0.00 0.00 0.00 2.01
440 441 5.703592 TGCTTTCTCTATTTCCGTGCTTTAA 59.296 36.000 0.00 0.00 0.00 1.52
441 442 5.242434 TGCTTTCTCTATTTCCGTGCTTTA 58.758 37.500 0.00 0.00 0.00 1.85
442 443 4.072131 TGCTTTCTCTATTTCCGTGCTTT 58.928 39.130 0.00 0.00 0.00 3.51
443 444 3.674997 TGCTTTCTCTATTTCCGTGCTT 58.325 40.909 0.00 0.00 0.00 3.91
444 445 3.334583 TGCTTTCTCTATTTCCGTGCT 57.665 42.857 0.00 0.00 0.00 4.40
445 446 4.622701 AATGCTTTCTCTATTTCCGTGC 57.377 40.909 0.00 0.00 0.00 5.34
446 447 8.594881 AGTATAATGCTTTCTCTATTTCCGTG 57.405 34.615 0.00 0.00 0.00 4.94
447 448 7.873505 GGAGTATAATGCTTTCTCTATTTCCGT 59.126 37.037 0.00 0.00 0.00 4.69
448 449 7.332182 GGGAGTATAATGCTTTCTCTATTTCCG 59.668 40.741 0.00 0.00 0.00 4.30
449 450 8.379331 AGGGAGTATAATGCTTTCTCTATTTCC 58.621 37.037 0.00 0.00 0.00 3.13
450 451 9.430623 GAGGGAGTATAATGCTTTCTCTATTTC 57.569 37.037 0.00 0.00 0.00 2.17
451 452 8.379331 GGAGGGAGTATAATGCTTTCTCTATTT 58.621 37.037 0.00 0.00 0.00 1.40
452 453 7.310113 CGGAGGGAGTATAATGCTTTCTCTATT 60.310 40.741 0.00 0.00 0.00 1.73
453 454 6.153680 CGGAGGGAGTATAATGCTTTCTCTAT 59.846 42.308 0.00 0.00 0.00 1.98
454 455 5.477291 CGGAGGGAGTATAATGCTTTCTCTA 59.523 44.000 0.00 0.00 0.00 2.43
455 456 4.282195 CGGAGGGAGTATAATGCTTTCTCT 59.718 45.833 0.00 0.00 0.00 3.10
456 457 4.039366 ACGGAGGGAGTATAATGCTTTCTC 59.961 45.833 0.00 0.00 0.00 2.87
457 458 3.967987 ACGGAGGGAGTATAATGCTTTCT 59.032 43.478 0.00 0.00 0.00 2.52
458 459 4.308265 GACGGAGGGAGTATAATGCTTTC 58.692 47.826 0.00 0.00 0.00 2.62
459 460 3.071167 GGACGGAGGGAGTATAATGCTTT 59.929 47.826 0.00 0.00 0.00 3.51
460 461 2.633481 GGACGGAGGGAGTATAATGCTT 59.367 50.000 0.00 0.00 0.00 3.91
461 462 2.249139 GGACGGAGGGAGTATAATGCT 58.751 52.381 0.00 0.00 0.00 3.79
462 463 1.067776 CGGACGGAGGGAGTATAATGC 60.068 57.143 0.00 0.00 0.00 3.56
463 464 1.544691 CCGGACGGAGGGAGTATAATG 59.455 57.143 4.40 0.00 37.50 1.90
464 465 1.426598 TCCGGACGGAGGGAGTATAAT 59.573 52.381 9.76 0.00 39.76 1.28
465 466 0.846015 TCCGGACGGAGGGAGTATAA 59.154 55.000 9.76 0.00 39.76 0.98
466 467 0.846015 TTCCGGACGGAGGGAGTATA 59.154 55.000 13.64 0.00 46.06 1.47
467 468 0.032813 TTTCCGGACGGAGGGAGTAT 60.033 55.000 13.64 0.00 46.06 2.12
468 469 0.032813 ATTTCCGGACGGAGGGAGTA 60.033 55.000 13.64 0.00 46.06 2.59
469 470 1.305887 ATTTCCGGACGGAGGGAGT 60.306 57.895 13.64 0.00 46.06 3.85
470 471 1.144057 CATTTCCGGACGGAGGGAG 59.856 63.158 13.64 2.33 46.06 4.30
471 472 0.324552 TACATTTCCGGACGGAGGGA 60.325 55.000 13.64 4.95 46.06 4.20
472 473 0.538118 TTACATTTCCGGACGGAGGG 59.462 55.000 13.64 9.67 46.06 4.30
473 474 1.479323 TCTTACATTTCCGGACGGAGG 59.521 52.381 13.64 10.00 46.06 4.30
474 475 2.537401 GTCTTACATTTCCGGACGGAG 58.463 52.381 13.64 5.31 46.06 4.63
475 476 1.135315 CGTCTTACATTTCCGGACGGA 60.135 52.381 1.83 9.76 43.69 4.69
476 477 1.135315 TCGTCTTACATTTCCGGACGG 60.135 52.381 1.83 3.96 46.20 4.79
478 479 5.541098 AAAATCGTCTTACATTTCCGGAC 57.459 39.130 1.83 0.00 0.00 4.79
479 480 5.701750 TCAAAAATCGTCTTACATTTCCGGA 59.298 36.000 0.00 0.00 0.00 5.14
480 481 5.933790 TCAAAAATCGTCTTACATTTCCGG 58.066 37.500 0.00 0.00 0.00 5.14
481 482 8.447787 AAATCAAAAATCGTCTTACATTTCCG 57.552 30.769 0.00 0.00 0.00 4.30
505 506 9.613428 CCATTCCAGAATACACTAGTATCAAAA 57.387 33.333 0.00 0.00 40.00 2.44
506 507 8.988060 TCCATTCCAGAATACACTAGTATCAAA 58.012 33.333 0.00 0.00 40.00 2.69
507 508 8.547481 TCCATTCCAGAATACACTAGTATCAA 57.453 34.615 0.00 0.00 40.00 2.57
508 509 7.233553 CCTCCATTCCAGAATACACTAGTATCA 59.766 40.741 0.00 0.00 40.00 2.15
509 510 7.310113 CCCTCCATTCCAGAATACACTAGTATC 60.310 44.444 0.00 0.00 40.00 2.24
510 511 6.498651 CCCTCCATTCCAGAATACACTAGTAT 59.501 42.308 0.00 0.00 42.66 2.12
511 512 5.839063 CCCTCCATTCCAGAATACACTAGTA 59.161 44.000 0.00 0.00 34.10 1.82
512 513 4.656112 CCCTCCATTCCAGAATACACTAGT 59.344 45.833 0.00 0.00 0.00 2.57
513 514 4.901849 TCCCTCCATTCCAGAATACACTAG 59.098 45.833 0.00 0.00 0.00 2.57
514 515 4.890988 TCCCTCCATTCCAGAATACACTA 58.109 43.478 0.00 0.00 0.00 2.74
515 516 3.736094 TCCCTCCATTCCAGAATACACT 58.264 45.455 0.00 0.00 0.00 3.55
516 517 4.713792 ATCCCTCCATTCCAGAATACAC 57.286 45.455 0.00 0.00 0.00 2.90
517 518 5.669904 TGTAATCCCTCCATTCCAGAATACA 59.330 40.000 0.00 0.00 0.00 2.29
518 519 6.187727 TGTAATCCCTCCATTCCAGAATAC 57.812 41.667 0.00 0.00 0.00 1.89
519 520 6.410388 GGTTGTAATCCCTCCATTCCAGAATA 60.410 42.308 0.00 0.00 0.00 1.75
520 521 5.449553 GTTGTAATCCCTCCATTCCAGAAT 58.550 41.667 0.00 0.00 0.00 2.40
521 522 4.325030 GGTTGTAATCCCTCCATTCCAGAA 60.325 45.833 0.00 0.00 0.00 3.02
522 523 3.202151 GGTTGTAATCCCTCCATTCCAGA 59.798 47.826 0.00 0.00 0.00 3.86
523 524 3.555966 GGTTGTAATCCCTCCATTCCAG 58.444 50.000 0.00 0.00 0.00 3.86
524 525 2.092646 CGGTTGTAATCCCTCCATTCCA 60.093 50.000 0.00 0.00 0.00 3.53
525 526 2.572290 CGGTTGTAATCCCTCCATTCC 58.428 52.381 0.00 0.00 0.00 3.01
526 527 1.947456 GCGGTTGTAATCCCTCCATTC 59.053 52.381 0.00 0.00 0.00 2.67
527 528 1.564348 AGCGGTTGTAATCCCTCCATT 59.436 47.619 0.00 0.00 0.00 3.16
528 529 1.213296 AGCGGTTGTAATCCCTCCAT 58.787 50.000 0.00 0.00 0.00 3.41
529 530 0.988832 AAGCGGTTGTAATCCCTCCA 59.011 50.000 0.00 0.00 0.00 3.86
530 531 1.379527 CAAGCGGTTGTAATCCCTCC 58.620 55.000 18.96 0.00 0.00 4.30
531 532 0.733150 GCAAGCGGTTGTAATCCCTC 59.267 55.000 26.49 5.48 35.92 4.30
532 533 1.024579 CGCAAGCGGTTGTAATCCCT 61.025 55.000 26.49 0.00 35.92 4.20
533 534 1.303091 ACGCAAGCGGTTGTAATCCC 61.303 55.000 26.49 9.42 44.69 3.85
534 535 0.179200 CACGCAAGCGGTTGTAATCC 60.179 55.000 26.49 10.10 44.69 3.01
535 536 0.515564 ACACGCAAGCGGTTGTAATC 59.484 50.000 26.49 10.46 44.69 1.75
536 537 0.515564 GACACGCAAGCGGTTGTAAT 59.484 50.000 26.49 11.48 44.69 1.89
544 545 0.458543 ACTATCAGGACACGCAAGCG 60.459 55.000 13.50 13.50 46.03 4.68
548 549 4.530710 AAAACTACTATCAGGACACGCA 57.469 40.909 0.00 0.00 0.00 5.24
724 732 1.815421 CAAACTAGGCAGCGGCGAT 60.815 57.895 12.98 0.00 42.47 4.58
725 733 2.434185 CAAACTAGGCAGCGGCGA 60.434 61.111 12.98 0.00 42.47 5.54
726 734 1.852067 AAACAAACTAGGCAGCGGCG 61.852 55.000 0.51 0.51 42.47 6.46
727 735 0.387239 CAAACAAACTAGGCAGCGGC 60.387 55.000 0.00 0.00 40.13 6.53
730 738 3.496898 GCCAAACAAACTAGGCAGC 57.503 52.632 0.00 0.00 46.26 5.25
763 788 1.135402 GCCACAAAAGACTATTGGCCG 60.135 52.381 0.00 0.00 45.95 6.13
805 835 1.809207 CACCGGCATGGATTGGAAC 59.191 57.895 0.00 0.00 42.00 3.62
883 921 0.036294 GTGGACTTCTGGTAGGCACC 60.036 60.000 0.00 0.00 46.00 5.01
953 993 4.315803 TCTCGTTTTGTCTTTGAGGGATC 58.684 43.478 0.00 0.00 0.00 3.36
969 1011 3.553828 TCTTGGTTTGGTCTTCTCGTT 57.446 42.857 0.00 0.00 0.00 3.85
980 1022 6.549952 GTCATATGCTTCTCTTCTTGGTTTG 58.450 40.000 0.00 0.00 0.00 2.93
981 1023 5.352569 CGTCATATGCTTCTCTTCTTGGTTT 59.647 40.000 0.00 0.00 0.00 3.27
982 1024 4.872691 CGTCATATGCTTCTCTTCTTGGTT 59.127 41.667 0.00 0.00 0.00 3.67
983 1025 4.437239 CGTCATATGCTTCTCTTCTTGGT 58.563 43.478 0.00 0.00 0.00 3.67
984 1026 3.247173 GCGTCATATGCTTCTCTTCTTGG 59.753 47.826 0.00 0.00 0.00 3.61
1027 1069 0.176680 ATCACCTCCATGTCGCACTC 59.823 55.000 0.00 0.00 0.00 3.51
1044 1086 1.977056 TGAGCATGGCCATCTTCATC 58.023 50.000 17.61 9.99 0.00 2.92
1093 1135 1.394917 GATGTGTTTGGTCTAGCTGCG 59.605 52.381 0.00 0.00 0.00 5.18
1094 1136 1.740025 GGATGTGTTTGGTCTAGCTGC 59.260 52.381 0.00 0.00 0.00 5.25
1095 1137 2.002586 CGGATGTGTTTGGTCTAGCTG 58.997 52.381 0.00 0.00 0.00 4.24
1096 1138 1.623811 ACGGATGTGTTTGGTCTAGCT 59.376 47.619 0.00 0.00 0.00 3.32
1099 1141 3.162666 AGAGACGGATGTGTTTGGTCTA 58.837 45.455 0.00 0.00 38.03 2.59
1115 1157 7.852945 CCAAGAATACGCAATTGAAATAGAGAC 59.147 37.037 10.34 0.00 0.00 3.36
1167 1215 1.690219 GGAGTCGATCATGGCAGGGT 61.690 60.000 0.00 0.00 0.00 4.34
1182 1230 2.719739 CAGATCATGCACCTTTGGAGT 58.280 47.619 0.00 0.00 0.00 3.85
1343 1400 1.985334 CGCTGAATACGGTGTACACA 58.015 50.000 26.51 7.66 0.00 3.72
1345 1402 0.458889 GGCGCTGAATACGGTGTACA 60.459 55.000 7.64 0.00 35.56 2.90
1388 1445 2.920912 TCGCTTTCCCTGGACGGT 60.921 61.111 0.00 0.00 0.00 4.83
1692 1752 4.254492 ACTTAGCAAAAGCCTACAGTAGC 58.746 43.478 1.50 0.00 0.00 3.58
1693 1753 5.390991 GCAACTTAGCAAAAGCCTACAGTAG 60.391 44.000 0.00 0.00 0.00 2.57
1702 1762 5.123979 ACCAGTATAGCAACTTAGCAAAAGC 59.876 40.000 0.00 0.00 36.85 3.51
1734 1794 4.035208 CGATCTAATTTACCAGCAACCACC 59.965 45.833 0.00 0.00 0.00 4.61
1812 1876 2.736192 CCGTTGACGCATATCATATGCA 59.264 45.455 25.91 7.19 44.75 3.96
1838 1902 1.761174 CCCCATTATCCCTGGTCGG 59.239 63.158 0.00 0.00 31.44 4.79
1860 1924 5.509332 GCTAGTAGTATCACTTTGGCCTACC 60.509 48.000 3.32 0.00 0.00 3.18
1861 1925 5.068723 TGCTAGTAGTATCACTTTGGCCTAC 59.931 44.000 3.32 0.00 0.00 3.18
1862 1926 5.205821 TGCTAGTAGTATCACTTTGGCCTA 58.794 41.667 3.32 0.00 0.00 3.93
1863 1927 4.030913 TGCTAGTAGTATCACTTTGGCCT 58.969 43.478 3.32 0.00 0.00 5.19
1864 1928 4.402056 TGCTAGTAGTATCACTTTGGCC 57.598 45.455 0.00 0.00 0.00 5.36
1865 1929 5.175859 TGTTGCTAGTAGTATCACTTTGGC 58.824 41.667 0.00 0.00 0.00 4.52
1866 1930 6.183360 GCTTGTTGCTAGTAGTATCACTTTGG 60.183 42.308 0.00 0.00 38.95 3.28
1867 1931 6.368791 TGCTTGTTGCTAGTAGTATCACTTTG 59.631 38.462 0.00 0.00 43.37 2.77
1868 1932 6.464222 TGCTTGTTGCTAGTAGTATCACTTT 58.536 36.000 0.00 0.00 43.37 2.66
1869 1933 6.037786 TGCTTGTTGCTAGTAGTATCACTT 57.962 37.500 0.00 0.00 43.37 3.16
1870 1934 5.661056 TGCTTGTTGCTAGTAGTATCACT 57.339 39.130 0.00 0.00 43.37 3.41
1871 1935 5.292101 CCTTGCTTGTTGCTAGTAGTATCAC 59.708 44.000 0.00 0.00 41.73 3.06
1872 1936 5.419542 CCTTGCTTGTTGCTAGTAGTATCA 58.580 41.667 0.00 0.00 41.73 2.15
1873 1937 4.271291 GCCTTGCTTGTTGCTAGTAGTATC 59.729 45.833 0.00 0.00 41.73 2.24
1874 1938 4.192317 GCCTTGCTTGTTGCTAGTAGTAT 58.808 43.478 0.00 0.00 41.73 2.12
1875 1939 3.596214 GCCTTGCTTGTTGCTAGTAGTA 58.404 45.455 0.00 0.00 41.73 1.82
1876 1940 2.427506 GCCTTGCTTGTTGCTAGTAGT 58.572 47.619 0.00 0.00 41.73 2.73
1877 1941 1.740025 GGCCTTGCTTGTTGCTAGTAG 59.260 52.381 0.00 0.00 41.73 2.57
1878 1942 1.073125 TGGCCTTGCTTGTTGCTAGTA 59.927 47.619 3.32 0.00 41.73 1.82
1879 1943 0.178992 TGGCCTTGCTTGTTGCTAGT 60.179 50.000 3.32 0.00 41.73 2.57
1880 1944 1.180029 ATGGCCTTGCTTGTTGCTAG 58.820 50.000 3.32 0.00 42.68 3.42
1881 1945 2.505650 TATGGCCTTGCTTGTTGCTA 57.494 45.000 3.32 0.00 43.37 3.49
1882 1946 1.631405 TTATGGCCTTGCTTGTTGCT 58.369 45.000 3.32 0.00 43.37 3.91
1883 1947 2.453983 TTTATGGCCTTGCTTGTTGC 57.546 45.000 3.32 0.00 43.25 4.17
1884 1948 5.981315 CAGATATTTATGGCCTTGCTTGTTG 59.019 40.000 3.32 0.00 0.00 3.33
1885 1949 5.658190 ACAGATATTTATGGCCTTGCTTGTT 59.342 36.000 3.32 0.00 0.00 2.83
1886 1950 5.203528 ACAGATATTTATGGCCTTGCTTGT 58.796 37.500 3.32 0.00 0.00 3.16
1887 1951 5.561532 CGACAGATATTTATGGCCTTGCTTG 60.562 44.000 3.32 0.00 0.00 4.01
1888 1952 4.516698 CGACAGATATTTATGGCCTTGCTT 59.483 41.667 3.32 0.00 0.00 3.91
1889 1953 4.067896 CGACAGATATTTATGGCCTTGCT 58.932 43.478 3.32 0.00 0.00 3.91
1890 1954 3.189287 CCGACAGATATTTATGGCCTTGC 59.811 47.826 3.32 0.00 0.00 4.01
1891 1955 3.189287 GCCGACAGATATTTATGGCCTTG 59.811 47.826 3.32 0.00 35.01 3.61
1892 1956 3.073062 AGCCGACAGATATTTATGGCCTT 59.927 43.478 3.32 0.00 41.90 4.35
1893 1957 2.639839 AGCCGACAGATATTTATGGCCT 59.360 45.455 3.32 0.00 41.90 5.19
1894 1958 3.059352 AGCCGACAGATATTTATGGCC 57.941 47.619 0.00 0.00 41.90 5.36
1909 1973 1.549170 GGGTTCACTTCTTCTAGCCGA 59.451 52.381 0.00 0.00 0.00 5.54
1944 2008 0.466124 AAGGGGAGAGCGACAATAGC 59.534 55.000 0.00 0.00 0.00 2.97
1953 2017 1.003233 AGCGTGAAAAGGGGAGAGC 60.003 57.895 0.00 0.00 0.00 4.09
1969 2033 4.895224 TTCTGCTGAATGAATCATGAGC 57.105 40.909 16.42 16.42 37.44 4.26
1982 2046 3.191162 ACGCATTGCTTTATTTCTGCTGA 59.809 39.130 7.12 0.00 0.00 4.26
1983 2047 3.302434 CACGCATTGCTTTATTTCTGCTG 59.698 43.478 7.12 0.00 0.00 4.41
2016 2097 7.077605 CGCTGATTATTTCACACTTTTTCAGA 58.922 34.615 0.00 0.00 31.90 3.27
2038 2135 0.400213 TTCACCCTCATTGAACCGCT 59.600 50.000 0.00 0.00 0.00 5.52
2048 2168 4.919774 TGCCTTACTATTTTCACCCTCA 57.080 40.909 0.00 0.00 0.00 3.86
2097 2217 3.566853 CTGCGCTACCATGGTGCG 61.567 66.667 36.30 36.30 43.18 5.34
2129 2253 5.504853 TCCATTCACCAGCATAACACATTA 58.495 37.500 0.00 0.00 0.00 1.90
2168 2293 2.145397 TGAGGGACGTAGATTCTGCT 57.855 50.000 0.00 0.00 0.00 4.24
2224 2512 2.027745 AGCTACATGTGACAAGTCTGGG 60.028 50.000 9.11 0.00 0.00 4.45
2233 2521 5.863935 GGAAATTGGAAAAGCTACATGTGAC 59.136 40.000 9.11 0.00 0.00 3.67
2467 2766 2.478134 GCATATGCGAGGATGAGAACAC 59.522 50.000 12.82 0.00 0.00 3.32
2511 2810 2.301870 AGCTTGGTATGTCTTGAACGGA 59.698 45.455 0.00 0.00 0.00 4.69
2512 2811 2.699954 AGCTTGGTATGTCTTGAACGG 58.300 47.619 0.00 0.00 0.00 4.44
2513 2812 3.307242 GCTAGCTTGGTATGTCTTGAACG 59.693 47.826 7.70 0.00 0.00 3.95
2514 2813 4.093556 GTGCTAGCTTGGTATGTCTTGAAC 59.906 45.833 17.23 0.00 0.00 3.18
2515 2814 4.253685 GTGCTAGCTTGGTATGTCTTGAA 58.746 43.478 17.23 0.00 0.00 2.69
2532 2831 3.497297 TTCTTATCTCGTTGCGTGCTA 57.503 42.857 0.00 0.00 0.00 3.49
2548 2847 7.669722 TCTTCTTAGCTTCTCTCTCTCTTTCTT 59.330 37.037 0.00 0.00 0.00 2.52


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.