Multiple sequence alignment - TraesCS4B01G076800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G076800 chr4B 100.000 3401 0 0 1 3401 73469087 73472487 0.000000e+00 6281.0
1 TraesCS4B01G076800 chr4B 91.321 265 15 6 346 603 86761454 86761717 4.170000e-94 355.0
2 TraesCS4B01G076800 chr4B 89.394 264 20 5 346 601 161201536 161201799 3.270000e-85 326.0
3 TraesCS4B01G076800 chr4D 95.450 2044 63 14 778 2811 49889344 49891367 0.000000e+00 3232.0
4 TraesCS4B01G076800 chr4D 98.492 597 8 1 2805 3401 49891622 49892217 0.000000e+00 1051.0
5 TraesCS4B01G076800 chr4A 93.201 2059 106 15 781 2827 547204785 547202749 0.000000e+00 2996.0
6 TraesCS4B01G076800 chr4A 89.358 592 53 6 2811 3401 547202445 547201863 0.000000e+00 736.0
7 TraesCS4B01G076800 chr4A 88.627 255 25 3 65 318 674616793 674617044 1.190000e-79 307.0
8 TraesCS4B01G076800 chr4A 84.871 271 36 4 62 331 586433485 586433751 5.590000e-68 268.0
9 TraesCS4B01G076800 chr4A 100.000 34 0 0 1968 2001 96107588 96107621 2.830000e-06 63.9
10 TraesCS4B01G076800 chr5B 90.226 266 17 6 346 602 661248782 661248517 4.200000e-89 339.0
11 TraesCS4B01G076800 chr1B 90.734 259 17 5 346 597 389308942 389309200 4.200000e-89 339.0
12 TraesCS4B01G076800 chr7D 89.139 267 23 5 346 607 465691654 465691389 9.100000e-86 327.0
13 TraesCS4B01G076800 chr7D 88.764 267 23 5 346 605 11245423 11245689 1.520000e-83 320.0
14 TraesCS4B01G076800 chr7B 89.434 265 20 7 346 602 186334619 186334355 9.100000e-86 327.0
15 TraesCS4B01G076800 chr6B 89.057 265 21 6 346 602 191444168 191443904 4.230000e-84 322.0
16 TraesCS4B01G076800 chr6B 82.424 165 9 11 622 784 151840042 151839896 3.560000e-25 126.0
17 TraesCS4B01G076800 chr3B 88.848 269 21 7 342 601 420902285 420902553 4.230000e-84 322.0
18 TraesCS4B01G076800 chr3B 86.434 258 29 5 63 318 562756199 562755946 9.290000e-71 278.0
19 TraesCS4B01G076800 chr2D 86.923 260 30 3 66 324 395940195 395940451 4.290000e-74 289.0
20 TraesCS4B01G076800 chr2D 86.047 258 32 3 62 318 8321028 8321282 1.200000e-69 274.0
21 TraesCS4B01G076800 chr3D 86.434 258 31 3 62 318 67724701 67724447 2.580000e-71 279.0
22 TraesCS4B01G076800 chr3D 85.714 259 32 4 66 324 305497152 305497405 5.590000e-68 268.0
23 TraesCS4B01G076800 chr2B 87.295 244 27 3 74 317 536821639 536821400 3.340000e-70 276.0
24 TraesCS4B01G076800 chr7A 85.075 268 34 5 66 331 79622515 79622252 5.590000e-68 268.0
25 TraesCS4B01G076800 chr6A 79.487 156 14 10 626 780 611280804 611280942 1.000000e-15 95.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G076800 chr4B 73469087 73472487 3400 False 6281.0 6281 100.0000 1 3401 1 chr4B.!!$F1 3400
1 TraesCS4B01G076800 chr4D 49889344 49892217 2873 False 2141.5 3232 96.9710 778 3401 2 chr4D.!!$F1 2623
2 TraesCS4B01G076800 chr4A 547201863 547204785 2922 True 1866.0 2996 91.2795 781 3401 2 chr4A.!!$R1 2620

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
21 22 0.108186 TTGCTATGTCCAGTCGGCAG 60.108 55.0 0.0 0.0 0.00 4.85 F
980 982 0.179018 CCAAACGATCCCCATCTCCC 60.179 60.0 0.0 0.0 0.00 4.30 F
1997 2011 0.675633 GGTTCTGCCAATGCACAAGT 59.324 50.0 0.0 0.0 44.23 3.16 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1275 1289 0.658244 CCGTGACGAAGACGACGAAA 60.658 55.0 6.54 0.0 40.41 3.46 R
2259 2276 0.907486 AGAATGCCAGCAGTAGCAGA 59.093 50.0 0.00 0.0 43.38 4.26 R
2897 3246 1.825090 TGTATCCAGCAGCACCTTTG 58.175 50.0 0.00 0.0 0.00 2.77 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 2.665777 CGTTGCTATGTCCAGTCGG 58.334 57.895 0.00 0.00 0.00 4.79
19 20 1.421410 CGTTGCTATGTCCAGTCGGC 61.421 60.000 0.00 0.00 0.00 5.54
20 21 0.391130 GTTGCTATGTCCAGTCGGCA 60.391 55.000 0.00 0.00 0.00 5.69
21 22 0.108186 TTGCTATGTCCAGTCGGCAG 60.108 55.000 0.00 0.00 0.00 4.85
22 23 1.227380 GCTATGTCCAGTCGGCAGG 60.227 63.158 0.00 0.00 0.00 4.85
23 24 1.676678 GCTATGTCCAGTCGGCAGGA 61.677 60.000 0.00 0.00 0.00 3.86
24 25 0.824109 CTATGTCCAGTCGGCAGGAA 59.176 55.000 1.37 0.00 35.29 3.36
25 26 0.535335 TATGTCCAGTCGGCAGGAAC 59.465 55.000 1.37 0.00 35.29 3.62
26 27 1.194781 ATGTCCAGTCGGCAGGAACT 61.195 55.000 1.37 0.00 43.88 3.01
27 28 1.371558 GTCCAGTCGGCAGGAACTT 59.628 57.895 1.37 0.00 34.60 2.66
28 29 0.606604 GTCCAGTCGGCAGGAACTTA 59.393 55.000 1.37 0.00 34.60 2.24
29 30 0.895530 TCCAGTCGGCAGGAACTTAG 59.104 55.000 0.00 0.00 34.60 2.18
30 31 0.741221 CCAGTCGGCAGGAACTTAGC 60.741 60.000 0.00 0.00 34.60 3.09
31 32 0.247736 CAGTCGGCAGGAACTTAGCT 59.752 55.000 0.00 0.00 34.60 3.32
32 33 0.977395 AGTCGGCAGGAACTTAGCTT 59.023 50.000 0.00 0.00 34.60 3.74
33 34 1.348036 AGTCGGCAGGAACTTAGCTTT 59.652 47.619 0.00 0.00 34.60 3.51
34 35 1.732809 GTCGGCAGGAACTTAGCTTTC 59.267 52.381 0.00 0.00 34.60 2.62
35 36 1.087501 CGGCAGGAACTTAGCTTTCC 58.912 55.000 7.48 7.48 42.68 3.13
36 37 1.464734 GGCAGGAACTTAGCTTTCCC 58.535 55.000 11.34 0.00 43.29 3.97
37 38 1.087501 GCAGGAACTTAGCTTTCCCG 58.912 55.000 11.34 3.65 43.29 5.14
38 39 1.610886 GCAGGAACTTAGCTTTCCCGT 60.611 52.381 11.34 0.00 43.29 5.28
39 40 2.779506 CAGGAACTTAGCTTTCCCGTT 58.220 47.619 11.34 0.00 43.29 4.44
40 41 3.146847 CAGGAACTTAGCTTTCCCGTTT 58.853 45.455 11.34 0.00 43.29 3.60
41 42 3.568430 CAGGAACTTAGCTTTCCCGTTTT 59.432 43.478 11.34 0.00 43.29 2.43
42 43 3.568430 AGGAACTTAGCTTTCCCGTTTTG 59.432 43.478 11.34 0.00 43.29 2.44
43 44 3.317149 GGAACTTAGCTTTCCCGTTTTGT 59.683 43.478 4.53 0.00 37.18 2.83
44 45 4.202080 GGAACTTAGCTTTCCCGTTTTGTT 60.202 41.667 4.53 0.00 37.18 2.83
45 46 5.008911 GGAACTTAGCTTTCCCGTTTTGTTA 59.991 40.000 4.53 0.00 37.18 2.41
46 47 6.294342 GGAACTTAGCTTTCCCGTTTTGTTAT 60.294 38.462 4.53 0.00 37.18 1.89
47 48 6.644248 ACTTAGCTTTCCCGTTTTGTTATT 57.356 33.333 0.00 0.00 0.00 1.40
48 49 7.046292 ACTTAGCTTTCCCGTTTTGTTATTT 57.954 32.000 0.00 0.00 0.00 1.40
49 50 7.494211 ACTTAGCTTTCCCGTTTTGTTATTTT 58.506 30.769 0.00 0.00 0.00 1.82
50 51 7.982919 ACTTAGCTTTCCCGTTTTGTTATTTTT 59.017 29.630 0.00 0.00 0.00 1.94
51 52 6.597262 AGCTTTCCCGTTTTGTTATTTTTG 57.403 33.333 0.00 0.00 0.00 2.44
52 53 6.342111 AGCTTTCCCGTTTTGTTATTTTTGA 58.658 32.000 0.00 0.00 0.00 2.69
53 54 6.819146 AGCTTTCCCGTTTTGTTATTTTTGAA 59.181 30.769 0.00 0.00 0.00 2.69
54 55 7.334671 AGCTTTCCCGTTTTGTTATTTTTGAAA 59.665 29.630 0.00 0.00 0.00 2.69
55 56 8.126074 GCTTTCCCGTTTTGTTATTTTTGAAAT 58.874 29.630 0.00 0.00 0.00 2.17
56 57 9.432077 CTTTCCCGTTTTGTTATTTTTGAAATG 57.568 29.630 0.00 0.00 0.00 2.32
57 58 6.949449 TCCCGTTTTGTTATTTTTGAAATGC 58.051 32.000 0.00 0.00 0.00 3.56
58 59 6.763610 TCCCGTTTTGTTATTTTTGAAATGCT 59.236 30.769 0.00 0.00 0.00 3.79
59 60 7.281100 TCCCGTTTTGTTATTTTTGAAATGCTT 59.719 29.630 0.00 0.00 0.00 3.91
60 61 7.912773 CCCGTTTTGTTATTTTTGAAATGCTTT 59.087 29.630 0.00 0.00 0.00 3.51
61 62 8.732227 CCGTTTTGTTATTTTTGAAATGCTTTG 58.268 29.630 0.00 0.00 0.00 2.77
62 63 9.271738 CGTTTTGTTATTTTTGAAATGCTTTGT 57.728 25.926 0.00 0.00 0.00 2.83
71 72 6.569179 TTTGAAATGCTTTGTAGTACTCCC 57.431 37.500 0.00 0.00 0.00 4.30
72 73 5.499004 TGAAATGCTTTGTAGTACTCCCT 57.501 39.130 0.00 0.00 0.00 4.20
73 74 5.876357 TGAAATGCTTTGTAGTACTCCCTT 58.124 37.500 0.00 0.00 0.00 3.95
74 75 5.938125 TGAAATGCTTTGTAGTACTCCCTTC 59.062 40.000 0.00 0.00 0.00 3.46
75 76 3.587797 TGCTTTGTAGTACTCCCTTCG 57.412 47.619 0.00 0.00 0.00 3.79
76 77 2.895404 TGCTTTGTAGTACTCCCTTCGT 59.105 45.455 0.00 0.00 0.00 3.85
77 78 3.322828 TGCTTTGTAGTACTCCCTTCGTT 59.677 43.478 0.00 0.00 0.00 3.85
78 79 4.202284 TGCTTTGTAGTACTCCCTTCGTTT 60.202 41.667 0.00 0.00 0.00 3.60
79 80 4.753610 GCTTTGTAGTACTCCCTTCGTTTT 59.246 41.667 0.00 0.00 0.00 2.43
80 81 5.237996 GCTTTGTAGTACTCCCTTCGTTTTT 59.762 40.000 0.00 0.00 0.00 1.94
81 82 6.424812 GCTTTGTAGTACTCCCTTCGTTTTTA 59.575 38.462 0.00 0.00 0.00 1.52
82 83 7.118825 GCTTTGTAGTACTCCCTTCGTTTTTAT 59.881 37.037 0.00 0.00 0.00 1.40
83 84 8.907222 TTTGTAGTACTCCCTTCGTTTTTATT 57.093 30.769 0.00 0.00 0.00 1.40
84 85 8.907222 TTGTAGTACTCCCTTCGTTTTTATTT 57.093 30.769 0.00 0.00 0.00 1.40
85 86 9.995003 TTGTAGTACTCCCTTCGTTTTTATTTA 57.005 29.630 0.00 0.00 0.00 1.40
86 87 9.995003 TGTAGTACTCCCTTCGTTTTTATTTAA 57.005 29.630 0.00 0.00 0.00 1.52
89 90 9.955102 AGTACTCCCTTCGTTTTTATTTAATCT 57.045 29.630 0.00 0.00 0.00 2.40
90 91 9.983804 GTACTCCCTTCGTTTTTATTTAATCTG 57.016 33.333 0.00 0.00 0.00 2.90
91 92 7.535997 ACTCCCTTCGTTTTTATTTAATCTGC 58.464 34.615 0.00 0.00 0.00 4.26
92 93 7.175990 ACTCCCTTCGTTTTTATTTAATCTGCA 59.824 33.333 0.00 0.00 0.00 4.41
93 94 8.062065 TCCCTTCGTTTTTATTTAATCTGCAT 57.938 30.769 0.00 0.00 0.00 3.96
94 95 9.179909 TCCCTTCGTTTTTATTTAATCTGCATA 57.820 29.630 0.00 0.00 0.00 3.14
95 96 9.965824 CCCTTCGTTTTTATTTAATCTGCATAT 57.034 29.630 0.00 0.00 0.00 1.78
124 125 9.950680 GATTTGACTGAAATCAGACTTTACAAA 57.049 29.630 16.93 15.53 46.51 2.83
125 126 9.956720 ATTTGACTGAAATCAGACTTTACAAAG 57.043 29.630 16.93 0.13 46.59 2.77
281 282 6.959671 TTTGTCAAAGTTTACAAAGCTTGG 57.040 33.333 0.00 0.00 39.88 3.61
282 283 4.429108 TGTCAAAGTTTACAAAGCTTGGC 58.571 39.130 0.00 0.00 34.12 4.52
283 284 4.159506 TGTCAAAGTTTACAAAGCTTGGCT 59.840 37.500 0.00 0.00 42.56 4.75
291 292 4.898607 AAGCTTGGCTTCGACCAA 57.101 50.000 0.00 7.24 46.77 3.67
302 303 3.467803 GCTTCGACCAAGGCTAATATGT 58.532 45.455 0.00 0.00 31.94 2.29
303 304 3.248602 GCTTCGACCAAGGCTAATATGTG 59.751 47.826 0.00 0.00 31.94 3.21
304 305 3.469008 TCGACCAAGGCTAATATGTGG 57.531 47.619 0.00 0.00 35.39 4.17
305 306 3.035363 TCGACCAAGGCTAATATGTGGA 58.965 45.455 7.62 0.00 33.39 4.02
306 307 3.069586 TCGACCAAGGCTAATATGTGGAG 59.930 47.826 7.62 2.02 33.39 3.86
307 308 3.181465 CGACCAAGGCTAATATGTGGAGT 60.181 47.826 7.62 0.00 33.39 3.85
308 309 4.038763 CGACCAAGGCTAATATGTGGAGTA 59.961 45.833 7.62 0.00 33.39 2.59
309 310 5.452776 CGACCAAGGCTAATATGTGGAGTAA 60.453 44.000 7.62 0.00 33.39 2.24
310 311 6.321821 ACCAAGGCTAATATGTGGAGTAAA 57.678 37.500 7.62 0.00 33.39 2.01
311 312 6.911308 ACCAAGGCTAATATGTGGAGTAAAT 58.089 36.000 7.62 0.00 33.39 1.40
312 313 8.041143 ACCAAGGCTAATATGTGGAGTAAATA 57.959 34.615 7.62 0.00 33.39 1.40
313 314 8.499406 ACCAAGGCTAATATGTGGAGTAAATAA 58.501 33.333 7.62 0.00 33.39 1.40
314 315 9.349713 CCAAGGCTAATATGTGGAGTAAATAAA 57.650 33.333 0.00 0.00 0.00 1.40
324 325 7.948034 TGTGGAGTAAATAAAAACATAGGGG 57.052 36.000 0.00 0.00 0.00 4.79
325 326 7.471890 TGTGGAGTAAATAAAAACATAGGGGT 58.528 34.615 0.00 0.00 0.00 4.95
326 327 7.951245 TGTGGAGTAAATAAAAACATAGGGGTT 59.049 33.333 0.00 0.00 0.00 4.11
327 328 9.465199 GTGGAGTAAATAAAAACATAGGGGTTA 57.535 33.333 0.00 0.00 0.00 2.85
328 329 9.465199 TGGAGTAAATAAAAACATAGGGGTTAC 57.535 33.333 0.00 0.00 0.00 2.50
329 330 9.690913 GGAGTAAATAAAAACATAGGGGTTACT 57.309 33.333 0.00 0.00 33.24 2.24
338 339 9.762381 AAAAACATAGGGGTTACTTATGATGAA 57.238 29.630 3.89 0.00 0.00 2.57
339 340 8.747538 AAACATAGGGGTTACTTATGATGAAC 57.252 34.615 3.89 0.00 0.00 3.18
340 341 7.691993 ACATAGGGGTTACTTATGATGAACT 57.308 36.000 3.89 0.00 0.00 3.01
341 342 8.102484 ACATAGGGGTTACTTATGATGAACTT 57.898 34.615 3.89 0.00 0.00 2.66
342 343 8.557450 ACATAGGGGTTACTTATGATGAACTTT 58.443 33.333 3.89 0.00 0.00 2.66
343 344 9.408648 CATAGGGGTTACTTATGATGAACTTTT 57.591 33.333 0.00 0.00 0.00 2.27
354 355 9.495572 CTTATGATGAACTTTTATACTCCCTCC 57.504 37.037 0.00 0.00 0.00 4.30
355 356 6.884472 TGATGAACTTTTATACTCCCTCCA 57.116 37.500 0.00 0.00 0.00 3.86
356 357 7.451731 TGATGAACTTTTATACTCCCTCCAT 57.548 36.000 0.00 0.00 0.00 3.41
357 358 7.872138 TGATGAACTTTTATACTCCCTCCATT 58.128 34.615 0.00 0.00 0.00 3.16
358 359 8.336235 TGATGAACTTTTATACTCCCTCCATTT 58.664 33.333 0.00 0.00 0.00 2.32
359 360 9.190317 GATGAACTTTTATACTCCCTCCATTTT 57.810 33.333 0.00 0.00 0.00 1.82
360 361 8.950007 TGAACTTTTATACTCCCTCCATTTTT 57.050 30.769 0.00 0.00 0.00 1.94
389 390 8.806146 AGTTTGCATATAAGATTTGGTCAAAGT 58.194 29.630 2.55 0.00 33.32 2.66
390 391 9.076596 GTTTGCATATAAGATTTGGTCAAAGTC 57.923 33.333 2.55 1.51 33.32 3.01
391 392 7.936496 TGCATATAAGATTTGGTCAAAGTCA 57.064 32.000 2.55 0.00 33.32 3.41
392 393 8.347004 TGCATATAAGATTTGGTCAAAGTCAA 57.653 30.769 2.55 0.00 33.32 3.18
393 394 8.801299 TGCATATAAGATTTGGTCAAAGTCAAA 58.199 29.630 2.55 0.00 37.29 2.69
394 395 9.076596 GCATATAAGATTTGGTCAAAGTCAAAC 57.923 33.333 2.55 0.00 35.97 2.93
399 400 7.881775 AGATTTGGTCAAAGTCAAACTTAGT 57.118 32.000 2.55 0.00 37.47 2.24
400 401 8.974060 AGATTTGGTCAAAGTCAAACTTAGTA 57.026 30.769 2.55 0.00 37.47 1.82
401 402 9.403583 AGATTTGGTCAAAGTCAAACTTAGTAA 57.596 29.630 2.55 0.00 37.47 2.24
417 418 7.242914 ACTTAGTAAAGTTTGACGGACTTTG 57.757 36.000 11.34 0.00 43.60 2.77
418 419 6.820152 ACTTAGTAAAGTTTGACGGACTTTGT 59.180 34.615 11.34 3.21 43.60 2.83
419 420 7.981225 ACTTAGTAAAGTTTGACGGACTTTGTA 59.019 33.333 11.34 2.44 43.60 2.41
420 421 6.839820 AGTAAAGTTTGACGGACTTTGTAG 57.160 37.500 11.34 0.00 44.56 2.74
421 422 6.576185 AGTAAAGTTTGACGGACTTTGTAGA 58.424 36.000 11.34 0.00 44.56 2.59
422 423 7.043565 AGTAAAGTTTGACGGACTTTGTAGAA 58.956 34.615 11.34 0.00 44.56 2.10
423 424 6.746745 AAAGTTTGACGGACTTTGTAGAAA 57.253 33.333 1.80 0.00 43.58 2.52
424 425 6.746745 AAGTTTGACGGACTTTGTAGAAAA 57.253 33.333 0.00 0.00 33.76 2.29
425 426 6.359480 AGTTTGACGGACTTTGTAGAAAAG 57.641 37.500 0.00 0.00 0.00 2.27
426 427 6.110707 AGTTTGACGGACTTTGTAGAAAAGA 58.889 36.000 4.91 0.00 0.00 2.52
427 428 6.596497 AGTTTGACGGACTTTGTAGAAAAGAA 59.404 34.615 4.91 0.00 0.00 2.52
428 429 7.282450 AGTTTGACGGACTTTGTAGAAAAGAAT 59.718 33.333 4.91 0.00 0.00 2.40
429 430 8.553696 GTTTGACGGACTTTGTAGAAAAGAATA 58.446 33.333 4.91 0.00 0.00 1.75
430 431 8.842358 TTGACGGACTTTGTAGAAAAGAATAT 57.158 30.769 4.91 0.00 0.00 1.28
431 432 8.475331 TGACGGACTTTGTAGAAAAGAATATC 57.525 34.615 4.91 0.00 0.00 1.63
432 433 8.092068 TGACGGACTTTGTAGAAAAGAATATCA 58.908 33.333 4.91 1.67 0.00 2.15
433 434 8.842358 ACGGACTTTGTAGAAAAGAATATCAA 57.158 30.769 4.91 0.00 0.00 2.57
434 435 8.718734 ACGGACTTTGTAGAAAAGAATATCAAC 58.281 33.333 4.91 0.00 0.00 3.18
435 436 8.717821 CGGACTTTGTAGAAAAGAATATCAACA 58.282 33.333 4.91 0.00 0.00 3.33
608 609 8.709272 AAAATGGAGGGAGTACTAGTATAGAC 57.291 38.462 5.75 0.00 42.77 2.59
609 610 5.839517 TGGAGGGAGTACTAGTATAGACC 57.160 47.826 5.75 6.80 42.77 3.85
610 611 5.484454 TGGAGGGAGTACTAGTATAGACCT 58.516 45.833 5.75 11.24 42.77 3.85
611 612 5.310068 TGGAGGGAGTACTAGTATAGACCTG 59.690 48.000 17.66 0.00 42.77 4.00
612 613 5.547276 GGAGGGAGTACTAGTATAGACCTGA 59.453 48.000 17.66 0.00 42.77 3.86
613 614 6.216046 GGAGGGAGTACTAGTATAGACCTGAT 59.784 46.154 17.66 6.66 42.77 2.90
614 615 7.261688 AGGGAGTACTAGTATAGACCTGATC 57.738 44.000 5.75 0.00 42.77 2.92
615 616 6.216046 AGGGAGTACTAGTATAGACCTGATCC 59.784 46.154 5.75 0.00 42.77 3.36
616 617 6.216046 GGGAGTACTAGTATAGACCTGATCCT 59.784 46.154 5.75 0.00 42.77 3.24
617 618 7.257126 GGGAGTACTAGTATAGACCTGATCCTT 60.257 44.444 5.75 0.00 42.77 3.36
618 619 8.165397 GGAGTACTAGTATAGACCTGATCCTTT 58.835 40.741 5.75 0.00 42.77 3.11
619 620 9.223099 GAGTACTAGTATAGACCTGATCCTTTC 57.777 40.741 5.75 0.00 42.77 2.62
620 621 8.165397 AGTACTAGTATAGACCTGATCCTTTCC 58.835 40.741 5.75 0.00 42.77 3.13
621 622 7.169287 ACTAGTATAGACCTGATCCTTTCCT 57.831 40.000 0.00 0.00 42.77 3.36
622 623 8.290463 ACTAGTATAGACCTGATCCTTTCCTA 57.710 38.462 0.00 0.00 42.77 2.94
623 624 8.734763 ACTAGTATAGACCTGATCCTTTCCTAA 58.265 37.037 0.00 0.00 42.77 2.69
624 625 9.589461 CTAGTATAGACCTGATCCTTTCCTAAA 57.411 37.037 0.00 0.00 42.77 1.85
625 626 8.485578 AGTATAGACCTGATCCTTTCCTAAAG 57.514 38.462 0.00 0.00 38.24 1.85
635 636 3.831715 CTTTCCTAAAGGCTTGTTCGG 57.168 47.619 0.00 0.00 34.85 4.30
636 637 2.943036 TTCCTAAAGGCTTGTTCGGT 57.057 45.000 0.00 0.00 34.44 4.69
637 638 2.943036 TCCTAAAGGCTTGTTCGGTT 57.057 45.000 0.00 0.00 34.44 4.44
638 639 4.354893 TTCCTAAAGGCTTGTTCGGTTA 57.645 40.909 0.00 0.00 34.44 2.85
639 640 4.354893 TCCTAAAGGCTTGTTCGGTTAA 57.645 40.909 0.00 0.00 34.44 2.01
640 641 4.913784 TCCTAAAGGCTTGTTCGGTTAAT 58.086 39.130 0.00 0.00 34.44 1.40
641 642 4.939439 TCCTAAAGGCTTGTTCGGTTAATC 59.061 41.667 0.00 0.00 34.44 1.75
642 643 4.095932 CCTAAAGGCTTGTTCGGTTAATCC 59.904 45.833 0.00 0.00 0.00 3.01
643 644 3.434940 AAGGCTTGTTCGGTTAATCCT 57.565 42.857 0.00 0.00 0.00 3.24
644 645 2.987232 AGGCTTGTTCGGTTAATCCTC 58.013 47.619 0.00 0.00 0.00 3.71
645 646 2.014857 GGCTTGTTCGGTTAATCCTCC 58.985 52.381 0.00 0.00 0.00 4.30
646 647 2.355818 GGCTTGTTCGGTTAATCCTCCT 60.356 50.000 0.00 0.00 0.00 3.69
647 648 2.937149 GCTTGTTCGGTTAATCCTCCTC 59.063 50.000 0.00 0.00 0.00 3.71
648 649 3.532542 CTTGTTCGGTTAATCCTCCTCC 58.467 50.000 0.00 0.00 0.00 4.30
649 650 1.835531 TGTTCGGTTAATCCTCCTCCC 59.164 52.381 0.00 0.00 0.00 4.30
650 651 1.835531 GTTCGGTTAATCCTCCTCCCA 59.164 52.381 0.00 0.00 0.00 4.37
651 652 2.237893 GTTCGGTTAATCCTCCTCCCAA 59.762 50.000 0.00 0.00 0.00 4.12
652 653 2.553464 TCGGTTAATCCTCCTCCCAAA 58.447 47.619 0.00 0.00 0.00 3.28
653 654 2.504175 TCGGTTAATCCTCCTCCCAAAG 59.496 50.000 0.00 0.00 0.00 2.77
670 671 2.149973 AAGGATTGGAGTGGATTGGC 57.850 50.000 0.00 0.00 0.00 4.52
671 672 1.002069 AGGATTGGAGTGGATTGGCA 58.998 50.000 0.00 0.00 0.00 4.92
672 673 1.358787 AGGATTGGAGTGGATTGGCAA 59.641 47.619 0.68 0.68 0.00 4.52
673 674 2.178580 GGATTGGAGTGGATTGGCAAA 58.821 47.619 3.01 0.00 0.00 3.68
674 675 2.167075 GGATTGGAGTGGATTGGCAAAG 59.833 50.000 3.01 0.00 0.00 2.77
675 676 2.673775 TTGGAGTGGATTGGCAAAGA 57.326 45.000 3.01 0.00 0.00 2.52
676 677 2.905415 TGGAGTGGATTGGCAAAGAT 57.095 45.000 3.01 0.00 0.00 2.40
677 678 3.173953 TGGAGTGGATTGGCAAAGATT 57.826 42.857 3.01 0.00 0.00 2.40
678 679 2.827322 TGGAGTGGATTGGCAAAGATTG 59.173 45.455 3.01 0.00 0.00 2.67
679 680 3.091545 GGAGTGGATTGGCAAAGATTGA 58.908 45.455 3.01 0.00 0.00 2.57
680 681 3.129988 GGAGTGGATTGGCAAAGATTGAG 59.870 47.826 3.01 0.00 0.00 3.02
681 682 4.012374 GAGTGGATTGGCAAAGATTGAGA 58.988 43.478 3.01 0.00 0.00 3.27
682 683 4.607239 AGTGGATTGGCAAAGATTGAGAT 58.393 39.130 3.01 0.00 0.00 2.75
683 684 4.401519 AGTGGATTGGCAAAGATTGAGATG 59.598 41.667 3.01 0.00 0.00 2.90
684 685 4.159135 GTGGATTGGCAAAGATTGAGATGT 59.841 41.667 3.01 0.00 0.00 3.06
685 686 4.158949 TGGATTGGCAAAGATTGAGATGTG 59.841 41.667 3.01 0.00 0.00 3.21
686 687 4.441079 GGATTGGCAAAGATTGAGATGTGG 60.441 45.833 3.01 0.00 0.00 4.17
687 688 1.820519 TGGCAAAGATTGAGATGTGGC 59.179 47.619 0.00 0.00 0.00 5.01
688 689 1.820519 GGCAAAGATTGAGATGTGGCA 59.179 47.619 0.00 0.00 0.00 4.92
689 690 2.231964 GGCAAAGATTGAGATGTGGCAA 59.768 45.455 0.00 0.00 0.00 4.52
690 691 3.306225 GGCAAAGATTGAGATGTGGCAAA 60.306 43.478 0.00 0.00 0.00 3.68
691 692 3.924686 GCAAAGATTGAGATGTGGCAAAG 59.075 43.478 0.00 0.00 0.00 2.77
692 693 4.321452 GCAAAGATTGAGATGTGGCAAAGA 60.321 41.667 0.00 0.00 0.00 2.52
693 694 5.623824 GCAAAGATTGAGATGTGGCAAAGAT 60.624 40.000 0.00 0.00 0.00 2.40
694 695 6.395629 CAAAGATTGAGATGTGGCAAAGATT 58.604 36.000 0.00 0.00 0.00 2.40
695 696 5.578005 AGATTGAGATGTGGCAAAGATTG 57.422 39.130 0.00 0.00 0.00 2.67
696 697 5.258841 AGATTGAGATGTGGCAAAGATTGA 58.741 37.500 0.00 0.00 0.00 2.57
697 698 5.357314 AGATTGAGATGTGGCAAAGATTGAG 59.643 40.000 0.00 0.00 0.00 3.02
698 699 4.290711 TGAGATGTGGCAAAGATTGAGA 57.709 40.909 0.00 0.00 0.00 3.27
699 700 4.851843 TGAGATGTGGCAAAGATTGAGAT 58.148 39.130 0.00 0.00 0.00 2.75
700 701 5.993055 TGAGATGTGGCAAAGATTGAGATA 58.007 37.500 0.00 0.00 0.00 1.98
701 702 6.598503 TGAGATGTGGCAAAGATTGAGATAT 58.401 36.000 0.00 0.00 0.00 1.63
702 703 7.738847 TGAGATGTGGCAAAGATTGAGATATA 58.261 34.615 0.00 0.00 0.00 0.86
703 704 8.380867 TGAGATGTGGCAAAGATTGAGATATAT 58.619 33.333 0.00 0.00 0.00 0.86
704 705 9.228949 GAGATGTGGCAAAGATTGAGATATATT 57.771 33.333 0.00 0.00 0.00 1.28
705 706 9.584008 AGATGTGGCAAAGATTGAGATATATTT 57.416 29.630 0.00 0.00 0.00 1.40
707 708 9.976511 ATGTGGCAAAGATTGAGATATATTTTG 57.023 29.630 0.00 0.00 0.00 2.44
708 709 9.187996 TGTGGCAAAGATTGAGATATATTTTGA 57.812 29.630 7.61 0.00 0.00 2.69
709 710 9.455847 GTGGCAAAGATTGAGATATATTTTGAC 57.544 33.333 7.61 5.65 33.75 3.18
710 711 9.412460 TGGCAAAGATTGAGATATATTTTGACT 57.588 29.630 9.80 0.00 34.16 3.41
740 741 8.824756 AGAGATTTTAAATCCCCTTAAACCTC 57.175 34.615 13.39 2.01 34.65 3.85
741 742 8.624670 AGAGATTTTAAATCCCCTTAAACCTCT 58.375 33.333 13.39 4.06 36.88 3.69
742 743 9.256228 GAGATTTTAAATCCCCTTAAACCTCTT 57.744 33.333 13.39 0.00 33.39 2.85
743 744 9.256228 AGATTTTAAATCCCCTTAAACCTCTTC 57.744 33.333 13.39 0.00 31.98 2.87
744 745 8.966155 ATTTTAAATCCCCTTAAACCTCTTCA 57.034 30.769 0.00 0.00 31.98 3.02
745 746 8.785184 TTTTAAATCCCCTTAAACCTCTTCAA 57.215 30.769 0.00 0.00 31.98 2.69
746 747 8.966155 TTTAAATCCCCTTAAACCTCTTCAAT 57.034 30.769 0.00 0.00 0.00 2.57
747 748 8.589701 TTAAATCCCCTTAAACCTCTTCAATC 57.410 34.615 0.00 0.00 0.00 2.67
748 749 4.586306 TCCCCTTAAACCTCTTCAATCC 57.414 45.455 0.00 0.00 0.00 3.01
749 750 3.268595 TCCCCTTAAACCTCTTCAATCCC 59.731 47.826 0.00 0.00 0.00 3.85
750 751 3.627492 CCCCTTAAACCTCTTCAATCCCC 60.627 52.174 0.00 0.00 0.00 4.81
751 752 3.269643 CCCTTAAACCTCTTCAATCCCCT 59.730 47.826 0.00 0.00 0.00 4.79
752 753 4.527944 CCTTAAACCTCTTCAATCCCCTC 58.472 47.826 0.00 0.00 0.00 4.30
753 754 4.018415 CCTTAAACCTCTTCAATCCCCTCA 60.018 45.833 0.00 0.00 0.00 3.86
754 755 3.728385 AAACCTCTTCAATCCCCTCAG 57.272 47.619 0.00 0.00 0.00 3.35
755 756 2.350863 ACCTCTTCAATCCCCTCAGT 57.649 50.000 0.00 0.00 0.00 3.41
756 757 2.637165 ACCTCTTCAATCCCCTCAGTT 58.363 47.619 0.00 0.00 0.00 3.16
757 758 2.573915 ACCTCTTCAATCCCCTCAGTTC 59.426 50.000 0.00 0.00 0.00 3.01
758 759 2.843113 CCTCTTCAATCCCCTCAGTTCT 59.157 50.000 0.00 0.00 0.00 3.01
759 760 4.033709 CCTCTTCAATCCCCTCAGTTCTA 58.966 47.826 0.00 0.00 0.00 2.10
760 761 4.141824 CCTCTTCAATCCCCTCAGTTCTAC 60.142 50.000 0.00 0.00 0.00 2.59
761 762 4.425772 TCTTCAATCCCCTCAGTTCTACA 58.574 43.478 0.00 0.00 0.00 2.74
762 763 4.223032 TCTTCAATCCCCTCAGTTCTACAC 59.777 45.833 0.00 0.00 0.00 2.90
763 764 2.496070 TCAATCCCCTCAGTTCTACACG 59.504 50.000 0.00 0.00 0.00 4.49
764 765 0.824759 ATCCCCTCAGTTCTACACGC 59.175 55.000 0.00 0.00 0.00 5.34
765 766 0.541063 TCCCCTCAGTTCTACACGCA 60.541 55.000 0.00 0.00 0.00 5.24
766 767 0.320374 CCCCTCAGTTCTACACGCAA 59.680 55.000 0.00 0.00 0.00 4.85
767 768 1.429463 CCCTCAGTTCTACACGCAAC 58.571 55.000 0.00 0.00 0.00 4.17
768 769 1.429463 CCTCAGTTCTACACGCAACC 58.571 55.000 0.00 0.00 0.00 3.77
769 770 1.060713 CTCAGTTCTACACGCAACCG 58.939 55.000 0.00 0.00 41.14 4.44
770 771 0.669619 TCAGTTCTACACGCAACCGA 59.330 50.000 0.00 0.00 38.29 4.69
771 772 1.067364 TCAGTTCTACACGCAACCGAA 59.933 47.619 0.00 0.00 38.29 4.30
772 773 1.191647 CAGTTCTACACGCAACCGAAC 59.808 52.381 0.00 0.00 38.29 3.95
773 774 1.202440 AGTTCTACACGCAACCGAACA 60.202 47.619 0.00 0.00 37.14 3.18
774 775 1.593933 GTTCTACACGCAACCGAACAA 59.406 47.619 0.00 0.00 38.29 2.83
775 776 1.493772 TCTACACGCAACCGAACAAG 58.506 50.000 0.00 0.00 38.29 3.16
776 777 1.067364 TCTACACGCAACCGAACAAGA 59.933 47.619 0.00 0.00 38.29 3.02
779 780 1.145377 ACGCAACCGAACAAGACCT 59.855 52.632 0.00 0.00 38.29 3.85
794 795 3.971245 AGACCTAAAGAAGACCTGCAG 57.029 47.619 6.78 6.78 0.00 4.41
863 864 1.669211 GGACTTGTCGTCTTTCGGAGG 60.669 57.143 0.00 0.00 42.44 4.30
869 870 2.585153 GTCTTTCGGAGGGAGGCC 59.415 66.667 0.00 0.00 0.00 5.19
870 871 2.121832 TCTTTCGGAGGGAGGCCA 59.878 61.111 5.01 0.00 0.00 5.36
871 872 1.990060 TCTTTCGGAGGGAGGCCAG 60.990 63.158 5.01 0.00 0.00 4.85
872 873 3.009115 TTTCGGAGGGAGGCCAGG 61.009 66.667 5.01 0.00 0.00 4.45
873 874 3.556038 TTTCGGAGGGAGGCCAGGA 62.556 63.158 5.01 0.00 0.00 3.86
874 875 4.779733 TCGGAGGGAGGCCAGGAC 62.780 72.222 5.01 0.00 0.00 3.85
895 896 1.382833 GAGACCCTGGTAGGACCCC 60.383 68.421 0.00 0.00 37.67 4.95
898 899 2.124085 CCCTGGTAGGACCCCACA 59.876 66.667 0.00 0.00 37.67 4.17
955 957 0.881159 TACAACAACAGCCGAACCCG 60.881 55.000 0.00 0.00 0.00 5.28
980 982 0.179018 CCAAACGATCCCCATCTCCC 60.179 60.000 0.00 0.00 0.00 4.30
1081 1089 0.755698 ATCCGCCACCATACTCGACT 60.756 55.000 0.00 0.00 0.00 4.18
1083 1091 1.298413 CGCCACCATACTCGACTCG 60.298 63.158 0.00 0.00 0.00 4.18
1173 1181 2.445654 CTGCTCTCCTCCCCCTCC 60.446 72.222 0.00 0.00 0.00 4.30
1275 1289 4.695231 CTCGTCACCGCCGTCGTT 62.695 66.667 0.00 0.00 0.00 3.85
1722 1736 2.279517 GAGATACCGGCGCTGGTG 60.280 66.667 44.00 20.35 43.68 4.17
1920 1934 1.009389 CCGGTGAGCAGACGAACTTC 61.009 60.000 0.00 0.00 0.00 3.01
1997 2011 0.675633 GGTTCTGCCAATGCACAAGT 59.324 50.000 0.00 0.00 44.23 3.16
2350 2367 3.936902 TTTACGTGCTCACAAGAACAC 57.063 42.857 0.00 0.00 37.47 3.32
2359 2376 1.681264 TCACAAGAACACTGCTCGAGA 59.319 47.619 18.75 0.02 0.00 4.04
2384 2401 2.153645 TGTTATGCAGTGCTCCACAAG 58.846 47.619 17.60 0.00 36.74 3.16
2479 2499 5.068591 AGGTTGTATTTTGGGAACTGTTCAC 59.931 40.000 21.01 18.51 0.00 3.18
2733 2754 6.041511 CACATCAGACCACAATAGAGAAGAG 58.958 44.000 0.00 0.00 0.00 2.85
2897 3246 6.915544 TCAGTGAGCATATTTCTTCATCAC 57.084 37.500 0.00 0.00 36.65 3.06
2984 3333 4.237724 TGAAGAGCACAGACTACAAATCG 58.762 43.478 0.00 0.00 0.00 3.34
3376 3725 0.169230 ACGACGCTGCTCTCTACTTG 59.831 55.000 0.00 0.00 0.00 3.16
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.421410 GCCGACTGGACATAGCAACG 61.421 60.000 0.00 0.00 37.49 4.10
1 2 0.391130 TGCCGACTGGACATAGCAAC 60.391 55.000 0.00 0.00 37.49 4.17
2 3 0.108186 CTGCCGACTGGACATAGCAA 60.108 55.000 0.00 0.00 37.49 3.91
3 4 1.517361 CTGCCGACTGGACATAGCA 59.483 57.895 0.00 0.00 37.49 3.49
4 5 1.227380 CCTGCCGACTGGACATAGC 60.227 63.158 0.00 0.00 37.06 2.97
5 6 0.824109 TTCCTGCCGACTGGACATAG 59.176 55.000 0.00 0.00 43.02 2.23
6 7 0.535335 GTTCCTGCCGACTGGACATA 59.465 55.000 0.00 0.00 43.02 2.29
7 8 1.194781 AGTTCCTGCCGACTGGACAT 61.195 55.000 0.00 0.00 43.02 3.06
8 9 1.407656 AAGTTCCTGCCGACTGGACA 61.408 55.000 0.00 0.00 43.02 4.02
9 10 0.606604 TAAGTTCCTGCCGACTGGAC 59.393 55.000 0.00 0.00 43.02 4.02
10 11 0.895530 CTAAGTTCCTGCCGACTGGA 59.104 55.000 0.00 0.00 41.75 3.86
11 12 0.741221 GCTAAGTTCCTGCCGACTGG 60.741 60.000 0.00 0.00 36.26 4.00
12 13 0.247736 AGCTAAGTTCCTGCCGACTG 59.752 55.000 0.00 0.00 0.00 3.51
13 14 0.977395 AAGCTAAGTTCCTGCCGACT 59.023 50.000 0.00 0.00 0.00 4.18
14 15 1.732809 GAAAGCTAAGTTCCTGCCGAC 59.267 52.381 0.00 0.00 0.00 4.79
15 16 1.338769 GGAAAGCTAAGTTCCTGCCGA 60.339 52.381 8.21 0.00 41.25 5.54
16 17 1.087501 GGAAAGCTAAGTTCCTGCCG 58.912 55.000 8.21 0.00 41.25 5.69
17 18 1.464734 GGGAAAGCTAAGTTCCTGCC 58.535 55.000 13.99 0.00 43.55 4.85
18 19 1.087501 CGGGAAAGCTAAGTTCCTGC 58.912 55.000 13.99 0.08 42.98 4.85
20 21 3.503800 AAACGGGAAAGCTAAGTTCCT 57.496 42.857 13.99 0.00 43.55 3.36
21 22 3.317149 ACAAAACGGGAAAGCTAAGTTCC 59.683 43.478 7.07 7.07 43.35 3.62
22 23 4.563337 ACAAAACGGGAAAGCTAAGTTC 57.437 40.909 0.00 0.00 0.00 3.01
23 24 4.994907 AACAAAACGGGAAAGCTAAGTT 57.005 36.364 0.00 0.00 0.00 2.66
24 25 6.644248 AATAACAAAACGGGAAAGCTAAGT 57.356 33.333 0.00 0.00 0.00 2.24
25 26 7.940178 AAAATAACAAAACGGGAAAGCTAAG 57.060 32.000 0.00 0.00 0.00 2.18
26 27 7.980099 TCAAAAATAACAAAACGGGAAAGCTAA 59.020 29.630 0.00 0.00 0.00 3.09
27 28 7.490000 TCAAAAATAACAAAACGGGAAAGCTA 58.510 30.769 0.00 0.00 0.00 3.32
28 29 6.342111 TCAAAAATAACAAAACGGGAAAGCT 58.658 32.000 0.00 0.00 0.00 3.74
29 30 6.591313 TCAAAAATAACAAAACGGGAAAGC 57.409 33.333 0.00 0.00 0.00 3.51
30 31 9.432077 CATTTCAAAAATAACAAAACGGGAAAG 57.568 29.630 0.00 0.00 0.00 2.62
31 32 7.910683 GCATTTCAAAAATAACAAAACGGGAAA 59.089 29.630 0.00 0.00 0.00 3.13
32 33 7.281100 AGCATTTCAAAAATAACAAAACGGGAA 59.719 29.630 0.00 0.00 0.00 3.97
33 34 6.763610 AGCATTTCAAAAATAACAAAACGGGA 59.236 30.769 0.00 0.00 0.00 5.14
34 35 6.953843 AGCATTTCAAAAATAACAAAACGGG 58.046 32.000 0.00 0.00 0.00 5.28
35 36 8.732227 CAAAGCATTTCAAAAATAACAAAACGG 58.268 29.630 0.00 0.00 35.03 4.44
36 37 9.271738 ACAAAGCATTTCAAAAATAACAAAACG 57.728 25.926 0.00 0.00 35.03 3.60
45 46 8.088365 GGGAGTACTACAAAGCATTTCAAAAAT 58.912 33.333 7.57 0.00 35.03 1.82
46 47 7.286775 AGGGAGTACTACAAAGCATTTCAAAAA 59.713 33.333 7.57 0.00 35.03 1.94
47 48 6.775629 AGGGAGTACTACAAAGCATTTCAAAA 59.224 34.615 7.57 0.00 35.03 2.44
48 49 6.303839 AGGGAGTACTACAAAGCATTTCAAA 58.696 36.000 7.57 0.00 35.03 2.69
49 50 5.876357 AGGGAGTACTACAAAGCATTTCAA 58.124 37.500 7.57 0.00 35.03 2.69
50 51 5.499004 AGGGAGTACTACAAAGCATTTCA 57.501 39.130 7.57 0.00 35.03 2.69
51 52 5.063564 CGAAGGGAGTACTACAAAGCATTTC 59.936 44.000 7.57 0.00 35.03 2.17
52 53 4.935808 CGAAGGGAGTACTACAAAGCATTT 59.064 41.667 7.57 0.00 40.26 2.32
53 54 4.020485 ACGAAGGGAGTACTACAAAGCATT 60.020 41.667 7.57 0.00 0.00 3.56
54 55 3.514309 ACGAAGGGAGTACTACAAAGCAT 59.486 43.478 7.57 0.00 0.00 3.79
55 56 2.895404 ACGAAGGGAGTACTACAAAGCA 59.105 45.455 7.57 0.00 0.00 3.91
56 57 3.589495 ACGAAGGGAGTACTACAAAGC 57.411 47.619 7.57 0.00 0.00 3.51
57 58 6.856135 AAAAACGAAGGGAGTACTACAAAG 57.144 37.500 7.57 0.00 0.00 2.77
58 59 8.907222 AATAAAAACGAAGGGAGTACTACAAA 57.093 30.769 7.57 0.00 0.00 2.83
59 60 8.907222 AAATAAAAACGAAGGGAGTACTACAA 57.093 30.769 7.57 0.00 0.00 2.41
60 61 9.995003 TTAAATAAAAACGAAGGGAGTACTACA 57.005 29.630 7.57 0.00 0.00 2.74
63 64 9.955102 AGATTAAATAAAAACGAAGGGAGTACT 57.045 29.630 0.00 0.00 0.00 2.73
64 65 9.983804 CAGATTAAATAAAAACGAAGGGAGTAC 57.016 33.333 0.00 0.00 0.00 2.73
65 66 8.671028 GCAGATTAAATAAAAACGAAGGGAGTA 58.329 33.333 0.00 0.00 0.00 2.59
66 67 7.175990 TGCAGATTAAATAAAAACGAAGGGAGT 59.824 33.333 0.00 0.00 0.00 3.85
67 68 7.535139 TGCAGATTAAATAAAAACGAAGGGAG 58.465 34.615 0.00 0.00 0.00 4.30
68 69 7.455641 TGCAGATTAAATAAAAACGAAGGGA 57.544 32.000 0.00 0.00 0.00 4.20
69 70 9.965824 ATATGCAGATTAAATAAAAACGAAGGG 57.034 29.630 0.00 0.00 0.00 3.95
99 100 9.956720 CTTTGTAAAGTCTGATTTCAGTCAAAT 57.043 29.630 7.42 0.00 44.12 2.32
100 101 8.956426 ACTTTGTAAAGTCTGATTTCAGTCAAA 58.044 29.630 7.42 9.16 45.65 2.69
101 102 8.506168 ACTTTGTAAAGTCTGATTTCAGTCAA 57.494 30.769 7.42 3.46 45.65 3.18
258 259 5.350091 GCCAAGCTTTGTAAACTTTGACAAA 59.650 36.000 0.00 0.00 41.90 2.83
259 260 4.867608 GCCAAGCTTTGTAAACTTTGACAA 59.132 37.500 0.00 0.00 33.81 3.18
260 261 4.159506 AGCCAAGCTTTGTAAACTTTGACA 59.840 37.500 0.00 0.00 33.89 3.58
261 262 4.682787 AGCCAAGCTTTGTAAACTTTGAC 58.317 39.130 0.00 0.00 33.89 3.18
278 279 0.398696 TTAGCCTTGGTCGAAGCCAA 59.601 50.000 7.24 7.24 45.37 4.52
279 280 0.618458 ATTAGCCTTGGTCGAAGCCA 59.382 50.000 0.00 0.00 36.62 4.75
280 281 2.614829 TATTAGCCTTGGTCGAAGCC 57.385 50.000 0.00 0.00 0.00 4.35
281 282 3.248602 CACATATTAGCCTTGGTCGAAGC 59.751 47.826 0.00 0.00 0.00 3.86
282 283 3.809832 CCACATATTAGCCTTGGTCGAAG 59.190 47.826 0.00 0.00 0.00 3.79
283 284 3.452990 TCCACATATTAGCCTTGGTCGAA 59.547 43.478 0.00 0.00 0.00 3.71
284 285 3.035363 TCCACATATTAGCCTTGGTCGA 58.965 45.455 0.00 0.00 0.00 4.20
285 286 3.181465 ACTCCACATATTAGCCTTGGTCG 60.181 47.826 0.00 0.00 0.00 4.79
286 287 4.423625 ACTCCACATATTAGCCTTGGTC 57.576 45.455 0.00 0.00 0.00 4.02
287 288 5.968676 TTACTCCACATATTAGCCTTGGT 57.031 39.130 0.00 0.00 0.00 3.67
288 289 8.918202 TTATTTACTCCACATATTAGCCTTGG 57.082 34.615 0.00 0.00 0.00 3.61
298 299 9.635404 CCCCTATGTTTTTATTTACTCCACATA 57.365 33.333 0.00 0.00 0.00 2.29
299 300 8.119891 ACCCCTATGTTTTTATTTACTCCACAT 58.880 33.333 0.00 0.00 0.00 3.21
300 301 7.471890 ACCCCTATGTTTTTATTTACTCCACA 58.528 34.615 0.00 0.00 0.00 4.17
301 302 7.949690 ACCCCTATGTTTTTATTTACTCCAC 57.050 36.000 0.00 0.00 0.00 4.02
302 303 9.465199 GTAACCCCTATGTTTTTATTTACTCCA 57.535 33.333 0.00 0.00 0.00 3.86
303 304 9.690913 AGTAACCCCTATGTTTTTATTTACTCC 57.309 33.333 0.00 0.00 0.00 3.85
312 313 9.762381 TTCATCATAAGTAACCCCTATGTTTTT 57.238 29.630 0.00 0.00 0.00 1.94
313 314 9.185680 GTTCATCATAAGTAACCCCTATGTTTT 57.814 33.333 0.00 0.00 0.00 2.43
314 315 8.557450 AGTTCATCATAAGTAACCCCTATGTTT 58.443 33.333 0.00 0.00 0.00 2.83
315 316 8.102484 AGTTCATCATAAGTAACCCCTATGTT 57.898 34.615 0.00 0.00 0.00 2.71
316 317 7.691993 AGTTCATCATAAGTAACCCCTATGT 57.308 36.000 0.00 0.00 0.00 2.29
317 318 8.980481 AAAGTTCATCATAAGTAACCCCTATG 57.020 34.615 0.00 0.00 0.00 2.23
328 329 9.495572 GGAGGGAGTATAAAAGTTCATCATAAG 57.504 37.037 0.00 0.00 0.00 1.73
329 330 8.998814 TGGAGGGAGTATAAAAGTTCATCATAA 58.001 33.333 0.00 0.00 0.00 1.90
330 331 8.561536 TGGAGGGAGTATAAAAGTTCATCATA 57.438 34.615 0.00 0.00 0.00 2.15
331 332 7.451731 TGGAGGGAGTATAAAAGTTCATCAT 57.548 36.000 0.00 0.00 0.00 2.45
332 333 6.884472 TGGAGGGAGTATAAAAGTTCATCA 57.116 37.500 0.00 0.00 0.00 3.07
333 334 8.753497 AAATGGAGGGAGTATAAAAGTTCATC 57.247 34.615 0.00 0.00 0.00 2.92
334 335 9.547279 AAAAATGGAGGGAGTATAAAAGTTCAT 57.453 29.630 0.00 0.00 0.00 2.57
335 336 8.950007 AAAAATGGAGGGAGTATAAAAGTTCA 57.050 30.769 0.00 0.00 0.00 3.18
363 364 8.806146 ACTTTGACCAAATCTTATATGCAAACT 58.194 29.630 0.00 0.00 0.00 2.66
364 365 8.986477 ACTTTGACCAAATCTTATATGCAAAC 57.014 30.769 0.00 0.00 0.00 2.93
365 366 8.801299 TGACTTTGACCAAATCTTATATGCAAA 58.199 29.630 0.00 0.00 0.00 3.68
366 367 8.347004 TGACTTTGACCAAATCTTATATGCAA 57.653 30.769 0.00 0.00 0.00 4.08
367 368 7.936496 TGACTTTGACCAAATCTTATATGCA 57.064 32.000 0.00 0.00 0.00 3.96
368 369 9.076596 GTTTGACTTTGACCAAATCTTATATGC 57.923 33.333 0.00 0.00 35.14 3.14
373 374 9.403583 ACTAAGTTTGACTTTGACCAAATCTTA 57.596 29.630 8.78 0.00 39.51 2.10
374 375 8.293699 ACTAAGTTTGACTTTGACCAAATCTT 57.706 30.769 8.78 0.00 39.51 2.40
375 376 7.881775 ACTAAGTTTGACTTTGACCAAATCT 57.118 32.000 8.78 0.00 39.51 2.40
378 379 9.016438 ACTTTACTAAGTTTGACTTTGACCAAA 57.984 29.630 8.78 0.00 41.85 3.28
379 380 8.570068 ACTTTACTAAGTTTGACTTTGACCAA 57.430 30.769 8.78 0.00 41.85 3.67
393 394 6.820152 ACAAAGTCCGTCAAACTTTACTAAGT 59.180 34.615 1.31 0.00 46.44 2.24
394 395 7.242914 ACAAAGTCCGTCAAACTTTACTAAG 57.757 36.000 1.31 0.00 43.31 2.18
395 396 8.196771 TCTACAAAGTCCGTCAAACTTTACTAA 58.803 33.333 1.31 0.00 43.31 2.24
396 397 7.715657 TCTACAAAGTCCGTCAAACTTTACTA 58.284 34.615 1.31 0.00 43.31 1.82
397 398 6.576185 TCTACAAAGTCCGTCAAACTTTACT 58.424 36.000 1.31 0.00 43.31 2.24
398 399 6.833342 TCTACAAAGTCCGTCAAACTTTAC 57.167 37.500 1.31 0.00 43.31 2.01
399 400 7.846644 TTTCTACAAAGTCCGTCAAACTTTA 57.153 32.000 1.31 0.00 43.31 1.85
400 401 6.746745 TTTCTACAAAGTCCGTCAAACTTT 57.253 33.333 0.00 0.00 45.41 2.66
401 402 6.596497 TCTTTTCTACAAAGTCCGTCAAACTT 59.404 34.615 0.00 0.00 38.59 2.66
402 403 6.110707 TCTTTTCTACAAAGTCCGTCAAACT 58.889 36.000 0.00 0.00 0.00 2.66
403 404 6.354039 TCTTTTCTACAAAGTCCGTCAAAC 57.646 37.500 0.00 0.00 0.00 2.93
404 405 6.988622 TTCTTTTCTACAAAGTCCGTCAAA 57.011 33.333 0.00 0.00 0.00 2.69
405 406 8.842358 ATATTCTTTTCTACAAAGTCCGTCAA 57.158 30.769 0.00 0.00 0.00 3.18
406 407 8.092068 TGATATTCTTTTCTACAAAGTCCGTCA 58.908 33.333 0.00 0.00 0.00 4.35
407 408 8.475331 TGATATTCTTTTCTACAAAGTCCGTC 57.525 34.615 0.00 0.00 0.00 4.79
408 409 8.718734 GTTGATATTCTTTTCTACAAAGTCCGT 58.281 33.333 0.00 0.00 0.00 4.69
409 410 8.717821 TGTTGATATTCTTTTCTACAAAGTCCG 58.282 33.333 0.00 0.00 0.00 4.79
582 583 9.145442 GTCTATACTAGTACTCCCTCCATTTTT 57.855 37.037 4.31 0.00 0.00 1.94
583 584 7.729431 GGTCTATACTAGTACTCCCTCCATTTT 59.271 40.741 4.31 0.00 0.00 1.82
584 585 7.075267 AGGTCTATACTAGTACTCCCTCCATTT 59.925 40.741 4.31 0.00 0.00 2.32
585 586 6.567260 AGGTCTATACTAGTACTCCCTCCATT 59.433 42.308 4.31 0.00 0.00 3.16
586 587 6.012333 CAGGTCTATACTAGTACTCCCTCCAT 60.012 46.154 4.31 0.00 0.00 3.41
587 588 5.310068 CAGGTCTATACTAGTACTCCCTCCA 59.690 48.000 4.31 0.00 0.00 3.86
588 589 5.547276 TCAGGTCTATACTAGTACTCCCTCC 59.453 48.000 4.31 4.01 0.00 4.30
589 590 6.684897 TCAGGTCTATACTAGTACTCCCTC 57.315 45.833 4.31 0.00 0.00 4.30
590 591 6.216046 GGATCAGGTCTATACTAGTACTCCCT 59.784 46.154 4.31 5.67 0.00 4.20
591 592 6.216046 AGGATCAGGTCTATACTAGTACTCCC 59.784 46.154 4.31 3.41 0.00 4.30
592 593 7.261688 AGGATCAGGTCTATACTAGTACTCC 57.738 44.000 4.31 5.68 0.00 3.85
593 594 9.223099 GAAAGGATCAGGTCTATACTAGTACTC 57.777 40.741 4.31 0.00 0.00 2.59
594 595 8.165397 GGAAAGGATCAGGTCTATACTAGTACT 58.835 40.741 4.31 0.00 0.00 2.73
595 596 8.165397 AGGAAAGGATCAGGTCTATACTAGTAC 58.835 40.741 4.31 0.00 0.00 2.73
596 597 8.290463 AGGAAAGGATCAGGTCTATACTAGTA 57.710 38.462 4.77 4.77 0.00 1.82
597 598 7.169287 AGGAAAGGATCAGGTCTATACTAGT 57.831 40.000 0.00 0.00 0.00 2.57
598 599 9.589461 TTTAGGAAAGGATCAGGTCTATACTAG 57.411 37.037 0.00 0.00 0.00 2.57
599 600 9.589461 CTTTAGGAAAGGATCAGGTCTATACTA 57.411 37.037 0.00 0.00 34.85 1.82
600 601 8.485578 CTTTAGGAAAGGATCAGGTCTATACT 57.514 38.462 0.00 0.00 34.85 2.12
615 616 3.146847 ACCGAACAAGCCTTTAGGAAAG 58.853 45.455 0.00 0.00 37.39 2.62
616 617 3.217681 ACCGAACAAGCCTTTAGGAAA 57.782 42.857 0.00 0.00 37.39 3.13
617 618 2.943036 ACCGAACAAGCCTTTAGGAA 57.057 45.000 0.00 0.00 37.39 3.36
618 619 2.943036 AACCGAACAAGCCTTTAGGA 57.057 45.000 0.00 0.00 37.39 2.94
619 620 4.095932 GGATTAACCGAACAAGCCTTTAGG 59.904 45.833 0.00 0.00 38.53 2.69
620 621 4.941873 AGGATTAACCGAACAAGCCTTTAG 59.058 41.667 0.00 0.00 37.24 1.85
621 622 4.913784 AGGATTAACCGAACAAGCCTTTA 58.086 39.130 0.00 0.00 37.24 1.85
622 623 3.756963 GAGGATTAACCGAACAAGCCTTT 59.243 43.478 2.01 0.00 40.54 3.11
623 624 3.344515 GAGGATTAACCGAACAAGCCTT 58.655 45.455 2.01 0.00 40.54 4.35
624 625 2.355818 GGAGGATTAACCGAACAAGCCT 60.356 50.000 0.18 0.18 43.06 4.58
625 626 2.014857 GGAGGATTAACCGAACAAGCC 58.985 52.381 0.00 0.00 44.74 4.35
626 627 2.937149 GAGGAGGATTAACCGAACAAGC 59.063 50.000 0.00 0.00 44.74 4.01
627 628 3.532542 GGAGGAGGATTAACCGAACAAG 58.467 50.000 0.00 0.00 44.74 3.16
628 629 2.237893 GGGAGGAGGATTAACCGAACAA 59.762 50.000 0.00 0.00 44.74 2.83
629 630 1.835531 GGGAGGAGGATTAACCGAACA 59.164 52.381 0.00 0.00 44.74 3.18
630 631 1.835531 TGGGAGGAGGATTAACCGAAC 59.164 52.381 0.00 0.00 44.74 3.95
631 632 2.257391 TGGGAGGAGGATTAACCGAA 57.743 50.000 0.00 0.00 44.74 4.30
632 633 2.257391 TTGGGAGGAGGATTAACCGA 57.743 50.000 0.00 0.00 44.74 4.69
633 634 2.919228 CTTTGGGAGGAGGATTAACCG 58.081 52.381 0.00 0.00 44.74 4.44
649 650 2.167075 GCCAATCCACTCCAATCCTTTG 59.833 50.000 0.00 0.00 0.00 2.77
650 651 2.225343 TGCCAATCCACTCCAATCCTTT 60.225 45.455 0.00 0.00 0.00 3.11
651 652 1.358787 TGCCAATCCACTCCAATCCTT 59.641 47.619 0.00 0.00 0.00 3.36
652 653 1.002069 TGCCAATCCACTCCAATCCT 58.998 50.000 0.00 0.00 0.00 3.24
653 654 1.851304 TTGCCAATCCACTCCAATCC 58.149 50.000 0.00 0.00 0.00 3.01
654 655 3.091545 TCTTTGCCAATCCACTCCAATC 58.908 45.455 0.00 0.00 0.00 2.67
655 656 3.173953 TCTTTGCCAATCCACTCCAAT 57.826 42.857 0.00 0.00 0.00 3.16
656 657 2.673775 TCTTTGCCAATCCACTCCAA 57.326 45.000 0.00 0.00 0.00 3.53
657 658 2.827322 CAATCTTTGCCAATCCACTCCA 59.173 45.455 0.00 0.00 0.00 3.86
658 659 3.091545 TCAATCTTTGCCAATCCACTCC 58.908 45.455 0.00 0.00 0.00 3.85
659 660 4.012374 TCTCAATCTTTGCCAATCCACTC 58.988 43.478 0.00 0.00 0.00 3.51
660 661 4.038271 TCTCAATCTTTGCCAATCCACT 57.962 40.909 0.00 0.00 0.00 4.00
661 662 4.159135 ACATCTCAATCTTTGCCAATCCAC 59.841 41.667 0.00 0.00 0.00 4.02
662 663 4.158949 CACATCTCAATCTTTGCCAATCCA 59.841 41.667 0.00 0.00 0.00 3.41
663 664 4.441079 CCACATCTCAATCTTTGCCAATCC 60.441 45.833 0.00 0.00 0.00 3.01
664 665 4.679662 CCACATCTCAATCTTTGCCAATC 58.320 43.478 0.00 0.00 0.00 2.67
665 666 3.118884 GCCACATCTCAATCTTTGCCAAT 60.119 43.478 0.00 0.00 0.00 3.16
666 667 2.231964 GCCACATCTCAATCTTTGCCAA 59.768 45.455 0.00 0.00 0.00 4.52
667 668 1.820519 GCCACATCTCAATCTTTGCCA 59.179 47.619 0.00 0.00 0.00 4.92
668 669 1.820519 TGCCACATCTCAATCTTTGCC 59.179 47.619 0.00 0.00 0.00 4.52
669 670 3.581024 TTGCCACATCTCAATCTTTGC 57.419 42.857 0.00 0.00 0.00 3.68
670 671 5.381174 TCTTTGCCACATCTCAATCTTTG 57.619 39.130 0.00 0.00 0.00 2.77
671 672 6.209986 TCAATCTTTGCCACATCTCAATCTTT 59.790 34.615 0.00 0.00 0.00 2.52
672 673 5.713389 TCAATCTTTGCCACATCTCAATCTT 59.287 36.000 0.00 0.00 0.00 2.40
673 674 5.258841 TCAATCTTTGCCACATCTCAATCT 58.741 37.500 0.00 0.00 0.00 2.40
674 675 5.356190 TCTCAATCTTTGCCACATCTCAATC 59.644 40.000 0.00 0.00 0.00 2.67
675 676 5.258841 TCTCAATCTTTGCCACATCTCAAT 58.741 37.500 0.00 0.00 0.00 2.57
676 677 4.654915 TCTCAATCTTTGCCACATCTCAA 58.345 39.130 0.00 0.00 0.00 3.02
677 678 4.290711 TCTCAATCTTTGCCACATCTCA 57.709 40.909 0.00 0.00 0.00 3.27
678 679 8.789825 ATATATCTCAATCTTTGCCACATCTC 57.210 34.615 0.00 0.00 0.00 2.75
679 680 9.584008 AAATATATCTCAATCTTTGCCACATCT 57.416 29.630 0.00 0.00 0.00 2.90
681 682 9.976511 CAAAATATATCTCAATCTTTGCCACAT 57.023 29.630 0.00 0.00 0.00 3.21
682 683 9.187996 TCAAAATATATCTCAATCTTTGCCACA 57.812 29.630 0.00 0.00 0.00 4.17
683 684 9.455847 GTCAAAATATATCTCAATCTTTGCCAC 57.544 33.333 0.00 0.00 0.00 5.01
684 685 9.412460 AGTCAAAATATATCTCAATCTTTGCCA 57.588 29.630 0.00 0.00 0.00 4.92
714 715 9.256228 GAGGTTTAAGGGGATTTAAAATCTCTT 57.744 33.333 10.02 10.02 35.10 2.85
715 716 8.624670 AGAGGTTTAAGGGGATTTAAAATCTCT 58.375 33.333 3.65 3.65 38.63 3.10
716 717 8.824756 AGAGGTTTAAGGGGATTTAAAATCTC 57.175 34.615 0.00 0.00 36.54 2.75
717 718 9.256228 GAAGAGGTTTAAGGGGATTTAAAATCT 57.744 33.333 0.00 0.00 35.10 2.40
718 719 9.031537 TGAAGAGGTTTAAGGGGATTTAAAATC 57.968 33.333 0.00 0.00 35.10 2.17
719 720 8.966155 TGAAGAGGTTTAAGGGGATTTAAAAT 57.034 30.769 0.00 0.00 35.10 1.82
720 721 8.785184 TTGAAGAGGTTTAAGGGGATTTAAAA 57.215 30.769 0.00 0.00 35.10 1.52
721 722 8.966155 ATTGAAGAGGTTTAAGGGGATTTAAA 57.034 30.769 0.00 0.00 31.86 1.52
722 723 7.618117 GGATTGAAGAGGTTTAAGGGGATTTAA 59.382 37.037 0.00 0.00 0.00 1.52
723 724 7.123383 GGATTGAAGAGGTTTAAGGGGATTTA 58.877 38.462 0.00 0.00 0.00 1.40
724 725 5.958380 GGATTGAAGAGGTTTAAGGGGATTT 59.042 40.000 0.00 0.00 0.00 2.17
725 726 5.519808 GGATTGAAGAGGTTTAAGGGGATT 58.480 41.667 0.00 0.00 0.00 3.01
726 727 4.079154 GGGATTGAAGAGGTTTAAGGGGAT 60.079 45.833 0.00 0.00 0.00 3.85
727 728 3.268595 GGGATTGAAGAGGTTTAAGGGGA 59.731 47.826 0.00 0.00 0.00 4.81
728 729 3.627492 GGGGATTGAAGAGGTTTAAGGGG 60.627 52.174 0.00 0.00 0.00 4.79
729 730 3.269643 AGGGGATTGAAGAGGTTTAAGGG 59.730 47.826 0.00 0.00 0.00 3.95
730 731 4.018415 TGAGGGGATTGAAGAGGTTTAAGG 60.018 45.833 0.00 0.00 0.00 2.69
731 732 5.179452 TGAGGGGATTGAAGAGGTTTAAG 57.821 43.478 0.00 0.00 0.00 1.85
732 733 4.601857 ACTGAGGGGATTGAAGAGGTTTAA 59.398 41.667 0.00 0.00 0.00 1.52
733 734 4.175962 ACTGAGGGGATTGAAGAGGTTTA 58.824 43.478 0.00 0.00 0.00 2.01
734 735 2.989571 ACTGAGGGGATTGAAGAGGTTT 59.010 45.455 0.00 0.00 0.00 3.27
735 736 2.637165 ACTGAGGGGATTGAAGAGGTT 58.363 47.619 0.00 0.00 0.00 3.50
736 737 2.350863 ACTGAGGGGATTGAAGAGGT 57.649 50.000 0.00 0.00 0.00 3.85
737 738 2.843113 AGAACTGAGGGGATTGAAGAGG 59.157 50.000 0.00 0.00 0.00 3.69
738 739 4.467795 TGTAGAACTGAGGGGATTGAAGAG 59.532 45.833 0.00 0.00 0.00 2.85
739 740 4.223032 GTGTAGAACTGAGGGGATTGAAGA 59.777 45.833 0.00 0.00 0.00 2.87
740 741 4.508662 GTGTAGAACTGAGGGGATTGAAG 58.491 47.826 0.00 0.00 0.00 3.02
741 742 3.056107 CGTGTAGAACTGAGGGGATTGAA 60.056 47.826 0.00 0.00 0.00 2.69
742 743 2.496070 CGTGTAGAACTGAGGGGATTGA 59.504 50.000 0.00 0.00 0.00 2.57
743 744 2.893637 CGTGTAGAACTGAGGGGATTG 58.106 52.381 0.00 0.00 0.00 2.67
744 745 1.207329 GCGTGTAGAACTGAGGGGATT 59.793 52.381 0.00 0.00 0.00 3.01
745 746 0.824759 GCGTGTAGAACTGAGGGGAT 59.175 55.000 0.00 0.00 0.00 3.85
746 747 0.541063 TGCGTGTAGAACTGAGGGGA 60.541 55.000 0.00 0.00 0.00 4.81
747 748 0.320374 TTGCGTGTAGAACTGAGGGG 59.680 55.000 0.00 0.00 0.00 4.79
748 749 1.429463 GTTGCGTGTAGAACTGAGGG 58.571 55.000 0.00 0.00 0.00 4.30
749 750 1.429463 GGTTGCGTGTAGAACTGAGG 58.571 55.000 0.00 0.00 0.00 3.86
750 751 1.060713 CGGTTGCGTGTAGAACTGAG 58.939 55.000 0.00 0.00 31.15 3.35
751 752 0.669619 TCGGTTGCGTGTAGAACTGA 59.330 50.000 0.00 0.00 35.54 3.41
752 753 1.191647 GTTCGGTTGCGTGTAGAACTG 59.808 52.381 0.06 0.00 38.40 3.16
753 754 1.202440 TGTTCGGTTGCGTGTAGAACT 60.202 47.619 7.90 0.00 41.05 3.01
754 755 1.210870 TGTTCGGTTGCGTGTAGAAC 58.789 50.000 0.28 0.28 40.90 3.01
755 756 1.862201 CTTGTTCGGTTGCGTGTAGAA 59.138 47.619 0.00 0.00 0.00 2.10
756 757 1.067364 TCTTGTTCGGTTGCGTGTAGA 59.933 47.619 0.00 0.00 0.00 2.59
757 758 1.191647 GTCTTGTTCGGTTGCGTGTAG 59.808 52.381 0.00 0.00 0.00 2.74
758 759 1.210870 GTCTTGTTCGGTTGCGTGTA 58.789 50.000 0.00 0.00 0.00 2.90
759 760 1.433837 GGTCTTGTTCGGTTGCGTGT 61.434 55.000 0.00 0.00 0.00 4.49
760 761 1.157870 AGGTCTTGTTCGGTTGCGTG 61.158 55.000 0.00 0.00 0.00 5.34
761 762 0.390124 TAGGTCTTGTTCGGTTGCGT 59.610 50.000 0.00 0.00 0.00 5.24
762 763 1.504359 TTAGGTCTTGTTCGGTTGCG 58.496 50.000 0.00 0.00 0.00 4.85
763 764 3.135994 TCTTTAGGTCTTGTTCGGTTGC 58.864 45.455 0.00 0.00 0.00 4.17
764 765 5.050295 GTCTTCTTTAGGTCTTGTTCGGTTG 60.050 44.000 0.00 0.00 0.00 3.77
765 766 5.055144 GTCTTCTTTAGGTCTTGTTCGGTT 58.945 41.667 0.00 0.00 0.00 4.44
766 767 4.502777 GGTCTTCTTTAGGTCTTGTTCGGT 60.503 45.833 0.00 0.00 0.00 4.69
767 768 3.995048 GGTCTTCTTTAGGTCTTGTTCGG 59.005 47.826 0.00 0.00 0.00 4.30
768 769 4.686554 CAGGTCTTCTTTAGGTCTTGTTCG 59.313 45.833 0.00 0.00 0.00 3.95
769 770 4.452795 GCAGGTCTTCTTTAGGTCTTGTTC 59.547 45.833 0.00 0.00 0.00 3.18
770 771 4.141482 TGCAGGTCTTCTTTAGGTCTTGTT 60.141 41.667 0.00 0.00 0.00 2.83
771 772 3.391296 TGCAGGTCTTCTTTAGGTCTTGT 59.609 43.478 0.00 0.00 0.00 3.16
772 773 3.999663 CTGCAGGTCTTCTTTAGGTCTTG 59.000 47.826 5.57 0.00 0.00 3.02
773 774 3.008485 CCTGCAGGTCTTCTTTAGGTCTT 59.992 47.826 25.53 0.00 0.00 3.01
774 775 2.569404 CCTGCAGGTCTTCTTTAGGTCT 59.431 50.000 25.53 0.00 0.00 3.85
775 776 2.355209 CCCTGCAGGTCTTCTTTAGGTC 60.355 54.545 30.63 0.00 0.00 3.85
776 777 1.630878 CCCTGCAGGTCTTCTTTAGGT 59.369 52.381 30.63 0.00 0.00 3.08
779 780 2.334977 TGTCCCTGCAGGTCTTCTTTA 58.665 47.619 30.63 5.86 36.75 1.85
794 795 8.846943 ATTTTGGATTTTATTTCAGTTGTCCC 57.153 30.769 0.00 0.00 0.00 4.46
831 832 1.546476 GACAAGTCCAGACTCGATGGT 59.454 52.381 0.00 0.00 41.58 3.55
832 833 1.468224 CGACAAGTCCAGACTCGATGG 60.468 57.143 0.00 0.00 41.58 3.51
863 864 2.039624 TCTCCTGTCCTGGCCTCC 59.960 66.667 3.32 0.00 0.00 4.30
895 896 0.657312 TTTTGTCTCACTGCGCTGTG 59.343 50.000 33.82 33.82 39.15 3.66
898 899 1.221414 GAGTTTTGTCTCACTGCGCT 58.779 50.000 9.73 0.00 34.88 5.92
955 957 2.822701 GGGATCGTTTGGGCCGTC 60.823 66.667 0.00 0.00 0.00 4.79
1083 1091 2.583593 GTGATGTCCTCGCCGAGC 60.584 66.667 9.01 0.00 0.00 5.03
1275 1289 0.658244 CCGTGACGAAGACGACGAAA 60.658 55.000 6.54 0.00 40.41 3.46
1737 1751 3.402681 CCGTGCCTGGGATCCACT 61.403 66.667 15.23 0.00 0.00 4.00
1793 1807 4.104183 GGTCCAAATCCCCGCCGA 62.104 66.667 0.00 0.00 0.00 5.54
1905 1919 1.269778 CCAGTGAAGTTCGTCTGCTCA 60.270 52.381 17.15 0.00 0.00 4.26
1920 1934 5.106555 CCTTGAATTACTAACAGCACCAGTG 60.107 44.000 0.00 0.00 0.00 3.66
1997 2011 1.022982 CAATGCAAGCGCCTCTCTGA 61.023 55.000 2.29 0.00 37.32 3.27
2259 2276 0.907486 AGAATGCCAGCAGTAGCAGA 59.093 50.000 0.00 0.00 43.38 4.26
2350 2367 3.371898 TGCATAACAAATGTCTCGAGCAG 59.628 43.478 7.81 0.76 0.00 4.24
2359 2376 3.057315 GTGGAGCACTGCATAACAAATGT 60.057 43.478 3.30 0.00 32.40 2.71
2384 2401 5.314923 TGGATGCTAAAACATCAGAAAGC 57.685 39.130 6.82 0.00 46.81 3.51
2576 2596 5.853936 TCCAGAAATCAAGTATCCATACCG 58.146 41.667 0.00 0.00 33.79 4.02
2897 3246 1.825090 TGTATCCAGCAGCACCTTTG 58.175 50.000 0.00 0.00 0.00 2.77
2984 3333 6.311200 GGATAAAACCAGTTCATGCAATCAAC 59.689 38.462 0.00 0.00 0.00 3.18
3376 3725 7.068686 AGTTCTAGATTGGTTATTCCCTAGC 57.931 40.000 0.00 0.00 34.77 3.42


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.