Multiple sequence alignment - TraesCS4B01G075700
BLAST Results
Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.
qseqid | sseqid | percentage.identical | alignment.length | no.mismatch | no.gap.openings | qstart | qend | sstart | send | evalue | bitscore | |
---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS4B01G075700 | chr4B | 100.000 | 2502 | 0 | 0 | 1 | 2502 | 71601917 | 71599416 | 0.000000e+00 | 4621 |
1 | TraesCS4B01G075700 | chr4B | 97.059 | 170 | 5 | 0 | 1128 | 1297 | 389466777 | 389466946 | 1.130000e-73 | 287 |
2 | TraesCS4B01G075700 | chr4D | 90.517 | 928 | 71 | 7 | 208 | 1130 | 48720375 | 48719460 | 0.000000e+00 | 1210 |
3 | TraesCS4B01G075700 | chr4D | 90.946 | 740 | 38 | 15 | 1790 | 2502 | 48718531 | 48717794 | 0.000000e+00 | 968 |
4 | TraesCS4B01G075700 | chr4D | 89.044 | 502 | 34 | 15 | 1293 | 1778 | 48719462 | 48718966 | 9.900000e-169 | 603 |
5 | TraesCS4B01G075700 | chr4D | 98.246 | 171 | 2 | 1 | 1125 | 1295 | 75782049 | 75782218 | 5.230000e-77 | 298 |
6 | TraesCS4B01G075700 | chr4D | 95.109 | 184 | 5 | 3 | 1109 | 1292 | 230473278 | 230473457 | 1.130000e-73 | 287 |
7 | TraesCS4B01G075700 | chr4A | 85.929 | 732 | 57 | 23 | 1791 | 2502 | 548518477 | 548519182 | 0.000000e+00 | 739 |
8 | TraesCS4B01G075700 | chr4A | 91.480 | 446 | 31 | 5 | 689 | 1130 | 548515021 | 548515463 | 7.650000e-170 | 606 |
9 | TraesCS4B01G075700 | chr4A | 90.112 | 445 | 32 | 3 | 209 | 652 | 548514586 | 548515019 | 3.610000e-158 | 568 |
10 | TraesCS4B01G075700 | chr4A | 89.826 | 344 | 27 | 3 | 1293 | 1628 | 548515461 | 548515804 | 3.820000e-118 | 435 |
11 | TraesCS4B01G075700 | chr4A | 90.230 | 174 | 17 | 0 | 50 | 223 | 548514398 | 548514571 | 6.960000e-56 | 228 |
12 | TraesCS4B01G075700 | chr1D | 97.159 | 176 | 4 | 1 | 1124 | 1299 | 206955532 | 206955706 | 1.880000e-76 | 296 |
13 | TraesCS4B01G075700 | chr7D | 96.154 | 182 | 3 | 4 | 1117 | 1294 | 39001268 | 39001449 | 6.770000e-76 | 294 |
14 | TraesCS4B01G075700 | chr5D | 95.628 | 183 | 7 | 1 | 1112 | 1294 | 25040161 | 25039980 | 2.430000e-75 | 292 |
15 | TraesCS4B01G075700 | chr7A | 95.604 | 182 | 4 | 4 | 1120 | 1298 | 320981160 | 320981340 | 3.150000e-74 | 289 |
16 | TraesCS4B01G075700 | chr6D | 94.681 | 188 | 7 | 3 | 1111 | 1298 | 142867022 | 142867206 | 3.150000e-74 | 289 |
17 | TraesCS4B01G075700 | chr2D | 94.709 | 189 | 4 | 6 | 1111 | 1295 | 309971398 | 309971584 | 3.150000e-74 | 289 |
These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.
query | scaffold | start | end | length | rev.comp | avg.bitscore | max.bitscore | avg.percent.identical | query.start | query.end | num_hsp | groupid | homo_length | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS4B01G075700 | chr4B | 71599416 | 71601917 | 2501 | True | 4621.0 | 4621 | 100.0000 | 1 | 2502 | 1 | chr4B.!!$R1 | 2501 |
1 | TraesCS4B01G075700 | chr4D | 48717794 | 48720375 | 2581 | True | 927.0 | 1210 | 90.1690 | 208 | 2502 | 3 | chr4D.!!$R1 | 2294 |
2 | TraesCS4B01G075700 | chr4A | 548514398 | 548519182 | 4784 | False | 515.2 | 739 | 89.5154 | 50 | 2502 | 5 | chr4A.!!$F1 | 2452 |
AutoCloner calculated primer pairsThese primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
185 | 186 | 0.541392 | TAGTAGCACCACTGCCCATG | 59.459 | 55.0 | 0.0 | 0.0 | 45.53 | 3.66 | F |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
1628 | 1671 | 0.239879 | AACACGCAAATACCCGCTTG | 59.76 | 50.0 | 0.0 | 0.0 | 33.9 | 4.01 | R |
All possible primersListed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
26 | 27 | 8.761575 | AGCACATTATTGTAATTCAACAAAGG | 57.238 | 30.769 | 0.00 | 0.19 | 42.33 | 3.11 |
27 | 28 | 8.584157 | AGCACATTATTGTAATTCAACAAAGGA | 58.416 | 29.630 | 0.00 | 0.00 | 42.33 | 3.36 |
28 | 29 | 9.369904 | GCACATTATTGTAATTCAACAAAGGAT | 57.630 | 29.630 | 0.00 | 0.00 | 42.33 | 3.24 |
40 | 41 | 6.024552 | TCAACAAAGGATGAATTACCTTGC | 57.975 | 37.500 | 10.46 | 0.00 | 44.44 | 4.01 |
41 | 42 | 5.774690 | TCAACAAAGGATGAATTACCTTGCT | 59.225 | 36.000 | 10.46 | 0.00 | 44.44 | 3.91 |
42 | 43 | 6.267471 | TCAACAAAGGATGAATTACCTTGCTT | 59.733 | 34.615 | 10.46 | 4.53 | 44.44 | 3.91 |
43 | 44 | 6.670695 | ACAAAGGATGAATTACCTTGCTTT | 57.329 | 33.333 | 10.46 | 3.75 | 44.44 | 3.51 |
44 | 45 | 6.691508 | ACAAAGGATGAATTACCTTGCTTTC | 58.308 | 36.000 | 10.46 | 0.00 | 44.44 | 2.62 |
45 | 46 | 6.267471 | ACAAAGGATGAATTACCTTGCTTTCA | 59.733 | 34.615 | 10.46 | 0.00 | 44.44 | 2.69 |
46 | 47 | 6.916360 | AAGGATGAATTACCTTGCTTTCAA | 57.084 | 33.333 | 9.34 | 0.00 | 43.69 | 2.69 |
47 | 48 | 6.916360 | AGGATGAATTACCTTGCTTTCAAA | 57.084 | 33.333 | 0.00 | 0.00 | 32.35 | 2.69 |
48 | 49 | 7.301868 | AGGATGAATTACCTTGCTTTCAAAA | 57.698 | 32.000 | 0.00 | 0.00 | 32.35 | 2.44 |
89 | 90 | 5.357742 | TTTTGCAGTATCTCCTAGATGCA | 57.642 | 39.130 | 7.58 | 4.16 | 39.41 | 3.96 |
91 | 92 | 5.557576 | TTGCAGTATCTCCTAGATGCATT | 57.442 | 39.130 | 0.00 | 0.00 | 39.41 | 3.56 |
92 | 93 | 4.891260 | TGCAGTATCTCCTAGATGCATTG | 58.109 | 43.478 | 0.00 | 0.00 | 39.41 | 2.82 |
98 | 99 | 3.865446 | TCTCCTAGATGCATTGTGTGTG | 58.135 | 45.455 | 0.00 | 0.00 | 0.00 | 3.82 |
101 | 102 | 5.363580 | TCTCCTAGATGCATTGTGTGTGATA | 59.636 | 40.000 | 0.00 | 0.00 | 0.00 | 2.15 |
113 | 114 | 5.164620 | TGTGTGTGATATGACTCCATGTT | 57.835 | 39.130 | 0.00 | 0.00 | 34.31 | 2.71 |
120 | 121 | 7.223582 | GTGTGATATGACTCCATGTTGTTAGAG | 59.776 | 40.741 | 0.00 | 0.00 | 34.31 | 2.43 |
185 | 186 | 0.541392 | TAGTAGCACCACTGCCCATG | 59.459 | 55.000 | 0.00 | 0.00 | 45.53 | 3.66 |
195 | 196 | 0.892755 | ACTGCCCATGACAAAGCATG | 59.107 | 50.000 | 0.00 | 0.00 | 44.05 | 4.06 |
202 | 203 | 4.458397 | CCCATGACAAAGCATGATCTAGT | 58.542 | 43.478 | 0.00 | 0.00 | 46.64 | 2.57 |
229 | 259 | 2.938956 | AGGTGTTCTGTTAGCAGCTT | 57.061 | 45.000 | 0.00 | 0.00 | 43.65 | 3.74 |
233 | 263 | 4.036852 | AGGTGTTCTGTTAGCAGCTTTTTC | 59.963 | 41.667 | 0.00 | 0.00 | 43.65 | 2.29 |
276 | 306 | 5.662211 | AAGCATCAAAACAGTTTCATTGC | 57.338 | 34.783 | 14.64 | 14.64 | 0.00 | 3.56 |
302 | 332 | 7.167968 | CACAAGGTTTTTGTGTTCATCATGTAG | 59.832 | 37.037 | 10.93 | 0.00 | 43.40 | 2.74 |
303 | 333 | 5.772521 | AGGTTTTTGTGTTCATCATGTAGC | 58.227 | 37.500 | 0.00 | 0.00 | 0.00 | 3.58 |
304 | 334 | 5.536161 | AGGTTTTTGTGTTCATCATGTAGCT | 59.464 | 36.000 | 0.00 | 0.00 | 0.00 | 3.32 |
305 | 335 | 5.858581 | GGTTTTTGTGTTCATCATGTAGCTC | 59.141 | 40.000 | 0.00 | 0.00 | 0.00 | 4.09 |
306 | 336 | 6.437928 | GTTTTTGTGTTCATCATGTAGCTCA | 58.562 | 36.000 | 0.00 | 0.00 | 0.00 | 4.26 |
307 | 337 | 6.822667 | TTTTGTGTTCATCATGTAGCTCAT | 57.177 | 33.333 | 0.00 | 0.00 | 37.22 | 2.90 |
308 | 338 | 7.920160 | TTTTGTGTTCATCATGTAGCTCATA | 57.080 | 32.000 | 0.00 | 0.00 | 34.67 | 2.15 |
309 | 339 | 8.510243 | TTTTGTGTTCATCATGTAGCTCATAT | 57.490 | 30.769 | 0.00 | 0.00 | 34.67 | 1.78 |
310 | 340 | 7.486802 | TTGTGTTCATCATGTAGCTCATATG | 57.513 | 36.000 | 0.00 | 0.00 | 34.67 | 1.78 |
327 | 357 | 5.181009 | TCATATGAGAAGTTTGCAGGACTG | 58.819 | 41.667 | 0.00 | 0.00 | 0.00 | 3.51 |
328 | 358 | 3.777106 | ATGAGAAGTTTGCAGGACTGA | 57.223 | 42.857 | 3.00 | 0.00 | 0.00 | 3.41 |
346 | 377 | 0.687354 | GACAGTGGTGGTGGAGATGT | 59.313 | 55.000 | 0.00 | 0.00 | 0.00 | 3.06 |
356 | 387 | 4.009675 | GTGGTGGAGATGTTTTATCTGCA | 58.990 | 43.478 | 6.97 | 6.97 | 42.79 | 4.41 |
386 | 417 | 6.094742 | TGTTGACTTCATGACTTTGTTGCTTA | 59.905 | 34.615 | 0.00 | 0.00 | 0.00 | 3.09 |
452 | 483 | 4.842531 | ATGATATGTGACACCCTGAACA | 57.157 | 40.909 | 2.45 | 0.00 | 0.00 | 3.18 |
487 | 518 | 4.216257 | GTGCTTAGGAATTCAGTGAGCAAA | 59.784 | 41.667 | 21.00 | 4.67 | 39.96 | 3.68 |
497 | 528 | 7.653311 | GGAATTCAGTGAGCAAATTTTACTTGT | 59.347 | 33.333 | 7.93 | 0.00 | 0.00 | 3.16 |
529 | 560 | 2.660189 | ATGTAATGCTTGCTGGTTGC | 57.340 | 45.000 | 0.00 | 0.00 | 43.25 | 4.17 |
537 | 568 | 1.067354 | GCTTGCTGGTTGCTTGCTTAT | 60.067 | 47.619 | 0.00 | 0.00 | 43.37 | 1.73 |
555 | 586 | 5.106038 | TGCTTATTGAATTCAGGCTGAGTTG | 60.106 | 40.000 | 27.17 | 13.92 | 0.00 | 3.16 |
562 | 593 | 2.009681 | TCAGGCTGAGTTGTCCAGTA | 57.990 | 50.000 | 14.43 | 0.00 | 34.29 | 2.74 |
566 | 597 | 2.706190 | AGGCTGAGTTGTCCAGTAGTTT | 59.294 | 45.455 | 0.00 | 0.00 | 34.29 | 2.66 |
572 | 603 | 7.298854 | GCTGAGTTGTCCAGTAGTTTTATTTC | 58.701 | 38.462 | 0.00 | 0.00 | 34.29 | 2.17 |
592 | 623 | 9.944376 | TTATTTCCAATATGAGATGTACCTAGC | 57.056 | 33.333 | 0.00 | 0.00 | 0.00 | 3.42 |
596 | 627 | 8.664669 | TCCAATATGAGATGTACCTAGCATTA | 57.335 | 34.615 | 0.00 | 0.00 | 0.00 | 1.90 |
597 | 628 | 9.271921 | TCCAATATGAGATGTACCTAGCATTAT | 57.728 | 33.333 | 0.00 | 0.00 | 0.00 | 1.28 |
608 | 639 | 8.029782 | TGTACCTAGCATTATGTCCATTAGTT | 57.970 | 34.615 | 0.00 | 0.00 | 0.00 | 2.24 |
609 | 640 | 9.150028 | TGTACCTAGCATTATGTCCATTAGTTA | 57.850 | 33.333 | 0.00 | 0.00 | 0.00 | 2.24 |
624 | 655 | 7.965107 | GTCCATTAGTTATCAAAAGTTCAGCAG | 59.035 | 37.037 | 0.00 | 0.00 | 0.00 | 4.24 |
632 | 663 | 9.495754 | GTTATCAAAAGTTCAGCAGAATATGAC | 57.504 | 33.333 | 0.00 | 0.00 | 35.92 | 3.06 |
657 | 688 | 7.436080 | ACAATGCAGAAATATTTCGCCTAAATG | 59.564 | 33.333 | 26.95 | 21.76 | 41.92 | 2.32 |
766 | 797 | 2.031508 | TGTAGTTTGTTGCTTTAGCGGC | 60.032 | 45.455 | 0.00 | 0.00 | 45.83 | 6.53 |
785 | 816 | 1.230635 | CGGAGTGGTTGCTCAGGTTG | 61.231 | 60.000 | 0.00 | 0.00 | 37.24 | 3.77 |
793 | 824 | 4.218417 | GTGGTTGCTCAGGTTGATTACATT | 59.782 | 41.667 | 0.00 | 0.00 | 0.00 | 2.71 |
809 | 840 | 3.439857 | ACATTACCATGTTGCACCTCT | 57.560 | 42.857 | 0.00 | 0.00 | 41.16 | 3.69 |
810 | 841 | 3.766545 | ACATTACCATGTTGCACCTCTT | 58.233 | 40.909 | 0.00 | 0.00 | 41.16 | 2.85 |
830 | 861 | 5.488341 | TCTTAGTACATCAGGACTTTTGGC | 58.512 | 41.667 | 0.00 | 0.00 | 0.00 | 4.52 |
836 | 867 | 5.841957 | ACATCAGGACTTTTGGCATTATC | 57.158 | 39.130 | 0.00 | 0.00 | 0.00 | 1.75 |
840 | 871 | 5.263599 | TCAGGACTTTTGGCATTATCATGT | 58.736 | 37.500 | 0.00 | 0.00 | 32.28 | 3.21 |
933 | 968 | 3.181510 | GGATACTCACCGTGTTTGCATTC | 60.182 | 47.826 | 0.00 | 0.00 | 0.00 | 2.67 |
938 | 973 | 3.669536 | TCACCGTGTTTGCATTCATCTA | 58.330 | 40.909 | 0.00 | 0.00 | 0.00 | 1.98 |
975 | 1010 | 7.983484 | GCCCATTTTTGTATCTCAAATCAAGAT | 59.017 | 33.333 | 0.00 | 0.00 | 44.15 | 2.40 |
990 | 1025 | 9.561069 | TCAAATCAAGATTAGGTTCCTATAAGC | 57.439 | 33.333 | 0.00 | 0.00 | 0.00 | 3.09 |
1011 | 1046 | 3.766051 | GCTCTGAAGAAATGGAAATGGGT | 59.234 | 43.478 | 0.00 | 0.00 | 0.00 | 4.51 |
1026 | 1061 | 4.309950 | GGTGACAAGGCGGTCGGT | 62.310 | 66.667 | 7.64 | 0.00 | 40.72 | 4.69 |
1136 | 1171 | 8.709308 | ACATGCTTCATATCTAATATACTCCCC | 58.291 | 37.037 | 0.00 | 0.00 | 0.00 | 4.81 |
1137 | 1172 | 7.676683 | TGCTTCATATCTAATATACTCCCCC | 57.323 | 40.000 | 0.00 | 0.00 | 0.00 | 5.40 |
1156 | 1191 | 4.788679 | CCCCCGTTCCTAAATATTTGTCT | 58.211 | 43.478 | 11.05 | 0.00 | 0.00 | 3.41 |
1157 | 1192 | 5.198207 | CCCCCGTTCCTAAATATTTGTCTT | 58.802 | 41.667 | 11.05 | 0.00 | 0.00 | 3.01 |
1158 | 1193 | 5.655090 | CCCCCGTTCCTAAATATTTGTCTTT | 59.345 | 40.000 | 11.05 | 0.00 | 0.00 | 2.52 |
1159 | 1194 | 6.153851 | CCCCCGTTCCTAAATATTTGTCTTTT | 59.846 | 38.462 | 11.05 | 0.00 | 0.00 | 2.27 |
1160 | 1195 | 7.310175 | CCCCCGTTCCTAAATATTTGTCTTTTT | 60.310 | 37.037 | 11.05 | 0.00 | 0.00 | 1.94 |
1161 | 1196 | 8.741841 | CCCCGTTCCTAAATATTTGTCTTTTTA | 58.258 | 33.333 | 11.05 | 0.00 | 0.00 | 1.52 |
1162 | 1197 | 9.783256 | CCCGTTCCTAAATATTTGTCTTTTTAG | 57.217 | 33.333 | 11.05 | 0.00 | 33.47 | 1.85 |
1177 | 1212 | 9.965824 | TTGTCTTTTTAGAGATTTCAAATGGAC | 57.034 | 29.630 | 0.00 | 0.00 | 0.00 | 4.02 |
1178 | 1213 | 9.354673 | TGTCTTTTTAGAGATTTCAAATGGACT | 57.645 | 29.630 | 0.00 | 0.00 | 0.00 | 3.85 |
1194 | 1229 | 3.900971 | TGGACTACCACATACGGATGTA | 58.099 | 45.455 | 14.23 | 0.00 | 44.82 | 2.29 |
1195 | 1230 | 4.476297 | TGGACTACCACATACGGATGTAT | 58.524 | 43.478 | 14.23 | 7.46 | 44.82 | 2.29 |
1196 | 1231 | 5.633117 | TGGACTACCACATACGGATGTATA | 58.367 | 41.667 | 14.23 | 8.27 | 44.82 | 1.47 |
1197 | 1232 | 6.250711 | TGGACTACCACATACGGATGTATAT | 58.749 | 40.000 | 14.23 | 4.37 | 44.82 | 0.86 |
1198 | 1233 | 7.404481 | TGGACTACCACATACGGATGTATATA | 58.596 | 38.462 | 14.23 | 5.36 | 44.82 | 0.86 |
1199 | 1234 | 7.555195 | TGGACTACCACATACGGATGTATATAG | 59.445 | 40.741 | 14.23 | 16.35 | 44.82 | 1.31 |
1200 | 1235 | 7.772292 | GGACTACCACATACGGATGTATATAGA | 59.228 | 40.741 | 22.62 | 5.04 | 44.82 | 1.98 |
1201 | 1236 | 8.503458 | ACTACCACATACGGATGTATATAGAC | 57.497 | 38.462 | 22.62 | 0.00 | 44.82 | 2.59 |
1202 | 1237 | 8.105197 | ACTACCACATACGGATGTATATAGACA | 58.895 | 37.037 | 22.62 | 2.07 | 44.82 | 3.41 |
1203 | 1238 | 7.956328 | ACCACATACGGATGTATATAGACAT | 57.044 | 36.000 | 14.23 | 12.70 | 44.82 | 3.06 |
1205 | 1240 | 9.642343 | ACCACATACGGATGTATATAGACATAT | 57.358 | 33.333 | 14.23 | 5.08 | 44.82 | 1.78 |
1234 | 1269 | 6.734104 | AGTGTAGATTCACTCATTTTGCTC | 57.266 | 37.500 | 0.00 | 0.00 | 44.07 | 4.26 |
1235 | 1270 | 5.645497 | AGTGTAGATTCACTCATTTTGCTCC | 59.355 | 40.000 | 0.00 | 0.00 | 44.07 | 4.70 |
1236 | 1271 | 4.631377 | TGTAGATTCACTCATTTTGCTCCG | 59.369 | 41.667 | 0.00 | 0.00 | 0.00 | 4.63 |
1237 | 1272 | 3.679389 | AGATTCACTCATTTTGCTCCGT | 58.321 | 40.909 | 0.00 | 0.00 | 0.00 | 4.69 |
1238 | 1273 | 4.832248 | AGATTCACTCATTTTGCTCCGTA | 58.168 | 39.130 | 0.00 | 0.00 | 0.00 | 4.02 |
1239 | 1274 | 5.431765 | AGATTCACTCATTTTGCTCCGTAT | 58.568 | 37.500 | 0.00 | 0.00 | 0.00 | 3.06 |
1240 | 1275 | 4.944962 | TTCACTCATTTTGCTCCGTATG | 57.055 | 40.909 | 0.00 | 0.00 | 0.00 | 2.39 |
1241 | 1276 | 3.937814 | TCACTCATTTTGCTCCGTATGT | 58.062 | 40.909 | 0.00 | 0.00 | 0.00 | 2.29 |
1242 | 1277 | 5.079689 | TCACTCATTTTGCTCCGTATGTA | 57.920 | 39.130 | 0.00 | 0.00 | 0.00 | 2.29 |
1243 | 1278 | 5.109210 | TCACTCATTTTGCTCCGTATGTAG | 58.891 | 41.667 | 0.00 | 0.00 | 0.00 | 2.74 |
1244 | 1279 | 4.870426 | CACTCATTTTGCTCCGTATGTAGT | 59.130 | 41.667 | 0.00 | 0.00 | 0.00 | 2.73 |
1245 | 1280 | 5.005779 | CACTCATTTTGCTCCGTATGTAGTC | 59.994 | 44.000 | 0.00 | 0.00 | 0.00 | 2.59 |
1246 | 1281 | 5.079689 | TCATTTTGCTCCGTATGTAGTCA | 57.920 | 39.130 | 0.00 | 0.00 | 0.00 | 3.41 |
1247 | 1282 | 5.670485 | TCATTTTGCTCCGTATGTAGTCAT | 58.330 | 37.500 | 0.00 | 0.00 | 38.00 | 3.06 |
1248 | 1283 | 6.112734 | TCATTTTGCTCCGTATGTAGTCATT | 58.887 | 36.000 | 0.00 | 0.00 | 35.70 | 2.57 |
1249 | 1284 | 6.597672 | TCATTTTGCTCCGTATGTAGTCATTT | 59.402 | 34.615 | 0.00 | 0.00 | 35.70 | 2.32 |
1250 | 1285 | 5.794687 | TTTGCTCCGTATGTAGTCATTTG | 57.205 | 39.130 | 0.00 | 0.00 | 35.70 | 2.32 |
1251 | 1286 | 4.465632 | TGCTCCGTATGTAGTCATTTGT | 57.534 | 40.909 | 0.00 | 0.00 | 35.70 | 2.83 |
1252 | 1287 | 4.827692 | TGCTCCGTATGTAGTCATTTGTT | 58.172 | 39.130 | 0.00 | 0.00 | 35.70 | 2.83 |
1253 | 1288 | 4.629634 | TGCTCCGTATGTAGTCATTTGTTG | 59.370 | 41.667 | 0.00 | 0.00 | 35.70 | 3.33 |
1254 | 1289 | 4.868171 | GCTCCGTATGTAGTCATTTGTTGA | 59.132 | 41.667 | 0.00 | 0.00 | 35.70 | 3.18 |
1255 | 1290 | 5.350365 | GCTCCGTATGTAGTCATTTGTTGAA | 59.650 | 40.000 | 0.00 | 0.00 | 35.70 | 2.69 |
1256 | 1291 | 6.128391 | GCTCCGTATGTAGTCATTTGTTGAAA | 60.128 | 38.462 | 0.00 | 0.00 | 35.70 | 2.69 |
1257 | 1292 | 7.414098 | GCTCCGTATGTAGTCATTTGTTGAAAT | 60.414 | 37.037 | 0.00 | 0.00 | 35.70 | 2.17 |
1258 | 1293 | 7.970384 | TCCGTATGTAGTCATTTGTTGAAATC | 58.030 | 34.615 | 0.00 | 0.00 | 35.70 | 2.17 |
1259 | 1294 | 7.822334 | TCCGTATGTAGTCATTTGTTGAAATCT | 59.178 | 33.333 | 0.00 | 0.00 | 35.70 | 2.40 |
1260 | 1295 | 8.116753 | CCGTATGTAGTCATTTGTTGAAATCTC | 58.883 | 37.037 | 0.00 | 0.00 | 35.70 | 2.75 |
1261 | 1296 | 8.873830 | CGTATGTAGTCATTTGTTGAAATCTCT | 58.126 | 33.333 | 0.00 | 0.00 | 35.70 | 3.10 |
1265 | 1300 | 9.996554 | TGTAGTCATTTGTTGAAATCTCTAGAA | 57.003 | 29.630 | 0.00 | 0.00 | 35.70 | 2.10 |
1268 | 1303 | 9.784531 | AGTCATTTGTTGAAATCTCTAGAAAGA | 57.215 | 29.630 | 0.00 | 0.00 | 35.70 | 2.52 |
1269 | 1304 | 9.818796 | GTCATTTGTTGAAATCTCTAGAAAGAC | 57.181 | 33.333 | 0.00 | 0.00 | 35.70 | 3.01 |
1270 | 1305 | 9.559732 | TCATTTGTTGAAATCTCTAGAAAGACA | 57.440 | 29.630 | 0.00 | 0.00 | 28.65 | 3.41 |
1285 | 1320 | 9.595823 | TCTAGAAAGACAAATATTTAGGAACGG | 57.404 | 33.333 | 0.00 | 0.00 | 0.00 | 4.44 |
1286 | 1321 | 9.595823 | CTAGAAAGACAAATATTTAGGAACGGA | 57.404 | 33.333 | 0.00 | 0.00 | 0.00 | 4.69 |
1287 | 1322 | 8.494016 | AGAAAGACAAATATTTAGGAACGGAG | 57.506 | 34.615 | 0.00 | 0.00 | 0.00 | 4.63 |
1288 | 1323 | 7.553044 | AGAAAGACAAATATTTAGGAACGGAGG | 59.447 | 37.037 | 0.00 | 0.00 | 0.00 | 4.30 |
1289 | 1324 | 5.681639 | AGACAAATATTTAGGAACGGAGGG | 58.318 | 41.667 | 0.00 | 0.00 | 0.00 | 4.30 |
1290 | 1325 | 5.427481 | AGACAAATATTTAGGAACGGAGGGA | 59.573 | 40.000 | 0.00 | 0.00 | 0.00 | 4.20 |
1291 | 1326 | 5.681639 | ACAAATATTTAGGAACGGAGGGAG | 58.318 | 41.667 | 0.00 | 0.00 | 0.00 | 4.30 |
1304 | 1339 | 2.496070 | CGGAGGGAGTATGTTTCTGTGA | 59.504 | 50.000 | 0.00 | 0.00 | 0.00 | 3.58 |
1306 | 1341 | 4.383118 | CGGAGGGAGTATGTTTCTGTGATT | 60.383 | 45.833 | 0.00 | 0.00 | 0.00 | 2.57 |
1313 | 1348 | 9.561069 | GGGAGTATGTTTCTGTGATTATGTATT | 57.439 | 33.333 | 0.00 | 0.00 | 0.00 | 1.89 |
1363 | 1398 | 3.879295 | CCTAGCCATTTGTTGACGATGAT | 59.121 | 43.478 | 0.00 | 0.00 | 0.00 | 2.45 |
1429 | 1464 | 1.228003 | CCCTGTGTTTGCCGGTGTA | 60.228 | 57.895 | 1.90 | 0.00 | 0.00 | 2.90 |
1435 | 1470 | 0.464735 | TGTTTGCCGGTGTAGTGCTT | 60.465 | 50.000 | 1.90 | 0.00 | 0.00 | 3.91 |
1472 | 1507 | 7.290110 | AGTATATTCATCGGTCTTGTGATGA | 57.710 | 36.000 | 1.02 | 1.02 | 46.79 | 2.92 |
1495 | 1530 | 3.564225 | TGAAGTCGAAGAAAAAGAAGGCC | 59.436 | 43.478 | 0.00 | 0.00 | 39.69 | 5.19 |
1503 | 1538 | 2.893489 | AGAAAAAGAAGGCCGCTTGATT | 59.107 | 40.909 | 13.61 | 11.78 | 0.00 | 2.57 |
1513 | 1548 | 2.948093 | CGCTTGATTGATTTGGCGG | 58.052 | 52.632 | 0.00 | 0.00 | 39.12 | 6.13 |
1575 | 1613 | 3.508793 | CCTAGTAGACAGGTTTCGTGGAA | 59.491 | 47.826 | 0.00 | 0.00 | 0.00 | 3.53 |
1593 | 1631 | 5.967674 | CGTGGAAGATTGTATTTCATTGAGC | 59.032 | 40.000 | 0.00 | 0.00 | 0.00 | 4.26 |
1621 | 1664 | 3.190874 | GTGATCTAAGGCTTTCTCGTGG | 58.809 | 50.000 | 4.45 | 0.00 | 0.00 | 4.94 |
1628 | 1671 | 0.796927 | GGCTTTCTCGTGGCACTTAC | 59.203 | 55.000 | 16.72 | 0.00 | 0.00 | 2.34 |
1629 | 1672 | 1.508632 | GCTTTCTCGTGGCACTTACA | 58.491 | 50.000 | 16.72 | 0.00 | 0.00 | 2.41 |
1630 | 1673 | 1.871039 | GCTTTCTCGTGGCACTTACAA | 59.129 | 47.619 | 16.72 | 2.78 | 0.00 | 2.41 |
1631 | 1674 | 2.096218 | GCTTTCTCGTGGCACTTACAAG | 60.096 | 50.000 | 16.72 | 12.91 | 0.00 | 3.16 |
1632 | 1675 | 1.508632 | TTCTCGTGGCACTTACAAGC | 58.491 | 50.000 | 16.72 | 0.00 | 0.00 | 4.01 |
1636 | 1694 | 1.599797 | GTGGCACTTACAAGCGGGT | 60.600 | 57.895 | 11.13 | 0.00 | 0.00 | 5.28 |
1652 | 1713 | 1.805345 | CGGGTATTTGCGTGTTGGTAA | 59.195 | 47.619 | 0.00 | 0.00 | 0.00 | 2.85 |
1657 | 1718 | 6.566141 | GGGTATTTGCGTGTTGGTAATTATT | 58.434 | 36.000 | 0.00 | 0.00 | 0.00 | 1.40 |
1720 | 1799 | 8.736244 | TGTTACATCGATAATTCTCGGATGATA | 58.264 | 33.333 | 21.09 | 12.66 | 39.13 | 2.15 |
1725 | 1804 | 9.736023 | CATCGATAATTCTCGGATGATATGTTA | 57.264 | 33.333 | 12.61 | 0.00 | 39.13 | 2.41 |
1778 | 1857 | 3.808728 | TGCTTCTGCTTCTGTGTAGTTT | 58.191 | 40.909 | 0.00 | 0.00 | 40.48 | 2.66 |
1779 | 1858 | 3.561310 | TGCTTCTGCTTCTGTGTAGTTTG | 59.439 | 43.478 | 0.00 | 0.00 | 40.48 | 2.93 |
1780 | 1859 | 3.809832 | GCTTCTGCTTCTGTGTAGTTTGA | 59.190 | 43.478 | 0.00 | 0.00 | 36.03 | 2.69 |
1781 | 1860 | 4.319118 | GCTTCTGCTTCTGTGTAGTTTGAC | 60.319 | 45.833 | 0.00 | 0.00 | 36.03 | 3.18 |
1782 | 1861 | 4.400529 | TCTGCTTCTGTGTAGTTTGACA | 57.599 | 40.909 | 0.00 | 0.00 | 0.00 | 3.58 |
1784 | 1863 | 6.096673 | TCTGCTTCTGTGTAGTTTGACATA | 57.903 | 37.500 | 0.00 | 0.00 | 0.00 | 2.29 |
1785 | 1864 | 6.521162 | TCTGCTTCTGTGTAGTTTGACATAA | 58.479 | 36.000 | 0.00 | 0.00 | 0.00 | 1.90 |
1786 | 1865 | 7.161404 | TCTGCTTCTGTGTAGTTTGACATAAT | 58.839 | 34.615 | 0.00 | 0.00 | 0.00 | 1.28 |
1787 | 1866 | 7.118245 | TCTGCTTCTGTGTAGTTTGACATAATG | 59.882 | 37.037 | 0.00 | 0.00 | 0.00 | 1.90 |
1788 | 1867 | 6.024049 | GCTTCTGTGTAGTTTGACATAATGC | 58.976 | 40.000 | 0.00 | 0.00 | 0.00 | 3.56 |
1809 | 4475 | 7.992754 | ATGCTTCTGACTCTAAACATTTTCT | 57.007 | 32.000 | 0.00 | 0.00 | 0.00 | 2.52 |
1839 | 4505 | 5.801350 | TTCGCTGAAATGAAGTAGATTGG | 57.199 | 39.130 | 0.00 | 0.00 | 0.00 | 3.16 |
1847 | 4513 | 6.319658 | TGAAATGAAGTAGATTGGCATTCCTC | 59.680 | 38.462 | 5.80 | 0.60 | 0.00 | 3.71 |
1866 | 4532 | 6.796705 | TCCTCGAGAAAACAAAATTAGACC | 57.203 | 37.500 | 15.71 | 0.00 | 0.00 | 3.85 |
1937 | 4603 | 2.030363 | ACAATGGGTGCACACAAATACG | 60.030 | 45.455 | 28.30 | 14.73 | 30.29 | 3.06 |
1942 | 4608 | 2.034812 | GGGTGCACACAAATACGGAAAA | 59.965 | 45.455 | 20.43 | 0.00 | 0.00 | 2.29 |
1943 | 4609 | 3.305744 | GGGTGCACACAAATACGGAAAAT | 60.306 | 43.478 | 20.43 | 0.00 | 0.00 | 1.82 |
1944 | 4610 | 3.672867 | GGTGCACACAAATACGGAAAATG | 59.327 | 43.478 | 20.43 | 0.00 | 0.00 | 2.32 |
1946 | 4612 | 4.979197 | GTGCACACAAATACGGAAAATGAA | 59.021 | 37.500 | 13.17 | 0.00 | 0.00 | 2.57 |
1972 | 4648 | 5.555966 | AGAAGAGCTACTGGGAAAGAAAAG | 58.444 | 41.667 | 0.00 | 0.00 | 0.00 | 2.27 |
1974 | 4650 | 5.568620 | AGAGCTACTGGGAAAGAAAAGAA | 57.431 | 39.130 | 0.00 | 0.00 | 0.00 | 2.52 |
2001 | 4681 | 7.309920 | ACGTTCTCAAATAAAAATTATGGCGT | 58.690 | 30.769 | 0.00 | 0.00 | 0.00 | 5.68 |
2009 | 4689 | 9.347934 | CAAATAAAAATTATGGCGTCACTAACA | 57.652 | 29.630 | 0.00 | 0.00 | 0.00 | 2.41 |
2011 | 4691 | 9.567848 | AATAAAAATTATGGCGTCACTAACAAG | 57.432 | 29.630 | 0.00 | 0.00 | 0.00 | 3.16 |
2023 | 4703 | 5.576774 | CGTCACTAACAAGAAGTCATATGCA | 59.423 | 40.000 | 0.00 | 0.00 | 0.00 | 3.96 |
2032 | 4712 | 5.435686 | AGAAGTCATATGCAAGGGTACAA | 57.564 | 39.130 | 0.00 | 0.00 | 0.00 | 2.41 |
2047 | 4727 | 8.682710 | GCAAGGGTACAAATTGTTATATCTTCA | 58.317 | 33.333 | 3.17 | 0.00 | 0.00 | 3.02 |
2114 | 4805 | 4.537135 | ATGTCACTACCAGTACAACCAG | 57.463 | 45.455 | 0.00 | 0.00 | 0.00 | 4.00 |
2249 | 4940 | 1.131504 | CGCCTGCGCAAATAAAAGGTA | 59.868 | 47.619 | 13.05 | 0.00 | 34.03 | 3.08 |
2275 | 4966 | 2.615912 | GCTCTTCCATTACATCCACTGC | 59.384 | 50.000 | 0.00 | 0.00 | 0.00 | 4.40 |
2418 | 5113 | 7.839200 | CCACTTTTATATATATGGGGAAAGGGG | 59.161 | 40.741 | 15.80 | 15.80 | 39.12 | 4.79 |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
0 | 1 | 9.853555 | CCTTTGTTGAATTACAATAATGTGCTA | 57.146 | 29.630 | 0.00 | 0.00 | 40.84 | 3.49 |
1 | 2 | 8.584157 | TCCTTTGTTGAATTACAATAATGTGCT | 58.416 | 29.630 | 0.00 | 0.00 | 40.84 | 4.40 |
2 | 3 | 8.755696 | TCCTTTGTTGAATTACAATAATGTGC | 57.244 | 30.769 | 0.00 | 0.00 | 40.84 | 4.57 |
14 | 15 | 7.603784 | GCAAGGTAATTCATCCTTTGTTGAATT | 59.396 | 33.333 | 13.50 | 13.50 | 45.79 | 2.17 |
15 | 16 | 7.038799 | AGCAAGGTAATTCATCCTTTGTTGAAT | 60.039 | 33.333 | 6.72 | 0.00 | 41.44 | 2.57 |
16 | 17 | 6.267471 | AGCAAGGTAATTCATCCTTTGTTGAA | 59.733 | 34.615 | 6.72 | 0.00 | 41.44 | 2.69 |
17 | 18 | 5.774690 | AGCAAGGTAATTCATCCTTTGTTGA | 59.225 | 36.000 | 6.72 | 0.00 | 41.44 | 3.18 |
18 | 19 | 6.029346 | AGCAAGGTAATTCATCCTTTGTTG | 57.971 | 37.500 | 6.72 | 0.44 | 41.44 | 3.33 |
19 | 20 | 6.670695 | AAGCAAGGTAATTCATCCTTTGTT | 57.329 | 33.333 | 6.72 | 2.64 | 41.44 | 2.83 |
20 | 21 | 6.267471 | TGAAAGCAAGGTAATTCATCCTTTGT | 59.733 | 34.615 | 6.72 | 0.00 | 41.44 | 2.83 |
21 | 22 | 6.690530 | TGAAAGCAAGGTAATTCATCCTTTG | 58.309 | 36.000 | 6.72 | 5.20 | 41.44 | 2.77 |
22 | 23 | 6.916360 | TGAAAGCAAGGTAATTCATCCTTT | 57.084 | 33.333 | 6.72 | 0.00 | 41.44 | 3.11 |
23 | 24 | 6.916360 | TTGAAAGCAAGGTAATTCATCCTT | 57.084 | 33.333 | 4.36 | 4.36 | 43.79 | 3.36 |
24 | 25 | 6.916360 | TTTGAAAGCAAGGTAATTCATCCT | 57.084 | 33.333 | 0.00 | 0.00 | 35.04 | 3.24 |
25 | 26 | 7.961325 | TTTTTGAAAGCAAGGTAATTCATCC | 57.039 | 32.000 | 0.00 | 0.00 | 35.04 | 3.51 |
61 | 62 | 6.579042 | ATCTAGGAGATACTGCAAAAGGCAAA | 60.579 | 38.462 | 0.00 | 0.00 | 42.24 | 3.68 |
64 | 65 | 4.408182 | TCTAGGAGATACTGCAAAAGGC | 57.592 | 45.455 | 0.00 | 0.00 | 45.13 | 4.35 |
89 | 90 | 5.748402 | ACATGGAGTCATATCACACACAAT | 58.252 | 37.500 | 0.00 | 0.00 | 31.33 | 2.71 |
91 | 92 | 4.824479 | ACATGGAGTCATATCACACACA | 57.176 | 40.909 | 0.00 | 0.00 | 31.33 | 3.72 |
92 | 93 | 4.937620 | ACAACATGGAGTCATATCACACAC | 59.062 | 41.667 | 0.00 | 0.00 | 31.33 | 3.82 |
98 | 99 | 9.553064 | AATTCTCTAACAACATGGAGTCATATC | 57.447 | 33.333 | 0.00 | 0.00 | 31.33 | 1.63 |
101 | 102 | 7.628234 | AGAATTCTCTAACAACATGGAGTCAT | 58.372 | 34.615 | 0.88 | 0.00 | 0.00 | 3.06 |
149 | 150 | 9.211485 | GGTGCTACTACAACAACTAAGATTTTA | 57.789 | 33.333 | 0.00 | 0.00 | 0.00 | 1.52 |
185 | 186 | 6.915544 | TCATCAACTAGATCATGCTTTGTC | 57.084 | 37.500 | 0.00 | 0.00 | 33.72 | 3.18 |
195 | 196 | 6.876257 | ACAGAACACCTTTCATCAACTAGATC | 59.124 | 38.462 | 0.00 | 0.00 | 33.72 | 2.75 |
202 | 203 | 5.129634 | TGCTAACAGAACACCTTTCATCAA | 58.870 | 37.500 | 0.00 | 0.00 | 0.00 | 2.57 |
265 | 295 | 5.122082 | ACAAAAACCTTGTGCAATGAAACTG | 59.878 | 36.000 | 0.00 | 0.00 | 0.00 | 3.16 |
294 | 324 | 7.172875 | GCAAACTTCTCATATGAGCTACATGAT | 59.827 | 37.037 | 25.27 | 5.22 | 41.80 | 2.45 |
302 | 332 | 4.034975 | GTCCTGCAAACTTCTCATATGAGC | 59.965 | 45.833 | 25.27 | 14.48 | 41.80 | 4.26 |
303 | 333 | 5.293814 | CAGTCCTGCAAACTTCTCATATGAG | 59.706 | 44.000 | 24.32 | 24.32 | 43.36 | 2.90 |
304 | 334 | 5.046376 | TCAGTCCTGCAAACTTCTCATATGA | 60.046 | 40.000 | 5.07 | 5.07 | 0.00 | 2.15 |
305 | 335 | 5.064452 | GTCAGTCCTGCAAACTTCTCATATG | 59.936 | 44.000 | 0.00 | 0.00 | 0.00 | 1.78 |
306 | 336 | 5.181748 | GTCAGTCCTGCAAACTTCTCATAT | 58.818 | 41.667 | 0.00 | 0.00 | 0.00 | 1.78 |
307 | 337 | 4.040339 | TGTCAGTCCTGCAAACTTCTCATA | 59.960 | 41.667 | 0.00 | 0.00 | 0.00 | 2.15 |
308 | 338 | 3.181451 | TGTCAGTCCTGCAAACTTCTCAT | 60.181 | 43.478 | 0.00 | 0.00 | 0.00 | 2.90 |
309 | 339 | 2.170397 | TGTCAGTCCTGCAAACTTCTCA | 59.830 | 45.455 | 0.00 | 0.00 | 0.00 | 3.27 |
310 | 340 | 2.805099 | CTGTCAGTCCTGCAAACTTCTC | 59.195 | 50.000 | 0.00 | 0.00 | 0.00 | 2.87 |
327 | 357 | 0.687354 | ACATCTCCACCACCACTGTC | 59.313 | 55.000 | 0.00 | 0.00 | 0.00 | 3.51 |
328 | 358 | 1.140312 | AACATCTCCACCACCACTGT | 58.860 | 50.000 | 0.00 | 0.00 | 0.00 | 3.55 |
346 | 377 | 8.389779 | TGAAGTCAACAAGTATGCAGATAAAA | 57.610 | 30.769 | 0.00 | 0.00 | 0.00 | 1.52 |
356 | 387 | 7.807977 | ACAAAGTCATGAAGTCAACAAGTAT | 57.192 | 32.000 | 0.00 | 0.00 | 0.00 | 2.12 |
386 | 417 | 6.435164 | AGCTATTATTTTCAGGGTGGTGAAT | 58.565 | 36.000 | 0.00 | 0.00 | 36.34 | 2.57 |
429 | 460 | 5.065218 | GTGTTCAGGGTGTCACATATCATTC | 59.935 | 44.000 | 5.12 | 0.00 | 0.00 | 2.67 |
435 | 466 | 5.755409 | AATAGTGTTCAGGGTGTCACATA | 57.245 | 39.130 | 5.12 | 0.00 | 33.84 | 2.29 |
452 | 483 | 4.650972 | TCCTAAGCACCAACCAAATAGT | 57.349 | 40.909 | 0.00 | 0.00 | 0.00 | 2.12 |
487 | 518 | 8.891720 | ACATTTCAATGTTGCAACAAGTAAAAT | 58.108 | 25.926 | 34.06 | 28.11 | 46.95 | 1.82 |
529 | 560 | 5.125097 | ACTCAGCCTGAATTCAATAAGCAAG | 59.875 | 40.000 | 9.88 | 12.60 | 0.00 | 4.01 |
537 | 568 | 3.149196 | GGACAACTCAGCCTGAATTCAA | 58.851 | 45.455 | 9.88 | 0.00 | 0.00 | 2.69 |
566 | 597 | 9.944376 | GCTAGGTACATCTCATATTGGAAATAA | 57.056 | 33.333 | 0.00 | 0.00 | 0.00 | 1.40 |
572 | 603 | 9.322773 | CATAATGCTAGGTACATCTCATATTGG | 57.677 | 37.037 | 0.00 | 0.00 | 0.00 | 3.16 |
596 | 627 | 8.462016 | GCTGAACTTTTGATAACTAATGGACAT | 58.538 | 33.333 | 0.00 | 0.00 | 0.00 | 3.06 |
597 | 628 | 7.446931 | TGCTGAACTTTTGATAACTAATGGACA | 59.553 | 33.333 | 0.00 | 0.00 | 0.00 | 4.02 |
608 | 639 | 8.791327 | TGTCATATTCTGCTGAACTTTTGATA | 57.209 | 30.769 | 8.32 | 5.40 | 34.71 | 2.15 |
609 | 640 | 7.692460 | TGTCATATTCTGCTGAACTTTTGAT | 57.308 | 32.000 | 8.32 | 0.00 | 34.71 | 2.57 |
624 | 655 | 8.633408 | GCGAAATATTTCTGCATTGTCATATTC | 58.367 | 33.333 | 26.02 | 2.40 | 36.99 | 1.75 |
632 | 663 | 7.436080 | ACATTTAGGCGAAATATTTCTGCATTG | 59.564 | 33.333 | 28.99 | 23.17 | 35.45 | 2.82 |
664 | 695 | 6.992664 | TGCCCAATGCCATATTATACTTTT | 57.007 | 33.333 | 0.00 | 0.00 | 40.16 | 2.27 |
685 | 716 | 0.451383 | TAACTGCGATTGTGCCATGC | 59.549 | 50.000 | 0.00 | 0.00 | 0.00 | 4.06 |
737 | 768 | 7.170998 | GCTAAAGCAACAAACTACAGTAGAAGA | 59.829 | 37.037 | 14.94 | 0.00 | 41.59 | 2.87 |
739 | 770 | 6.073980 | CGCTAAAGCAACAAACTACAGTAGAA | 60.074 | 38.462 | 14.94 | 0.00 | 42.21 | 2.10 |
753 | 784 | 2.033194 | ACTCCGCCGCTAAAGCAAC | 61.033 | 57.895 | 2.44 | 0.00 | 42.21 | 4.17 |
766 | 797 | 1.071471 | AACCTGAGCAACCACTCCG | 59.929 | 57.895 | 0.00 | 0.00 | 35.72 | 4.63 |
785 | 816 | 5.590259 | AGAGGTGCAACATGGTAATGTAATC | 59.410 | 40.000 | 3.64 | 0.00 | 46.58 | 1.75 |
793 | 824 | 4.528987 | TGTACTAAGAGGTGCAACATGGTA | 59.471 | 41.667 | 3.64 | 0.00 | 39.98 | 3.25 |
809 | 840 | 5.235850 | TGCCAAAAGTCCTGATGTACTAA | 57.764 | 39.130 | 0.00 | 0.00 | 0.00 | 2.24 |
810 | 841 | 4.901197 | TGCCAAAAGTCCTGATGTACTA | 57.099 | 40.909 | 0.00 | 0.00 | 0.00 | 1.82 |
933 | 968 | 3.708403 | TGGGCTTCCTGCATATAGATG | 57.292 | 47.619 | 0.00 | 0.00 | 45.15 | 2.90 |
938 | 973 | 3.776417 | ACAAAAATGGGCTTCCTGCATAT | 59.224 | 39.130 | 0.00 | 0.00 | 45.15 | 1.78 |
975 | 1010 | 7.973048 | TTCTTCAGAGCTTATAGGAACCTAA | 57.027 | 36.000 | 4.63 | 0.00 | 31.73 | 2.69 |
989 | 1024 | 3.766051 | ACCCATTTCCATTTCTTCAGAGC | 59.234 | 43.478 | 0.00 | 0.00 | 0.00 | 4.09 |
990 | 1025 | 5.012239 | TCACCCATTTCCATTTCTTCAGAG | 58.988 | 41.667 | 0.00 | 0.00 | 0.00 | 3.35 |
1011 | 1046 | 2.504274 | AAGACCGACCGCCTTGTCA | 61.504 | 57.895 | 0.00 | 0.00 | 34.88 | 3.58 |
1026 | 1061 | 2.102420 | ACTCGTCATGGTCAACACAAGA | 59.898 | 45.455 | 0.00 | 0.00 | 0.00 | 3.02 |
1134 | 1169 | 4.788679 | AGACAAATATTTAGGAACGGGGG | 58.211 | 43.478 | 0.00 | 0.00 | 0.00 | 5.40 |
1135 | 1170 | 6.769134 | AAAGACAAATATTTAGGAACGGGG | 57.231 | 37.500 | 0.00 | 0.00 | 0.00 | 5.73 |
1136 | 1171 | 9.783256 | CTAAAAAGACAAATATTTAGGAACGGG | 57.217 | 33.333 | 0.00 | 0.00 | 33.69 | 5.28 |
1151 | 1186 | 9.965824 | GTCCATTTGAAATCTCTAAAAAGACAA | 57.034 | 29.630 | 0.00 | 0.00 | 0.00 | 3.18 |
1152 | 1187 | 9.354673 | AGTCCATTTGAAATCTCTAAAAAGACA | 57.645 | 29.630 | 0.00 | 0.00 | 0.00 | 3.41 |
1156 | 1191 | 9.581289 | TGGTAGTCCATTTGAAATCTCTAAAAA | 57.419 | 29.630 | 0.00 | 0.00 | 39.03 | 1.94 |
1157 | 1192 | 9.010029 | GTGGTAGTCCATTTGAAATCTCTAAAA | 57.990 | 33.333 | 0.00 | 0.00 | 46.20 | 1.52 |
1158 | 1193 | 8.160765 | TGTGGTAGTCCATTTGAAATCTCTAAA | 58.839 | 33.333 | 0.00 | 0.00 | 46.20 | 1.85 |
1159 | 1194 | 7.685481 | TGTGGTAGTCCATTTGAAATCTCTAA | 58.315 | 34.615 | 0.00 | 0.00 | 46.20 | 2.10 |
1160 | 1195 | 7.252612 | TGTGGTAGTCCATTTGAAATCTCTA | 57.747 | 36.000 | 0.00 | 0.00 | 46.20 | 2.43 |
1161 | 1196 | 6.126863 | TGTGGTAGTCCATTTGAAATCTCT | 57.873 | 37.500 | 0.00 | 0.00 | 46.20 | 3.10 |
1162 | 1197 | 7.254455 | CGTATGTGGTAGTCCATTTGAAATCTC | 60.254 | 40.741 | 0.00 | 0.00 | 46.20 | 2.75 |
1163 | 1198 | 6.538742 | CGTATGTGGTAGTCCATTTGAAATCT | 59.461 | 38.462 | 0.00 | 0.00 | 46.20 | 2.40 |
1164 | 1199 | 6.238374 | CCGTATGTGGTAGTCCATTTGAAATC | 60.238 | 42.308 | 0.00 | 0.00 | 46.20 | 2.17 |
1165 | 1200 | 5.588648 | CCGTATGTGGTAGTCCATTTGAAAT | 59.411 | 40.000 | 0.00 | 0.00 | 46.20 | 2.17 |
1166 | 1201 | 4.938832 | CCGTATGTGGTAGTCCATTTGAAA | 59.061 | 41.667 | 0.00 | 0.00 | 46.20 | 2.69 |
1167 | 1202 | 4.223255 | TCCGTATGTGGTAGTCCATTTGAA | 59.777 | 41.667 | 0.00 | 0.00 | 46.20 | 2.69 |
1168 | 1203 | 3.770388 | TCCGTATGTGGTAGTCCATTTGA | 59.230 | 43.478 | 0.00 | 0.00 | 46.20 | 2.69 |
1169 | 1204 | 4.131649 | TCCGTATGTGGTAGTCCATTTG | 57.868 | 45.455 | 0.00 | 0.00 | 46.20 | 2.32 |
1170 | 1205 | 4.163458 | ACATCCGTATGTGGTAGTCCATTT | 59.837 | 41.667 | 0.00 | 0.00 | 44.79 | 2.32 |
1171 | 1206 | 3.709653 | ACATCCGTATGTGGTAGTCCATT | 59.290 | 43.478 | 0.00 | 0.00 | 44.79 | 3.16 |
1172 | 1207 | 3.305720 | ACATCCGTATGTGGTAGTCCAT | 58.694 | 45.455 | 0.00 | 0.00 | 44.79 | 3.41 |
1173 | 1208 | 2.742348 | ACATCCGTATGTGGTAGTCCA | 58.258 | 47.619 | 0.00 | 0.00 | 44.79 | 4.02 |
1174 | 1209 | 6.770746 | ATATACATCCGTATGTGGTAGTCC | 57.229 | 41.667 | 3.56 | 0.00 | 45.99 | 3.85 |
1175 | 1210 | 8.610896 | GTCTATATACATCCGTATGTGGTAGTC | 58.389 | 40.741 | 3.56 | 0.00 | 45.99 | 2.59 |
1176 | 1211 | 8.105197 | TGTCTATATACATCCGTATGTGGTAGT | 58.895 | 37.037 | 3.56 | 0.00 | 45.99 | 2.73 |
1177 | 1212 | 8.502105 | TGTCTATATACATCCGTATGTGGTAG | 57.498 | 38.462 | 3.56 | 3.93 | 45.99 | 3.18 |
1179 | 1214 | 7.956328 | ATGTCTATATACATCCGTATGTGGT | 57.044 | 36.000 | 3.56 | 0.00 | 45.99 | 4.16 |
1212 | 1247 | 5.446473 | CGGAGCAAAATGAGTGAATCTACAC | 60.446 | 44.000 | 0.00 | 0.00 | 40.60 | 2.90 |
1213 | 1248 | 4.631377 | CGGAGCAAAATGAGTGAATCTACA | 59.369 | 41.667 | 0.00 | 0.00 | 0.00 | 2.74 |
1214 | 1249 | 4.631813 | ACGGAGCAAAATGAGTGAATCTAC | 59.368 | 41.667 | 0.00 | 0.00 | 0.00 | 2.59 |
1215 | 1250 | 4.832248 | ACGGAGCAAAATGAGTGAATCTA | 58.168 | 39.130 | 0.00 | 0.00 | 0.00 | 1.98 |
1216 | 1251 | 3.679389 | ACGGAGCAAAATGAGTGAATCT | 58.321 | 40.909 | 0.00 | 0.00 | 0.00 | 2.40 |
1217 | 1252 | 5.065218 | ACATACGGAGCAAAATGAGTGAATC | 59.935 | 40.000 | 0.00 | 0.00 | 0.00 | 2.52 |
1218 | 1253 | 4.943705 | ACATACGGAGCAAAATGAGTGAAT | 59.056 | 37.500 | 0.00 | 0.00 | 0.00 | 2.57 |
1219 | 1254 | 4.323417 | ACATACGGAGCAAAATGAGTGAA | 58.677 | 39.130 | 0.00 | 0.00 | 0.00 | 3.18 |
1220 | 1255 | 3.937814 | ACATACGGAGCAAAATGAGTGA | 58.062 | 40.909 | 0.00 | 0.00 | 0.00 | 3.41 |
1221 | 1256 | 4.870426 | ACTACATACGGAGCAAAATGAGTG | 59.130 | 41.667 | 0.00 | 0.00 | 0.00 | 3.51 |
1222 | 1257 | 5.086104 | ACTACATACGGAGCAAAATGAGT | 57.914 | 39.130 | 0.00 | 0.00 | 0.00 | 3.41 |
1223 | 1258 | 5.109210 | TGACTACATACGGAGCAAAATGAG | 58.891 | 41.667 | 0.00 | 0.00 | 0.00 | 2.90 |
1224 | 1259 | 5.079689 | TGACTACATACGGAGCAAAATGA | 57.920 | 39.130 | 0.00 | 0.00 | 0.00 | 2.57 |
1225 | 1260 | 5.991328 | ATGACTACATACGGAGCAAAATG | 57.009 | 39.130 | 0.00 | 0.00 | 34.71 | 2.32 |
1226 | 1261 | 6.374333 | ACAAATGACTACATACGGAGCAAAAT | 59.626 | 34.615 | 0.00 | 0.00 | 35.50 | 1.82 |
1227 | 1262 | 5.703592 | ACAAATGACTACATACGGAGCAAAA | 59.296 | 36.000 | 0.00 | 0.00 | 35.50 | 2.44 |
1228 | 1263 | 5.242434 | ACAAATGACTACATACGGAGCAAA | 58.758 | 37.500 | 0.00 | 0.00 | 35.50 | 3.68 |
1229 | 1264 | 4.827692 | ACAAATGACTACATACGGAGCAA | 58.172 | 39.130 | 0.00 | 0.00 | 35.50 | 3.91 |
1230 | 1265 | 4.465632 | ACAAATGACTACATACGGAGCA | 57.534 | 40.909 | 0.00 | 0.00 | 35.50 | 4.26 |
1231 | 1266 | 4.868171 | TCAACAAATGACTACATACGGAGC | 59.132 | 41.667 | 0.00 | 0.00 | 35.50 | 4.70 |
1232 | 1267 | 6.961359 | TTCAACAAATGACTACATACGGAG | 57.039 | 37.500 | 0.00 | 0.00 | 37.92 | 4.63 |
1233 | 1268 | 7.822334 | AGATTTCAACAAATGACTACATACGGA | 59.178 | 33.333 | 0.00 | 0.00 | 37.92 | 4.69 |
1234 | 1269 | 7.974675 | AGATTTCAACAAATGACTACATACGG | 58.025 | 34.615 | 0.00 | 0.00 | 37.92 | 4.02 |
1235 | 1270 | 8.873830 | AGAGATTTCAACAAATGACTACATACG | 58.126 | 33.333 | 0.00 | 0.00 | 37.92 | 3.06 |
1239 | 1274 | 9.996554 | TTCTAGAGATTTCAACAAATGACTACA | 57.003 | 29.630 | 0.00 | 0.00 | 37.92 | 2.74 |
1242 | 1277 | 9.784531 | TCTTTCTAGAGATTTCAACAAATGACT | 57.215 | 29.630 | 0.00 | 0.00 | 37.92 | 3.41 |
1243 | 1278 | 9.818796 | GTCTTTCTAGAGATTTCAACAAATGAC | 57.181 | 33.333 | 0.00 | 0.00 | 37.92 | 3.06 |
1244 | 1279 | 9.559732 | TGTCTTTCTAGAGATTTCAACAAATGA | 57.440 | 29.630 | 0.00 | 0.00 | 31.94 | 2.57 |
1259 | 1294 | 9.595823 | CCGTTCCTAAATATTTGTCTTTCTAGA | 57.404 | 33.333 | 11.05 | 0.00 | 0.00 | 2.43 |
1260 | 1295 | 9.595823 | TCCGTTCCTAAATATTTGTCTTTCTAG | 57.404 | 33.333 | 11.05 | 0.00 | 0.00 | 2.43 |
1261 | 1296 | 9.595823 | CTCCGTTCCTAAATATTTGTCTTTCTA | 57.404 | 33.333 | 11.05 | 0.00 | 0.00 | 2.10 |
1262 | 1297 | 7.553044 | CCTCCGTTCCTAAATATTTGTCTTTCT | 59.447 | 37.037 | 11.05 | 0.00 | 0.00 | 2.52 |
1263 | 1298 | 7.201705 | CCCTCCGTTCCTAAATATTTGTCTTTC | 60.202 | 40.741 | 11.05 | 0.00 | 0.00 | 2.62 |
1264 | 1299 | 6.602009 | CCCTCCGTTCCTAAATATTTGTCTTT | 59.398 | 38.462 | 11.05 | 0.00 | 0.00 | 2.52 |
1265 | 1300 | 6.069847 | TCCCTCCGTTCCTAAATATTTGTCTT | 60.070 | 38.462 | 11.05 | 0.00 | 0.00 | 3.01 |
1266 | 1301 | 5.427481 | TCCCTCCGTTCCTAAATATTTGTCT | 59.573 | 40.000 | 11.05 | 0.00 | 0.00 | 3.41 |
1267 | 1302 | 5.677567 | TCCCTCCGTTCCTAAATATTTGTC | 58.322 | 41.667 | 11.05 | 0.00 | 0.00 | 3.18 |
1268 | 1303 | 5.191124 | ACTCCCTCCGTTCCTAAATATTTGT | 59.809 | 40.000 | 11.05 | 0.00 | 0.00 | 2.83 |
1269 | 1304 | 5.681639 | ACTCCCTCCGTTCCTAAATATTTG | 58.318 | 41.667 | 11.05 | 1.40 | 0.00 | 2.32 |
1270 | 1305 | 5.970501 | ACTCCCTCCGTTCCTAAATATTT | 57.029 | 39.130 | 5.89 | 5.89 | 0.00 | 1.40 |
1271 | 1306 | 6.557633 | ACATACTCCCTCCGTTCCTAAATATT | 59.442 | 38.462 | 0.00 | 0.00 | 0.00 | 1.28 |
1272 | 1307 | 6.082707 | ACATACTCCCTCCGTTCCTAAATAT | 58.917 | 40.000 | 0.00 | 0.00 | 0.00 | 1.28 |
1273 | 1308 | 5.461327 | ACATACTCCCTCCGTTCCTAAATA | 58.539 | 41.667 | 0.00 | 0.00 | 0.00 | 1.40 |
1274 | 1309 | 4.296056 | ACATACTCCCTCCGTTCCTAAAT | 58.704 | 43.478 | 0.00 | 0.00 | 0.00 | 1.40 |
1275 | 1310 | 3.716431 | ACATACTCCCTCCGTTCCTAAA | 58.284 | 45.455 | 0.00 | 0.00 | 0.00 | 1.85 |
1276 | 1311 | 3.393426 | ACATACTCCCTCCGTTCCTAA | 57.607 | 47.619 | 0.00 | 0.00 | 0.00 | 2.69 |
1277 | 1312 | 3.393426 | AACATACTCCCTCCGTTCCTA | 57.607 | 47.619 | 0.00 | 0.00 | 0.00 | 2.94 |
1278 | 1313 | 2.249309 | AACATACTCCCTCCGTTCCT | 57.751 | 50.000 | 0.00 | 0.00 | 0.00 | 3.36 |
1279 | 1314 | 2.500504 | AGAAACATACTCCCTCCGTTCC | 59.499 | 50.000 | 0.00 | 0.00 | 0.00 | 3.62 |
1280 | 1315 | 3.056035 | ACAGAAACATACTCCCTCCGTTC | 60.056 | 47.826 | 0.00 | 0.00 | 0.00 | 3.95 |
1281 | 1316 | 2.904434 | ACAGAAACATACTCCCTCCGTT | 59.096 | 45.455 | 0.00 | 0.00 | 0.00 | 4.44 |
1282 | 1317 | 2.233922 | CACAGAAACATACTCCCTCCGT | 59.766 | 50.000 | 0.00 | 0.00 | 0.00 | 4.69 |
1283 | 1318 | 2.496070 | TCACAGAAACATACTCCCTCCG | 59.504 | 50.000 | 0.00 | 0.00 | 0.00 | 4.63 |
1284 | 1319 | 4.762289 | ATCACAGAAACATACTCCCTCC | 57.238 | 45.455 | 0.00 | 0.00 | 0.00 | 4.30 |
1285 | 1320 | 7.275920 | ACATAATCACAGAAACATACTCCCTC | 58.724 | 38.462 | 0.00 | 0.00 | 0.00 | 4.30 |
1286 | 1321 | 7.200434 | ACATAATCACAGAAACATACTCCCT | 57.800 | 36.000 | 0.00 | 0.00 | 0.00 | 4.20 |
1287 | 1322 | 9.561069 | AATACATAATCACAGAAACATACTCCC | 57.439 | 33.333 | 0.00 | 0.00 | 0.00 | 4.30 |
1332 | 1367 | 3.582164 | ACAAATGGCTAGGTGGGAAAAA | 58.418 | 40.909 | 0.00 | 0.00 | 0.00 | 1.94 |
1363 | 1398 | 7.175990 | GGTAGAAAGTATTGGTGGACAAAATGA | 59.824 | 37.037 | 0.00 | 0.00 | 43.46 | 2.57 |
1429 | 1464 | 4.338379 | ACTTAGGAACGAAAGAAGCACT | 57.662 | 40.909 | 0.00 | 0.00 | 32.06 | 4.40 |
1435 | 1470 | 8.080417 | CCGATGAATATACTTAGGAACGAAAGA | 58.920 | 37.037 | 0.00 | 0.00 | 32.06 | 2.52 |
1472 | 1507 | 4.216472 | GGCCTTCTTTTTCTTCGACTTCAT | 59.784 | 41.667 | 0.00 | 0.00 | 0.00 | 2.57 |
1495 | 1530 | 1.141591 | GCCGCCAAATCAATCAAGCG | 61.142 | 55.000 | 0.00 | 0.00 | 42.99 | 4.68 |
1503 | 1538 | 4.440829 | GGGGGAGCCGCCAAATCA | 62.441 | 66.667 | 16.91 | 0.00 | 46.73 | 2.57 |
1575 | 1613 | 7.392673 | ACAAGTGAGCTCAATGAAATACAATCT | 59.607 | 33.333 | 28.26 | 11.97 | 0.00 | 2.40 |
1593 | 1631 | 5.486526 | AGAAAGCCTTAGATCACAAGTGAG | 58.513 | 41.667 | 8.99 | 0.00 | 43.61 | 3.51 |
1621 | 1664 | 2.731027 | GCAAATACCCGCTTGTAAGTGC | 60.731 | 50.000 | 0.00 | 5.58 | 35.25 | 4.40 |
1628 | 1671 | 0.239879 | AACACGCAAATACCCGCTTG | 59.760 | 50.000 | 0.00 | 0.00 | 33.90 | 4.01 |
1629 | 1672 | 0.239879 | CAACACGCAAATACCCGCTT | 59.760 | 50.000 | 0.00 | 0.00 | 0.00 | 4.68 |
1630 | 1673 | 1.582610 | CCAACACGCAAATACCCGCT | 61.583 | 55.000 | 0.00 | 0.00 | 0.00 | 5.52 |
1631 | 1674 | 1.154112 | CCAACACGCAAATACCCGC | 60.154 | 57.895 | 0.00 | 0.00 | 0.00 | 6.13 |
1632 | 1675 | 1.440708 | TACCAACACGCAAATACCCG | 58.559 | 50.000 | 0.00 | 0.00 | 0.00 | 5.28 |
1636 | 1694 | 7.853437 | CGATCAATAATTACCAACACGCAAATA | 59.147 | 33.333 | 0.00 | 0.00 | 0.00 | 1.40 |
1652 | 1713 | 9.467258 | CCAATGTTTATTCTTGCGATCAATAAT | 57.533 | 29.630 | 0.00 | 0.00 | 34.62 | 1.28 |
1657 | 1718 | 5.414144 | TGACCAATGTTTATTCTTGCGATCA | 59.586 | 36.000 | 0.00 | 0.00 | 0.00 | 2.92 |
1720 | 1799 | 5.050490 | GTGCCGACTACATTGATCTAACAT | 58.950 | 41.667 | 0.00 | 0.00 | 0.00 | 2.71 |
1725 | 1804 | 2.760650 | TGAGTGCCGACTACATTGATCT | 59.239 | 45.455 | 0.00 | 0.00 | 30.16 | 2.75 |
1778 | 1857 | 7.386059 | TGTTTAGAGTCAGAAGCATTATGTCA | 58.614 | 34.615 | 0.00 | 0.00 | 38.69 | 3.58 |
1779 | 1858 | 7.834068 | TGTTTAGAGTCAGAAGCATTATGTC | 57.166 | 36.000 | 0.00 | 0.00 | 38.69 | 3.06 |
1780 | 1859 | 8.798859 | AATGTTTAGAGTCAGAAGCATTATGT | 57.201 | 30.769 | 14.26 | 0.00 | 38.69 | 2.29 |
1784 | 1863 | 8.401490 | AGAAAATGTTTAGAGTCAGAAGCATT | 57.599 | 30.769 | 11.59 | 11.59 | 37.88 | 3.56 |
1785 | 1864 | 7.120432 | GGAGAAAATGTTTAGAGTCAGAAGCAT | 59.880 | 37.037 | 0.00 | 0.00 | 0.00 | 3.79 |
1786 | 1865 | 6.428159 | GGAGAAAATGTTTAGAGTCAGAAGCA | 59.572 | 38.462 | 0.00 | 0.00 | 0.00 | 3.91 |
1787 | 1866 | 6.428159 | TGGAGAAAATGTTTAGAGTCAGAAGC | 59.572 | 38.462 | 0.00 | 0.00 | 0.00 | 3.86 |
1788 | 1867 | 7.969536 | TGGAGAAAATGTTTAGAGTCAGAAG | 57.030 | 36.000 | 0.00 | 0.00 | 0.00 | 2.85 |
1809 | 4475 | 4.278170 | ACTTCATTTCAGCGAAAACATGGA | 59.722 | 37.500 | 0.00 | 0.00 | 35.11 | 3.41 |
1820 | 4486 | 4.970662 | TGCCAATCTACTTCATTTCAGC | 57.029 | 40.909 | 0.00 | 0.00 | 0.00 | 4.26 |
1839 | 4505 | 7.271438 | GTCTAATTTTGTTTTCTCGAGGAATGC | 59.729 | 37.037 | 13.56 | 7.07 | 33.53 | 3.56 |
1847 | 4513 | 6.067263 | TGGTGGTCTAATTTTGTTTTCTCG | 57.933 | 37.500 | 0.00 | 0.00 | 0.00 | 4.04 |
1974 | 4650 | 8.643752 | CGCCATAATTTTTATTTGAGAACGTTT | 58.356 | 29.630 | 0.46 | 0.00 | 0.00 | 3.60 |
2001 | 4681 | 6.595326 | CCTTGCATATGACTTCTTGTTAGTGA | 59.405 | 38.462 | 6.97 | 0.00 | 0.00 | 3.41 |
2009 | 4689 | 5.435686 | TGTACCCTTGCATATGACTTCTT | 57.564 | 39.130 | 6.97 | 0.00 | 0.00 | 2.52 |
2011 | 4691 | 6.699575 | ATTTGTACCCTTGCATATGACTTC | 57.300 | 37.500 | 6.97 | 0.00 | 0.00 | 3.01 |
2023 | 4703 | 8.889717 | CGTGAAGATATAACAATTTGTACCCTT | 58.110 | 33.333 | 1.76 | 3.03 | 0.00 | 3.95 |
2047 | 4727 | 8.836268 | TGTGGTATTTTTCTAGTGATTAACGT | 57.164 | 30.769 | 0.00 | 0.00 | 0.00 | 3.99 |
2114 | 4805 | 6.092259 | AGTCCGTGCAAATAGTTCTAATTCAC | 59.908 | 38.462 | 0.00 | 0.00 | 0.00 | 3.18 |
2249 | 4940 | 6.769822 | CAGTGGATGTAATGGAAGAGCTAATT | 59.230 | 38.462 | 0.00 | 0.00 | 0.00 | 1.40 |
2275 | 4966 | 6.073765 | CGATAACTTAATGGATGGAAGGTTCG | 60.074 | 42.308 | 0.00 | 0.00 | 0.00 | 3.95 |
2391 | 5086 | 8.620177 | CCCTTTCCCCATATATATAAAAGTGGA | 58.380 | 37.037 | 10.49 | 4.48 | 0.00 | 4.02 |
2395 | 5090 | 9.255029 | CAACCCCTTTCCCCATATATATAAAAG | 57.745 | 37.037 | 0.00 | 2.36 | 0.00 | 2.27 |
2418 | 5113 | 7.351981 | GCAACAATTAAGGTTTGATTTCCAAC | 58.648 | 34.615 | 0.00 | 0.00 | 33.85 | 3.77 |
Based at the University of Bristol with support from BBSRC.
AutoCloner maintained by Alex Coulton.