Multiple sequence alignment - TraesCS4B01G074700

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G074700 chr4B 100.000 5661 0 0 1 5661 70549682 70555342 0.000000e+00 10455.0
1 TraesCS4B01G074700 chr4B 88.235 1003 83 15 4689 5661 70560378 70561375 0.000000e+00 1166.0
2 TraesCS4B01G074700 chr4B 91.535 508 36 6 1979 2483 310972664 310973167 0.000000e+00 693.0
3 TraesCS4B01G074700 chr4B 79.167 336 49 10 1 334 119259369 119259685 4.440000e-51 213.0
4 TraesCS4B01G074700 chr4B 84.940 166 17 8 5499 5661 17453190 17453350 1.630000e-35 161.0
5 TraesCS4B01G074700 chr4A 89.508 3336 182 53 406 3658 549821455 549818205 0.000000e+00 4067.0
6 TraesCS4B01G074700 chr4A 87.428 1726 134 35 3918 5566 549817495 549815776 0.000000e+00 1908.0
7 TraesCS4B01G074700 chr4D 94.526 1644 72 11 991 2628 47894532 47896163 0.000000e+00 2521.0
8 TraesCS4B01G074700 chr4D 92.466 969 59 9 3896 4861 47897956 47898913 0.000000e+00 1373.0
9 TraesCS4B01G074700 chr4D 89.313 786 52 17 2903 3668 47896346 47897119 0.000000e+00 957.0
10 TraesCS4B01G074700 chr4D 85.949 548 48 11 5129 5661 47905330 47905863 4.950000e-155 558.0
11 TraesCS4B01G074700 chr4D 85.846 325 15 18 650 959 47894157 47894465 3.290000e-82 316.0
12 TraesCS4B01G074700 chr4D 84.615 143 19 2 400 541 47893865 47894005 7.650000e-29 139.0
13 TraesCS4B01G074700 chr3A 88.860 1140 95 17 1481 2612 497760058 497761173 0.000000e+00 1373.0
14 TraesCS4B01G074700 chr3A 96.774 62 1 1 1364 1425 497760014 497760074 1.000000e-17 102.0
15 TraesCS4B01G074700 chr5A 91.471 809 60 3 1481 2283 55267275 55266470 0.000000e+00 1103.0
16 TraesCS4B01G074700 chr5A 94.444 72 4 0 1364 1435 55267320 55267249 1.670000e-20 111.0
17 TraesCS4B01G074700 chr5A 89.362 47 5 0 4312 4358 540054132 540054178 6.130000e-05 60.2
18 TraesCS4B01G074700 chr2A 91.471 809 60 4 1481 2283 469818896 469818091 0.000000e+00 1103.0
19 TraesCS4B01G074700 chr2A 86.957 345 43 2 2217 2560 694444551 694444894 2.470000e-103 387.0
20 TraesCS4B01G074700 chr2A 78.313 332 49 13 19 343 667940410 667940725 5.790000e-45 193.0
21 TraesCS4B01G074700 chr2A 94.444 72 4 0 1364 1435 469818941 469818870 1.670000e-20 111.0
22 TraesCS4B01G074700 chr6B 91.347 809 61 4 1481 2283 650651105 650650300 0.000000e+00 1098.0
23 TraesCS4B01G074700 chr6B 94.444 72 4 0 1364 1435 650651150 650651079 1.670000e-20 111.0
24 TraesCS4B01G074700 chr6B 83.333 84 14 0 5372 5455 703444571 703444654 1.690000e-10 78.7
25 TraesCS4B01G074700 chr3D 92.958 639 36 5 1979 2612 32388308 32387674 0.000000e+00 922.0
26 TraesCS4B01G074700 chr5B 91.824 636 43 5 1979 2609 663519448 663520079 0.000000e+00 878.0
27 TraesCS4B01G074700 chr5B 91.489 47 4 0 4312 4358 515186245 515186291 1.320000e-06 65.8
28 TraesCS4B01G074700 chr6A 91.190 647 34 8 1979 2612 66268799 66269435 0.000000e+00 857.0
29 TraesCS4B01G074700 chr2D 87.246 345 42 2 2217 2560 553992228 553992571 5.320000e-105 392.0
30 TraesCS4B01G074700 chr1D 77.949 390 70 12 8 388 334051484 334051866 4.410000e-56 230.0
31 TraesCS4B01G074700 chr5D 78.806 335 54 15 7 334 88339731 88339407 5.750000e-50 209.0
32 TraesCS4B01G074700 chr5D 85.526 76 9 2 5374 5448 1796677 1796751 1.690000e-10 78.7
33 TraesCS4B01G074700 chr5D 89.362 47 5 0 4312 4358 425841074 425841120 6.130000e-05 60.2
34 TraesCS4B01G074700 chr7D 86.740 181 21 3 5483 5661 24062797 24062618 1.240000e-46 198.0
35 TraesCS4B01G074700 chr7D 86.188 181 22 3 5483 5661 24046002 24045823 5.790000e-45 193.0
36 TraesCS4B01G074700 chr1A 81.395 86 15 1 5372 5456 497492632 497492547 1.020000e-07 69.4
37 TraesCS4B01G074700 chr6D 96.970 33 1 0 4313 4345 411221476 411221444 7.920000e-04 56.5
38 TraesCS4B01G074700 chr1B 92.308 39 3 0 5372 5410 150775966 150775928 7.920000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G074700 chr4B 70549682 70555342 5660 False 10455.0 10455 100.0000 1 5661 1 chr4B.!!$F2 5660
1 TraesCS4B01G074700 chr4B 70560378 70561375 997 False 1166.0 1166 88.2350 4689 5661 1 chr4B.!!$F3 972
2 TraesCS4B01G074700 chr4B 310972664 310973167 503 False 693.0 693 91.5350 1979 2483 1 chr4B.!!$F5 504
3 TraesCS4B01G074700 chr4A 549815776 549821455 5679 True 2987.5 4067 88.4680 406 5566 2 chr4A.!!$R1 5160
4 TraesCS4B01G074700 chr4D 47893865 47898913 5048 False 1061.2 2521 89.3532 400 4861 5 chr4D.!!$F2 4461
5 TraesCS4B01G074700 chr4D 47905330 47905863 533 False 558.0 558 85.9490 5129 5661 1 chr4D.!!$F1 532
6 TraesCS4B01G074700 chr3A 497760014 497761173 1159 False 737.5 1373 92.8170 1364 2612 2 chr3A.!!$F1 1248
7 TraesCS4B01G074700 chr5A 55266470 55267320 850 True 607.0 1103 92.9575 1364 2283 2 chr5A.!!$R1 919
8 TraesCS4B01G074700 chr2A 469818091 469818941 850 True 607.0 1103 92.9575 1364 2283 2 chr2A.!!$R1 919
9 TraesCS4B01G074700 chr6B 650650300 650651150 850 True 604.5 1098 92.8955 1364 2283 2 chr6B.!!$R1 919
10 TraesCS4B01G074700 chr3D 32387674 32388308 634 True 922.0 922 92.9580 1979 2612 1 chr3D.!!$R1 633
11 TraesCS4B01G074700 chr5B 663519448 663520079 631 False 878.0 878 91.8240 1979 2609 1 chr5B.!!$F2 630
12 TraesCS4B01G074700 chr6A 66268799 66269435 636 False 857.0 857 91.1900 1979 2612 1 chr6A.!!$F1 633

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
96 97 0.105913 GAGGAGGAGGACACCTAGGG 60.106 65.000 14.81 4.64 40.73 3.53 F
667 731 0.300193 GAAGCTTTGCTCGATCGCTC 59.700 55.000 11.09 4.82 38.25 5.03 F
826 908 0.321830 GCATGCAATTTGGCCCAGTT 60.322 50.000 14.21 0.00 0.00 3.16 F
1477 1607 1.203075 ACCTCGACCTCTCCAAGAACT 60.203 52.381 0.00 0.00 0.00 3.01 F
2658 2834 1.059913 CCACCCTCCAGTGACTCTTT 58.940 55.000 0.00 0.00 40.34 2.52 F
2916 3098 0.171007 ATTTGTTGGATTGCGGCTCG 59.829 50.000 0.00 0.00 0.00 5.03 F
3979 4858 0.108520 CGTTGGTATGTACAGGGCGT 60.109 55.000 0.33 0.00 0.00 5.68 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1762 1892 0.035458 CCGGAGAGGTTGTTGAAGCT 59.965 55.0 0.00 0.00 42.73 3.74 R
1957 2093 0.179062 ATGAGGCTGGTCTTCATCGC 60.179 55.0 0.00 0.00 0.00 4.58 R
1977 2113 0.244721 CGGTGACTGAGATGAGCACA 59.755 55.0 0.00 0.00 0.00 4.57 R
2916 3098 0.388520 GCATTTTCCTTCCCGTGCAC 60.389 55.0 6.82 6.82 33.09 4.57 R
3946 4825 0.165944 CCAACGCCACGTCAGAAATC 59.834 55.0 0.00 0.00 39.99 2.17 R
4443 5325 0.392729 GATCTCTGGTGCTTGCTGCT 60.393 55.0 0.00 0.00 43.37 4.24 R
4976 5888 0.239879 TTTCGGTGCGAGAATTTGGC 59.760 50.0 0.00 0.00 37.14 4.52 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 3.298958 TCGCAGTAGCTTGGGAGG 58.701 61.111 0.00 0.00 39.10 4.30
18 19 2.512515 CGCAGTAGCTTGGGAGGC 60.513 66.667 0.00 0.00 39.10 4.70
19 20 2.512515 GCAGTAGCTTGGGAGGCG 60.513 66.667 0.00 0.00 37.91 5.52
20 21 2.187946 CAGTAGCTTGGGAGGCGG 59.812 66.667 0.00 0.00 34.52 6.13
21 22 3.787001 AGTAGCTTGGGAGGCGGC 61.787 66.667 0.00 0.00 34.52 6.53
63 64 2.792599 GACGCTCGTCGACCTCAT 59.207 61.111 10.58 0.00 41.67 2.90
64 65 1.297745 GACGCTCGTCGACCTCATC 60.298 63.158 10.58 0.00 41.67 2.92
85 86 2.125229 TCCGACGACGAGGAGGAG 60.125 66.667 9.28 0.00 42.66 3.69
86 87 3.203412 CCGACGACGAGGAGGAGG 61.203 72.222 9.28 0.00 42.66 4.30
87 88 2.125229 CGACGACGAGGAGGAGGA 60.125 66.667 0.00 0.00 42.66 3.71
88 89 2.462782 CGACGACGAGGAGGAGGAC 61.463 68.421 0.00 0.00 42.66 3.85
89 90 1.376942 GACGACGAGGAGGAGGACA 60.377 63.158 0.00 0.00 0.00 4.02
90 91 1.646624 GACGACGAGGAGGAGGACAC 61.647 65.000 0.00 0.00 0.00 3.67
91 92 2.408241 CGACGAGGAGGAGGACACC 61.408 68.421 0.00 0.00 0.00 4.16
92 93 1.000646 GACGAGGAGGAGGACACCT 60.001 63.158 0.00 0.00 43.64 4.00
93 94 0.255318 GACGAGGAGGAGGACACCTA 59.745 60.000 0.00 0.00 40.73 3.08
94 95 0.256464 ACGAGGAGGAGGACACCTAG 59.744 60.000 0.00 0.00 40.73 3.02
95 96 0.466555 CGAGGAGGAGGACACCTAGG 60.467 65.000 7.41 7.41 40.73 3.02
96 97 0.105913 GAGGAGGAGGACACCTAGGG 60.106 65.000 14.81 4.64 40.73 3.53
97 98 1.762858 GGAGGAGGACACCTAGGGC 60.763 68.421 14.81 1.62 40.73 5.19
98 99 1.001760 GAGGAGGACACCTAGGGCA 59.998 63.158 14.81 0.00 40.73 5.36
99 100 1.002274 AGGAGGACACCTAGGGCAG 59.998 63.158 14.81 5.12 38.65 4.85
100 101 1.306226 GGAGGACACCTAGGGCAGT 60.306 63.158 14.81 8.65 31.76 4.40
101 102 1.617947 GGAGGACACCTAGGGCAGTG 61.618 65.000 14.81 4.51 39.93 3.66
102 103 2.245438 GAGGACACCTAGGGCAGTGC 62.245 65.000 14.81 13.53 37.51 4.40
103 104 2.125512 GACACCTAGGGCAGTGCG 60.126 66.667 14.81 0.00 37.51 5.34
104 105 4.394712 ACACCTAGGGCAGTGCGC 62.395 66.667 23.64 23.64 41.91 6.09
113 114 2.266055 GCAGTGCGCCTCCTAGTT 59.734 61.111 4.18 0.00 32.94 2.24
114 115 1.376037 GCAGTGCGCCTCCTAGTTT 60.376 57.895 4.18 0.00 32.94 2.66
115 116 0.955919 GCAGTGCGCCTCCTAGTTTT 60.956 55.000 4.18 0.00 32.94 2.43
116 117 1.674817 GCAGTGCGCCTCCTAGTTTTA 60.675 52.381 4.18 0.00 32.94 1.52
117 118 2.695359 CAGTGCGCCTCCTAGTTTTAA 58.305 47.619 4.18 0.00 0.00 1.52
118 119 2.673368 CAGTGCGCCTCCTAGTTTTAAG 59.327 50.000 4.18 0.00 0.00 1.85
119 120 2.302157 AGTGCGCCTCCTAGTTTTAAGT 59.698 45.455 4.18 0.00 0.00 2.24
120 121 3.072211 GTGCGCCTCCTAGTTTTAAGTT 58.928 45.455 4.18 0.00 0.00 2.66
121 122 3.501062 GTGCGCCTCCTAGTTTTAAGTTT 59.499 43.478 4.18 0.00 0.00 2.66
122 123 4.692155 GTGCGCCTCCTAGTTTTAAGTTTA 59.308 41.667 4.18 0.00 0.00 2.01
123 124 5.179929 GTGCGCCTCCTAGTTTTAAGTTTAA 59.820 40.000 4.18 0.00 0.00 1.52
124 125 5.941647 TGCGCCTCCTAGTTTTAAGTTTAAT 59.058 36.000 4.18 0.00 0.00 1.40
125 126 6.431852 TGCGCCTCCTAGTTTTAAGTTTAATT 59.568 34.615 4.18 0.00 0.00 1.40
126 127 7.607223 TGCGCCTCCTAGTTTTAAGTTTAATTA 59.393 33.333 4.18 0.00 0.00 1.40
127 128 8.453320 GCGCCTCCTAGTTTTAAGTTTAATTAA 58.547 33.333 0.00 0.00 0.00 1.40
159 160 9.661563 TTTATACCTAAGTAATGTGGACTTGTG 57.338 33.333 0.00 0.00 37.68 3.33
160 161 4.906618 ACCTAAGTAATGTGGACTTGTGG 58.093 43.478 0.00 3.81 37.68 4.17
161 162 4.595781 ACCTAAGTAATGTGGACTTGTGGA 59.404 41.667 12.92 0.00 37.68 4.02
162 163 4.935808 CCTAAGTAATGTGGACTTGTGGAC 59.064 45.833 0.00 0.00 37.68 4.02
163 164 4.706842 AAGTAATGTGGACTTGTGGACT 57.293 40.909 0.00 0.00 35.80 3.85
164 165 4.273148 AGTAATGTGGACTTGTGGACTC 57.727 45.455 0.00 0.00 0.00 3.36
165 166 3.904339 AGTAATGTGGACTTGTGGACTCT 59.096 43.478 0.00 0.00 0.00 3.24
166 167 3.409026 AATGTGGACTTGTGGACTCTC 57.591 47.619 0.00 0.00 0.00 3.20
167 168 0.673985 TGTGGACTTGTGGACTCTCG 59.326 55.000 0.00 0.00 0.00 4.04
168 169 0.667792 GTGGACTTGTGGACTCTCGC 60.668 60.000 0.00 0.00 0.00 5.03
169 170 1.079750 GGACTTGTGGACTCTCGCC 60.080 63.158 0.00 0.00 0.00 5.54
170 171 1.444553 GACTTGTGGACTCTCGCCG 60.445 63.158 0.00 0.00 0.00 6.46
171 172 2.125912 CTTGTGGACTCTCGCCGG 60.126 66.667 0.00 0.00 0.00 6.13
172 173 4.373116 TTGTGGACTCTCGCCGGC 62.373 66.667 19.07 19.07 0.00 6.13
174 175 4.148825 GTGGACTCTCGCCGGCAT 62.149 66.667 28.98 5.43 0.00 4.40
175 176 3.390521 TGGACTCTCGCCGGCATT 61.391 61.111 28.98 4.35 0.00 3.56
176 177 2.892425 GGACTCTCGCCGGCATTG 60.892 66.667 28.98 15.55 0.00 2.82
177 178 2.125512 GACTCTCGCCGGCATTGT 60.126 61.111 28.98 18.63 0.00 2.71
178 179 2.434884 ACTCTCGCCGGCATTGTG 60.435 61.111 28.98 17.53 0.00 3.33
179 180 3.197790 CTCTCGCCGGCATTGTGG 61.198 66.667 28.98 9.08 0.00 4.17
187 188 3.287445 GGCATTGTGGCCGACATT 58.713 55.556 8.55 3.55 45.40 2.71
188 189 2.487918 GGCATTGTGGCCGACATTA 58.512 52.632 8.55 0.00 45.40 1.90
189 190 0.814457 GGCATTGTGGCCGACATTAA 59.186 50.000 8.55 0.00 45.40 1.40
190 191 1.408702 GGCATTGTGGCCGACATTAAT 59.591 47.619 8.55 0.00 45.40 1.40
191 192 2.462889 GCATTGTGGCCGACATTAATG 58.537 47.619 14.01 14.01 38.48 1.90
192 193 2.159254 GCATTGTGGCCGACATTAATGT 60.159 45.455 20.93 20.93 45.16 2.71
193 194 3.675775 GCATTGTGGCCGACATTAATGTT 60.676 43.478 21.63 6.41 41.95 2.71
194 195 4.493547 CATTGTGGCCGACATTAATGTTT 58.506 39.130 21.63 0.02 41.95 2.83
195 196 5.645624 CATTGTGGCCGACATTAATGTTTA 58.354 37.500 21.63 5.09 41.95 2.01
196 197 5.707242 TTGTGGCCGACATTAATGTTTAA 57.293 34.783 21.63 7.50 41.95 1.52
197 198 5.906113 TGTGGCCGACATTAATGTTTAAT 57.094 34.783 21.63 0.00 41.95 1.40
198 199 7.392494 TTGTGGCCGACATTAATGTTTAATA 57.608 32.000 21.63 7.04 41.95 0.98
199 200 7.392494 TGTGGCCGACATTAATGTTTAATAA 57.608 32.000 21.63 4.91 41.95 1.40
200 201 7.827701 TGTGGCCGACATTAATGTTTAATAAA 58.172 30.769 21.63 4.72 41.95 1.40
201 202 8.470805 TGTGGCCGACATTAATGTTTAATAAAT 58.529 29.630 21.63 0.00 41.95 1.40
202 203 9.953697 GTGGCCGACATTAATGTTTAATAAATA 57.046 29.630 21.63 1.60 41.95 1.40
259 260 2.673775 TGAGCCACCTCAAAAATGGA 57.326 45.000 0.00 0.00 44.79 3.41
260 261 3.173953 TGAGCCACCTCAAAAATGGAT 57.826 42.857 0.00 0.00 44.79 3.41
261 262 3.091545 TGAGCCACCTCAAAAATGGATC 58.908 45.455 0.85 0.85 46.82 3.36
262 263 3.091545 GAGCCACCTCAAAAATGGATCA 58.908 45.455 2.99 0.00 46.09 2.92
263 264 3.094572 AGCCACCTCAAAAATGGATCAG 58.905 45.455 0.00 0.00 35.33 2.90
264 265 2.167075 GCCACCTCAAAAATGGATCAGG 59.833 50.000 0.00 0.00 35.33 3.86
265 266 2.167075 CCACCTCAAAAATGGATCAGGC 59.833 50.000 0.00 0.00 35.33 4.85
266 267 2.167075 CACCTCAAAAATGGATCAGGCC 59.833 50.000 0.00 0.00 0.00 5.19
267 268 2.225343 ACCTCAAAAATGGATCAGGCCA 60.225 45.455 5.01 0.00 43.23 5.36
268 269 2.833338 CCTCAAAAATGGATCAGGCCAA 59.167 45.455 5.01 0.00 42.16 4.52
269 270 3.368739 CCTCAAAAATGGATCAGGCCAAC 60.369 47.826 5.01 0.00 42.16 3.77
270 271 2.230992 TCAAAAATGGATCAGGCCAACG 59.769 45.455 5.01 0.00 42.16 4.10
271 272 1.923356 AAAATGGATCAGGCCAACGT 58.077 45.000 5.01 0.00 42.16 3.99
272 273 1.923356 AAATGGATCAGGCCAACGTT 58.077 45.000 5.01 0.00 42.16 3.99
273 274 1.176527 AATGGATCAGGCCAACGTTG 58.823 50.000 21.47 21.47 42.16 4.10
283 284 4.135570 CAACGTTGGATGCAAGCG 57.864 55.556 20.71 16.09 0.00 4.68
284 285 2.082366 CAACGTTGGATGCAAGCGC 61.082 57.895 20.71 0.00 39.24 5.92
285 286 3.267597 AACGTTGGATGCAAGCGCC 62.268 57.895 17.09 0.00 37.32 6.53
286 287 4.817063 CGTTGGATGCAAGCGCCG 62.817 66.667 2.29 0.00 37.32 6.46
287 288 3.430862 GTTGGATGCAAGCGCCGA 61.431 61.111 2.29 0.00 37.32 5.54
288 289 3.430862 TTGGATGCAAGCGCCGAC 61.431 61.111 2.29 0.00 37.32 4.79
294 295 4.700365 GCAAGCGCCGACCCAAAC 62.700 66.667 2.29 0.00 0.00 2.93
295 296 4.383602 CAAGCGCCGACCCAAACG 62.384 66.667 2.29 0.00 0.00 3.60
300 301 3.652000 GCCGACCCAAACGCGAAA 61.652 61.111 15.93 0.00 0.00 3.46
301 302 2.554272 CCGACCCAAACGCGAAAG 59.446 61.111 15.93 0.46 0.00 2.62
313 314 3.985877 CGAAAGCAGACATGGGCA 58.014 55.556 0.00 0.00 0.00 5.36
314 315 2.485677 CGAAAGCAGACATGGGCAT 58.514 52.632 0.00 0.00 0.00 4.40
315 316 0.379669 CGAAAGCAGACATGGGCATC 59.620 55.000 0.00 0.54 0.00 3.91
316 317 0.743097 GAAAGCAGACATGGGCATCC 59.257 55.000 0.00 0.00 0.00 3.51
317 318 1.033746 AAAGCAGACATGGGCATCCG 61.034 55.000 0.00 0.00 35.24 4.18
318 319 3.589881 GCAGACATGGGCATCCGC 61.590 66.667 0.00 0.00 35.24 5.54
319 320 2.191375 CAGACATGGGCATCCGCT 59.809 61.111 0.00 0.00 38.60 5.52
320 321 2.184830 CAGACATGGGCATCCGCTG 61.185 63.158 0.00 0.00 38.60 5.18
321 322 2.190313 GACATGGGCATCCGCTGA 59.810 61.111 0.00 0.00 38.60 4.26
322 323 1.451927 GACATGGGCATCCGCTGAA 60.452 57.895 0.00 0.00 38.60 3.02
323 324 1.718757 GACATGGGCATCCGCTGAAC 61.719 60.000 0.00 0.00 38.60 3.18
324 325 2.124151 ATGGGCATCCGCTGAACC 60.124 61.111 0.00 0.00 38.60 3.62
325 326 4.776322 TGGGCATCCGCTGAACCG 62.776 66.667 0.00 0.00 38.60 4.44
326 327 4.467084 GGGCATCCGCTGAACCGA 62.467 66.667 0.00 0.00 38.60 4.69
327 328 3.195698 GGCATCCGCTGAACCGAC 61.196 66.667 0.00 0.00 38.60 4.79
328 329 3.195698 GCATCCGCTGAACCGACC 61.196 66.667 0.00 0.00 34.30 4.79
329 330 2.511600 CATCCGCTGAACCGACCC 60.512 66.667 0.00 0.00 0.00 4.46
330 331 3.000819 ATCCGCTGAACCGACCCA 61.001 61.111 0.00 0.00 0.00 4.51
331 332 2.589157 ATCCGCTGAACCGACCCAA 61.589 57.895 0.00 0.00 0.00 4.12
332 333 2.119484 ATCCGCTGAACCGACCCAAA 62.119 55.000 0.00 0.00 0.00 3.28
333 334 2.613506 CCGCTGAACCGACCCAAAC 61.614 63.158 0.00 0.00 0.00 2.93
334 335 2.613506 CGCTGAACCGACCCAAACC 61.614 63.158 0.00 0.00 0.00 3.27
335 336 1.527380 GCTGAACCGACCCAAACCA 60.527 57.895 0.00 0.00 0.00 3.67
336 337 1.104577 GCTGAACCGACCCAAACCAA 61.105 55.000 0.00 0.00 0.00 3.67
337 338 1.394618 CTGAACCGACCCAAACCAAA 58.605 50.000 0.00 0.00 0.00 3.28
338 339 1.751924 CTGAACCGACCCAAACCAAAA 59.248 47.619 0.00 0.00 0.00 2.44
339 340 2.166664 CTGAACCGACCCAAACCAAAAA 59.833 45.455 0.00 0.00 0.00 1.94
363 364 6.894339 AATATGGACAAAATCGGGTTATCC 57.106 37.500 0.00 0.00 0.00 2.59
373 374 3.961582 GGGTTATCCGTTTGGGTCA 57.038 52.632 0.00 0.00 37.00 4.02
374 375 1.746470 GGGTTATCCGTTTGGGTCAG 58.254 55.000 0.00 0.00 37.00 3.51
375 376 1.092348 GGTTATCCGTTTGGGTCAGC 58.908 55.000 0.00 0.00 37.00 4.26
376 377 0.725117 GTTATCCGTTTGGGTCAGCG 59.275 55.000 0.00 0.00 37.00 5.18
377 378 0.322322 TTATCCGTTTGGGTCAGCGT 59.678 50.000 0.00 0.00 37.00 5.07
378 379 0.390603 TATCCGTTTGGGTCAGCGTG 60.391 55.000 0.00 0.00 37.00 5.34
379 380 2.391724 ATCCGTTTGGGTCAGCGTGT 62.392 55.000 0.00 0.00 37.00 4.49
380 381 2.184167 CCGTTTGGGTCAGCGTGTT 61.184 57.895 0.00 0.00 0.00 3.32
381 382 1.010125 CGTTTGGGTCAGCGTGTTG 60.010 57.895 0.00 0.00 0.00 3.33
382 383 1.358759 GTTTGGGTCAGCGTGTTGG 59.641 57.895 0.00 0.00 0.00 3.77
383 384 1.098712 GTTTGGGTCAGCGTGTTGGA 61.099 55.000 0.00 0.00 0.00 3.53
384 385 0.817634 TTTGGGTCAGCGTGTTGGAG 60.818 55.000 0.00 0.00 0.00 3.86
385 386 1.978455 TTGGGTCAGCGTGTTGGAGT 61.978 55.000 0.00 0.00 0.00 3.85
386 387 1.227853 GGGTCAGCGTGTTGGAGTT 60.228 57.895 0.00 0.00 0.00 3.01
387 388 1.507141 GGGTCAGCGTGTTGGAGTTG 61.507 60.000 0.00 0.00 0.00 3.16
388 389 0.814010 GGTCAGCGTGTTGGAGTTGT 60.814 55.000 0.00 0.00 0.00 3.32
389 390 1.014352 GTCAGCGTGTTGGAGTTGTT 58.986 50.000 0.00 0.00 0.00 2.83
390 391 1.003866 GTCAGCGTGTTGGAGTTGTTC 60.004 52.381 0.00 0.00 0.00 3.18
391 392 1.013596 CAGCGTGTTGGAGTTGTTCA 58.986 50.000 0.00 0.00 0.00 3.18
392 393 1.014352 AGCGTGTTGGAGTTGTTCAC 58.986 50.000 0.00 0.00 0.00 3.18
393 394 1.014352 GCGTGTTGGAGTTGTTCACT 58.986 50.000 0.00 0.00 39.07 3.41
394 395 1.400494 GCGTGTTGGAGTTGTTCACTT 59.600 47.619 0.00 0.00 35.01 3.16
395 396 2.791158 GCGTGTTGGAGTTGTTCACTTG 60.791 50.000 0.00 0.00 35.01 3.16
396 397 2.418628 CGTGTTGGAGTTGTTCACTTGT 59.581 45.455 0.00 0.00 35.01 3.16
397 398 3.119990 CGTGTTGGAGTTGTTCACTTGTT 60.120 43.478 0.00 0.00 35.01 2.83
398 399 4.412207 GTGTTGGAGTTGTTCACTTGTTC 58.588 43.478 0.00 0.00 35.01 3.18
403 404 7.040340 TGTTGGAGTTGTTCACTTGTTCTAAAA 60.040 33.333 0.00 0.00 35.01 1.52
404 405 6.848451 TGGAGTTGTTCACTTGTTCTAAAAC 58.152 36.000 0.00 0.00 35.01 2.43
413 414 6.282167 TCACTTGTTCTAAAACGTGATGGTA 58.718 36.000 0.00 0.00 38.28 3.25
415 416 6.202188 CACTTGTTCTAAAACGTGATGGTACT 59.798 38.462 0.00 0.00 38.28 2.73
416 417 6.202188 ACTTGTTCTAAAACGTGATGGTACTG 59.798 38.462 0.00 0.00 38.28 2.74
452 454 2.629051 GGTGCGCAGGAATTAGTAGTT 58.371 47.619 12.22 0.00 0.00 2.24
468 470 4.061357 GTAGTTCATCTACTCCTTGCCC 57.939 50.000 0.00 0.00 43.93 5.36
469 471 2.551270 AGTTCATCTACTCCTTGCCCA 58.449 47.619 0.00 0.00 0.00 5.36
470 472 2.237392 AGTTCATCTACTCCTTGCCCAC 59.763 50.000 0.00 0.00 0.00 4.61
471 473 1.951209 TCATCTACTCCTTGCCCACA 58.049 50.000 0.00 0.00 0.00 4.17
474 476 1.656587 TCTACTCCTTGCCCACACAT 58.343 50.000 0.00 0.00 0.00 3.21
475 477 1.278985 TCTACTCCTTGCCCACACATG 59.721 52.381 0.00 0.00 0.00 3.21
482 484 0.743688 TTGCCCACACATGACACAAC 59.256 50.000 0.00 0.00 0.00 3.32
491 493 4.677832 CACACATGACACAACACATCATTG 59.322 41.667 0.00 0.00 30.58 2.82
551 553 4.851214 GCCGCTCTCCCTCCTCCT 62.851 72.222 0.00 0.00 0.00 3.69
552 554 2.042435 CCGCTCTCCCTCCTCCTT 60.042 66.667 0.00 0.00 0.00 3.36
553 555 2.131067 CCGCTCTCCCTCCTCCTTC 61.131 68.421 0.00 0.00 0.00 3.46
554 556 2.131067 CGCTCTCCCTCCTCCTTCC 61.131 68.421 0.00 0.00 0.00 3.46
555 557 1.313129 GCTCTCCCTCCTCCTTCCT 59.687 63.158 0.00 0.00 0.00 3.36
556 558 0.326143 GCTCTCCCTCCTCCTTCCTT 60.326 60.000 0.00 0.00 0.00 3.36
557 559 1.903955 GCTCTCCCTCCTCCTTCCTTT 60.904 57.143 0.00 0.00 0.00 3.11
558 560 2.115427 CTCTCCCTCCTCCTTCCTTTC 58.885 57.143 0.00 0.00 0.00 2.62
559 561 1.208706 CTCCCTCCTCCTTCCTTTCC 58.791 60.000 0.00 0.00 0.00 3.13
560 562 0.800239 TCCCTCCTCCTTCCTTTCCT 59.200 55.000 0.00 0.00 0.00 3.36
561 563 1.154434 TCCCTCCTCCTTCCTTTCCTT 59.846 52.381 0.00 0.00 0.00 3.36
562 564 1.283321 CCCTCCTCCTTCCTTTCCTTG 59.717 57.143 0.00 0.00 0.00 3.61
563 565 1.283321 CCTCCTCCTTCCTTTCCTTGG 59.717 57.143 0.00 0.00 0.00 3.61
564 566 0.698818 TCCTCCTTCCTTTCCTTGGC 59.301 55.000 0.00 0.00 0.00 4.52
565 567 0.405585 CCTCCTTCCTTTCCTTGGCA 59.594 55.000 0.00 0.00 0.00 4.92
617 667 2.248248 CCTCCTCACTACCACTTCACA 58.752 52.381 0.00 0.00 0.00 3.58
648 701 2.432628 GCGTCACCAACCTCTCCG 60.433 66.667 0.00 0.00 0.00 4.63
667 731 0.300193 GAAGCTTTGCTCGATCGCTC 59.700 55.000 11.09 4.82 38.25 5.03
668 732 0.390340 AAGCTTTGCTCGATCGCTCA 60.390 50.000 11.09 7.65 38.25 4.26
766 842 2.089201 CTGACCATCATTGAGCTTGCA 58.911 47.619 0.00 0.00 0.00 4.08
826 908 0.321830 GCATGCAATTTGGCCCAGTT 60.322 50.000 14.21 0.00 0.00 3.16
911 995 4.079253 ACAACCAACTCTCTCTCTCTCTC 58.921 47.826 0.00 0.00 0.00 3.20
913 997 4.222124 ACCAACTCTCTCTCTCTCTCTC 57.778 50.000 0.00 0.00 0.00 3.20
914 998 3.846588 ACCAACTCTCTCTCTCTCTCTCT 59.153 47.826 0.00 0.00 0.00 3.10
968 1095 4.350346 TGTTGCACATTTCTGAACGAAAG 58.650 39.130 0.00 0.00 44.29 2.62
971 1098 3.218398 GCACATTTCTGAACGAAAGACG 58.782 45.455 0.00 0.00 44.29 4.18
1011 1138 5.074746 TGGTATTGTAGATGAGGAGCCTA 57.925 43.478 0.00 0.00 0.00 3.93
1477 1607 1.203075 ACCTCGACCTCTCCAAGAACT 60.203 52.381 0.00 0.00 0.00 3.01
1762 1892 2.675423 CCGTCACCCTCGACCTCA 60.675 66.667 0.00 0.00 31.91 3.86
1845 1975 1.758592 CTTCCTCAACAACCCCGGA 59.241 57.895 0.73 0.00 0.00 5.14
1905 2038 3.770040 CCGTCGGCATCCTCCACA 61.770 66.667 0.00 0.00 0.00 4.17
1955 2091 2.579201 CACTGGTGGACCTAGCCG 59.421 66.667 0.00 0.00 36.82 5.52
1957 2093 3.470888 CTGGTGGACCTAGCCGGG 61.471 72.222 2.18 0.00 36.97 5.73
1977 2113 1.745141 GCGATGAAGACCAGCCTCATT 60.745 52.381 0.00 0.00 0.00 2.57
1993 2129 3.369157 CCTCATTGTGCTCATCTCAGTCA 60.369 47.826 0.00 0.00 0.00 3.41
2148 2284 4.025401 GCAAACACGTGCGGGGAG 62.025 66.667 17.22 0.94 34.21 4.30
2149 2285 2.590575 CAAACACGTGCGGGGAGT 60.591 61.111 17.22 0.00 0.00 3.85
2150 2286 1.301087 CAAACACGTGCGGGGAGTA 60.301 57.895 17.22 0.00 0.00 2.59
2154 2290 2.035312 ACGTGCGGGGAGTACTCT 59.965 61.111 21.88 0.00 33.01 3.24
2191 2330 3.195698 GCGGCGGCGAGAAGAAAT 61.196 61.111 36.87 0.00 0.00 2.17
2194 2333 2.398554 GGCGGCGAGAAGAAATGCA 61.399 57.895 12.98 0.00 0.00 3.96
2584 2751 1.414158 CTCTCCTCCAATTCCCGCTA 58.586 55.000 0.00 0.00 0.00 4.26
2628 2801 2.504244 GCTCTGACCGAACGTCCG 60.504 66.667 0.00 0.00 41.18 4.79
2658 2834 1.059913 CCACCCTCCAGTGACTCTTT 58.940 55.000 0.00 0.00 40.34 2.52
2661 2837 3.307059 CCACCCTCCAGTGACTCTTTTAG 60.307 52.174 0.00 0.00 40.34 1.85
2662 2838 2.907042 ACCCTCCAGTGACTCTTTTAGG 59.093 50.000 0.00 0.00 0.00 2.69
2663 2839 2.237392 CCCTCCAGTGACTCTTTTAGGG 59.763 54.545 0.00 0.00 36.73 3.53
2664 2840 2.907042 CCTCCAGTGACTCTTTTAGGGT 59.093 50.000 0.00 0.00 0.00 4.34
2671 2847 6.295916 CCAGTGACTCTTTTAGGGTCTGTTAT 60.296 42.308 8.09 0.00 0.00 1.89
2706 2883 4.834496 AGAACTTCATGCAAATCCAAAGGA 59.166 37.500 0.00 0.00 35.55 3.36
2724 2901 6.015940 CCAAAGGATATAAAGCCATCTTGGAC 60.016 42.308 0.00 0.00 40.96 4.02
2725 2902 5.248380 AGGATATAAAGCCATCTTGGACC 57.752 43.478 0.00 0.00 40.96 4.46
2727 2904 5.006386 GGATATAAAGCCATCTTGGACCTG 58.994 45.833 0.00 0.00 40.96 4.00
2767 2944 6.114767 ACAAAACAAATGGCAGAACAGAATT 58.885 32.000 0.00 0.00 0.00 2.17
2776 2953 3.064207 GCAGAACAGAATTGGTGTCGTA 58.936 45.455 0.00 0.00 0.00 3.43
2789 2970 7.875327 ATTGGTGTCGTAATTAATTAAGGCT 57.125 32.000 21.13 3.79 29.67 4.58
2790 2971 8.967664 ATTGGTGTCGTAATTAATTAAGGCTA 57.032 30.769 21.13 9.37 29.67 3.93
2791 2972 7.775397 TGGTGTCGTAATTAATTAAGGCTAC 57.225 36.000 21.13 17.19 29.67 3.58
2792 2973 6.762661 TGGTGTCGTAATTAATTAAGGCTACC 59.237 38.462 23.72 23.72 33.25 3.18
2793 2974 6.074142 GGTGTCGTAATTAATTAAGGCTACCG 60.074 42.308 21.13 13.65 29.67 4.02
2794 2975 6.697019 GTGTCGTAATTAATTAAGGCTACCGA 59.303 38.462 21.13 15.26 29.67 4.69
2795 2976 7.222611 GTGTCGTAATTAATTAAGGCTACCGAA 59.777 37.037 21.13 3.21 29.67 4.30
2796 2977 7.927629 TGTCGTAATTAATTAAGGCTACCGAAT 59.072 33.333 21.13 0.00 29.67 3.34
2797 2978 8.768019 GTCGTAATTAATTAAGGCTACCGAATT 58.232 33.333 15.70 0.00 31.98 2.17
2798 2979 8.981647 TCGTAATTAATTAAGGCTACCGAATTC 58.018 33.333 17.52 0.00 30.56 2.17
2799 2980 8.225777 CGTAATTAATTAAGGCTACCGAATTCC 58.774 37.037 9.48 0.00 30.56 3.01
2806 2987 1.267806 GGCTACCGAATTCCGATACGA 59.732 52.381 0.00 0.00 41.76 3.43
2815 2996 5.332808 CCGAATTCCGATACGATACAAAACC 60.333 44.000 0.00 0.00 41.76 3.27
2817 2998 5.978934 ATTCCGATACGATACAAAACCAC 57.021 39.130 0.00 0.00 0.00 4.16
2827 3009 4.695455 CGATACAAAACCACAGATCCTTGT 59.305 41.667 0.00 0.00 0.00 3.16
2856 3038 5.245751 TGGCCACAAACAACATCTGATTAAT 59.754 36.000 0.00 0.00 0.00 1.40
2857 3039 6.435591 TGGCCACAAACAACATCTGATTAATA 59.564 34.615 0.00 0.00 0.00 0.98
2858 3040 7.039434 TGGCCACAAACAACATCTGATTAATAA 60.039 33.333 0.00 0.00 0.00 1.40
2863 3045 9.577110 ACAAACAACATCTGATTAATAAGCATG 57.423 29.630 0.00 3.54 0.00 4.06
2870 3052 6.250344 TCTGATTAATAAGCATGCATGAGC 57.750 37.500 30.64 15.92 42.57 4.26
2916 3098 0.171007 ATTTGTTGGATTGCGGCTCG 59.829 50.000 0.00 0.00 0.00 5.03
2996 3184 2.358737 GTCCAGCCAAGTGACCGG 60.359 66.667 0.00 0.00 0.00 5.28
3003 3191 0.459759 GCCAAGTGACCGGCTACTAC 60.460 60.000 11.18 0.00 45.29 2.73
3004 3192 0.179145 CCAAGTGACCGGCTACTACG 60.179 60.000 11.18 6.39 0.00 3.51
3014 3202 1.033574 GGCTACTACGGAGTCATGCT 58.966 55.000 1.79 0.00 43.93 3.79
3166 3363 1.907222 GCCCTGCCTTACCGGTTAGT 61.907 60.000 15.04 0.00 34.25 2.24
3276 3476 3.270027 CAATCCGCAAACTCCACTCATA 58.730 45.455 0.00 0.00 0.00 2.15
3277 3477 2.380084 TCCGCAAACTCCACTCATAC 57.620 50.000 0.00 0.00 0.00 2.39
3278 3478 0.999406 CCGCAAACTCCACTCATACG 59.001 55.000 0.00 0.00 0.00 3.06
3280 3480 2.416296 CCGCAAACTCCACTCATACGTA 60.416 50.000 0.00 0.00 0.00 3.57
3281 3481 2.852413 CGCAAACTCCACTCATACGTAG 59.148 50.000 0.08 0.00 0.00 3.51
3329 3530 7.805163 AGGATTAATGATGTGGATGTGTTAGA 58.195 34.615 0.00 0.00 0.00 2.10
3446 3649 0.972134 CTCTCCTGGCAGTGAACAGA 59.028 55.000 14.43 5.60 36.86 3.41
3486 3689 6.386050 TCCAAAAGGAGTAGATAGGTAAAGGG 59.614 42.308 0.00 0.00 0.00 3.95
3487 3690 6.409349 CCAAAAGGAGTAGATAGGTAAAGGGG 60.409 46.154 0.00 0.00 0.00 4.79
3623 3831 3.492313 GCAAAAGTGACAATTAGGAGCG 58.508 45.455 0.00 0.00 0.00 5.03
3658 3866 0.459489 AAGGCGCAACAAATGTGTGT 59.541 45.000 10.83 0.00 41.73 3.72
3660 3868 0.527385 GGCGCAACAAATGTGTGTGT 60.527 50.000 10.83 0.00 41.73 3.72
3668 3876 2.874701 ACAAATGTGTGTGTGAGAGAGC 59.125 45.455 0.00 0.00 36.31 4.09
3669 3877 2.874086 CAAATGTGTGTGTGAGAGAGCA 59.126 45.455 0.00 0.00 0.00 4.26
3670 3878 3.413846 AATGTGTGTGTGAGAGAGCAT 57.586 42.857 0.00 0.00 0.00 3.79
3671 3879 2.916702 TGTGTGTGTGAGAGAGCATT 57.083 45.000 0.00 0.00 0.00 3.56
3673 3881 2.102925 TGTGTGTGTGAGAGAGCATTGA 59.897 45.455 0.00 0.00 0.00 2.57
3674 3882 2.735663 GTGTGTGTGAGAGAGCATTGAG 59.264 50.000 0.00 0.00 0.00 3.02
3675 3883 2.366590 TGTGTGTGAGAGAGCATTGAGT 59.633 45.455 0.00 0.00 0.00 3.41
3676 3884 3.573967 TGTGTGTGAGAGAGCATTGAGTA 59.426 43.478 0.00 0.00 0.00 2.59
3677 3885 3.923461 GTGTGTGAGAGAGCATTGAGTAC 59.077 47.826 0.00 0.00 0.00 2.73
3678 3886 3.829026 TGTGTGAGAGAGCATTGAGTACT 59.171 43.478 0.00 0.00 0.00 2.73
3679 3887 4.172505 GTGTGAGAGAGCATTGAGTACTG 58.827 47.826 0.00 0.00 0.00 2.74
3680 3888 3.829026 TGTGAGAGAGCATTGAGTACTGT 59.171 43.478 0.00 0.00 0.00 3.55
3682 3890 5.124617 TGTGAGAGAGCATTGAGTACTGTAG 59.875 44.000 0.00 0.00 0.00 2.74
3685 3893 5.441500 AGAGAGCATTGAGTACTGTAGCTA 58.558 41.667 0.00 0.00 0.00 3.32
3686 3894 5.298276 AGAGAGCATTGAGTACTGTAGCTAC 59.702 44.000 17.30 17.30 0.00 3.58
3718 4447 6.857777 TGAATACATTTGCAAAAACAAGGG 57.142 33.333 17.19 2.90 0.00 3.95
3719 4448 5.762218 TGAATACATTTGCAAAAACAAGGGG 59.238 36.000 17.19 1.55 0.00 4.79
3721 4450 3.961849 ACATTTGCAAAAACAAGGGGTT 58.038 36.364 17.19 0.00 42.98 4.11
3734 4485 6.800072 AACAAGGGGTTTTATGAACTTTGA 57.200 33.333 0.00 0.00 35.82 2.69
3735 4486 6.994421 ACAAGGGGTTTTATGAACTTTGAT 57.006 33.333 0.00 0.00 0.00 2.57
3740 4491 9.492730 AAGGGGTTTTATGAACTTTGATCATAT 57.507 29.630 0.00 0.00 39.00 1.78
3783 4542 6.899393 ATAACAGAGTCAAATCAAAGCCAA 57.101 33.333 0.00 0.00 0.00 4.52
3786 4545 4.646492 ACAGAGTCAAATCAAAGCCAAACT 59.354 37.500 0.00 0.00 0.00 2.66
3787 4546 5.827797 ACAGAGTCAAATCAAAGCCAAACTA 59.172 36.000 0.00 0.00 0.00 2.24
3788 4547 6.145535 CAGAGTCAAATCAAAGCCAAACTAC 58.854 40.000 0.00 0.00 0.00 2.73
3789 4548 5.827797 AGAGTCAAATCAAAGCCAAACTACA 59.172 36.000 0.00 0.00 0.00 2.74
3790 4549 6.491403 AGAGTCAAATCAAAGCCAAACTACAT 59.509 34.615 0.00 0.00 0.00 2.29
3791 4550 6.449698 AGTCAAATCAAAGCCAAACTACATG 58.550 36.000 0.00 0.00 0.00 3.21
3792 4551 5.634859 GTCAAATCAAAGCCAAACTACATGG 59.365 40.000 0.00 0.00 41.08 3.66
3820 4579 6.271566 ACGTAGTAAGCTATAGAAACAAGCC 58.728 40.000 3.21 0.00 41.94 4.35
3821 4580 6.127535 ACGTAGTAAGCTATAGAAACAAGCCA 60.128 38.462 3.21 0.00 41.94 4.75
3822 4581 6.755141 CGTAGTAAGCTATAGAAACAAGCCAA 59.245 38.462 3.21 0.00 36.92 4.52
3823 4582 7.277098 CGTAGTAAGCTATAGAAACAAGCCAAA 59.723 37.037 3.21 0.00 36.92 3.28
3824 4583 9.110502 GTAGTAAGCTATAGAAACAAGCCAAAT 57.889 33.333 3.21 0.00 36.92 2.32
3825 4584 7.989826 AGTAAGCTATAGAAACAAGCCAAATG 58.010 34.615 3.21 0.00 36.92 2.32
3828 4587 7.651027 AGCTATAGAAACAAGCCAAATGAAT 57.349 32.000 3.21 0.00 36.92 2.57
3831 4590 8.078596 GCTATAGAAACAAGCCAAATGAATAGG 58.921 37.037 3.21 0.00 0.00 2.57
3832 4591 7.961326 ATAGAAACAAGCCAAATGAATAGGT 57.039 32.000 0.00 0.00 0.00 3.08
3834 4593 7.961326 AGAAACAAGCCAAATGAATAGGTAT 57.039 32.000 0.00 0.00 0.00 2.73
3836 4595 9.474313 AGAAACAAGCCAAATGAATAGGTATAA 57.526 29.630 0.00 0.00 0.00 0.98
3838 4597 7.259290 ACAAGCCAAATGAATAGGTATAACG 57.741 36.000 0.00 0.00 0.00 3.18
3839 4598 6.826741 ACAAGCCAAATGAATAGGTATAACGT 59.173 34.615 0.00 0.00 0.00 3.99
3840 4599 7.988599 ACAAGCCAAATGAATAGGTATAACGTA 59.011 33.333 0.00 0.00 0.00 3.57
3841 4600 8.999431 CAAGCCAAATGAATAGGTATAACGTAT 58.001 33.333 0.00 0.00 31.23 3.06
3855 4614 9.075678 AGGTATAACGTATAACTAGAATGCTGT 57.924 33.333 0.00 0.00 36.94 4.40
3856 4615 9.125906 GGTATAACGTATAACTAGAATGCTGTG 57.874 37.037 0.00 0.00 0.00 3.66
3857 4616 5.968387 AACGTATAACTAGAATGCTGTGC 57.032 39.130 0.00 0.00 0.00 4.57
3858 4617 4.369182 ACGTATAACTAGAATGCTGTGCC 58.631 43.478 0.00 0.00 0.00 5.01
3859 4618 4.142026 ACGTATAACTAGAATGCTGTGCCA 60.142 41.667 0.00 0.00 0.00 4.92
3892 4651 9.118236 GAACTTAGTTTTGTGCTTCATGTATTC 57.882 33.333 0.00 0.00 0.00 1.75
3901 4660 6.907741 TGTGCTTCATGTATTCGAATTTGAA 58.092 32.000 17.19 19.30 0.00 2.69
3904 4663 8.698854 GTGCTTCATGTATTCGAATTTGAAAAA 58.301 29.630 17.19 10.70 0.00 1.94
3905 4664 9.421806 TGCTTCATGTATTCGAATTTGAAAAAT 57.578 25.926 17.19 4.09 0.00 1.82
3916 4795 8.741101 TCGAATTTGAAAAATGTATCAACTGG 57.259 30.769 0.00 0.00 35.42 4.00
3937 4816 4.094887 TGGATTTTTGTAAGATGCTCGAGC 59.905 41.667 30.42 30.42 42.50 5.03
3961 4840 1.148310 ACAAGATTTCTGACGTGGCG 58.852 50.000 0.00 0.00 0.00 5.69
3971 4850 0.602060 TGACGTGGCGTTGGTATGTA 59.398 50.000 0.00 0.00 41.37 2.29
3979 4858 0.108520 CGTTGGTATGTACAGGGCGT 60.109 55.000 0.33 0.00 0.00 5.68
4450 5332 2.033141 GAGGGACAGCAGCAGCAA 59.967 61.111 3.17 0.00 45.49 3.91
4477 5359 2.994995 ATCGTGAGGTGGGTGCGA 60.995 61.111 0.00 0.00 36.02 5.10
4657 5539 0.036388 GCCTCGACAAGATTGGGTCA 60.036 55.000 0.00 0.00 33.66 4.02
4721 5611 3.008594 TCAGAATTGGTTATGTCACCGGT 59.991 43.478 0.00 0.00 40.09 5.28
4743 5633 3.687212 TGAACGTCTCACTTTCTTTGCAA 59.313 39.130 0.00 0.00 28.99 4.08
4750 5640 6.575201 CGTCTCACTTTCTTTGCAATTACTTC 59.425 38.462 0.00 0.00 0.00 3.01
4759 5649 7.104326 TCTTTGCAATTACTTCATTTTTCGC 57.896 32.000 0.00 0.00 0.00 4.70
4825 5729 4.693042 TTTCTTTGGGTCTTCTCCGTTA 57.307 40.909 0.00 0.00 0.00 3.18
4874 5785 8.497910 AGCAACTTATATCCTTCCATCTAAGA 57.502 34.615 0.00 0.00 0.00 2.10
4890 5801 2.332063 AAGAGCATATCCAACACGGG 57.668 50.000 0.00 0.00 34.36 5.28
4893 5804 1.152963 GCATATCCAACACGGGCCT 60.153 57.895 0.84 0.00 34.36 5.19
4904 5815 2.190841 ACGGGCCTTCAAACAACCG 61.191 57.895 0.84 0.00 46.16 4.44
4905 5816 2.338620 GGGCCTTCAAACAACCGC 59.661 61.111 0.84 0.00 0.00 5.68
4906 5817 2.494530 GGGCCTTCAAACAACCGCA 61.495 57.895 0.84 0.00 0.00 5.69
4915 5827 2.097629 TCAAACAACCGCAAATGTTCGA 59.902 40.909 0.00 0.00 38.75 3.71
4974 5886 5.456921 AATCACTATTTGTCCATGGACCT 57.543 39.130 36.27 24.44 43.97 3.85
4976 5888 3.054434 TCACTATTTGTCCATGGACCTGG 60.054 47.826 36.27 25.14 43.97 4.45
4997 5911 1.535462 CCAAATTCTCGCACCGAAAGT 59.465 47.619 0.00 0.00 34.74 2.66
5016 5930 7.360361 CGAAAGTAAACTTGAGCAAGGTTTAT 58.640 34.615 17.58 5.53 45.33 1.40
5026 5940 2.017113 GCAAGGTTTATGGGAGTCCGG 61.017 57.143 2.26 0.00 35.24 5.14
5044 5984 3.553597 GACATCCGACTGTCCGATC 57.446 57.895 8.39 0.00 39.72 3.69
5060 6000 3.448301 TCCGATCTAAAACCACCACGTAT 59.552 43.478 0.00 0.00 0.00 3.06
5072 6012 3.641906 CCACCACGTATCCTTTCCTATCT 59.358 47.826 0.00 0.00 0.00 1.98
5131 6076 5.925506 TTGACGGAAGGTGATTAGTATGA 57.074 39.130 0.00 0.00 0.00 2.15
5136 6081 7.067496 ACGGAAGGTGATTAGTATGATTGAT 57.933 36.000 0.00 0.00 0.00 2.57
5144 6089 7.201812 GGTGATTAGTATGATTGATGTTTGGCA 60.202 37.037 0.00 0.00 0.00 4.92
5149 6094 5.948162 AGTATGATTGATGTTTGGCAGAAGT 59.052 36.000 0.00 0.00 0.00 3.01
5219 6164 1.147153 GCAGAAGGAAGCGGGCTAT 59.853 57.895 0.00 0.00 0.00 2.97
5220 6165 0.464554 GCAGAAGGAAGCGGGCTATT 60.465 55.000 0.00 0.00 0.00 1.73
5239 6184 3.439857 TTTGGCTAGAAGGAAGCATGT 57.560 42.857 0.00 0.00 41.93 3.21
5319 6264 1.062148 CGTCTCGCACTTCAGATACGA 59.938 52.381 0.00 0.00 38.63 3.43
5344 6297 4.330074 GGTCGTCAAAATCTTCGATGACAT 59.670 41.667 13.36 0.00 44.10 3.06
5410 6371 3.576118 TCGCCTGAAAATTGAATTTGGGA 59.424 39.130 16.29 10.01 31.77 4.37
5424 6385 7.123355 TGAATTTGGGACAGTCAATTTTCTT 57.877 32.000 2.17 0.00 42.39 2.52
5428 6389 4.541705 TGGGACAGTCAATTTTCTTTCCA 58.458 39.130 2.17 0.00 33.64 3.53
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 2.512515 CGCCTCCCAAGCTACTGC 60.513 66.667 0.00 0.00 40.05 4.40
3 4 2.187946 CCGCCTCCCAAGCTACTG 59.812 66.667 0.00 0.00 0.00 2.74
43 44 4.104417 AGGTCGACGAGCGTCAGC 62.104 66.667 20.23 16.49 44.77 4.26
44 45 1.983196 ATGAGGTCGACGAGCGTCAG 61.983 60.000 23.37 14.04 44.77 3.51
45 46 1.978712 GATGAGGTCGACGAGCGTCA 61.979 60.000 20.23 21.42 44.77 4.35
46 47 1.297745 GATGAGGTCGACGAGCGTC 60.298 63.158 20.23 17.27 41.80 5.19
47 48 2.792599 GATGAGGTCGACGAGCGT 59.207 61.111 20.23 11.22 41.80 5.07
61 62 3.791928 CTCGTCGTCGGAGCCGATG 62.792 68.421 21.83 21.83 42.34 3.84
62 63 3.574445 CTCGTCGTCGGAGCCGAT 61.574 66.667 15.34 0.00 42.34 4.18
65 66 3.878519 CTCCTCGTCGTCGGAGCC 61.879 72.222 16.39 0.00 40.27 4.70
66 67 3.878519 CCTCCTCGTCGTCGGAGC 61.879 72.222 20.59 0.00 44.35 4.70
67 68 2.125229 TCCTCCTCGTCGTCGGAG 60.125 66.667 19.64 19.64 45.10 4.63
68 69 2.125229 CTCCTCCTCGTCGTCGGA 60.125 66.667 1.55 6.02 37.69 4.55
69 70 3.203412 CCTCCTCCTCGTCGTCGG 61.203 72.222 1.55 0.00 37.69 4.79
70 71 2.125229 TCCTCCTCCTCGTCGTCG 60.125 66.667 0.00 0.00 38.55 5.12
71 72 1.376942 TGTCCTCCTCCTCGTCGTC 60.377 63.158 0.00 0.00 0.00 4.20
72 73 1.674980 GTGTCCTCCTCCTCGTCGT 60.675 63.158 0.00 0.00 0.00 4.34
73 74 2.408241 GGTGTCCTCCTCCTCGTCG 61.408 68.421 0.00 0.00 0.00 5.12
74 75 0.255318 TAGGTGTCCTCCTCCTCGTC 59.745 60.000 0.00 0.00 38.86 4.20
75 76 0.256464 CTAGGTGTCCTCCTCCTCGT 59.744 60.000 0.00 0.00 38.86 4.18
76 77 0.466555 CCTAGGTGTCCTCCTCCTCG 60.467 65.000 0.00 0.00 38.86 4.63
77 78 0.105913 CCCTAGGTGTCCTCCTCCTC 60.106 65.000 8.29 0.00 38.86 3.71
78 79 2.020137 CCCTAGGTGTCCTCCTCCT 58.980 63.158 8.29 0.00 38.86 3.69
79 80 1.762858 GCCCTAGGTGTCCTCCTCC 60.763 68.421 8.29 0.00 38.86 4.30
80 81 1.001760 TGCCCTAGGTGTCCTCCTC 59.998 63.158 8.29 0.00 38.86 3.71
81 82 1.002274 CTGCCCTAGGTGTCCTCCT 59.998 63.158 8.29 0.00 41.20 3.69
82 83 1.306226 ACTGCCCTAGGTGTCCTCC 60.306 63.158 8.29 0.00 34.61 4.30
83 84 1.901085 CACTGCCCTAGGTGTCCTC 59.099 63.158 8.29 0.00 34.61 3.71
84 85 2.294078 GCACTGCCCTAGGTGTCCT 61.294 63.158 8.29 0.00 37.71 3.85
85 86 2.269241 GCACTGCCCTAGGTGTCC 59.731 66.667 8.29 0.00 36.03 4.02
86 87 2.125512 CGCACTGCCCTAGGTGTC 60.126 66.667 8.29 0.00 36.03 3.67
87 88 4.394712 GCGCACTGCCCTAGGTGT 62.395 66.667 8.29 0.58 37.76 4.16
96 97 0.955919 AAAACTAGGAGGCGCACTGC 60.956 55.000 10.83 9.65 45.38 4.40
97 98 2.380084 TAAAACTAGGAGGCGCACTG 57.620 50.000 10.83 2.21 0.00 3.66
98 99 2.302157 ACTTAAAACTAGGAGGCGCACT 59.698 45.455 10.83 6.74 0.00 4.40
99 100 2.696506 ACTTAAAACTAGGAGGCGCAC 58.303 47.619 10.83 1.82 0.00 5.34
100 101 3.412237 AACTTAAAACTAGGAGGCGCA 57.588 42.857 10.83 0.00 0.00 6.09
101 102 5.868043 TTAAACTTAAAACTAGGAGGCGC 57.132 39.130 0.00 0.00 0.00 6.53
133 134 9.661563 CACAAGTCCACATTACTTAGGTATAAA 57.338 33.333 0.00 0.00 35.44 1.40
134 135 8.262227 CCACAAGTCCACATTACTTAGGTATAA 58.738 37.037 0.00 0.00 35.44 0.98
135 136 7.620491 TCCACAAGTCCACATTACTTAGGTATA 59.380 37.037 0.00 0.00 35.44 1.47
136 137 6.442564 TCCACAAGTCCACATTACTTAGGTAT 59.557 38.462 0.00 0.00 35.44 2.73
137 138 5.781306 TCCACAAGTCCACATTACTTAGGTA 59.219 40.000 0.00 0.00 35.44 3.08
138 139 4.595781 TCCACAAGTCCACATTACTTAGGT 59.404 41.667 0.00 0.00 35.44 3.08
139 140 4.935808 GTCCACAAGTCCACATTACTTAGG 59.064 45.833 0.00 0.00 35.44 2.69
140 141 5.794894 AGTCCACAAGTCCACATTACTTAG 58.205 41.667 0.00 0.00 35.44 2.18
141 142 5.542635 AGAGTCCACAAGTCCACATTACTTA 59.457 40.000 0.00 0.00 35.44 2.24
142 143 4.348168 AGAGTCCACAAGTCCACATTACTT 59.652 41.667 0.00 0.00 37.67 2.24
143 144 3.904339 AGAGTCCACAAGTCCACATTACT 59.096 43.478 0.00 0.00 0.00 2.24
144 145 4.246458 GAGAGTCCACAAGTCCACATTAC 58.754 47.826 0.00 0.00 0.00 1.89
145 146 3.056821 CGAGAGTCCACAAGTCCACATTA 60.057 47.826 0.00 0.00 0.00 1.90
146 147 2.289072 CGAGAGTCCACAAGTCCACATT 60.289 50.000 0.00 0.00 0.00 2.71
147 148 1.273606 CGAGAGTCCACAAGTCCACAT 59.726 52.381 0.00 0.00 0.00 3.21
148 149 0.673985 CGAGAGTCCACAAGTCCACA 59.326 55.000 0.00 0.00 0.00 4.17
149 150 0.667792 GCGAGAGTCCACAAGTCCAC 60.668 60.000 0.00 0.00 0.00 4.02
150 151 1.666011 GCGAGAGTCCACAAGTCCA 59.334 57.895 0.00 0.00 0.00 4.02
151 152 1.079750 GGCGAGAGTCCACAAGTCC 60.080 63.158 0.00 0.00 0.00 3.85
152 153 1.444553 CGGCGAGAGTCCACAAGTC 60.445 63.158 0.00 0.00 0.00 3.01
153 154 2.651361 CGGCGAGAGTCCACAAGT 59.349 61.111 0.00 0.00 0.00 3.16
154 155 2.125912 CCGGCGAGAGTCCACAAG 60.126 66.667 9.30 0.00 0.00 3.16
155 156 4.373116 GCCGGCGAGAGTCCACAA 62.373 66.667 12.58 0.00 0.00 3.33
157 158 3.665675 AATGCCGGCGAGAGTCCAC 62.666 63.158 23.90 0.00 0.00 4.02
158 159 3.390521 AATGCCGGCGAGAGTCCA 61.391 61.111 23.90 0.49 0.00 4.02
159 160 2.892425 CAATGCCGGCGAGAGTCC 60.892 66.667 23.90 0.00 0.00 3.85
160 161 2.125512 ACAATGCCGGCGAGAGTC 60.126 61.111 23.90 0.00 0.00 3.36
161 162 2.434884 CACAATGCCGGCGAGAGT 60.435 61.111 23.90 14.83 0.00 3.24
162 163 3.197790 CCACAATGCCGGCGAGAG 61.198 66.667 23.90 14.12 0.00 3.20
170 171 5.291178 ACATTAATGTCGGCCACAATGCC 62.291 47.826 15.47 0.00 39.69 4.40
171 172 2.159254 ACATTAATGTCGGCCACAATGC 60.159 45.455 15.47 0.00 38.97 3.56
172 173 3.781079 ACATTAATGTCGGCCACAATG 57.219 42.857 15.47 9.70 38.97 2.82
173 174 4.799564 AAACATTAATGTCGGCCACAAT 57.200 36.364 21.02 2.22 40.80 2.71
174 175 5.707242 TTAAACATTAATGTCGGCCACAA 57.293 34.783 21.02 5.67 40.80 3.33
175 176 5.906113 ATTAAACATTAATGTCGGCCACA 57.094 34.783 21.02 7.05 40.80 4.17
176 177 8.865590 ATTTATTAAACATTAATGTCGGCCAC 57.134 30.769 21.02 0.25 40.80 5.01
233 234 4.543590 TTTTGAGGTGGCTCAACAAAAA 57.456 36.364 15.22 6.68 42.29 1.94
234 235 4.543590 TTTTTGAGGTGGCTCAACAAAA 57.456 36.364 14.27 14.27 42.29 2.44
235 236 4.440880 CATTTTTGAGGTGGCTCAACAAA 58.559 39.130 0.00 0.17 42.29 2.83
236 237 3.181467 CCATTTTTGAGGTGGCTCAACAA 60.181 43.478 0.00 0.00 42.29 2.83
237 238 2.364970 CCATTTTTGAGGTGGCTCAACA 59.635 45.455 0.00 0.00 42.29 3.33
238 239 2.627699 TCCATTTTTGAGGTGGCTCAAC 59.372 45.455 0.00 0.00 42.29 3.18
239 240 2.956132 TCCATTTTTGAGGTGGCTCAA 58.044 42.857 0.00 0.00 41.06 3.02
240 241 2.673775 TCCATTTTTGAGGTGGCTCA 57.326 45.000 0.00 0.00 33.01 4.26
241 242 3.091545 TGATCCATTTTTGAGGTGGCTC 58.908 45.455 0.00 0.00 33.01 4.70
242 243 3.094572 CTGATCCATTTTTGAGGTGGCT 58.905 45.455 0.00 0.00 33.01 4.75
243 244 2.167075 CCTGATCCATTTTTGAGGTGGC 59.833 50.000 0.00 0.00 33.01 5.01
244 245 2.167075 GCCTGATCCATTTTTGAGGTGG 59.833 50.000 0.00 0.00 0.00 4.61
245 246 2.167075 GGCCTGATCCATTTTTGAGGTG 59.833 50.000 0.00 0.00 0.00 4.00
246 247 2.225343 TGGCCTGATCCATTTTTGAGGT 60.225 45.455 3.32 0.00 0.00 3.85
247 248 2.459644 TGGCCTGATCCATTTTTGAGG 58.540 47.619 3.32 0.00 0.00 3.86
248 249 3.674138 CGTTGGCCTGATCCATTTTTGAG 60.674 47.826 3.32 0.00 35.77 3.02
249 250 2.230992 CGTTGGCCTGATCCATTTTTGA 59.769 45.455 3.32 0.00 35.77 2.69
250 251 2.029110 ACGTTGGCCTGATCCATTTTTG 60.029 45.455 3.32 0.00 35.77 2.44
251 252 2.247358 ACGTTGGCCTGATCCATTTTT 58.753 42.857 3.32 0.00 35.77 1.94
252 253 1.923356 ACGTTGGCCTGATCCATTTT 58.077 45.000 3.32 0.00 35.77 1.82
253 254 1.545582 CAACGTTGGCCTGATCCATTT 59.454 47.619 20.71 0.00 35.77 2.32
254 255 1.176527 CAACGTTGGCCTGATCCATT 58.823 50.000 20.71 0.00 35.77 3.16
255 256 0.680921 CCAACGTTGGCCTGATCCAT 60.681 55.000 32.87 0.00 42.21 3.41
256 257 1.303236 CCAACGTTGGCCTGATCCA 60.303 57.895 32.87 0.00 42.21 3.41
257 258 3.590824 CCAACGTTGGCCTGATCC 58.409 61.111 32.87 0.00 42.21 3.36
266 267 2.082366 GCGCTTGCATCCAACGTTG 61.082 57.895 21.47 21.47 38.92 4.10
267 268 2.255252 GCGCTTGCATCCAACGTT 59.745 55.556 0.00 0.00 38.92 3.99
268 269 3.737172 GGCGCTTGCATCCAACGT 61.737 61.111 7.64 0.00 41.71 3.99
269 270 4.817063 CGGCGCTTGCATCCAACG 62.817 66.667 7.64 0.00 41.71 4.10
270 271 3.430862 TCGGCGCTTGCATCCAAC 61.431 61.111 7.64 0.00 41.71 3.77
271 272 3.430862 GTCGGCGCTTGCATCCAA 61.431 61.111 7.64 0.00 41.71 3.53
277 278 4.700365 GTTTGGGTCGGCGCTTGC 62.700 66.667 7.64 0.00 38.11 4.01
278 279 4.383602 CGTTTGGGTCGGCGCTTG 62.384 66.667 7.64 0.00 0.00 4.01
283 284 3.588891 CTTTCGCGTTTGGGTCGGC 62.589 63.158 5.77 0.00 0.00 5.54
284 285 2.554272 CTTTCGCGTTTGGGTCGG 59.446 61.111 5.77 0.00 0.00 4.79
285 286 2.127383 GCTTTCGCGTTTGGGTCG 60.127 61.111 5.77 0.00 0.00 4.79
286 287 1.082104 CTGCTTTCGCGTTTGGGTC 60.082 57.895 5.77 0.00 39.65 4.46
287 288 1.525077 TCTGCTTTCGCGTTTGGGT 60.525 52.632 5.77 0.00 39.65 4.51
288 289 1.082104 GTCTGCTTTCGCGTTTGGG 60.082 57.895 5.77 0.00 39.65 4.12
289 290 0.238289 ATGTCTGCTTTCGCGTTTGG 59.762 50.000 5.77 0.00 39.65 3.28
290 291 1.321016 CATGTCTGCTTTCGCGTTTG 58.679 50.000 5.77 0.00 39.65 2.93
291 292 0.238289 CCATGTCTGCTTTCGCGTTT 59.762 50.000 5.77 0.00 39.65 3.60
292 293 1.577328 CCCATGTCTGCTTTCGCGTT 61.577 55.000 5.77 0.00 39.65 4.84
293 294 2.034879 CCCATGTCTGCTTTCGCGT 61.035 57.895 5.77 0.00 39.65 6.01
294 295 2.787249 CCCATGTCTGCTTTCGCG 59.213 61.111 0.00 0.00 39.65 5.87
295 296 1.660560 ATGCCCATGTCTGCTTTCGC 61.661 55.000 0.00 0.00 0.00 4.70
296 297 0.379669 GATGCCCATGTCTGCTTTCG 59.620 55.000 0.00 0.00 0.00 3.46
297 298 0.743097 GGATGCCCATGTCTGCTTTC 59.257 55.000 0.00 0.00 0.00 2.62
298 299 1.033746 CGGATGCCCATGTCTGCTTT 61.034 55.000 0.00 0.00 0.00 3.51
299 300 1.452651 CGGATGCCCATGTCTGCTT 60.453 57.895 0.00 0.00 0.00 3.91
300 301 2.191375 CGGATGCCCATGTCTGCT 59.809 61.111 0.00 0.00 0.00 4.24
301 302 3.589881 GCGGATGCCCATGTCTGC 61.590 66.667 0.00 0.00 39.31 4.26
302 303 2.184830 CAGCGGATGCCCATGTCTG 61.185 63.158 0.00 0.00 44.31 3.51
303 304 1.913951 TTCAGCGGATGCCCATGTCT 61.914 55.000 0.00 0.00 44.31 3.41
304 305 1.451927 TTCAGCGGATGCCCATGTC 60.452 57.895 0.00 0.00 44.31 3.06
305 306 1.750399 GTTCAGCGGATGCCCATGT 60.750 57.895 0.00 0.00 44.31 3.21
306 307 2.484062 GGTTCAGCGGATGCCCATG 61.484 63.158 0.00 0.00 44.31 3.66
307 308 2.124151 GGTTCAGCGGATGCCCAT 60.124 61.111 0.00 0.00 44.31 4.00
308 309 4.776322 CGGTTCAGCGGATGCCCA 62.776 66.667 0.00 0.00 44.31 5.36
309 310 4.467084 TCGGTTCAGCGGATGCCC 62.467 66.667 0.00 0.00 44.31 5.36
310 311 3.195698 GTCGGTTCAGCGGATGCC 61.196 66.667 0.00 0.00 44.31 4.40
311 312 3.195698 GGTCGGTTCAGCGGATGC 61.196 66.667 0.00 0.00 43.24 3.91
312 313 2.511600 GGGTCGGTTCAGCGGATG 60.512 66.667 0.00 0.00 0.00 3.51
313 314 2.119484 TTTGGGTCGGTTCAGCGGAT 62.119 55.000 0.00 0.00 0.00 4.18
314 315 2.809307 TTTGGGTCGGTTCAGCGGA 61.809 57.895 0.00 0.00 0.00 5.54
315 316 2.281208 TTTGGGTCGGTTCAGCGG 60.281 61.111 0.00 0.00 0.00 5.52
316 317 2.613506 GGTTTGGGTCGGTTCAGCG 61.614 63.158 0.00 0.00 0.00 5.18
317 318 1.104577 TTGGTTTGGGTCGGTTCAGC 61.105 55.000 0.00 0.00 0.00 4.26
318 319 1.394618 TTTGGTTTGGGTCGGTTCAG 58.605 50.000 0.00 0.00 0.00 3.02
319 320 1.848652 TTTTGGTTTGGGTCGGTTCA 58.151 45.000 0.00 0.00 0.00 3.18
320 321 2.963548 TTTTTGGTTTGGGTCGGTTC 57.036 45.000 0.00 0.00 0.00 3.62
337 338 8.201464 GGATAACCCGATTTTGTCCATATTTTT 58.799 33.333 0.00 0.00 35.03 1.94
338 339 7.722363 GGATAACCCGATTTTGTCCATATTTT 58.278 34.615 0.00 0.00 35.03 1.82
339 340 7.284919 GGATAACCCGATTTTGTCCATATTT 57.715 36.000 0.00 0.00 35.03 1.40
340 341 6.894339 GGATAACCCGATTTTGTCCATATT 57.106 37.500 0.00 0.00 35.03 1.28
355 356 1.746470 CTGACCCAAACGGATAACCC 58.254 55.000 0.00 0.00 34.64 4.11
356 357 1.092348 GCTGACCCAAACGGATAACC 58.908 55.000 0.00 0.00 34.64 2.85
357 358 0.725117 CGCTGACCCAAACGGATAAC 59.275 55.000 0.00 0.00 34.64 1.89
358 359 0.322322 ACGCTGACCCAAACGGATAA 59.678 50.000 0.00 0.00 34.64 1.75
359 360 0.390603 CACGCTGACCCAAACGGATA 60.391 55.000 0.00 0.00 34.64 2.59
360 361 1.671054 CACGCTGACCCAAACGGAT 60.671 57.895 0.00 0.00 34.64 4.18
361 362 2.280524 CACGCTGACCCAAACGGA 60.281 61.111 0.00 0.00 34.64 4.69
362 363 2.184167 AACACGCTGACCCAAACGG 61.184 57.895 0.00 0.00 37.81 4.44
363 364 1.010125 CAACACGCTGACCCAAACG 60.010 57.895 0.00 0.00 0.00 3.60
364 365 1.098712 TCCAACACGCTGACCCAAAC 61.099 55.000 0.00 0.00 0.00 2.93
365 366 0.817634 CTCCAACACGCTGACCCAAA 60.818 55.000 0.00 0.00 0.00 3.28
366 367 1.227823 CTCCAACACGCTGACCCAA 60.228 57.895 0.00 0.00 0.00 4.12
367 368 1.978455 AACTCCAACACGCTGACCCA 61.978 55.000 0.00 0.00 0.00 4.51
368 369 1.227853 AACTCCAACACGCTGACCC 60.228 57.895 0.00 0.00 0.00 4.46
369 370 0.814010 ACAACTCCAACACGCTGACC 60.814 55.000 0.00 0.00 0.00 4.02
370 371 1.003866 GAACAACTCCAACACGCTGAC 60.004 52.381 0.00 0.00 0.00 3.51
371 372 1.295792 GAACAACTCCAACACGCTGA 58.704 50.000 0.00 0.00 0.00 4.26
372 373 1.013596 TGAACAACTCCAACACGCTG 58.986 50.000 0.00 0.00 0.00 5.18
373 374 1.014352 GTGAACAACTCCAACACGCT 58.986 50.000 0.00 0.00 0.00 5.07
374 375 1.014352 AGTGAACAACTCCAACACGC 58.986 50.000 0.00 0.00 31.64 5.34
375 376 2.418628 ACAAGTGAACAACTCCAACACG 59.581 45.455 0.00 0.00 38.56 4.49
376 377 4.156008 AGAACAAGTGAACAACTCCAACAC 59.844 41.667 0.00 0.00 38.56 3.32
377 378 4.331968 AGAACAAGTGAACAACTCCAACA 58.668 39.130 0.00 0.00 38.56 3.33
378 379 4.965119 AGAACAAGTGAACAACTCCAAC 57.035 40.909 0.00 0.00 38.56 3.77
379 380 7.309920 GTTTTAGAACAAGTGAACAACTCCAA 58.690 34.615 0.00 0.00 38.56 3.53
380 381 6.402766 CGTTTTAGAACAAGTGAACAACTCCA 60.403 38.462 0.00 0.00 38.56 3.86
381 382 5.963586 CGTTTTAGAACAAGTGAACAACTCC 59.036 40.000 0.00 0.00 38.56 3.85
382 383 6.464834 CACGTTTTAGAACAAGTGAACAACTC 59.535 38.462 0.00 0.00 38.56 3.01
383 384 6.148150 TCACGTTTTAGAACAAGTGAACAACT 59.852 34.615 4.94 0.00 42.60 3.16
384 385 6.308675 TCACGTTTTAGAACAAGTGAACAAC 58.691 36.000 4.94 0.00 34.98 3.32
385 386 6.483385 TCACGTTTTAGAACAAGTGAACAA 57.517 33.333 4.94 0.00 34.98 2.83
386 387 6.457663 CCATCACGTTTTAGAACAAGTGAACA 60.458 38.462 9.74 0.00 38.62 3.18
387 388 5.907391 CCATCACGTTTTAGAACAAGTGAAC 59.093 40.000 9.74 0.00 38.62 3.18
388 389 5.587043 ACCATCACGTTTTAGAACAAGTGAA 59.413 36.000 9.74 0.00 38.62 3.18
389 390 5.120399 ACCATCACGTTTTAGAACAAGTGA 58.880 37.500 8.58 8.58 39.10 3.41
390 391 5.418310 ACCATCACGTTTTAGAACAAGTG 57.582 39.130 0.00 0.00 35.44 3.16
391 392 6.202188 CAGTACCATCACGTTTTAGAACAAGT 59.798 38.462 0.00 0.00 35.44 3.16
392 393 6.590357 CAGTACCATCACGTTTTAGAACAAG 58.410 40.000 0.00 0.00 35.44 3.16
393 394 5.049954 GCAGTACCATCACGTTTTAGAACAA 60.050 40.000 0.00 0.00 35.44 2.83
394 395 4.449743 GCAGTACCATCACGTTTTAGAACA 59.550 41.667 0.00 0.00 35.44 3.18
395 396 4.689345 AGCAGTACCATCACGTTTTAGAAC 59.311 41.667 0.00 0.00 0.00 3.01
396 397 4.890088 AGCAGTACCATCACGTTTTAGAA 58.110 39.130 0.00 0.00 0.00 2.10
397 398 4.021807 TGAGCAGTACCATCACGTTTTAGA 60.022 41.667 0.00 0.00 0.00 2.10
398 399 4.242475 TGAGCAGTACCATCACGTTTTAG 58.758 43.478 0.00 0.00 0.00 1.85
403 404 2.037251 AGTTTGAGCAGTACCATCACGT 59.963 45.455 0.00 0.00 0.00 4.49
404 405 2.668457 GAGTTTGAGCAGTACCATCACG 59.332 50.000 0.00 0.00 0.00 4.35
413 414 0.940126 CGCAGTTGAGTTTGAGCAGT 59.060 50.000 0.00 0.00 0.00 4.40
415 416 0.463654 ACCGCAGTTGAGTTTGAGCA 60.464 50.000 0.00 0.00 0.00 4.26
416 417 0.040958 CACCGCAGTTGAGTTTGAGC 60.041 55.000 0.00 0.00 0.00 4.26
452 454 1.555075 GTGTGGGCAAGGAGTAGATGA 59.445 52.381 0.00 0.00 0.00 2.92
463 465 0.743688 GTTGTGTCATGTGTGGGCAA 59.256 50.000 0.00 0.00 0.00 4.52
465 467 0.030638 GTGTTGTGTCATGTGTGGGC 59.969 55.000 0.00 0.00 0.00 5.36
467 469 2.617774 TGATGTGTTGTGTCATGTGTGG 59.382 45.455 0.00 0.00 0.00 4.17
468 470 3.967203 TGATGTGTTGTGTCATGTGTG 57.033 42.857 0.00 0.00 0.00 3.82
469 471 4.261698 CCAATGATGTGTTGTGTCATGTGT 60.262 41.667 0.00 0.00 33.19 3.72
470 472 4.231439 CCAATGATGTGTTGTGTCATGTG 58.769 43.478 0.00 0.00 33.19 3.21
471 473 3.305539 GCCAATGATGTGTTGTGTCATGT 60.306 43.478 0.00 0.00 33.19 3.21
474 476 2.585330 AGCCAATGATGTGTTGTGTCA 58.415 42.857 0.00 0.00 0.00 3.58
475 477 3.568538 GAAGCCAATGATGTGTTGTGTC 58.431 45.455 0.00 0.00 0.00 3.67
482 484 0.819582 GGTGGGAAGCCAATGATGTG 59.180 55.000 0.00 0.00 0.00 3.21
541 543 0.800239 AGGAAAGGAAGGAGGAGGGA 59.200 55.000 0.00 0.00 0.00 4.20
545 547 0.698818 GCCAAGGAAAGGAAGGAGGA 59.301 55.000 0.00 0.00 0.00 3.71
546 548 0.405585 TGCCAAGGAAAGGAAGGAGG 59.594 55.000 0.00 0.00 0.00 4.30
547 549 1.539157 GTGCCAAGGAAAGGAAGGAG 58.461 55.000 0.00 0.00 0.00 3.69
548 550 0.112412 GGTGCCAAGGAAAGGAAGGA 59.888 55.000 0.00 0.00 0.00 3.36
550 552 0.178964 TGGGTGCCAAGGAAAGGAAG 60.179 55.000 0.00 0.00 0.00 3.46
551 553 0.486879 ATGGGTGCCAAGGAAAGGAA 59.513 50.000 0.00 0.00 36.95 3.36
552 554 0.251742 CATGGGTGCCAAGGAAAGGA 60.252 55.000 0.00 0.00 36.95 3.36
553 555 1.891722 GCATGGGTGCCAAGGAAAGG 61.892 60.000 0.00 0.00 45.76 3.11
554 556 1.593265 GCATGGGTGCCAAGGAAAG 59.407 57.895 0.00 0.00 45.76 2.62
555 557 3.790223 GCATGGGTGCCAAGGAAA 58.210 55.556 0.00 0.00 45.76 3.13
648 701 0.300193 GAGCGATCGAGCAAAGCTTC 59.700 55.000 21.57 0.00 39.88 3.86
667 731 2.954753 GCGCTGACACGGGTTCTTG 61.955 63.158 0.00 0.00 0.00 3.02
668 732 2.665185 GCGCTGACACGGGTTCTT 60.665 61.111 0.00 0.00 0.00 2.52
766 842 1.650912 GATCCGCGCATGCTGATTT 59.349 52.632 17.13 0.00 43.93 2.17
911 995 1.131504 GCGTGTACTCCACTGAGAGAG 59.868 57.143 6.50 3.36 42.20 3.20
913 997 0.881796 TGCGTGTACTCCACTGAGAG 59.118 55.000 0.00 0.00 42.20 3.20
914 998 0.596577 GTGCGTGTACTCCACTGAGA 59.403 55.000 0.00 0.00 42.20 3.27
968 1095 0.603975 AGCTGGTTCTTTGCTCCGTC 60.604 55.000 0.00 0.00 30.41 4.79
971 1098 1.000171 CCAAAGCTGGTTCTTTGCTCC 60.000 52.381 9.92 0.00 47.00 4.70
995 1122 2.311463 GCAGTAGGCTCCTCATCTACA 58.689 52.381 0.00 0.00 40.25 2.74
1011 1138 1.131638 TTCCAAGTGAGGAGTGCAGT 58.868 50.000 0.00 0.00 39.25 4.40
1197 1327 2.594962 GGTGTTGACGCAGGACACG 61.595 63.158 0.00 0.00 43.41 4.49
1201 1331 1.816863 GAGGAGGTGTTGACGCAGGA 61.817 60.000 0.00 0.00 0.00 3.86
1539 1669 1.453155 CGGAGAACCCATTGTTGGAG 58.547 55.000 0.00 0.00 46.92 3.86
1540 1670 0.037590 CCGGAGAACCCATTGTTGGA 59.962 55.000 0.00 0.00 46.92 3.53
1637 1767 3.531207 CGAGCTCAGGCGGGATGA 61.531 66.667 15.40 0.00 44.37 2.92
1721 1851 4.659986 GGAGACGTCCTAGCTCCA 57.340 61.111 13.01 0.00 45.89 3.86
1762 1892 0.035458 CCGGAGAGGTTGTTGAAGCT 59.965 55.000 0.00 0.00 42.73 3.74
1824 1954 1.971695 GGGGTTGTTGAGGAAGGCG 60.972 63.158 0.00 0.00 0.00 5.52
1905 2038 4.309950 GTGGTTGTCGGAGGCGGT 62.310 66.667 0.00 0.00 28.88 5.68
1939 2072 2.683933 CCGGCTAGGTCCACCAGT 60.684 66.667 0.00 0.00 38.89 4.00
1944 2077 4.853142 ATCGCCCGGCTAGGTCCA 62.853 66.667 8.05 0.00 38.74 4.02
1947 2080 2.762459 TTCATCGCCCGGCTAGGT 60.762 61.111 8.05 0.00 38.74 3.08
1955 2091 2.514824 GGCTGGTCTTCATCGCCC 60.515 66.667 0.00 0.00 34.75 6.13
1957 2093 0.179062 ATGAGGCTGGTCTTCATCGC 60.179 55.000 0.00 0.00 0.00 4.58
1977 2113 0.244721 CGGTGACTGAGATGAGCACA 59.755 55.000 0.00 0.00 0.00 4.57
2148 2284 0.455005 CCGACCCTTCCGAAGAGTAC 59.545 60.000 9.87 0.00 0.00 2.73
2149 2285 0.329261 TCCGACCCTTCCGAAGAGTA 59.671 55.000 9.87 0.00 0.00 2.59
2150 2286 1.076192 TCCGACCCTTCCGAAGAGT 59.924 57.895 9.87 1.90 0.00 3.24
2154 2290 4.060038 GCGTCCGACCCTTCCGAA 62.060 66.667 0.00 0.00 0.00 4.30
2466 2619 2.278857 CAGTAGTAGGCGCGCAGG 60.279 66.667 34.42 8.25 0.00 4.85
2644 2820 3.835395 AGACCCTAAAAGAGTCACTGGAG 59.165 47.826 0.00 0.00 32.82 3.86
2645 2821 3.578716 CAGACCCTAAAAGAGTCACTGGA 59.421 47.826 0.00 0.00 32.82 3.86
2658 2834 5.568023 CGAACCAGTTCATAACAGACCCTAA 60.568 44.000 10.90 0.00 39.46 2.69
2661 2837 3.000727 CGAACCAGTTCATAACAGACCC 58.999 50.000 10.90 0.00 39.46 4.46
2662 2838 3.921677 TCGAACCAGTTCATAACAGACC 58.078 45.455 10.90 0.00 39.46 3.85
2663 2839 4.806330 TCTCGAACCAGTTCATAACAGAC 58.194 43.478 10.90 0.00 39.46 3.51
2664 2840 5.010719 AGTTCTCGAACCAGTTCATAACAGA 59.989 40.000 10.90 1.48 42.06 3.41
2671 2847 3.812156 TGAAGTTCTCGAACCAGTTCA 57.188 42.857 10.90 7.33 42.06 3.18
2706 2883 5.912149 TCAGGTCCAAGATGGCTTTATAT 57.088 39.130 0.00 0.00 37.47 0.86
2724 2901 7.171678 TGTTTTGTTTAGGTTGTGTTTTTCAGG 59.828 33.333 0.00 0.00 0.00 3.86
2725 2902 8.077836 TGTTTTGTTTAGGTTGTGTTTTTCAG 57.922 30.769 0.00 0.00 0.00 3.02
2727 2904 9.885934 ATTTGTTTTGTTTAGGTTGTGTTTTTC 57.114 25.926 0.00 0.00 0.00 2.29
2767 2944 6.762661 GGTAGCCTTAATTAATTACGACACCA 59.237 38.462 12.08 0.00 0.00 4.17
2776 2953 6.993902 TCGGAATTCGGTAGCCTTAATTAATT 59.006 34.615 12.22 5.89 39.77 1.40
2789 2970 5.687770 TTGTATCGTATCGGAATTCGGTA 57.312 39.130 12.22 0.29 39.77 4.02
2790 2971 4.572985 TTGTATCGTATCGGAATTCGGT 57.427 40.909 12.22 1.20 39.77 4.69
2791 2972 5.332808 GGTTTTGTATCGTATCGGAATTCGG 60.333 44.000 6.67 6.67 39.77 4.30
2792 2973 5.232626 TGGTTTTGTATCGTATCGGAATTCG 59.767 40.000 0.00 0.00 40.90 3.34
2793 2974 6.036300 TGTGGTTTTGTATCGTATCGGAATTC 59.964 38.462 0.00 0.00 0.00 2.17
2794 2975 5.875910 TGTGGTTTTGTATCGTATCGGAATT 59.124 36.000 0.00 0.00 0.00 2.17
2795 2976 5.421277 TGTGGTTTTGTATCGTATCGGAAT 58.579 37.500 0.00 0.00 0.00 3.01
2796 2977 4.818642 TGTGGTTTTGTATCGTATCGGAA 58.181 39.130 0.00 0.00 0.00 4.30
2797 2978 4.158209 TCTGTGGTTTTGTATCGTATCGGA 59.842 41.667 0.00 0.00 0.00 4.55
2798 2979 4.426416 TCTGTGGTTTTGTATCGTATCGG 58.574 43.478 0.00 0.00 0.00 4.18
2799 2980 5.175126 GGATCTGTGGTTTTGTATCGTATCG 59.825 44.000 0.00 0.00 0.00 2.92
2806 2987 6.323739 ACAAACAAGGATCTGTGGTTTTGTAT 59.676 34.615 12.16 0.00 29.89 2.29
2815 2996 2.288395 GGCCAACAAACAAGGATCTGTG 60.288 50.000 0.00 0.00 0.00 3.66
2817 2998 1.962807 TGGCCAACAAACAAGGATCTG 59.037 47.619 0.61 0.00 0.00 2.90
2856 3038 1.324383 CCATGGCTCATGCATGCTTA 58.676 50.000 22.25 8.36 40.20 3.09
2857 3039 0.686441 ACCATGGCTCATGCATGCTT 60.686 50.000 22.25 10.16 40.20 3.91
2858 3040 1.076265 ACCATGGCTCATGCATGCT 60.076 52.632 22.25 1.07 40.20 3.79
2863 3045 1.141019 CTTGCACCATGGCTCATGC 59.859 57.895 13.04 14.95 40.20 4.06
2870 3052 2.967397 CACAGCCTTGCACCATGG 59.033 61.111 11.19 11.19 0.00 3.66
2916 3098 0.388520 GCATTTTCCTTCCCGTGCAC 60.389 55.000 6.82 6.82 33.09 4.57
2923 3105 1.474077 ACAGCGATGCATTTTCCTTCC 59.526 47.619 0.00 0.00 0.00 3.46
2948 3130 2.033801 CAGCAGGCTAAAATCCATTCCG 59.966 50.000 0.00 0.00 0.00 4.30
2996 3184 2.464865 CAAGCATGACTCCGTAGTAGC 58.535 52.381 0.00 0.00 35.56 3.58
3003 3191 2.456119 GCGACCAAGCATGACTCCG 61.456 63.158 0.00 0.00 37.05 4.63
3004 3192 2.456119 CGCGACCAAGCATGACTCC 61.456 63.158 0.00 0.00 36.85 3.85
3014 3202 1.098712 AAGCTTTTCACCGCGACCAA 61.099 50.000 8.23 0.00 0.00 3.67
3052 3240 5.334337 CCGGACAAGATTGCATATGTACATG 60.334 44.000 18.81 5.31 0.00 3.21
3053 3241 4.756642 CCGGACAAGATTGCATATGTACAT 59.243 41.667 13.93 13.93 0.00 2.29
3057 3245 2.945008 CACCGGACAAGATTGCATATGT 59.055 45.455 9.46 0.00 0.00 2.29
3166 3363 1.146041 GGTGGCAGTGACAGTGACA 59.854 57.895 15.13 15.13 33.29 3.58
3276 3476 6.567959 GGTTTCCTTAATGCTAGTACTACGT 58.432 40.000 0.00 0.00 0.00 3.57
3277 3477 5.684626 CGGTTTCCTTAATGCTAGTACTACG 59.315 44.000 0.00 0.00 0.00 3.51
3278 3478 6.567959 ACGGTTTCCTTAATGCTAGTACTAC 58.432 40.000 0.00 0.00 0.00 2.73
3280 3480 5.672421 ACGGTTTCCTTAATGCTAGTACT 57.328 39.130 0.00 0.00 0.00 2.73
3281 3481 6.478016 CCTTACGGTTTCCTTAATGCTAGTAC 59.522 42.308 0.00 0.00 0.00 2.73
3282 3482 6.380846 TCCTTACGGTTTCCTTAATGCTAGTA 59.619 38.462 0.00 0.00 0.00 1.82
3283 3483 5.188359 TCCTTACGGTTTCCTTAATGCTAGT 59.812 40.000 0.00 0.00 0.00 2.57
3284 3484 5.667466 TCCTTACGGTTTCCTTAATGCTAG 58.333 41.667 0.00 0.00 0.00 3.42
3285 3485 5.680594 TCCTTACGGTTTCCTTAATGCTA 57.319 39.130 0.00 0.00 0.00 3.49
3286 3486 4.563140 TCCTTACGGTTTCCTTAATGCT 57.437 40.909 0.00 0.00 0.00 3.79
3287 3487 5.830000 AATCCTTACGGTTTCCTTAATGC 57.170 39.130 0.00 0.00 0.00 3.56
3289 3489 9.862149 ATCATTAATCCTTACGGTTTCCTTAAT 57.138 29.630 0.00 0.00 0.00 1.40
3290 3490 9.116067 CATCATTAATCCTTACGGTTTCCTTAA 57.884 33.333 0.00 0.00 0.00 1.85
3291 3491 8.269317 ACATCATTAATCCTTACGGTTTCCTTA 58.731 33.333 0.00 0.00 0.00 2.69
3292 3492 7.067008 CACATCATTAATCCTTACGGTTTCCTT 59.933 37.037 0.00 0.00 0.00 3.36
3299 3500 5.997746 ACATCCACATCATTAATCCTTACGG 59.002 40.000 0.00 0.00 0.00 4.02
3313 3514 4.201950 GCATTGGTCTAACACATCCACATC 60.202 45.833 0.00 0.00 0.00 3.06
3321 3522 1.818060 GGCATGCATTGGTCTAACACA 59.182 47.619 21.36 0.00 0.00 3.72
3322 3523 1.818060 TGGCATGCATTGGTCTAACAC 59.182 47.619 21.36 0.00 0.00 3.32
3329 3530 1.274167 CTCTGTTTGGCATGCATTGGT 59.726 47.619 21.36 0.00 0.00 3.67
3446 3649 7.660030 TCCTTTTGGATCTTTCTTCACTTTT 57.340 32.000 0.00 0.00 45.19 2.27
3486 3689 1.376037 CCTTGTCTGTCGGAAGGCC 60.376 63.158 0.00 0.00 30.26 5.19
3487 3690 1.376037 CCCTTGTCTGTCGGAAGGC 60.376 63.158 0.00 0.00 35.79 4.35
3527 3730 3.373565 CAGCAAGGTTTCGGGCCC 61.374 66.667 13.57 13.57 0.00 5.80
3542 3745 2.104859 CGAGCAGGCATGACCACAG 61.105 63.158 0.62 0.00 43.14 3.66
3623 3831 1.806247 GCCTTTTGTGTGCACCTTTCC 60.806 52.381 15.69 0.00 0.00 3.13
3658 3866 3.829026 ACAGTACTCAATGCTCTCTCACA 59.171 43.478 0.00 0.00 0.00 3.58
3660 3868 4.097135 GCTACAGTACTCAATGCTCTCTCA 59.903 45.833 0.00 0.00 0.00 3.27
3668 3876 8.352942 TGTCATATGTAGCTACAGTACTCAATG 58.647 37.037 29.05 20.58 39.92 2.82
3669 3877 8.465273 TGTCATATGTAGCTACAGTACTCAAT 57.535 34.615 29.05 13.99 39.92 2.57
3670 3878 7.875327 TGTCATATGTAGCTACAGTACTCAA 57.125 36.000 29.05 11.27 39.92 3.02
3671 3879 7.719633 TCATGTCATATGTAGCTACAGTACTCA 59.280 37.037 29.05 23.07 39.92 3.41
3673 3881 8.465273 TTCATGTCATATGTAGCTACAGTACT 57.535 34.615 29.05 16.38 39.92 2.73
3676 3884 8.860088 TGTATTCATGTCATATGTAGCTACAGT 58.140 33.333 29.05 18.46 39.92 3.55
3677 3885 9.866798 ATGTATTCATGTCATATGTAGCTACAG 57.133 33.333 29.05 17.22 34.73 2.74
3682 3890 8.291740 TGCAAATGTATTCATGTCATATGTAGC 58.708 33.333 1.90 0.00 34.19 3.58
3685 3893 9.872721 TTTTGCAAATGTATTCATGTCATATGT 57.127 25.926 13.65 0.00 34.19 2.29
3712 4441 6.553100 TGATCAAAGTTCATAAAACCCCTTGT 59.447 34.615 0.00 0.00 0.00 3.16
3713 4442 6.991938 TGATCAAAGTTCATAAAACCCCTTG 58.008 36.000 0.00 0.00 0.00 3.61
3766 4525 6.072112 TGTAGTTTGGCTTTGATTTGACTC 57.928 37.500 0.00 0.00 0.00 3.36
3786 4545 6.829229 ATAGCTTACTACGTATGCCATGTA 57.171 37.500 0.00 0.00 39.12 2.29
3787 4546 5.723672 ATAGCTTACTACGTATGCCATGT 57.276 39.130 0.00 0.00 39.12 3.21
3788 4547 7.085052 TCTATAGCTTACTACGTATGCCATG 57.915 40.000 0.00 0.00 39.12 3.66
3789 4548 7.698506 TTCTATAGCTTACTACGTATGCCAT 57.301 36.000 0.00 4.05 39.12 4.40
3790 4549 7.013559 TGTTTCTATAGCTTACTACGTATGCCA 59.986 37.037 0.00 0.00 39.12 4.92
3791 4550 7.365741 TGTTTCTATAGCTTACTACGTATGCC 58.634 38.462 0.00 0.00 39.12 4.40
3792 4551 8.792831 TTGTTTCTATAGCTTACTACGTATGC 57.207 34.615 0.00 0.00 38.78 3.14
3793 4552 8.903723 GCTTGTTTCTATAGCTTACTACGTATG 58.096 37.037 0.00 0.00 32.26 2.39
3794 4553 8.081025 GGCTTGTTTCTATAGCTTACTACGTAT 58.919 37.037 0.00 0.00 35.30 3.06
3810 4569 7.961326 ATACCTATTCATTTGGCTTGTTTCT 57.039 32.000 0.00 0.00 0.00 2.52
3812 4571 8.188139 CGTTATACCTATTCATTTGGCTTGTTT 58.812 33.333 0.00 0.00 0.00 2.83
3815 4574 7.259290 ACGTTATACCTATTCATTTGGCTTG 57.741 36.000 0.00 0.00 0.00 4.01
3831 4590 8.636843 GCACAGCATTCTAGTTATACGTTATAC 58.363 37.037 0.00 0.00 0.00 1.47
3832 4591 7.811236 GGCACAGCATTCTAGTTATACGTTATA 59.189 37.037 0.00 0.00 0.00 0.98
3833 4592 6.645415 GGCACAGCATTCTAGTTATACGTTAT 59.355 38.462 0.00 0.00 0.00 1.89
3834 4593 5.981315 GGCACAGCATTCTAGTTATACGTTA 59.019 40.000 0.00 0.00 0.00 3.18
3836 4595 4.142026 TGGCACAGCATTCTAGTTATACGT 60.142 41.667 0.00 0.00 0.00 3.57
3838 4597 5.360591 AGTGGCACAGCATTCTAGTTATAC 58.639 41.667 21.41 0.00 41.80 1.47
3839 4598 5.614324 AGTGGCACAGCATTCTAGTTATA 57.386 39.130 21.41 0.00 41.80 0.98
3840 4599 4.494091 AGTGGCACAGCATTCTAGTTAT 57.506 40.909 21.41 0.00 41.80 1.89
3841 4600 3.981071 AGTGGCACAGCATTCTAGTTA 57.019 42.857 21.41 0.00 41.80 2.24
3842 4601 2.867109 AGTGGCACAGCATTCTAGTT 57.133 45.000 21.41 0.00 41.80 2.24
3843 4602 3.981071 TTAGTGGCACAGCATTCTAGT 57.019 42.857 21.41 0.00 41.80 2.57
3844 4603 3.624861 CCTTTAGTGGCACAGCATTCTAG 59.375 47.826 21.41 5.17 41.80 2.43
3845 4604 3.263170 TCCTTTAGTGGCACAGCATTCTA 59.737 43.478 21.41 0.00 41.80 2.10
3846 4605 2.040278 TCCTTTAGTGGCACAGCATTCT 59.960 45.455 21.41 0.00 41.80 2.40
3847 4606 2.436417 TCCTTTAGTGGCACAGCATTC 58.564 47.619 21.41 0.00 41.80 2.67
3848 4607 2.558359 GTTCCTTTAGTGGCACAGCATT 59.442 45.455 21.41 0.31 41.80 3.56
3849 4608 2.162681 GTTCCTTTAGTGGCACAGCAT 58.837 47.619 21.41 0.74 41.80 3.79
3850 4609 1.142870 AGTTCCTTTAGTGGCACAGCA 59.857 47.619 21.41 1.01 41.80 4.41
3851 4610 1.897560 AGTTCCTTTAGTGGCACAGC 58.102 50.000 21.41 0.00 41.80 4.40
3852 4611 4.642429 ACTAAGTTCCTTTAGTGGCACAG 58.358 43.478 21.41 8.48 41.17 3.66
3853 4612 4.699925 ACTAAGTTCCTTTAGTGGCACA 57.300 40.909 21.41 2.83 41.17 4.57
3854 4613 6.183360 ACAAAACTAAGTTCCTTTAGTGGCAC 60.183 38.462 10.29 10.29 41.70 5.01
3855 4614 5.889289 ACAAAACTAAGTTCCTTTAGTGGCA 59.111 36.000 0.00 0.00 41.70 4.92
3856 4615 6.206498 CACAAAACTAAGTTCCTTTAGTGGC 58.794 40.000 0.00 0.00 41.70 5.01
3857 4616 6.039382 AGCACAAAACTAAGTTCCTTTAGTGG 59.961 38.462 0.00 0.00 41.70 4.00
3858 4617 7.027778 AGCACAAAACTAAGTTCCTTTAGTG 57.972 36.000 0.00 0.00 41.70 2.74
3859 4618 7.338449 TGAAGCACAAAACTAAGTTCCTTTAGT 59.662 33.333 0.00 0.00 43.77 2.24
3871 4630 7.428282 TTCGAATACATGAAGCACAAAACTA 57.572 32.000 0.00 0.00 0.00 2.24
3892 4651 8.741101 TCCAGTTGATACATTTTTCAAATTCG 57.259 30.769 0.00 0.00 33.90 3.34
3905 4664 8.243426 GCATCTTACAAAAATCCAGTTGATACA 58.757 33.333 0.00 0.00 31.83 2.29
3908 4667 7.472334 AGCATCTTACAAAAATCCAGTTGAT 57.528 32.000 0.00 0.00 34.22 2.57
3910 4669 5.796935 CGAGCATCTTACAAAAATCCAGTTG 59.203 40.000 0.00 0.00 0.00 3.16
3911 4670 5.705441 TCGAGCATCTTACAAAAATCCAGTT 59.295 36.000 0.00 0.00 0.00 3.16
3912 4671 5.245531 TCGAGCATCTTACAAAAATCCAGT 58.754 37.500 0.00 0.00 0.00 4.00
3913 4672 5.728898 GCTCGAGCATCTTACAAAAATCCAG 60.729 44.000 31.91 0.00 41.59 3.86
3937 4816 4.776743 CCACGTCAGAAATCTTGTTCTTG 58.223 43.478 0.00 0.00 35.63 3.02
3946 4825 0.165944 CCAACGCCACGTCAGAAATC 59.834 55.000 0.00 0.00 39.99 2.17
3947 4826 0.534203 ACCAACGCCACGTCAGAAAT 60.534 50.000 0.00 0.00 39.99 2.17
3961 4840 2.004733 GAACGCCCTGTACATACCAAC 58.995 52.381 0.00 0.00 0.00 3.77
4159 5038 3.461773 CCGGCGATGGTGAGGAGT 61.462 66.667 9.30 0.00 0.00 3.85
4220 5099 0.883833 TTGACGTACGGGAGAGAACC 59.116 55.000 21.06 0.00 0.00 3.62
4222 5101 0.524862 GCTTGACGTACGGGAGAGAA 59.475 55.000 21.06 1.88 0.00 2.87
4223 5102 1.310933 GGCTTGACGTACGGGAGAGA 61.311 60.000 21.06 0.00 0.00 3.10
4300 5179 3.760035 GACTTCTGGCTCGGGCGA 61.760 66.667 0.00 0.00 39.81 5.54
4430 5312 3.699894 CTGCTGCTGTCCCTCGGT 61.700 66.667 0.00 0.00 0.00 4.69
4438 5320 3.292936 GGTGCTTGCTGCTGCTGT 61.293 61.111 17.00 0.00 43.37 4.40
4439 5321 3.268965 CTGGTGCTTGCTGCTGCTG 62.269 63.158 17.00 10.41 43.37 4.41
4440 5322 2.984155 CTGGTGCTTGCTGCTGCT 60.984 61.111 17.00 0.00 43.37 4.24
4441 5323 2.979197 CTCTGGTGCTTGCTGCTGC 61.979 63.158 8.89 8.89 43.37 5.25
4442 5324 0.677098 ATCTCTGGTGCTTGCTGCTG 60.677 55.000 0.00 0.00 43.37 4.41
4443 5325 0.392729 GATCTCTGGTGCTTGCTGCT 60.393 55.000 0.00 0.00 43.37 4.24
4450 5332 0.613292 ACCTCACGATCTCTGGTGCT 60.613 55.000 0.00 0.00 34.20 4.40
4453 5335 0.972983 CCCACCTCACGATCTCTGGT 60.973 60.000 0.00 0.00 0.00 4.00
4456 5338 1.608717 GCACCCACCTCACGATCTCT 61.609 60.000 0.00 0.00 0.00 3.10
4477 5359 3.692406 GCGTCCTCGAACCCCTGT 61.692 66.667 0.00 0.00 39.71 4.00
4721 5611 3.266636 TGCAAAGAAAGTGAGACGTTCA 58.733 40.909 0.00 0.00 38.72 3.18
4874 5785 1.152963 GGCCCGTGTTGGATATGCT 60.153 57.895 0.00 0.00 42.00 3.79
4881 5792 1.362355 GTTTGAAGGCCCGTGTTGG 59.638 57.895 0.00 0.00 37.55 3.77
4890 5801 1.526464 CATTTGCGGTTGTTTGAAGGC 59.474 47.619 0.00 0.00 0.00 4.35
4893 5804 2.854777 CGAACATTTGCGGTTGTTTGAA 59.145 40.909 6.80 0.00 38.84 2.69
4915 5827 2.360165 ACTACGTCTCAACAGTTCGGTT 59.640 45.455 0.00 0.00 0.00 4.44
4927 5839 1.438651 TGCATGCCAAACTACGTCTC 58.561 50.000 16.68 0.00 0.00 3.36
4952 5864 5.195940 CAGGTCCATGGACAAATAGTGATT 58.804 41.667 38.83 13.09 46.20 2.57
4956 5868 2.357154 GCCAGGTCCATGGACAAATAGT 60.357 50.000 38.83 17.52 46.20 2.12
4974 5886 2.331893 CGGTGCGAGAATTTGGCCA 61.332 57.895 0.00 0.00 0.00 5.36
4976 5888 0.239879 TTTCGGTGCGAGAATTTGGC 59.760 50.000 0.00 0.00 37.14 4.52
4997 5911 5.636123 TCCCATAAACCTTGCTCAAGTTTA 58.364 37.500 8.60 11.89 36.72 2.01
5041 5981 5.019785 AGGATACGTGGTGGTTTTAGATC 57.980 43.478 0.00 0.00 46.39 2.75
5044 5984 4.393990 GGAAAGGATACGTGGTGGTTTTAG 59.606 45.833 0.00 0.00 46.39 1.85
5060 6000 4.141620 GCAATCCAGACAGATAGGAAAGGA 60.142 45.833 0.00 0.00 34.62 3.36
5072 6012 1.377202 GCCTTCCGCAATCCAGACA 60.377 57.895 0.00 0.00 37.47 3.41
5106 6046 7.162761 TCATACTAATCACCTTCCGTCAAAAA 58.837 34.615 0.00 0.00 0.00 1.94
5131 6076 3.890756 TGTGACTTCTGCCAAACATCAAT 59.109 39.130 0.00 0.00 0.00 2.57
5136 6081 3.698539 TGATTTGTGACTTCTGCCAAACA 59.301 39.130 0.00 0.00 30.37 2.83
5219 6164 3.244875 TGACATGCTTCCTTCTAGCCAAA 60.245 43.478 0.00 0.00 37.85 3.28
5220 6165 2.305635 TGACATGCTTCCTTCTAGCCAA 59.694 45.455 0.00 0.00 37.85 4.52
5239 6184 4.141937 CCGACTGGATTGACTTAAGGATGA 60.142 45.833 7.53 0.00 37.49 2.92
5319 6264 4.389077 GTCATCGAAGATTTTGACGACCTT 59.611 41.667 0.00 0.00 45.12 3.50
5339 6292 8.141298 TGAAACTACCCTATTTCTACATGTCA 57.859 34.615 0.00 0.00 36.09 3.58
5344 6297 8.627403 CGTAGATGAAACTACCCTATTTCTACA 58.373 37.037 0.00 0.00 39.39 2.74
5410 6371 9.696917 GTAATCAATGGAAAGAAAATTGACTGT 57.303 29.630 0.00 0.00 41.67 3.55
5424 6385 7.439356 CGAATCTTAGAGCAGTAATCAATGGAA 59.561 37.037 0.00 0.00 0.00 3.53
5428 6389 6.201806 GCACGAATCTTAGAGCAGTAATCAAT 59.798 38.462 0.00 0.00 0.00 2.57


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.