Multiple sequence alignment - TraesCS4B01G074600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G074600 chr4B 100.000 4575 0 0 610 5184 70252428 70257002 0.000000e+00 8449.0
1 TraesCS4B01G074600 chr4B 100.000 325 0 0 1 325 70251819 70252143 8.170000e-168 601.0
2 TraesCS4B01G074600 chr4B 100.000 228 0 0 5469 5696 70257287 70257514 6.820000e-114 422.0
3 TraesCS4B01G074600 chr4B 100.000 142 0 0 1571 1712 304887937 304888078 4.380000e-66 263.0
4 TraesCS4B01G074600 chr4B 88.991 109 7 4 798 906 460330433 460330536 4.630000e-26 130.0
5 TraesCS4B01G074600 chr4D 95.310 3369 97 19 1710 5052 47850561 47853894 0.000000e+00 5289.0
6 TraesCS4B01G074600 chr4D 94.290 683 28 8 898 1572 47849900 47850579 0.000000e+00 1035.0
7 TraesCS4B01G074600 chr4D 92.095 253 20 0 72 324 47849401 47849653 1.950000e-94 357.0
8 TraesCS4B01G074600 chr4D 94.964 139 6 1 5046 5184 47853947 47854084 3.460000e-52 217.0
9 TraesCS4B01G074600 chr4A 94.468 1663 67 9 3395 5049 549880481 549878836 0.000000e+00 2538.0
10 TraesCS4B01G074600 chr4A 94.163 1285 47 10 2132 3398 549881835 549880561 0.000000e+00 1932.0
11 TraesCS4B01G074600 chr4A 92.758 649 36 6 928 1572 549882816 549882175 0.000000e+00 928.0
12 TraesCS4B01G074600 chr4A 94.783 345 15 1 1758 2099 549882176 549881832 8.400000e-148 534.0
13 TraesCS4B01G074600 chr4A 85.827 254 35 1 72 324 549887933 549887680 9.410000e-68 268.0
14 TraesCS4B01G074600 chr4A 98.649 148 1 1 1571 1718 168769900 168770046 1.570000e-65 261.0
15 TraesCS4B01G074600 chr4A 96.403 139 4 1 5046 5184 549878777 549878640 1.600000e-55 228.0
16 TraesCS4B01G074600 chr7B 98.684 152 1 1 1571 1721 384200269 384200118 9.410000e-68 268.0
17 TraesCS4B01G074600 chrUn 100.000 143 0 0 1571 1713 284001699 284001557 1.220000e-66 265.0
18 TraesCS4B01G074600 chr7A 100.000 143 0 0 1571 1713 1755443 1755585 1.220000e-66 265.0
19 TraesCS4B01G074600 chr7A 90.385 52 5 0 4805 4856 120981900 120981951 1.020000e-07 69.4
20 TraesCS4B01G074600 chr5B 100.000 143 0 0 1571 1713 163273224 163273366 1.220000e-66 265.0
21 TraesCS4B01G074600 chr5B 96.296 162 3 3 1559 1719 635092963 635092804 4.380000e-66 263.0
22 TraesCS4B01G074600 chr5B 95.652 46 2 0 4812 4857 75218475 75218430 2.200000e-09 75.0
23 TraesCS4B01G074600 chr1B 100.000 143 0 0 1571 1713 604039813 604039671 1.220000e-66 265.0
24 TraesCS4B01G074600 chr1B 81.013 158 22 7 2126 2279 222304083 222303930 1.000000e-22 119.0
25 TraesCS4B01G074600 chr2D 98.601 143 2 0 1571 1713 150627458 150627600 2.630000e-63 254.0
26 TraesCS4B01G074600 chr2D 87.273 110 12 2 794 903 586772062 586772169 2.150000e-24 124.0
27 TraesCS4B01G074600 chr2D 97.778 45 0 1 4809 4852 590238984 590238940 6.120000e-10 76.8
28 TraesCS4B01G074600 chr6D 91.071 112 8 1 794 905 79857104 79857213 3.560000e-32 150.0
29 TraesCS4B01G074600 chr5A 90.351 114 11 0 793 906 573562508 573562621 3.560000e-32 150.0
30 TraesCS4B01G074600 chr5A 87.619 105 11 1 800 904 602413608 602413506 2.790000e-23 121.0
31 TraesCS4B01G074600 chr1D 89.344 122 9 3 792 912 3303487 3303369 3.560000e-32 150.0
32 TraesCS4B01G074600 chr1D 80.556 180 25 9 2105 2279 158104769 158104943 4.630000e-26 130.0
33 TraesCS4B01G074600 chr6B 90.654 107 8 1 800 906 520852423 520852319 2.140000e-29 141.0
34 TraesCS4B01G074600 chr1A 80.447 179 27 7 2105 2279 224812532 224812358 4.630000e-26 130.0
35 TraesCS4B01G074600 chr1A 86.726 113 11 4 800 912 592146497 592146389 7.750000e-24 122.0
36 TraesCS4B01G074600 chr3B 88.350 103 10 1 801 903 145259087 145259187 7.750000e-24 122.0
37 TraesCS4B01G074600 chr3B 84.932 73 8 3 4812 4882 25431131 25431202 2.850000e-08 71.3
38 TraesCS4B01G074600 chr5D 95.745 47 0 2 4815 4861 56125640 56125684 2.200000e-09 75.0
39 TraesCS4B01G074600 chr5D 95.652 46 2 0 4812 4857 69354265 69354220 2.200000e-09 75.0
40 TraesCS4B01G074600 chr2A 97.727 44 0 1 4814 4857 733925427 733925469 2.200000e-09 75.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G074600 chr4B 70251819 70257514 5695 False 3157.333333 8449 100.00000 1 5696 3 chr4B.!!$F3 5695
1 TraesCS4B01G074600 chr4D 47849401 47854084 4683 False 1724.500000 5289 94.16475 72 5184 4 chr4D.!!$F1 5112
2 TraesCS4B01G074600 chr4A 549878640 549882816 4176 True 1232.000000 2538 94.51500 928 5184 5 chr4A.!!$R2 4256

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
744 753 0.041312 CAAACGACGACCAAGCCAAG 60.041 55.000 0.00 0.00 0.00 3.61 F
1591 1643 0.036164 CCATGAGGTCACGGGTTCAA 59.964 55.000 0.00 0.00 0.00 2.69 F
1600 1652 0.107831 CACGGGTTCAAGTCCTGGAA 59.892 55.000 0.00 0.00 35.79 3.53 F
1647 1699 0.177141 GGCTGCGTACAATAGACCCA 59.823 55.000 0.00 0.00 0.00 4.51 F
1664 1716 0.605589 CCAAAGTGGTCGGACCCTTC 60.606 60.000 23.81 13.97 37.50 3.46 F
1665 1717 0.605589 CAAAGTGGTCGGACCCTTCC 60.606 60.000 23.81 9.51 37.50 3.46 F
1701 1753 1.153086 GGGAGCTACATGCACTGGG 60.153 63.158 0.00 0.00 45.94 4.45 F
1703 1755 1.821332 GAGCTACATGCACTGGGGC 60.821 63.158 0.00 0.00 45.94 5.80 F
2502 2579 1.948834 CGCCCATGAAATAGACATGCA 59.051 47.619 0.00 0.00 42.31 3.96 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1701 1753 0.035439 TGCAGTACTAAAGGGCAGCC 60.035 55.000 1.26 1.26 0.00 4.85 R
2918 2996 0.908910 ACCGTGGATGCTTGACCATA 59.091 50.000 0.00 0.00 38.48 2.74 R
3519 3682 3.724257 GCACTTCGTAGTTGTTTTGCTTC 59.276 43.478 0.00 0.00 30.26 3.86 R
3534 3697 5.827568 AATTTGTAAAAGCATGCACTTCG 57.172 34.783 21.98 0.00 0.00 3.79 R
3598 3761 5.986135 ACATATCTGAGGAACGAGTAATTGC 59.014 40.000 0.00 0.00 0.00 3.56 R
3772 3935 8.292448 GCATAACGAAATGGAGTTCATATGAAT 58.708 33.333 20.65 10.17 36.33 2.57 R
4012 4185 3.343617 TGGCTAAACTATTGCCTGTCAC 58.656 45.455 0.00 0.00 46.23 3.67 R
4016 4189 5.105392 TCCAAAATGGCTAAACTATTGCCTG 60.105 40.000 0.00 0.00 46.23 4.85 R
4801 4977 2.499289 AGAGGGAGTACAATGCTGTGAG 59.501 50.000 0.00 0.00 36.96 3.51 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
29 30 3.685435 CCCAACAGGCACATCCAC 58.315 61.111 0.00 0.00 37.29 4.02
30 31 1.978617 CCCAACAGGCACATCCACC 60.979 63.158 0.00 0.00 37.29 4.61
31 32 1.228521 CCAACAGGCACATCCACCA 60.229 57.895 0.00 0.00 37.29 4.17
32 33 0.612732 CCAACAGGCACATCCACCAT 60.613 55.000 0.00 0.00 37.29 3.55
33 34 1.340893 CCAACAGGCACATCCACCATA 60.341 52.381 0.00 0.00 37.29 2.74
34 35 2.019249 CAACAGGCACATCCACCATAG 58.981 52.381 0.00 0.00 37.29 2.23
35 36 0.107017 ACAGGCACATCCACCATAGC 60.107 55.000 0.00 0.00 37.29 2.97
36 37 0.820891 CAGGCACATCCACCATAGCC 60.821 60.000 0.00 0.00 42.31 3.93
37 38 1.529244 GGCACATCCACCATAGCCC 60.529 63.158 0.00 0.00 36.17 5.19
38 39 1.533711 GCACATCCACCATAGCCCT 59.466 57.895 0.00 0.00 0.00 5.19
39 40 0.106519 GCACATCCACCATAGCCCTT 60.107 55.000 0.00 0.00 0.00 3.95
40 41 1.683943 CACATCCACCATAGCCCTTG 58.316 55.000 0.00 0.00 0.00 3.61
41 42 0.552848 ACATCCACCATAGCCCTTGG 59.447 55.000 0.00 0.00 40.26 3.61
43 44 0.846693 ATCCACCATAGCCCTTGGTC 59.153 55.000 0.06 0.00 45.71 4.02
44 45 1.153168 CCACCATAGCCCTTGGTCG 60.153 63.158 0.06 0.00 45.71 4.79
45 46 1.819632 CACCATAGCCCTTGGTCGC 60.820 63.158 0.06 0.00 45.71 5.19
46 47 2.203209 CCATAGCCCTTGGTCGCC 60.203 66.667 0.00 0.00 0.00 5.54
47 48 2.588877 CATAGCCCTTGGTCGCCG 60.589 66.667 0.00 0.00 0.00 6.46
48 49 4.547367 ATAGCCCTTGGTCGCCGC 62.547 66.667 0.00 0.00 0.00 6.53
61 62 2.511600 GCCGCACGAGTAGCCAAT 60.512 61.111 0.00 0.00 0.00 3.16
62 63 2.813179 GCCGCACGAGTAGCCAATG 61.813 63.158 0.00 0.00 0.00 2.82
63 64 1.153647 CCGCACGAGTAGCCAATGA 60.154 57.895 0.00 0.00 0.00 2.57
64 65 1.421410 CCGCACGAGTAGCCAATGAC 61.421 60.000 0.00 0.00 0.00 3.06
65 66 1.742900 CGCACGAGTAGCCAATGACG 61.743 60.000 0.00 0.00 0.00 4.35
66 67 0.457853 GCACGAGTAGCCAATGACGA 60.458 55.000 0.00 0.00 0.00 4.20
67 68 1.990799 CACGAGTAGCCAATGACGAA 58.009 50.000 0.00 0.00 0.00 3.85
68 69 2.540515 CACGAGTAGCCAATGACGAAT 58.459 47.619 0.00 0.00 0.00 3.34
69 70 2.535984 CACGAGTAGCCAATGACGAATC 59.464 50.000 0.00 0.00 0.00 2.52
70 71 2.128035 CGAGTAGCCAATGACGAATCC 58.872 52.381 0.00 0.00 0.00 3.01
90 91 2.173382 CACGCGCTACAACCTTGC 59.827 61.111 5.73 0.00 0.00 4.01
100 101 3.884774 AACCTTGCCGCCCTCACA 61.885 61.111 0.00 0.00 0.00 3.58
178 179 4.309950 AACCACCTCGTCGCACCC 62.310 66.667 0.00 0.00 0.00 4.61
217 218 2.343758 GACTCCAACGCAGCCTGA 59.656 61.111 0.00 0.00 0.00 3.86
219 220 2.435586 CTCCAACGCAGCCTGAGG 60.436 66.667 0.00 0.00 0.00 3.86
238 239 2.045438 CGCCACCCAGCATACCAA 60.045 61.111 0.00 0.00 0.00 3.67
241 242 0.897863 GCCACCCAGCATACCAACAA 60.898 55.000 0.00 0.00 0.00 2.83
255 256 0.318614 CAACAATGGACCAACACCGC 60.319 55.000 0.00 0.00 0.00 5.68
256 257 1.460273 AACAATGGACCAACACCGCC 61.460 55.000 0.00 0.00 0.00 6.13
642 643 2.091541 GCTAATGCAGCCTACCAAACA 58.908 47.619 0.00 0.00 45.23 2.83
645 646 4.338118 GCTAATGCAGCCTACCAAACAATA 59.662 41.667 0.00 0.00 45.23 1.90
678 679 8.043113 ACATATTTTCAGTCTGCATCTACTCAA 58.957 33.333 0.00 0.00 0.00 3.02
679 680 9.053840 CATATTTTCAGTCTGCATCTACTCAAT 57.946 33.333 0.00 0.00 0.00 2.57
681 682 5.929058 TTCAGTCTGCATCTACTCAATCT 57.071 39.130 0.00 0.00 0.00 2.40
687 688 5.519566 GTCTGCATCTACTCAATCTGTCTTG 59.480 44.000 0.00 0.00 0.00 3.02
730 739 5.395325 AAGACGATGCAAGATATCAAACG 57.605 39.130 5.32 4.67 0.00 3.60
731 740 4.682787 AGACGATGCAAGATATCAAACGA 58.317 39.130 5.32 0.00 0.00 3.85
732 741 4.504461 AGACGATGCAAGATATCAAACGAC 59.496 41.667 5.32 3.09 0.00 4.34
733 742 3.242944 ACGATGCAAGATATCAAACGACG 59.757 43.478 5.32 6.63 0.00 5.12
734 743 3.485743 CGATGCAAGATATCAAACGACGA 59.514 43.478 0.00 0.00 0.00 4.20
736 745 2.927477 TGCAAGATATCAAACGACGACC 59.073 45.455 0.00 0.00 0.00 4.79
740 749 3.187700 AGATATCAAACGACGACCAAGC 58.812 45.455 0.00 0.00 0.00 4.01
741 750 1.717194 TATCAAACGACGACCAAGCC 58.283 50.000 0.00 0.00 0.00 4.35
742 751 0.250124 ATCAAACGACGACCAAGCCA 60.250 50.000 0.00 0.00 0.00 4.75
743 752 0.462225 TCAAACGACGACCAAGCCAA 60.462 50.000 0.00 0.00 0.00 4.52
744 753 0.041312 CAAACGACGACCAAGCCAAG 60.041 55.000 0.00 0.00 0.00 3.61
746 755 2.030562 CGACGACCAAGCCAAGGT 59.969 61.111 0.00 0.00 43.46 3.50
747 756 1.290955 CGACGACCAAGCCAAGGTA 59.709 57.895 0.00 0.00 40.09 3.08
748 757 0.736325 CGACGACCAAGCCAAGGTAG 60.736 60.000 0.00 0.00 40.09 3.18
749 758 1.003718 ACGACCAAGCCAAGGTAGC 60.004 57.895 0.00 0.00 40.09 3.58
750 759 1.003839 CGACCAAGCCAAGGTAGCA 60.004 57.895 0.00 0.00 40.09 3.49
807 855 8.853077 AATTCAACATGTATTCTCTCTGTTCA 57.147 30.769 0.00 0.00 0.00 3.18
808 856 7.658179 TTCAACATGTATTCTCTCTGTTCAC 57.342 36.000 0.00 0.00 0.00 3.18
809 857 6.997655 TCAACATGTATTCTCTCTGTTCACT 58.002 36.000 0.00 0.00 0.00 3.41
810 858 7.445121 TCAACATGTATTCTCTCTGTTCACTT 58.555 34.615 0.00 0.00 0.00 3.16
811 859 7.933577 TCAACATGTATTCTCTCTGTTCACTTT 59.066 33.333 0.00 0.00 0.00 2.66
812 860 8.562892 CAACATGTATTCTCTCTGTTCACTTTT 58.437 33.333 0.00 0.00 0.00 2.27
813 861 8.092521 ACATGTATTCTCTCTGTTCACTTTTG 57.907 34.615 0.00 0.00 0.00 2.44
814 862 7.716998 ACATGTATTCTCTCTGTTCACTTTTGT 59.283 33.333 0.00 0.00 0.00 2.83
815 863 9.208022 CATGTATTCTCTCTGTTCACTTTTGTA 57.792 33.333 0.00 0.00 0.00 2.41
816 864 8.818141 TGTATTCTCTCTGTTCACTTTTGTAG 57.182 34.615 0.00 0.00 0.00 2.74
817 865 7.872993 TGTATTCTCTCTGTTCACTTTTGTAGG 59.127 37.037 0.00 0.00 0.00 3.18
818 866 6.479972 TTCTCTCTGTTCACTTTTGTAGGA 57.520 37.500 0.00 0.00 0.00 2.94
819 867 5.844004 TCTCTCTGTTCACTTTTGTAGGAC 58.156 41.667 0.00 0.00 0.00 3.85
820 868 4.617959 TCTCTGTTCACTTTTGTAGGACG 58.382 43.478 0.00 0.00 0.00 4.79
821 869 4.098960 TCTCTGTTCACTTTTGTAGGACGT 59.901 41.667 0.00 0.00 0.00 4.34
822 870 4.761975 TCTGTTCACTTTTGTAGGACGTT 58.238 39.130 0.00 0.00 0.00 3.99
823 871 5.180271 TCTGTTCACTTTTGTAGGACGTTT 58.820 37.500 0.00 0.00 0.00 3.60
824 872 5.644636 TCTGTTCACTTTTGTAGGACGTTTT 59.355 36.000 0.00 0.00 0.00 2.43
825 873 6.817641 TCTGTTCACTTTTGTAGGACGTTTTA 59.182 34.615 0.00 0.00 0.00 1.52
826 874 7.007313 TGTTCACTTTTGTAGGACGTTTTAG 57.993 36.000 0.00 0.00 0.00 1.85
827 875 6.817641 TGTTCACTTTTGTAGGACGTTTTAGA 59.182 34.615 0.00 0.00 0.00 2.10
828 876 6.833342 TCACTTTTGTAGGACGTTTTAGAC 57.167 37.500 0.00 0.00 0.00 2.59
829 877 6.339730 TCACTTTTGTAGGACGTTTTAGACA 58.660 36.000 0.00 0.00 0.00 3.41
830 878 6.987992 TCACTTTTGTAGGACGTTTTAGACAT 59.012 34.615 0.00 0.00 0.00 3.06
831 879 7.496591 TCACTTTTGTAGGACGTTTTAGACATT 59.503 33.333 0.00 0.00 0.00 2.71
832 880 8.126700 CACTTTTGTAGGACGTTTTAGACATTT 58.873 33.333 0.00 0.00 0.00 2.32
833 881 9.328845 ACTTTTGTAGGACGTTTTAGACATTTA 57.671 29.630 0.00 0.00 0.00 1.40
841 889 9.367444 AGGACGTTTTAGACATTTATAAGACAG 57.633 33.333 0.00 0.00 0.00 3.51
842 890 8.114905 GGACGTTTTAGACATTTATAAGACAGC 58.885 37.037 0.00 0.00 0.00 4.40
843 891 8.542497 ACGTTTTAGACATTTATAAGACAGCA 57.458 30.769 0.00 0.00 0.00 4.41
844 892 8.440833 ACGTTTTAGACATTTATAAGACAGCAC 58.559 33.333 0.00 0.00 0.00 4.40
845 893 7.903431 CGTTTTAGACATTTATAAGACAGCACC 59.097 37.037 0.00 0.00 0.00 5.01
846 894 8.947115 GTTTTAGACATTTATAAGACAGCACCT 58.053 33.333 0.00 0.00 0.00 4.00
851 899 8.947115 AGACATTTATAAGACAGCACCTAAAAC 58.053 33.333 0.00 0.00 0.00 2.43
852 900 8.630054 ACATTTATAAGACAGCACCTAAAACA 57.370 30.769 0.00 0.00 0.00 2.83
853 901 8.730680 ACATTTATAAGACAGCACCTAAAACAG 58.269 33.333 0.00 0.00 0.00 3.16
854 902 8.730680 CATTTATAAGACAGCACCTAAAACAGT 58.269 33.333 0.00 0.00 0.00 3.55
855 903 8.685838 TTTATAAGACAGCACCTAAAACAGTT 57.314 30.769 0.00 0.00 0.00 3.16
856 904 8.685838 TTATAAGACAGCACCTAAAACAGTTT 57.314 30.769 0.00 0.00 0.00 2.66
857 905 9.781633 TTATAAGACAGCACCTAAAACAGTTTA 57.218 29.630 0.00 0.00 0.00 2.01
858 906 8.685838 ATAAGACAGCACCTAAAACAGTTTAA 57.314 30.769 0.00 0.00 0.00 1.52
859 907 7.582667 AAGACAGCACCTAAAACAGTTTAAT 57.417 32.000 0.00 0.00 0.00 1.40
860 908 7.582667 AGACAGCACCTAAAACAGTTTAATT 57.417 32.000 0.00 0.00 0.00 1.40
861 909 8.007405 AGACAGCACCTAAAACAGTTTAATTT 57.993 30.769 0.00 0.00 0.00 1.82
862 910 8.135529 AGACAGCACCTAAAACAGTTTAATTTC 58.864 33.333 0.00 0.00 0.00 2.17
863 911 7.777095 ACAGCACCTAAAACAGTTTAATTTCA 58.223 30.769 0.00 0.00 0.00 2.69
864 912 7.920682 ACAGCACCTAAAACAGTTTAATTTCAG 59.079 33.333 0.00 0.00 0.00 3.02
865 913 6.923508 AGCACCTAAAACAGTTTAATTTCAGC 59.076 34.615 0.00 0.00 0.00 4.26
866 914 6.923508 GCACCTAAAACAGTTTAATTTCAGCT 59.076 34.615 0.00 0.00 0.00 4.24
867 915 7.096065 GCACCTAAAACAGTTTAATTTCAGCTG 60.096 37.037 7.63 7.63 0.00 4.24
868 916 7.920682 CACCTAAAACAGTTTAATTTCAGCTGT 59.079 33.333 14.67 0.00 41.51 4.40
876 924 8.803799 ACAGTTTAATTTCAGCTGTTTTAAACG 58.196 29.630 29.50 27.06 42.92 3.60
877 925 9.015577 CAGTTTAATTTCAGCTGTTTTAAACGA 57.984 29.630 29.50 12.55 42.92 3.85
878 926 9.016623 AGTTTAATTTCAGCTGTTTTAAACGAC 57.983 29.630 29.50 20.03 42.92 4.34
879 927 9.016623 GTTTAATTTCAGCTGTTTTAAACGACT 57.983 29.630 26.41 0.35 34.78 4.18
880 928 9.575783 TTTAATTTCAGCTGTTTTAAACGACTT 57.424 25.926 14.67 1.16 0.00 3.01
882 930 8.556517 AATTTCAGCTGTTTTAAACGACTTAC 57.443 30.769 14.67 0.00 0.00 2.34
883 931 6.665474 TTCAGCTGTTTTAAACGACTTACA 57.335 33.333 14.67 0.00 0.00 2.41
884 932 6.665474 TCAGCTGTTTTAAACGACTTACAA 57.335 33.333 14.67 0.00 0.00 2.41
885 933 7.074507 TCAGCTGTTTTAAACGACTTACAAA 57.925 32.000 14.67 0.00 0.00 2.83
886 934 7.528307 TCAGCTGTTTTAAACGACTTACAAAA 58.472 30.769 14.67 0.00 0.00 2.44
887 935 8.021973 TCAGCTGTTTTAAACGACTTACAAAAA 58.978 29.630 14.67 0.00 0.00 1.94
888 936 8.803799 CAGCTGTTTTAAACGACTTACAAAAAT 58.196 29.630 5.25 0.00 0.00 1.82
889 937 8.803799 AGCTGTTTTAAACGACTTACAAAAATG 58.196 29.630 3.28 0.00 0.00 2.32
890 938 8.800031 GCTGTTTTAAACGACTTACAAAAATGA 58.200 29.630 3.28 0.00 0.00 2.57
986 1036 1.131420 CTGTTGCTCGCTTCGCTTC 59.869 57.895 0.00 0.00 0.00 3.86
987 1037 1.287730 CTGTTGCTCGCTTCGCTTCT 61.288 55.000 0.00 0.00 0.00 2.85
988 1038 0.880278 TGTTGCTCGCTTCGCTTCTT 60.880 50.000 0.00 0.00 0.00 2.52
989 1039 0.451792 GTTGCTCGCTTCGCTTCTTG 60.452 55.000 0.00 0.00 0.00 3.02
990 1040 1.568612 TTGCTCGCTTCGCTTCTTGG 61.569 55.000 0.00 0.00 0.00 3.61
991 1041 2.744768 GCTCGCTTCGCTTCTTGGG 61.745 63.158 0.00 0.00 0.00 4.12
1015 1067 1.558756 CCTTGATGGTCTCCTTGCTCT 59.441 52.381 0.00 0.00 0.00 4.09
1028 1080 4.863925 GCTCTCTCGCGCACCCTC 62.864 72.222 8.75 0.00 0.00 4.30
1077 1129 3.394836 GCCTCCACCTCCTCGCTT 61.395 66.667 0.00 0.00 0.00 4.68
1086 1138 2.989253 TCCTCGCTTCGACTGCCA 60.989 61.111 4.30 0.00 0.00 4.92
1160 1212 2.046217 GTCCCGCCCAAGGAAGAC 60.046 66.667 0.00 0.00 34.43 3.01
1239 1291 2.133858 TCCCCTCCTTCTTCCAGTTT 57.866 50.000 0.00 0.00 0.00 2.66
1280 1332 6.158695 TCCTTATTCCTCAGCTTGGTTTATCT 59.841 38.462 2.79 0.00 0.00 1.98
1289 1341 6.763355 TCAGCTTGGTTTATCTCTATCCATC 58.237 40.000 0.00 0.00 0.00 3.51
1293 1345 7.459125 AGCTTGGTTTATCTCTATCCATCCATA 59.541 37.037 0.00 0.00 0.00 2.74
1297 1349 8.762645 TGGTTTATCTCTATCCATCCATATGTC 58.237 37.037 1.24 0.00 0.00 3.06
1420 1472 7.022384 CGCGTGGGTGTTTTTAGATATTTTTA 58.978 34.615 0.00 0.00 0.00 1.52
1573 1625 9.819267 AAGTTATTTAGTACTGCAGAATAGACC 57.181 33.333 23.35 5.75 0.00 3.85
1574 1626 8.978472 AGTTATTTAGTACTGCAGAATAGACCA 58.022 33.333 23.35 0.00 0.00 4.02
1575 1627 9.765795 GTTATTTAGTACTGCAGAATAGACCAT 57.234 33.333 23.35 5.12 0.00 3.55
1576 1628 9.764363 TTATTTAGTACTGCAGAATAGACCATG 57.236 33.333 23.35 0.00 0.00 3.66
1577 1629 7.418337 TTTAGTACTGCAGAATAGACCATGA 57.582 36.000 23.35 0.00 0.00 3.07
1578 1630 5.528043 AGTACTGCAGAATAGACCATGAG 57.472 43.478 23.35 0.00 0.00 2.90
1579 1631 3.834489 ACTGCAGAATAGACCATGAGG 57.166 47.619 23.35 0.00 42.21 3.86
1589 1641 4.617875 CCATGAGGTCACGGGTTC 57.382 61.111 0.00 0.00 0.00 3.62
1590 1642 1.676968 CCATGAGGTCACGGGTTCA 59.323 57.895 0.00 0.00 0.00 3.18
1591 1643 0.036164 CCATGAGGTCACGGGTTCAA 59.964 55.000 0.00 0.00 0.00 2.69
1592 1644 1.442769 CATGAGGTCACGGGTTCAAG 58.557 55.000 0.00 0.00 0.00 3.02
1593 1645 1.056660 ATGAGGTCACGGGTTCAAGT 58.943 50.000 0.00 0.00 0.00 3.16
1594 1646 0.391597 TGAGGTCACGGGTTCAAGTC 59.608 55.000 0.00 0.00 0.00 3.01
1595 1647 0.320508 GAGGTCACGGGTTCAAGTCC 60.321 60.000 0.00 0.00 0.00 3.85
1596 1648 0.763223 AGGTCACGGGTTCAAGTCCT 60.763 55.000 0.00 0.00 0.00 3.85
1597 1649 0.602905 GGTCACGGGTTCAAGTCCTG 60.603 60.000 0.00 0.00 37.36 3.86
1598 1650 0.602905 GTCACGGGTTCAAGTCCTGG 60.603 60.000 0.00 0.00 35.79 4.45
1599 1651 0.761323 TCACGGGTTCAAGTCCTGGA 60.761 55.000 0.00 0.00 35.79 3.86
1600 1652 0.107831 CACGGGTTCAAGTCCTGGAA 59.892 55.000 0.00 0.00 35.79 3.53
1601 1653 0.841289 ACGGGTTCAAGTCCTGGAAA 59.159 50.000 0.00 0.00 35.79 3.13
1602 1654 1.235724 CGGGTTCAAGTCCTGGAAAC 58.764 55.000 0.00 0.00 0.00 2.78
1603 1655 1.476110 CGGGTTCAAGTCCTGGAAACA 60.476 52.381 0.00 0.00 32.36 2.83
1617 1669 4.431416 TGGAAACAGCCTCTTACAGAAA 57.569 40.909 0.00 0.00 35.01 2.52
1618 1670 4.985538 TGGAAACAGCCTCTTACAGAAAT 58.014 39.130 0.00 0.00 35.01 2.17
1619 1671 4.761739 TGGAAACAGCCTCTTACAGAAATG 59.238 41.667 0.00 0.00 35.01 2.32
1620 1672 4.762251 GGAAACAGCCTCTTACAGAAATGT 59.238 41.667 0.00 0.00 0.00 2.71
1621 1673 5.938125 GGAAACAGCCTCTTACAGAAATGTA 59.062 40.000 0.00 0.00 0.00 2.29
1622 1674 6.092807 GGAAACAGCCTCTTACAGAAATGTAG 59.907 42.308 0.00 0.00 0.00 2.74
1623 1675 5.091261 ACAGCCTCTTACAGAAATGTAGG 57.909 43.478 0.00 0.00 0.00 3.18
1624 1676 4.080863 ACAGCCTCTTACAGAAATGTAGGG 60.081 45.833 0.00 0.66 0.00 3.53
1625 1677 4.162320 CAGCCTCTTACAGAAATGTAGGGA 59.838 45.833 0.00 0.00 0.00 4.20
1626 1678 4.783227 AGCCTCTTACAGAAATGTAGGGAA 59.217 41.667 0.00 0.00 0.00 3.97
1627 1679 5.250774 AGCCTCTTACAGAAATGTAGGGAAA 59.749 40.000 0.00 0.00 0.00 3.13
1628 1680 5.586643 GCCTCTTACAGAAATGTAGGGAAAG 59.413 44.000 0.00 0.00 0.00 2.62
1629 1681 6.116126 CCTCTTACAGAAATGTAGGGAAAGG 58.884 44.000 0.00 0.00 0.00 3.11
1630 1682 5.497474 TCTTACAGAAATGTAGGGAAAGGC 58.503 41.667 0.00 0.00 0.00 4.35
1631 1683 5.250774 TCTTACAGAAATGTAGGGAAAGGCT 59.749 40.000 0.00 0.00 0.00 4.58
1632 1684 3.690460 ACAGAAATGTAGGGAAAGGCTG 58.310 45.455 0.00 0.00 0.00 4.85
1633 1685 2.424956 CAGAAATGTAGGGAAAGGCTGC 59.575 50.000 0.00 0.00 0.00 5.25
1634 1686 1.401905 GAAATGTAGGGAAAGGCTGCG 59.598 52.381 0.00 0.00 0.00 5.18
1635 1687 0.328258 AATGTAGGGAAAGGCTGCGT 59.672 50.000 0.00 0.00 0.00 5.24
1636 1688 1.200519 ATGTAGGGAAAGGCTGCGTA 58.799 50.000 0.00 0.00 0.00 4.42
1637 1689 0.248289 TGTAGGGAAAGGCTGCGTAC 59.752 55.000 0.00 0.00 37.28 3.67
1638 1690 0.248289 GTAGGGAAAGGCTGCGTACA 59.752 55.000 0.00 0.00 36.89 2.90
1639 1691 0.978151 TAGGGAAAGGCTGCGTACAA 59.022 50.000 0.00 0.00 0.00 2.41
1640 1692 0.328258 AGGGAAAGGCTGCGTACAAT 59.672 50.000 0.00 0.00 0.00 2.71
1641 1693 1.557832 AGGGAAAGGCTGCGTACAATA 59.442 47.619 0.00 0.00 0.00 1.90
1642 1694 1.940613 GGGAAAGGCTGCGTACAATAG 59.059 52.381 0.00 0.00 0.00 1.73
1643 1695 2.419574 GGGAAAGGCTGCGTACAATAGA 60.420 50.000 0.00 0.00 0.00 1.98
1644 1696 2.608090 GGAAAGGCTGCGTACAATAGAC 59.392 50.000 0.00 0.00 0.00 2.59
1645 1697 2.311124 AAGGCTGCGTACAATAGACC 57.689 50.000 0.00 0.00 0.00 3.85
1646 1698 0.464452 AGGCTGCGTACAATAGACCC 59.536 55.000 0.00 0.00 0.00 4.46
1647 1699 0.177141 GGCTGCGTACAATAGACCCA 59.823 55.000 0.00 0.00 0.00 4.51
1648 1700 1.406341 GGCTGCGTACAATAGACCCAA 60.406 52.381 0.00 0.00 0.00 4.12
1649 1701 2.352388 GCTGCGTACAATAGACCCAAA 58.648 47.619 0.00 0.00 0.00 3.28
1650 1702 2.351726 GCTGCGTACAATAGACCCAAAG 59.648 50.000 0.00 0.00 0.00 2.77
1651 1703 3.596214 CTGCGTACAATAGACCCAAAGT 58.404 45.455 0.00 0.00 0.00 2.66
1652 1704 3.331150 TGCGTACAATAGACCCAAAGTG 58.669 45.455 0.00 0.00 0.00 3.16
1653 1705 2.676342 GCGTACAATAGACCCAAAGTGG 59.324 50.000 0.00 0.00 37.25 4.00
1654 1706 3.867216 GCGTACAATAGACCCAAAGTGGT 60.867 47.826 0.00 0.00 42.79 4.16
1659 1711 4.373771 GACCCAAAGTGGTCGGAC 57.626 61.111 0.00 0.00 44.98 4.79
1660 1712 1.302271 GACCCAAAGTGGTCGGACC 60.302 63.158 20.36 20.36 44.98 4.46
1661 1713 2.033602 CCCAAAGTGGTCGGACCC 59.966 66.667 23.81 14.91 37.50 4.46
1662 1714 2.526046 CCCAAAGTGGTCGGACCCT 61.526 63.158 23.81 16.82 37.50 4.34
1663 1715 1.454539 CCAAAGTGGTCGGACCCTT 59.545 57.895 23.81 21.08 37.50 3.95
1664 1716 0.605589 CCAAAGTGGTCGGACCCTTC 60.606 60.000 23.81 13.97 37.50 3.46
1665 1717 0.605589 CAAAGTGGTCGGACCCTTCC 60.606 60.000 23.81 9.51 37.50 3.46
1666 1718 1.775934 AAAGTGGTCGGACCCTTCCC 61.776 60.000 23.81 7.17 38.99 3.97
1667 1719 3.714001 GTGGTCGGACCCTTCCCC 61.714 72.222 23.81 0.00 38.99 4.81
1668 1720 4.257810 TGGTCGGACCCTTCCCCA 62.258 66.667 23.81 0.69 38.99 4.96
1669 1721 3.400054 GGTCGGACCCTTCCCCAG 61.400 72.222 16.55 0.00 38.99 4.45
1670 1722 2.284405 GTCGGACCCTTCCCCAGA 60.284 66.667 0.00 0.00 38.99 3.86
1671 1723 2.284405 TCGGACCCTTCCCCAGAC 60.284 66.667 0.00 0.00 38.99 3.51
1672 1724 3.400054 CGGACCCTTCCCCAGACC 61.400 72.222 0.00 0.00 38.99 3.85
1673 1725 3.015753 GGACCCTTCCCCAGACCC 61.016 72.222 0.00 0.00 35.57 4.46
1674 1726 2.125225 GACCCTTCCCCAGACCCT 59.875 66.667 0.00 0.00 0.00 4.34
1675 1727 2.204151 ACCCTTCCCCAGACCCTG 60.204 66.667 0.00 0.00 0.00 4.45
1676 1728 3.732849 CCCTTCCCCAGACCCTGC 61.733 72.222 0.00 0.00 0.00 4.85
1677 1729 4.101448 CCTTCCCCAGACCCTGCG 62.101 72.222 0.00 0.00 0.00 5.18
1678 1730 4.785453 CTTCCCCAGACCCTGCGC 62.785 72.222 0.00 0.00 0.00 6.09
1699 1751 4.115279 CGGGAGCTACATGCACTG 57.885 61.111 0.00 0.00 45.94 3.66
1700 1752 1.522355 CGGGAGCTACATGCACTGG 60.522 63.158 0.00 0.00 45.94 4.00
1701 1753 1.153086 GGGAGCTACATGCACTGGG 60.153 63.158 0.00 0.00 45.94 4.45
1702 1754 1.153086 GGAGCTACATGCACTGGGG 60.153 63.158 0.00 0.00 45.94 4.96
1703 1755 1.821332 GAGCTACATGCACTGGGGC 60.821 63.158 0.00 0.00 45.94 5.80
1704 1756 2.262774 GAGCTACATGCACTGGGGCT 62.263 60.000 13.29 13.29 45.94 5.19
1705 1757 2.117156 GCTACATGCACTGGGGCTG 61.117 63.158 0.00 0.00 42.31 4.85
1706 1758 2.045045 TACATGCACTGGGGCTGC 60.045 61.111 0.00 0.00 35.03 5.25
1707 1759 3.643595 TACATGCACTGGGGCTGCC 62.644 63.158 11.05 11.05 33.36 4.85
1734 1786 9.332502 CTTTAGTACTGCAGAATAGAGTAGAGA 57.667 37.037 23.35 0.00 0.00 3.10
1747 1799 9.344772 GAATAGAGTAGAGACCTGTGAAATAGA 57.655 37.037 0.00 0.00 0.00 1.98
1758 1810 4.323792 CCTGTGAAATAGAAGAAGGCTGGA 60.324 45.833 0.00 0.00 0.00 3.86
1922 1974 5.681437 GCATTCCGTTCTAGTTGATCCTACA 60.681 44.000 0.00 0.00 0.00 2.74
2076 2131 7.495934 TGGTATTTCTGCTAATTCTAGAACAGC 59.504 37.037 24.40 24.40 34.24 4.40
2369 2439 5.899547 TCTTCCATTCAAGCCTATCACTCTA 59.100 40.000 0.00 0.00 0.00 2.43
2501 2578 1.949525 ACGCCCATGAAATAGACATGC 59.050 47.619 0.00 0.00 42.31 4.06
2502 2579 1.948834 CGCCCATGAAATAGACATGCA 59.051 47.619 0.00 0.00 42.31 3.96
2503 2580 2.031420 CGCCCATGAAATAGACATGCAG 60.031 50.000 0.00 0.00 42.31 4.41
2504 2581 2.954318 GCCCATGAAATAGACATGCAGT 59.046 45.455 0.00 0.00 42.31 4.40
2505 2582 3.243301 GCCCATGAAATAGACATGCAGTG 60.243 47.826 0.00 0.00 42.31 3.66
2805 2883 4.220602 AGAATTGTGGGGCTTATGTTTGTC 59.779 41.667 0.00 0.00 0.00 3.18
2811 2889 3.073209 TGGGGCTTATGTTTGTCTGTACA 59.927 43.478 0.00 0.00 0.00 2.90
2918 2996 5.765182 CACCTCTAACAACAGAAAAGTGGAT 59.235 40.000 0.00 0.00 0.00 3.41
3002 3080 7.715265 ATCACGACCAGATGTTAAATATGAC 57.285 36.000 0.00 0.00 0.00 3.06
3352 3432 3.916761 TGTTACCAACACCTATCGTGAC 58.083 45.455 0.00 0.00 46.20 3.67
3519 3682 7.115378 GGTGTTGAAGATATTCTTTGCAGTTTG 59.885 37.037 1.19 0.00 36.73 2.93
3534 3697 4.862018 TGCAGTTTGAAGCAAAACAACTAC 59.138 37.500 10.93 0.00 41.56 2.73
3575 3738 8.245195 ACAAATTATCCAGTGTGGTAAGTTTT 57.755 30.769 0.00 0.00 39.03 2.43
4271 4444 1.973138 CAACACTGCACTTGCTATGC 58.027 50.000 2.33 1.07 43.68 3.14
4345 4518 5.904362 ATCGAATAAAAAGGCTGCTTCTT 57.096 34.783 0.00 0.00 0.00 2.52
4359 4532 3.347216 TGCTTCTTATCTTGGACTTGGC 58.653 45.455 0.00 0.00 0.00 4.52
4476 4649 5.106038 GCATTTTCATTGATGACAGGTCTGA 60.106 40.000 4.84 0.00 36.36 3.27
4591 4764 1.810412 CGGCCCTTAGTGTAGGAATGC 60.810 57.143 0.00 0.00 37.50 3.56
4654 4827 1.230324 GTGCTCACTGGGAGTTGAAC 58.770 55.000 8.98 0.00 45.88 3.18
4711 4884 5.235850 TCAGTAACATGGCTTCCTGTTTA 57.764 39.130 0.00 0.00 36.92 2.01
4767 4943 9.829507 ATAATCCTTCTGTCTCTTTATGAACTG 57.170 33.333 0.00 0.00 0.00 3.16
4772 4948 4.528206 TCTGTCTCTTTATGAACTGCTCCA 59.472 41.667 0.00 0.00 0.00 3.86
4773 4949 4.569943 TGTCTCTTTATGAACTGCTCCAC 58.430 43.478 0.00 0.00 0.00 4.02
4798 4974 2.193306 AAAAGCTTGACGTGCTGTTG 57.807 45.000 0.00 0.00 41.03 3.33
4801 4977 0.657840 AGCTTGACGTGCTGTTGTTC 59.342 50.000 0.00 0.00 39.56 3.18
4807 4983 1.258982 GACGTGCTGTTGTTCTCACAG 59.741 52.381 0.00 0.00 33.22 3.66
4822 4998 2.499289 CTCACAGCATTGTACTCCCTCT 59.501 50.000 0.00 0.00 35.25 3.69
4854 5030 8.932791 CAAATGTAAGACGTTTTAGGTCACTAT 58.067 33.333 0.00 0.00 35.31 2.12
4988 5171 6.039382 GGGAATTGTGAAAGCTAAATCGGTAT 59.961 38.462 0.00 0.00 0.00 2.73
5003 5186 1.061131 CGGTATGTTTTGCTGAGCTCG 59.939 52.381 9.64 5.21 0.00 5.03
5026 5209 9.440773 CTCGATCCAGGATGAAAATAAATCATA 57.559 33.333 6.70 0.00 39.69 2.15
5060 5304 6.651225 AGTTTAAGTGTGGTTAGAGCATTCTC 59.349 38.462 0.00 0.00 39.65 2.87
5094 5338 7.268586 TCAGTACTTCCATCTATCAAAGCTTC 58.731 38.462 0.00 0.00 0.00 3.86
5108 5352 0.321919 AGCTTCGATGAGCCTTTGCA 60.322 50.000 5.48 0.00 43.74 4.08
5487 5731 2.666989 GCTATTCGGCGCCTATAGC 58.333 57.895 34.73 34.73 39.75 2.97
5488 5732 0.108804 GCTATTCGGCGCCTATAGCA 60.109 55.000 38.49 16.75 43.83 3.49
5489 5733 1.914634 CTATTCGGCGCCTATAGCAG 58.085 55.000 26.68 6.92 44.04 4.24
5490 5734 0.108804 TATTCGGCGCCTATAGCAGC 60.109 55.000 26.68 8.59 44.04 5.25
5493 5737 4.301027 GGCGCCTATAGCAGCCGT 62.301 66.667 22.15 0.00 46.15 5.68
5494 5738 2.280186 GCGCCTATAGCAGCCGTT 60.280 61.111 0.00 0.00 44.04 4.44
5495 5739 1.006571 GCGCCTATAGCAGCCGTTA 60.007 57.895 0.00 0.00 44.04 3.18
5496 5740 0.599204 GCGCCTATAGCAGCCGTTAA 60.599 55.000 0.00 0.00 44.04 2.01
5497 5741 1.860676 CGCCTATAGCAGCCGTTAAA 58.139 50.000 0.00 0.00 44.04 1.52
5498 5742 1.792949 CGCCTATAGCAGCCGTTAAAG 59.207 52.381 0.00 0.00 44.04 1.85
5499 5743 2.143925 GCCTATAGCAGCCGTTAAAGG 58.856 52.381 2.65 2.65 42.97 3.11
5500 5744 2.767505 CCTATAGCAGCCGTTAAAGGG 58.232 52.381 9.60 0.00 0.00 3.95
5510 5754 3.547649 CCGTTAAAGGGCAAACTGTAC 57.452 47.619 0.00 0.00 0.00 2.90
5511 5755 2.227149 CCGTTAAAGGGCAAACTGTACC 59.773 50.000 0.00 0.00 0.00 3.34
5512 5756 2.879646 CGTTAAAGGGCAAACTGTACCA 59.120 45.455 0.00 0.00 0.00 3.25
5513 5757 3.058501 CGTTAAAGGGCAAACTGTACCAG 60.059 47.826 0.00 0.00 37.52 4.00
5514 5758 1.995376 AAAGGGCAAACTGTACCAGG 58.005 50.000 0.00 0.00 35.51 4.45
5515 5759 0.539669 AAGGGCAAACTGTACCAGGC 60.540 55.000 0.00 0.00 35.51 4.85
5516 5760 1.228429 GGGCAAACTGTACCAGGCA 60.228 57.895 0.00 0.00 35.51 4.75
5517 5761 1.524008 GGGCAAACTGTACCAGGCAC 61.524 60.000 0.00 0.00 35.51 5.01
5518 5762 0.821711 GGCAAACTGTACCAGGCACA 60.822 55.000 0.00 0.00 35.51 4.57
5519 5763 0.310854 GCAAACTGTACCAGGCACAC 59.689 55.000 0.00 0.00 35.51 3.82
5520 5764 1.674359 CAAACTGTACCAGGCACACA 58.326 50.000 0.00 0.00 35.51 3.72
5521 5765 2.020720 CAAACTGTACCAGGCACACAA 58.979 47.619 0.00 0.00 35.51 3.33
5522 5766 1.675552 AACTGTACCAGGCACACAAC 58.324 50.000 0.00 0.00 35.51 3.32
5523 5767 0.531974 ACTGTACCAGGCACACAACG 60.532 55.000 0.00 0.00 35.51 4.10
5524 5768 1.841663 CTGTACCAGGCACACAACGC 61.842 60.000 0.00 0.00 0.00 4.84
5525 5769 1.890041 GTACCAGGCACACAACGCA 60.890 57.895 0.00 0.00 0.00 5.24
5526 5770 1.072332 TACCAGGCACACAACGCAT 59.928 52.632 0.00 0.00 0.00 4.73
5527 5771 1.233950 TACCAGGCACACAACGCATG 61.234 55.000 0.00 0.00 40.70 4.06
5528 5772 2.260154 CCAGGCACACAACGCATGA 61.260 57.895 0.00 0.00 43.58 3.07
5529 5773 1.588824 CCAGGCACACAACGCATGAT 61.589 55.000 0.00 0.00 43.58 2.45
5530 5774 1.085893 CAGGCACACAACGCATGATA 58.914 50.000 0.00 0.00 43.58 2.15
5531 5775 1.468127 CAGGCACACAACGCATGATAA 59.532 47.619 0.00 0.00 43.58 1.75
5532 5776 2.095314 CAGGCACACAACGCATGATAAA 60.095 45.455 0.00 0.00 43.58 1.40
5533 5777 2.162208 AGGCACACAACGCATGATAAAG 59.838 45.455 0.00 0.00 0.00 1.85
5534 5778 2.095263 GGCACACAACGCATGATAAAGT 60.095 45.455 0.00 0.00 0.00 2.66
5535 5779 2.910482 GCACACAACGCATGATAAAGTG 59.090 45.455 0.00 0.39 0.00 3.16
5536 5780 3.491356 CACACAACGCATGATAAAGTGG 58.509 45.455 0.00 0.00 0.00 4.00
5537 5781 2.487762 ACACAACGCATGATAAAGTGGG 59.512 45.455 0.00 0.00 0.00 4.61
5538 5782 1.472480 ACAACGCATGATAAAGTGGGC 59.528 47.619 0.00 0.00 0.00 5.36
5539 5783 1.102978 AACGCATGATAAAGTGGGCC 58.897 50.000 0.00 0.00 0.00 5.80
5540 5784 1.095228 ACGCATGATAAAGTGGGCCG 61.095 55.000 0.00 0.00 0.00 6.13
5541 5785 1.785041 CGCATGATAAAGTGGGCCGG 61.785 60.000 0.00 0.00 0.00 6.13
5542 5786 2.032981 CATGATAAAGTGGGCCGGC 58.967 57.895 21.18 21.18 0.00 6.13
5543 5787 1.152756 ATGATAAAGTGGGCCGGCC 60.153 57.895 38.57 38.57 0.00 6.13
5544 5788 1.932156 ATGATAAAGTGGGCCGGCCA 61.932 55.000 44.46 28.54 37.98 5.36
5545 5789 1.152756 GATAAAGTGGGCCGGCCAT 60.153 57.895 44.46 29.25 37.98 4.40
5546 5790 1.455383 GATAAAGTGGGCCGGCCATG 61.455 60.000 44.46 0.00 37.98 3.66
5547 5791 1.932156 ATAAAGTGGGCCGGCCATGA 61.932 55.000 44.46 26.30 37.98 3.07
5548 5792 2.143575 TAAAGTGGGCCGGCCATGAA 62.144 55.000 44.46 25.11 37.98 2.57
5549 5793 4.740822 AGTGGGCCGGCCATGAAC 62.741 66.667 44.46 33.19 37.98 3.18
5555 5799 2.433491 CCGGCCATGAACGTCGAA 60.433 61.111 2.24 0.00 0.00 3.71
5556 5800 2.736682 CCGGCCATGAACGTCGAAC 61.737 63.158 2.24 0.00 0.00 3.95
5557 5801 2.736682 CGGCCATGAACGTCGAACC 61.737 63.158 2.24 0.00 0.00 3.62
5558 5802 1.669760 GGCCATGAACGTCGAACCA 60.670 57.895 0.00 0.00 0.00 3.67
5559 5803 1.024579 GGCCATGAACGTCGAACCAT 61.025 55.000 0.00 0.00 0.00 3.55
5560 5804 0.802494 GCCATGAACGTCGAACCATT 59.198 50.000 0.00 0.00 0.00 3.16
5561 5805 1.199097 GCCATGAACGTCGAACCATTT 59.801 47.619 0.00 0.00 0.00 2.32
5562 5806 2.727916 GCCATGAACGTCGAACCATTTC 60.728 50.000 0.00 0.00 0.00 2.17
5563 5807 2.742053 CCATGAACGTCGAACCATTTCT 59.258 45.455 0.00 0.00 0.00 2.52
5564 5808 3.424829 CCATGAACGTCGAACCATTTCTG 60.425 47.826 0.00 0.00 0.00 3.02
5577 5821 3.900941 CCATTTCTGGTTTGTGTGTAGC 58.099 45.455 0.00 0.00 37.79 3.58
5578 5822 3.569701 CCATTTCTGGTTTGTGTGTAGCT 59.430 43.478 0.00 0.00 37.79 3.32
5579 5823 4.037923 CCATTTCTGGTTTGTGTGTAGCTT 59.962 41.667 0.00 0.00 37.79 3.74
5580 5824 4.893424 TTTCTGGTTTGTGTGTAGCTTC 57.107 40.909 0.00 0.00 0.00 3.86
5581 5825 3.838244 TCTGGTTTGTGTGTAGCTTCT 57.162 42.857 0.00 0.00 0.00 2.85
5582 5826 4.948341 TCTGGTTTGTGTGTAGCTTCTA 57.052 40.909 0.00 0.00 0.00 2.10
5583 5827 4.883083 TCTGGTTTGTGTGTAGCTTCTAG 58.117 43.478 0.00 0.00 0.00 2.43
5584 5828 3.399330 TGGTTTGTGTGTAGCTTCTAGC 58.601 45.455 0.00 0.00 42.84 3.42
5585 5829 2.742589 GGTTTGTGTGTAGCTTCTAGCC 59.257 50.000 0.00 0.00 43.77 3.93
5586 5830 2.363788 TTGTGTGTAGCTTCTAGCCG 57.636 50.000 0.00 0.00 43.77 5.52
5587 5831 0.530744 TGTGTGTAGCTTCTAGCCGG 59.469 55.000 0.00 0.00 43.77 6.13
5588 5832 0.531200 GTGTGTAGCTTCTAGCCGGT 59.469 55.000 1.90 0.00 43.77 5.28
5589 5833 1.067071 GTGTGTAGCTTCTAGCCGGTT 60.067 52.381 1.90 0.00 43.77 4.44
5590 5834 1.621814 TGTGTAGCTTCTAGCCGGTTT 59.378 47.619 1.90 0.00 43.77 3.27
5591 5835 2.038033 TGTGTAGCTTCTAGCCGGTTTT 59.962 45.455 1.90 0.00 43.77 2.43
5592 5836 2.415512 GTGTAGCTTCTAGCCGGTTTTG 59.584 50.000 1.90 0.00 43.77 2.44
5593 5837 2.007608 GTAGCTTCTAGCCGGTTTTGG 58.992 52.381 1.90 0.00 43.77 3.28
5602 5846 3.770625 CCGGTTTTGGCCAGTTTTT 57.229 47.368 5.11 0.00 0.00 1.94
5640 5884 9.809096 ATTTTTCTGTTTCCTTCTTCTCTTTTC 57.191 29.630 0.00 0.00 0.00 2.29
5641 5885 7.938140 TTTCTGTTTCCTTCTTCTCTTTTCA 57.062 32.000 0.00 0.00 0.00 2.69
5642 5886 8.525290 TTTCTGTTTCCTTCTTCTCTTTTCAT 57.475 30.769 0.00 0.00 0.00 2.57
5643 5887 8.525290 TTCTGTTTCCTTCTTCTCTTTTCATT 57.475 30.769 0.00 0.00 0.00 2.57
5644 5888 8.525290 TCTGTTTCCTTCTTCTCTTTTCATTT 57.475 30.769 0.00 0.00 0.00 2.32
5645 5889 8.971073 TCTGTTTCCTTCTTCTCTTTTCATTTT 58.029 29.630 0.00 0.00 0.00 1.82
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
12 13 1.978617 GGTGGATGTGCCTGTTGGG 60.979 63.158 0.00 0.00 37.63 4.12
13 14 0.612732 ATGGTGGATGTGCCTGTTGG 60.613 55.000 0.00 0.00 37.63 3.77
14 15 2.019249 CTATGGTGGATGTGCCTGTTG 58.981 52.381 0.00 0.00 37.63 3.33
15 16 1.683011 GCTATGGTGGATGTGCCTGTT 60.683 52.381 0.00 0.00 37.63 3.16
16 17 0.107017 GCTATGGTGGATGTGCCTGT 60.107 55.000 0.00 0.00 37.63 4.00
17 18 0.820891 GGCTATGGTGGATGTGCCTG 60.821 60.000 0.00 0.00 37.58 4.85
18 19 1.533711 GGCTATGGTGGATGTGCCT 59.466 57.895 0.00 0.00 37.58 4.75
19 20 1.529244 GGGCTATGGTGGATGTGCC 60.529 63.158 0.00 0.00 39.61 5.01
20 21 0.106519 AAGGGCTATGGTGGATGTGC 60.107 55.000 0.00 0.00 0.00 4.57
21 22 1.683943 CAAGGGCTATGGTGGATGTG 58.316 55.000 0.00 0.00 0.00 3.21
22 23 0.552848 CCAAGGGCTATGGTGGATGT 59.447 55.000 1.57 0.00 32.54 3.06
23 24 3.426903 CCAAGGGCTATGGTGGATG 57.573 57.895 1.57 0.00 32.54 3.51
29 30 2.203209 GGCGACCAAGGGCTATGG 60.203 66.667 7.43 7.43 43.84 2.74
30 31 2.588877 CGGCGACCAAGGGCTATG 60.589 66.667 0.00 0.00 0.00 2.23
31 32 4.547367 GCGGCGACCAAGGGCTAT 62.547 66.667 12.98 0.00 0.00 2.97
37 38 3.620300 TACTCGTGCGGCGACCAAG 62.620 63.158 12.98 2.06 45.68 3.61
38 39 3.620300 CTACTCGTGCGGCGACCAA 62.620 63.158 12.98 0.00 45.68 3.67
39 40 4.111016 CTACTCGTGCGGCGACCA 62.111 66.667 12.98 0.00 45.68 4.02
44 45 2.511600 ATTGGCTACTCGTGCGGC 60.512 61.111 0.00 0.00 0.00 6.53
45 46 1.153647 TCATTGGCTACTCGTGCGG 60.154 57.895 0.00 0.00 0.00 5.69
46 47 1.742900 CGTCATTGGCTACTCGTGCG 61.743 60.000 0.00 0.00 0.00 5.34
47 48 0.457853 TCGTCATTGGCTACTCGTGC 60.458 55.000 0.00 0.00 0.00 5.34
48 49 1.990799 TTCGTCATTGGCTACTCGTG 58.009 50.000 0.00 0.00 0.00 4.35
49 50 2.481449 GGATTCGTCATTGGCTACTCGT 60.481 50.000 0.00 0.00 0.00 4.18
50 51 2.128035 GGATTCGTCATTGGCTACTCG 58.872 52.381 0.00 0.00 0.00 4.18
51 52 3.385577 GAGGATTCGTCATTGGCTACTC 58.614 50.000 1.56 0.00 0.00 2.59
52 53 2.103263 GGAGGATTCGTCATTGGCTACT 59.897 50.000 8.50 0.00 0.00 2.57
53 54 2.158957 TGGAGGATTCGTCATTGGCTAC 60.159 50.000 8.50 0.00 0.00 3.58
54 55 2.115427 TGGAGGATTCGTCATTGGCTA 58.885 47.619 8.50 0.00 0.00 3.93
55 56 0.911769 TGGAGGATTCGTCATTGGCT 59.088 50.000 8.50 0.00 0.00 4.75
56 57 1.017387 GTGGAGGATTCGTCATTGGC 58.983 55.000 8.50 0.00 0.00 4.52
57 58 1.290203 CGTGGAGGATTCGTCATTGG 58.710 55.000 8.50 0.00 0.00 3.16
58 59 0.652592 GCGTGGAGGATTCGTCATTG 59.347 55.000 8.50 0.00 0.00 2.82
59 60 0.806102 CGCGTGGAGGATTCGTCATT 60.806 55.000 0.00 0.00 0.00 2.57
60 61 1.226974 CGCGTGGAGGATTCGTCAT 60.227 57.895 0.00 0.00 0.00 3.06
61 62 2.180769 CGCGTGGAGGATTCGTCA 59.819 61.111 0.00 0.00 0.00 4.35
62 63 2.332362 TAGCGCGTGGAGGATTCGTC 62.332 60.000 8.43 0.00 0.00 4.20
63 64 2.412323 TAGCGCGTGGAGGATTCGT 61.412 57.895 8.43 0.00 0.00 3.85
64 65 1.944676 GTAGCGCGTGGAGGATTCG 60.945 63.158 8.43 0.00 0.00 3.34
65 66 0.459585 TTGTAGCGCGTGGAGGATTC 60.460 55.000 8.43 0.00 0.00 2.52
66 67 0.739813 GTTGTAGCGCGTGGAGGATT 60.740 55.000 8.43 0.00 0.00 3.01
67 68 1.153628 GTTGTAGCGCGTGGAGGAT 60.154 57.895 8.43 0.00 0.00 3.24
68 69 2.260434 GTTGTAGCGCGTGGAGGA 59.740 61.111 8.43 0.00 0.00 3.71
69 70 2.781595 AAGGTTGTAGCGCGTGGAGG 62.782 60.000 8.43 0.00 0.00 4.30
70 71 1.374252 AAGGTTGTAGCGCGTGGAG 60.374 57.895 8.43 0.00 0.00 3.86
100 101 2.123428 GGCGCTGCATTCCCTCATT 61.123 57.895 7.64 0.00 0.00 2.57
159 160 3.041940 GTGCGACGAGGTGGTTGG 61.042 66.667 0.00 0.00 0.00 3.77
178 179 2.441532 TCTTCTACTCGGGGCGGG 60.442 66.667 0.00 0.00 0.00 6.13
189 190 1.183549 GTTGGAGTCGCCCTCTTCTA 58.816 55.000 2.59 0.00 40.30 2.10
191 192 1.446272 CGTTGGAGTCGCCCTCTTC 60.446 63.158 2.59 0.00 40.30 2.87
238 239 1.901464 GGCGGTGTTGGTCCATTGT 60.901 57.895 0.00 0.00 0.00 2.71
241 242 4.715523 CCGGCGGTGTTGGTCCAT 62.716 66.667 19.97 0.00 0.00 3.41
625 626 4.441913 GCATATTGTTTGGTAGGCTGCATT 60.442 41.667 4.64 0.00 0.00 3.56
645 646 5.047872 TGCAGACTGAAAATATGTTGTGCAT 60.048 36.000 6.65 0.00 41.42 3.96
663 664 5.261209 AGACAGATTGAGTAGATGCAGAC 57.739 43.478 0.00 0.00 0.00 3.51
665 666 4.809958 CCAAGACAGATTGAGTAGATGCAG 59.190 45.833 0.00 0.00 31.55 4.41
678 679 4.492494 TGCATATGTGTCCAAGACAGAT 57.508 40.909 11.51 11.51 45.97 2.90
679 680 3.979101 TGCATATGTGTCCAAGACAGA 57.021 42.857 4.29 0.00 43.57 3.41
681 682 4.256110 CTCTTGCATATGTGTCCAAGACA 58.744 43.478 15.43 0.00 40.50 3.41
710 719 4.604043 CGTCGTTTGATATCTTGCATCGTC 60.604 45.833 3.98 0.00 0.00 4.20
730 739 1.019805 GCTACCTTGGCTTGGTCGTC 61.020 60.000 5.34 0.00 38.88 4.20
731 740 1.003718 GCTACCTTGGCTTGGTCGT 60.004 57.895 5.34 0.00 38.88 4.34
732 741 0.392998 ATGCTACCTTGGCTTGGTCG 60.393 55.000 5.34 1.70 38.88 4.79
733 742 1.839424 AATGCTACCTTGGCTTGGTC 58.161 50.000 5.34 0.00 38.88 4.02
734 743 3.089284 GTTAATGCTACCTTGGCTTGGT 58.911 45.455 7.13 7.13 41.28 3.67
736 745 7.986085 ATATAGTTAATGCTACCTTGGCTTG 57.014 36.000 0.00 0.00 0.00 4.01
781 829 9.942850 TGAACAGAGAGAATACATGTTGAATTA 57.057 29.630 2.30 0.00 34.41 1.40
782 830 8.725148 GTGAACAGAGAGAATACATGTTGAATT 58.275 33.333 2.30 0.00 34.41 2.17
783 831 8.099537 AGTGAACAGAGAGAATACATGTTGAAT 58.900 33.333 2.30 0.00 34.41 2.57
784 832 7.445121 AGTGAACAGAGAGAATACATGTTGAA 58.555 34.615 2.30 0.00 34.41 2.69
785 833 6.997655 AGTGAACAGAGAGAATACATGTTGA 58.002 36.000 2.30 0.00 34.41 3.18
786 834 7.664082 AAGTGAACAGAGAGAATACATGTTG 57.336 36.000 2.30 0.00 34.41 3.33
787 835 8.562892 CAAAAGTGAACAGAGAGAATACATGTT 58.437 33.333 2.30 0.00 36.83 2.71
788 836 7.716998 ACAAAAGTGAACAGAGAGAATACATGT 59.283 33.333 2.69 2.69 0.00 3.21
789 837 8.092521 ACAAAAGTGAACAGAGAGAATACATG 57.907 34.615 0.00 0.00 0.00 3.21
790 838 9.429359 CTACAAAAGTGAACAGAGAGAATACAT 57.571 33.333 0.00 0.00 0.00 2.29
791 839 7.872993 CCTACAAAAGTGAACAGAGAGAATACA 59.127 37.037 0.00 0.00 0.00 2.29
792 840 8.088981 TCCTACAAAAGTGAACAGAGAGAATAC 58.911 37.037 0.00 0.00 0.00 1.89
793 841 8.088981 GTCCTACAAAAGTGAACAGAGAGAATA 58.911 37.037 0.00 0.00 0.00 1.75
794 842 6.931840 GTCCTACAAAAGTGAACAGAGAGAAT 59.068 38.462 0.00 0.00 0.00 2.40
795 843 6.281405 GTCCTACAAAAGTGAACAGAGAGAA 58.719 40.000 0.00 0.00 0.00 2.87
796 844 5.507482 CGTCCTACAAAAGTGAACAGAGAGA 60.507 44.000 0.00 0.00 0.00 3.10
797 845 4.681942 CGTCCTACAAAAGTGAACAGAGAG 59.318 45.833 0.00 0.00 0.00 3.20
798 846 4.098960 ACGTCCTACAAAAGTGAACAGAGA 59.901 41.667 0.00 0.00 0.00 3.10
799 847 4.369182 ACGTCCTACAAAAGTGAACAGAG 58.631 43.478 0.00 0.00 0.00 3.35
800 848 4.395959 ACGTCCTACAAAAGTGAACAGA 57.604 40.909 0.00 0.00 0.00 3.41
801 849 5.479716 AAACGTCCTACAAAAGTGAACAG 57.520 39.130 0.00 0.00 0.00 3.16
802 850 5.883503 AAAACGTCCTACAAAAGTGAACA 57.116 34.783 0.00 0.00 0.00 3.18
803 851 7.121911 GTCTAAAACGTCCTACAAAAGTGAAC 58.878 38.462 0.00 0.00 0.00 3.18
804 852 6.817641 TGTCTAAAACGTCCTACAAAAGTGAA 59.182 34.615 0.00 0.00 0.00 3.18
805 853 6.339730 TGTCTAAAACGTCCTACAAAAGTGA 58.660 36.000 0.00 0.00 0.00 3.41
806 854 6.592798 TGTCTAAAACGTCCTACAAAAGTG 57.407 37.500 0.00 0.00 0.00 3.16
807 855 7.797038 AATGTCTAAAACGTCCTACAAAAGT 57.203 32.000 0.00 0.00 0.00 2.66
815 863 9.367444 CTGTCTTATAAATGTCTAAAACGTCCT 57.633 33.333 0.00 0.00 0.00 3.85
816 864 8.114905 GCTGTCTTATAAATGTCTAAAACGTCC 58.885 37.037 0.00 0.00 0.00 4.79
817 865 8.653338 TGCTGTCTTATAAATGTCTAAAACGTC 58.347 33.333 0.00 0.00 0.00 4.34
818 866 8.440833 GTGCTGTCTTATAAATGTCTAAAACGT 58.559 33.333 0.00 0.00 0.00 3.99
819 867 7.903431 GGTGCTGTCTTATAAATGTCTAAAACG 59.097 37.037 0.00 0.00 0.00 3.60
820 868 8.947115 AGGTGCTGTCTTATAAATGTCTAAAAC 58.053 33.333 0.00 0.00 0.00 2.43
825 873 8.947115 GTTTTAGGTGCTGTCTTATAAATGTCT 58.053 33.333 0.00 0.00 0.00 3.41
826 874 8.726988 TGTTTTAGGTGCTGTCTTATAAATGTC 58.273 33.333 0.00 0.00 0.00 3.06
827 875 8.630054 TGTTTTAGGTGCTGTCTTATAAATGT 57.370 30.769 0.00 0.00 0.00 2.71
828 876 8.730680 ACTGTTTTAGGTGCTGTCTTATAAATG 58.269 33.333 0.00 0.00 0.00 2.32
829 877 8.863872 ACTGTTTTAGGTGCTGTCTTATAAAT 57.136 30.769 0.00 0.00 0.00 1.40
830 878 8.685838 AACTGTTTTAGGTGCTGTCTTATAAA 57.314 30.769 0.00 0.00 0.00 1.40
831 879 8.685838 AAACTGTTTTAGGTGCTGTCTTATAA 57.314 30.769 0.00 0.00 0.00 0.98
832 880 9.781633 TTAAACTGTTTTAGGTGCTGTCTTATA 57.218 29.630 11.48 0.00 0.00 0.98
833 881 8.685838 TTAAACTGTTTTAGGTGCTGTCTTAT 57.314 30.769 11.48 0.00 0.00 1.73
834 882 8.685838 ATTAAACTGTTTTAGGTGCTGTCTTA 57.314 30.769 11.48 0.00 0.00 2.10
835 883 7.582667 ATTAAACTGTTTTAGGTGCTGTCTT 57.417 32.000 11.48 0.00 0.00 3.01
836 884 7.582667 AATTAAACTGTTTTAGGTGCTGTCT 57.417 32.000 11.48 0.00 0.00 3.41
837 885 7.918562 TGAAATTAAACTGTTTTAGGTGCTGTC 59.081 33.333 11.48 0.00 0.00 3.51
838 886 7.777095 TGAAATTAAACTGTTTTAGGTGCTGT 58.223 30.769 11.48 0.00 0.00 4.40
839 887 7.096065 GCTGAAATTAAACTGTTTTAGGTGCTG 60.096 37.037 11.48 0.00 0.00 4.41
840 888 6.923508 GCTGAAATTAAACTGTTTTAGGTGCT 59.076 34.615 11.48 0.00 0.00 4.40
841 889 6.923508 AGCTGAAATTAAACTGTTTTAGGTGC 59.076 34.615 11.48 7.86 32.66 5.01
842 890 7.920682 ACAGCTGAAATTAAACTGTTTTAGGTG 59.079 33.333 23.35 15.81 46.19 4.00
843 891 8.007405 ACAGCTGAAATTAAACTGTTTTAGGT 57.993 30.769 23.35 4.25 38.38 3.08
844 892 8.871686 AACAGCTGAAATTAAACTGTTTTAGG 57.128 30.769 23.35 0.00 46.47 2.69
850 898 8.803799 CGTTTAAAACAGCTGAAATTAAACTGT 58.196 29.630 32.71 10.97 43.14 3.55
851 899 9.015577 TCGTTTAAAACAGCTGAAATTAAACTG 57.984 29.630 32.71 28.78 41.14 3.16
852 900 9.016623 GTCGTTTAAAACAGCTGAAATTAAACT 57.983 29.630 32.71 15.19 41.14 2.66
853 901 9.016623 AGTCGTTTAAAACAGCTGAAATTAAAC 57.983 29.630 30.25 30.25 40.46 2.01
854 902 9.575783 AAGTCGTTTAAAACAGCTGAAATTAAA 57.424 25.926 23.35 21.82 0.00 1.52
856 904 9.654417 GTAAGTCGTTTAAAACAGCTGAAATTA 57.346 29.630 23.35 12.95 0.00 1.40
857 905 8.185505 TGTAAGTCGTTTAAAACAGCTGAAATT 58.814 29.630 23.35 13.97 0.00 1.82
858 906 7.699566 TGTAAGTCGTTTAAAACAGCTGAAAT 58.300 30.769 23.35 7.92 0.00 2.17
859 907 7.074507 TGTAAGTCGTTTAAAACAGCTGAAA 57.925 32.000 23.35 7.52 0.00 2.69
860 908 6.665474 TGTAAGTCGTTTAAAACAGCTGAA 57.335 33.333 23.35 0.04 0.00 3.02
861 909 6.665474 TTGTAAGTCGTTTAAAACAGCTGA 57.335 33.333 23.35 0.00 0.00 4.26
862 910 7.728580 TTTTGTAAGTCGTTTAAAACAGCTG 57.271 32.000 13.48 13.48 0.00 4.24
863 911 8.803799 CATTTTTGTAAGTCGTTTAAAACAGCT 58.196 29.630 0.00 0.00 0.00 4.24
864 912 8.800031 TCATTTTTGTAAGTCGTTTAAAACAGC 58.200 29.630 0.00 0.00 0.00 4.40
873 921 9.706691 TCTCTCTATTCATTTTTGTAAGTCGTT 57.293 29.630 0.00 0.00 0.00 3.85
874 922 9.360093 CTCTCTCTATTCATTTTTGTAAGTCGT 57.640 33.333 0.00 0.00 0.00 4.34
875 923 9.360093 ACTCTCTCTATTCATTTTTGTAAGTCG 57.640 33.333 0.00 0.00 0.00 4.18
986 1036 0.890683 GACCATCAAGGCAACCCAAG 59.109 55.000 0.00 0.00 43.14 3.61
987 1037 0.482446 AGACCATCAAGGCAACCCAA 59.518 50.000 0.00 0.00 43.14 4.12
988 1038 0.038166 GAGACCATCAAGGCAACCCA 59.962 55.000 0.00 0.00 43.14 4.51
989 1039 0.681243 GGAGACCATCAAGGCAACCC 60.681 60.000 0.00 0.00 43.14 4.11
990 1040 0.329596 AGGAGACCATCAAGGCAACC 59.670 55.000 0.00 0.00 43.14 3.77
991 1041 1.815003 CAAGGAGACCATCAAGGCAAC 59.185 52.381 0.00 0.00 43.14 4.17
1062 1114 2.046864 TCGAAGCGAGGAGGTGGAG 61.047 63.158 0.00 0.00 0.00 3.86
1077 1129 1.830587 AAGACATGGCTGGCAGTCGA 61.831 55.000 15.29 4.10 36.18 4.20
1086 1138 2.586792 GCGGAGGAAGACATGGCT 59.413 61.111 0.00 0.00 0.00 4.75
1239 1291 0.260816 AGGAGTAGGGGCATGTACGA 59.739 55.000 0.00 0.00 0.00 3.43
1280 1332 4.220602 CACACGGACATATGGATGGATAGA 59.779 45.833 7.80 0.00 37.39 1.98
1289 1341 2.035961 CCTAGACCACACGGACATATGG 59.964 54.545 7.80 0.00 38.26 2.74
1293 1345 0.902984 TGCCTAGACCACACGGACAT 60.903 55.000 0.00 0.00 35.59 3.06
1297 1349 1.815421 GCATGCCTAGACCACACGG 60.815 63.158 6.36 0.00 38.77 4.94
1420 1472 4.877378 AATTCCCGCATAATGCATGATT 57.123 36.364 0.00 0.00 45.36 2.57
1549 1601 9.765795 ATGGTCTATTCTGCAGTACTAAATAAC 57.234 33.333 14.67 10.01 0.00 1.89
1550 1602 9.764363 CATGGTCTATTCTGCAGTACTAAATAA 57.236 33.333 14.67 0.00 0.00 1.40
1551 1603 9.143155 TCATGGTCTATTCTGCAGTACTAAATA 57.857 33.333 14.67 8.91 0.00 1.40
1552 1604 8.023021 TCATGGTCTATTCTGCAGTACTAAAT 57.977 34.615 14.67 8.17 0.00 1.40
1554 1606 6.040955 CCTCATGGTCTATTCTGCAGTACTAA 59.959 42.308 14.67 0.06 0.00 2.24
1555 1607 5.536538 CCTCATGGTCTATTCTGCAGTACTA 59.463 44.000 14.67 4.27 0.00 1.82
1556 1608 4.343526 CCTCATGGTCTATTCTGCAGTACT 59.656 45.833 14.67 2.14 0.00 2.73
1557 1609 4.100189 ACCTCATGGTCTATTCTGCAGTAC 59.900 45.833 14.67 5.59 44.78 2.73
1558 1610 4.290093 ACCTCATGGTCTATTCTGCAGTA 58.710 43.478 14.67 4.08 44.78 2.74
1559 1611 3.110705 ACCTCATGGTCTATTCTGCAGT 58.889 45.455 14.67 0.00 44.78 4.40
1560 1612 3.834489 ACCTCATGGTCTATTCTGCAG 57.166 47.619 7.63 7.63 44.78 4.41
1573 1625 1.270839 ACTTGAACCCGTGACCTCATG 60.271 52.381 0.00 0.00 0.00 3.07
1574 1626 1.002087 GACTTGAACCCGTGACCTCAT 59.998 52.381 0.00 0.00 0.00 2.90
1575 1627 0.391597 GACTTGAACCCGTGACCTCA 59.608 55.000 0.00 0.00 0.00 3.86
1576 1628 0.320508 GGACTTGAACCCGTGACCTC 60.321 60.000 0.00 0.00 0.00 3.85
1577 1629 0.763223 AGGACTTGAACCCGTGACCT 60.763 55.000 0.00 0.00 0.00 3.85
1578 1630 0.602905 CAGGACTTGAACCCGTGACC 60.603 60.000 0.00 0.00 0.00 4.02
1579 1631 0.602905 CCAGGACTTGAACCCGTGAC 60.603 60.000 0.00 0.00 0.00 3.67
1580 1632 0.761323 TCCAGGACTTGAACCCGTGA 60.761 55.000 0.00 0.00 0.00 4.35
1581 1633 0.107831 TTCCAGGACTTGAACCCGTG 59.892 55.000 0.00 0.00 0.00 4.94
1582 1634 0.841289 TTTCCAGGACTTGAACCCGT 59.159 50.000 0.00 0.00 0.00 5.28
1583 1635 1.235724 GTTTCCAGGACTTGAACCCG 58.764 55.000 0.00 0.00 0.00 5.28
1584 1636 2.230660 CTGTTTCCAGGACTTGAACCC 58.769 52.381 0.00 0.00 34.90 4.11
1585 1637 1.609072 GCTGTTTCCAGGACTTGAACC 59.391 52.381 0.00 0.00 39.22 3.62
1586 1638 1.609072 GGCTGTTTCCAGGACTTGAAC 59.391 52.381 0.00 0.00 39.22 3.18
1587 1639 1.494721 AGGCTGTTTCCAGGACTTGAA 59.505 47.619 0.00 0.00 39.22 2.69
1588 1640 1.072331 GAGGCTGTTTCCAGGACTTGA 59.928 52.381 0.00 0.00 39.22 3.02
1589 1641 1.072965 AGAGGCTGTTTCCAGGACTTG 59.927 52.381 0.00 0.00 39.22 3.16
1590 1642 1.439543 AGAGGCTGTTTCCAGGACTT 58.560 50.000 0.00 0.00 39.22 3.01
1591 1643 1.439543 AAGAGGCTGTTTCCAGGACT 58.560 50.000 0.00 0.00 39.22 3.85
1592 1644 2.038557 TGTAAGAGGCTGTTTCCAGGAC 59.961 50.000 0.90 0.00 39.22 3.85
1593 1645 2.303022 CTGTAAGAGGCTGTTTCCAGGA 59.697 50.000 0.90 0.00 35.89 3.86
1594 1646 2.303022 TCTGTAAGAGGCTGTTTCCAGG 59.697 50.000 17.71 5.83 38.67 4.45
1595 1647 3.685139 TCTGTAAGAGGCTGTTTCCAG 57.315 47.619 0.90 9.48 38.67 3.86
1607 1659 5.250774 AGCCTTTCCCTACATTTCTGTAAGA 59.749 40.000 0.00 0.00 44.68 2.10
1608 1660 5.355350 CAGCCTTTCCCTACATTTCTGTAAG 59.645 44.000 0.00 0.00 37.41 2.34
1609 1661 5.253330 CAGCCTTTCCCTACATTTCTGTAA 58.747 41.667 0.00 0.00 37.41 2.41
1610 1662 4.843728 CAGCCTTTCCCTACATTTCTGTA 58.156 43.478 0.00 0.00 36.79 2.74
1611 1663 3.690460 CAGCCTTTCCCTACATTTCTGT 58.310 45.455 0.00 0.00 39.49 3.41
1612 1664 2.424956 GCAGCCTTTCCCTACATTTCTG 59.575 50.000 0.00 0.00 0.00 3.02
1613 1665 2.728007 GCAGCCTTTCCCTACATTTCT 58.272 47.619 0.00 0.00 0.00 2.52
1614 1666 1.401905 CGCAGCCTTTCCCTACATTTC 59.598 52.381 0.00 0.00 0.00 2.17
1615 1667 1.271926 ACGCAGCCTTTCCCTACATTT 60.272 47.619 0.00 0.00 0.00 2.32
1616 1668 0.328258 ACGCAGCCTTTCCCTACATT 59.672 50.000 0.00 0.00 0.00 2.71
1617 1669 1.134491 GTACGCAGCCTTTCCCTACAT 60.134 52.381 0.00 0.00 0.00 2.29
1618 1670 0.248289 GTACGCAGCCTTTCCCTACA 59.752 55.000 0.00 0.00 0.00 2.74
1619 1671 0.248289 TGTACGCAGCCTTTCCCTAC 59.752 55.000 0.00 0.00 0.00 3.18
1620 1672 0.978151 TTGTACGCAGCCTTTCCCTA 59.022 50.000 0.00 0.00 0.00 3.53
1621 1673 0.328258 ATTGTACGCAGCCTTTCCCT 59.672 50.000 0.00 0.00 0.00 4.20
1622 1674 1.940613 CTATTGTACGCAGCCTTTCCC 59.059 52.381 0.00 0.00 0.00 3.97
1623 1675 2.608090 GTCTATTGTACGCAGCCTTTCC 59.392 50.000 0.00 0.00 0.00 3.13
1624 1676 2.608090 GGTCTATTGTACGCAGCCTTTC 59.392 50.000 0.00 0.00 0.00 2.62
1625 1677 2.629051 GGTCTATTGTACGCAGCCTTT 58.371 47.619 0.00 0.00 0.00 3.11
1626 1678 1.134491 GGGTCTATTGTACGCAGCCTT 60.134 52.381 0.00 0.00 0.00 4.35
1627 1679 0.464452 GGGTCTATTGTACGCAGCCT 59.536 55.000 0.00 0.00 0.00 4.58
1628 1680 0.177141 TGGGTCTATTGTACGCAGCC 59.823 55.000 0.00 0.00 35.18 4.85
1629 1681 2.018542 TTGGGTCTATTGTACGCAGC 57.981 50.000 0.00 0.00 40.36 5.25
1630 1682 3.370978 CACTTTGGGTCTATTGTACGCAG 59.629 47.826 0.00 0.00 40.36 5.18
1631 1683 3.331150 CACTTTGGGTCTATTGTACGCA 58.669 45.455 0.00 0.00 37.94 5.24
1632 1684 2.676342 CCACTTTGGGTCTATTGTACGC 59.324 50.000 0.00 0.00 32.67 4.42
1633 1685 3.934068 ACCACTTTGGGTCTATTGTACG 58.066 45.455 0.00 0.00 43.37 3.67
1643 1695 2.826003 GGGTCCGACCACTTTGGGT 61.826 63.158 19.43 0.00 43.37 4.51
1644 1696 2.033602 GGGTCCGACCACTTTGGG 59.966 66.667 19.43 0.00 43.37 4.12
1645 1697 0.605589 GAAGGGTCCGACCACTTTGG 60.606 60.000 19.43 0.00 41.02 3.28
1646 1698 0.605589 GGAAGGGTCCGACCACTTTG 60.606 60.000 19.43 0.00 41.02 2.77
1647 1699 1.759236 GGAAGGGTCCGACCACTTT 59.241 57.895 19.43 9.96 41.02 2.66
1648 1700 2.222013 GGGAAGGGTCCGACCACTT 61.222 63.158 19.43 17.88 46.04 3.16
1649 1701 2.606826 GGGAAGGGTCCGACCACT 60.607 66.667 19.43 10.80 46.04 4.00
1650 1702 3.714001 GGGGAAGGGTCCGACCAC 61.714 72.222 19.43 8.70 46.04 4.16
1651 1703 4.257810 TGGGGAAGGGTCCGACCA 62.258 66.667 19.43 0.00 46.04 4.02
1652 1704 3.400054 CTGGGGAAGGGTCCGACC 61.400 72.222 9.30 9.30 46.04 4.79
1653 1705 2.284405 TCTGGGGAAGGGTCCGAC 60.284 66.667 0.00 0.00 46.04 4.79
1654 1706 2.284405 GTCTGGGGAAGGGTCCGA 60.284 66.667 0.00 0.00 46.04 4.55
1655 1707 3.400054 GGTCTGGGGAAGGGTCCG 61.400 72.222 0.00 0.00 46.04 4.79
1656 1708 3.015753 GGGTCTGGGGAAGGGTCC 61.016 72.222 0.00 0.00 44.10 4.46
1657 1709 2.125225 AGGGTCTGGGGAAGGGTC 59.875 66.667 0.00 0.00 0.00 4.46
1658 1710 2.204151 CAGGGTCTGGGGAAGGGT 60.204 66.667 0.00 0.00 0.00 4.34
1659 1711 3.732849 GCAGGGTCTGGGGAAGGG 61.733 72.222 0.00 0.00 31.21 3.95
1660 1712 4.101448 CGCAGGGTCTGGGGAAGG 62.101 72.222 4.35 0.00 40.11 3.46
1661 1713 4.785453 GCGCAGGGTCTGGGGAAG 62.785 72.222 0.30 0.00 43.28 3.46
1673 1725 4.819761 TAGCTCCCGCTTGCGCAG 62.820 66.667 11.31 6.32 46.47 5.18
1676 1728 2.202932 ATGTAGCTCCCGCTTGCG 60.203 61.111 8.14 8.14 46.47 4.85
1677 1729 2.828128 GCATGTAGCTCCCGCTTGC 61.828 63.158 0.00 0.00 46.47 4.01
1678 1730 1.450134 TGCATGTAGCTCCCGCTTG 60.450 57.895 0.00 0.00 46.47 4.01
1679 1731 1.450312 GTGCATGTAGCTCCCGCTT 60.450 57.895 0.00 0.00 46.47 4.68
1681 1733 2.176273 CAGTGCATGTAGCTCCCGC 61.176 63.158 0.00 0.00 45.94 6.13
1682 1734 1.522355 CCAGTGCATGTAGCTCCCG 60.522 63.158 0.00 0.00 45.94 5.14
1683 1735 1.153086 CCCAGTGCATGTAGCTCCC 60.153 63.158 0.00 0.00 45.94 4.30
1684 1736 1.153086 CCCCAGTGCATGTAGCTCC 60.153 63.158 0.00 0.00 45.94 4.70
1685 1737 1.821332 GCCCCAGTGCATGTAGCTC 60.821 63.158 0.00 0.00 45.94 4.09
1686 1738 2.273449 GCCCCAGTGCATGTAGCT 59.727 61.111 0.00 0.00 45.94 3.32
1687 1739 2.117156 CAGCCCCAGTGCATGTAGC 61.117 63.158 0.00 0.00 45.96 3.58
1688 1740 2.117156 GCAGCCCCAGTGCATGTAG 61.117 63.158 0.00 0.00 40.86 2.74
1689 1741 2.045045 GCAGCCCCAGTGCATGTA 60.045 61.111 0.00 0.00 40.86 2.29
1700 1752 0.748367 GCAGTACTAAAGGGCAGCCC 60.748 60.000 24.90 24.90 45.90 5.19
1701 1753 0.035439 TGCAGTACTAAAGGGCAGCC 60.035 55.000 1.26 1.26 0.00 4.85
1702 1754 1.373570 CTGCAGTACTAAAGGGCAGC 58.626 55.000 16.44 5.14 44.45 5.25
1704 1756 4.714802 TCTATTCTGCAGTACTAAAGGGCA 59.285 41.667 14.67 0.00 0.00 5.36
1705 1757 5.163395 ACTCTATTCTGCAGTACTAAAGGGC 60.163 44.000 14.67 0.00 0.00 5.19
1706 1758 6.472686 ACTCTATTCTGCAGTACTAAAGGG 57.527 41.667 14.67 6.60 0.00 3.95
1707 1759 8.453238 TCTACTCTATTCTGCAGTACTAAAGG 57.547 38.462 14.67 1.66 0.00 3.11
1708 1760 9.332502 TCTCTACTCTATTCTGCAGTACTAAAG 57.667 37.037 14.67 8.21 0.00 1.85
1711 1763 7.071447 AGGTCTCTACTCTATTCTGCAGTACTA 59.929 40.741 14.67 3.26 0.00 1.82
1734 1786 4.566488 CCAGCCTTCTTCTATTTCACAGGT 60.566 45.833 0.00 0.00 0.00 4.00
1747 1799 2.025887 CCCATAACACTCCAGCCTTCTT 60.026 50.000 0.00 0.00 0.00 2.52
1758 1810 2.817839 GCCCTCAACAACCCATAACACT 60.818 50.000 0.00 0.00 0.00 3.55
1922 1974 7.405292 TCCTTCATGGACATTCTACAAAAGAT 58.595 34.615 0.00 0.00 40.56 2.40
2068 2123 9.589111 TCGTATTTGTACAATATTGCTGTTCTA 57.411 29.630 15.48 0.00 0.00 2.10
2072 2127 7.843490 AGTCGTATTTGTACAATATTGCTGT 57.157 32.000 15.48 0.00 0.00 4.40
2290 2360 3.843893 TGCTAGGCATCAAGCTGAATA 57.156 42.857 0.00 0.00 44.79 1.75
2501 2578 6.838806 GCGTTAGTTTTGTTTTATTTGCACTG 59.161 34.615 0.00 0.00 0.00 3.66
2502 2579 6.531948 TGCGTTAGTTTTGTTTTATTTGCACT 59.468 30.769 0.00 0.00 0.00 4.40
2503 2580 6.697152 TGCGTTAGTTTTGTTTTATTTGCAC 58.303 32.000 0.00 0.00 0.00 4.57
2504 2581 6.887376 TGCGTTAGTTTTGTTTTATTTGCA 57.113 29.167 0.00 0.00 0.00 4.08
2505 2582 9.511022 CTAATGCGTTAGTTTTGTTTTATTTGC 57.489 29.630 16.25 0.00 34.00 3.68
2595 2672 2.456577 AGTTTTGGTTCCACACTGCTT 58.543 42.857 3.00 0.00 0.00 3.91
2805 2883 7.518161 ACATATTGTTTCACGAATGTGTACAG 58.482 34.615 0.00 0.00 46.49 2.74
2863 2941 5.127519 AGCAGATTATTGCAAGCAATTACCA 59.872 36.000 23.48 4.86 46.47 3.25
2918 2996 0.908910 ACCGTGGATGCTTGACCATA 59.091 50.000 0.00 0.00 38.48 2.74
3372 3452 7.153985 AGTAGATTTGAGATCAATCAGCTAGC 58.846 38.462 6.62 6.62 35.55 3.42
3519 3682 3.724257 GCACTTCGTAGTTGTTTTGCTTC 59.276 43.478 0.00 0.00 30.26 3.86
3534 3697 5.827568 AATTTGTAAAAGCATGCACTTCG 57.172 34.783 21.98 0.00 0.00 3.79
3575 3738 7.430441 TGCGTACATATGTATCAAGAAAGCTA 58.570 34.615 18.27 0.20 32.54 3.32
3598 3761 5.986135 ACATATCTGAGGAACGAGTAATTGC 59.014 40.000 0.00 0.00 0.00 3.56
3772 3935 8.292448 GCATAACGAAATGGAGTTCATATGAAT 58.708 33.333 20.65 10.17 36.33 2.57
4012 4185 3.343617 TGGCTAAACTATTGCCTGTCAC 58.656 45.455 0.00 0.00 46.23 3.67
4016 4189 5.105392 TCCAAAATGGCTAAACTATTGCCTG 60.105 40.000 0.00 0.00 46.23 4.85
4271 4444 7.203910 AGTACGAGAATAACCTAGCATGAAAG 58.796 38.462 0.00 0.00 0.00 2.62
4345 4518 5.428457 TGATAGAAAGGCCAAGTCCAAGATA 59.572 40.000 5.01 0.00 0.00 1.98
4359 4532 6.929049 TCCTGCGTAACATTATGATAGAAAGG 59.071 38.462 0.00 0.00 0.00 3.11
4506 4679 6.573664 TGTCAAGTAATTTACATTGCTGCT 57.426 33.333 9.15 0.00 35.66 4.24
4618 4791 5.415701 GTGAGCACAAATCATTCTTTAGGGA 59.584 40.000 0.00 0.00 0.00 4.20
4711 4884 5.299148 GCATGAATCTATGAGCAGAAGACT 58.701 41.667 0.00 0.00 0.00 3.24
4767 4943 4.229876 GTCAAGCTTTTAACATGTGGAGC 58.770 43.478 0.00 7.00 0.00 4.70
4772 4948 3.315191 AGCACGTCAAGCTTTTAACATGT 59.685 39.130 0.00 0.00 39.87 3.21
4773 4949 3.665409 CAGCACGTCAAGCTTTTAACATG 59.335 43.478 0.00 0.00 41.14 3.21
4798 4974 3.003480 GGGAGTACAATGCTGTGAGAAC 58.997 50.000 0.00 0.00 36.96 3.01
4801 4977 2.499289 AGAGGGAGTACAATGCTGTGAG 59.501 50.000 0.00 0.00 36.96 3.51
4807 4983 4.575885 TGTTTACAGAGGGAGTACAATGC 58.424 43.478 0.00 0.00 0.00 3.56
4808 4984 7.174946 ACATTTGTTTACAGAGGGAGTACAATG 59.825 37.037 0.00 0.00 0.00 2.82
4812 4988 8.092687 TCTTACATTTGTTTACAGAGGGAGTAC 58.907 37.037 0.00 0.00 0.00 2.73
4822 4998 8.891720 ACCTAAAACGTCTTACATTTGTTTACA 58.108 29.630 0.00 0.00 32.84 2.41
4949 5132 5.306678 TCACAATTCCCCAAAAGCTATTGTT 59.693 36.000 4.81 0.00 34.89 2.83
4955 5138 3.494924 GCTTTCACAATTCCCCAAAAGCT 60.495 43.478 9.67 0.00 43.12 3.74
4967 5150 7.391148 AACATACCGATTTAGCTTTCACAAT 57.609 32.000 0.00 0.00 0.00 2.71
4988 5171 1.270785 TGGATCGAGCTCAGCAAAACA 60.271 47.619 15.40 0.00 0.00 2.83
5060 5304 5.738909 AGATGGAAGTACTGAAGTGAATGG 58.261 41.667 0.00 0.00 0.00 3.16
5094 5338 0.813184 ATTGGTGCAAAGGCTCATCG 59.187 50.000 0.00 0.00 41.91 3.84
5108 5352 3.902881 TGTTTGTTTGCCTTCATTGGT 57.097 38.095 0.00 0.00 0.00 3.67
5469 5713 0.108804 TGCTATAGGCGCCGAATAGC 60.109 55.000 40.90 40.90 45.37 2.97
5470 5714 1.914634 CTGCTATAGGCGCCGAATAG 58.085 55.000 31.62 31.62 45.43 1.73
5471 5715 0.108804 GCTGCTATAGGCGCCGAATA 60.109 55.000 23.20 20.87 45.43 1.75
5472 5716 1.374758 GCTGCTATAGGCGCCGAAT 60.375 57.895 23.20 20.87 45.43 3.34
5473 5717 2.029073 GCTGCTATAGGCGCCGAA 59.971 61.111 23.20 14.57 45.43 4.30
5474 5718 3.991051 GGCTGCTATAGGCGCCGA 61.991 66.667 23.20 18.26 45.05 5.54
5480 5724 2.767505 CCCTTTAACGGCTGCTATAGG 58.232 52.381 1.04 5.68 0.00 2.57
5481 5725 2.143925 GCCCTTTAACGGCTGCTATAG 58.856 52.381 0.00 0.00 43.48 1.31
5482 5726 2.249844 GCCCTTTAACGGCTGCTATA 57.750 50.000 0.00 0.00 43.48 1.31
5483 5727 3.095922 GCCCTTTAACGGCTGCTAT 57.904 52.632 0.00 0.00 43.48 2.97
5484 5728 4.629779 GCCCTTTAACGGCTGCTA 57.370 55.556 0.00 0.00 43.48 3.49
5490 5734 2.227149 GGTACAGTTTGCCCTTTAACGG 59.773 50.000 0.00 0.00 0.00 4.44
5491 5735 2.879646 TGGTACAGTTTGCCCTTTAACG 59.120 45.455 0.00 0.00 0.00 3.18
5506 5750 1.890041 GCGTTGTGTGCCTGGTACA 60.890 57.895 13.90 13.90 0.00 2.90
5507 5751 1.234615 ATGCGTTGTGTGCCTGGTAC 61.235 55.000 8.09 8.09 0.00 3.34
5508 5752 1.072332 ATGCGTTGTGTGCCTGGTA 59.928 52.632 0.00 0.00 0.00 3.25
5509 5753 2.203337 ATGCGTTGTGTGCCTGGT 60.203 55.556 0.00 0.00 0.00 4.00
5510 5754 1.588824 ATCATGCGTTGTGTGCCTGG 61.589 55.000 0.00 0.00 0.00 4.45
5511 5755 1.085893 TATCATGCGTTGTGTGCCTG 58.914 50.000 0.00 0.00 0.00 4.85
5512 5756 1.819928 TTATCATGCGTTGTGTGCCT 58.180 45.000 0.00 0.00 0.00 4.75
5513 5757 2.095263 ACTTTATCATGCGTTGTGTGCC 60.095 45.455 0.00 0.00 0.00 5.01
5514 5758 2.910482 CACTTTATCATGCGTTGTGTGC 59.090 45.455 0.00 0.00 0.00 4.57
5515 5759 3.491356 CCACTTTATCATGCGTTGTGTG 58.509 45.455 0.00 0.00 0.00 3.82
5516 5760 2.487762 CCCACTTTATCATGCGTTGTGT 59.512 45.455 0.00 0.00 0.00 3.72
5517 5761 2.731968 GCCCACTTTATCATGCGTTGTG 60.732 50.000 0.00 0.00 0.00 3.33
5518 5762 1.472480 GCCCACTTTATCATGCGTTGT 59.528 47.619 0.00 0.00 0.00 3.32
5519 5763 1.202290 GGCCCACTTTATCATGCGTTG 60.202 52.381 0.00 0.00 0.00 4.10
5520 5764 1.102978 GGCCCACTTTATCATGCGTT 58.897 50.000 0.00 0.00 0.00 4.84
5521 5765 1.095228 CGGCCCACTTTATCATGCGT 61.095 55.000 0.00 0.00 0.00 5.24
5522 5766 1.648720 CGGCCCACTTTATCATGCG 59.351 57.895 0.00 0.00 0.00 4.73
5523 5767 2.032981 CCGGCCCACTTTATCATGC 58.967 57.895 0.00 0.00 0.00 4.06
5524 5768 1.455383 GGCCGGCCCACTTTATCATG 61.455 60.000 36.64 0.00 0.00 3.07
5525 5769 1.152756 GGCCGGCCCACTTTATCAT 60.153 57.895 36.64 0.00 0.00 2.45
5526 5770 2.274104 GGCCGGCCCACTTTATCA 59.726 61.111 36.64 0.00 0.00 2.15
5527 5771 2.274104 TGGCCGGCCCACTTTATC 59.726 61.111 41.75 15.00 39.18 1.75
5538 5782 2.433491 TTCGACGTTCATGGCCGG 60.433 61.111 0.00 0.00 0.00 6.13
5539 5783 2.736682 GGTTCGACGTTCATGGCCG 61.737 63.158 0.00 0.00 0.00 6.13
5540 5784 1.024579 ATGGTTCGACGTTCATGGCC 61.025 55.000 0.00 0.00 0.00 5.36
5541 5785 0.802494 AATGGTTCGACGTTCATGGC 59.198 50.000 0.00 0.00 0.00 4.40
5542 5786 2.742053 AGAAATGGTTCGACGTTCATGG 59.258 45.455 0.00 0.00 38.90 3.66
5543 5787 3.424829 CCAGAAATGGTTCGACGTTCATG 60.425 47.826 0.00 0.00 38.90 3.07
5544 5788 2.742053 CCAGAAATGGTTCGACGTTCAT 59.258 45.455 0.00 0.00 38.90 2.57
5545 5789 2.139917 CCAGAAATGGTTCGACGTTCA 58.860 47.619 0.00 0.00 38.90 3.18
5546 5790 2.140717 ACCAGAAATGGTTCGACGTTC 58.859 47.619 0.00 0.00 39.57 3.95
5547 5791 2.249844 ACCAGAAATGGTTCGACGTT 57.750 45.000 0.00 0.00 39.57 3.99
5555 5799 3.317993 GCTACACACAAACCAGAAATGGT 59.682 43.478 0.00 0.00 45.55 3.55
5556 5800 3.569701 AGCTACACACAAACCAGAAATGG 59.430 43.478 0.00 0.00 0.00 3.16
5557 5801 4.836125 AGCTACACACAAACCAGAAATG 57.164 40.909 0.00 0.00 0.00 2.32
5558 5802 5.133221 AGAAGCTACACACAAACCAGAAAT 58.867 37.500 0.00 0.00 0.00 2.17
5559 5803 4.523083 AGAAGCTACACACAAACCAGAAA 58.477 39.130 0.00 0.00 0.00 2.52
5560 5804 4.150897 AGAAGCTACACACAAACCAGAA 57.849 40.909 0.00 0.00 0.00 3.02
5561 5805 3.838244 AGAAGCTACACACAAACCAGA 57.162 42.857 0.00 0.00 0.00 3.86
5562 5806 3.433615 GCTAGAAGCTACACACAAACCAG 59.566 47.826 0.00 0.00 38.45 4.00
5563 5807 3.399330 GCTAGAAGCTACACACAAACCA 58.601 45.455 0.00 0.00 38.45 3.67
5564 5808 2.742589 GGCTAGAAGCTACACACAAACC 59.257 50.000 0.00 0.00 41.99 3.27
5565 5809 2.412089 CGGCTAGAAGCTACACACAAAC 59.588 50.000 0.00 0.00 41.99 2.93
5566 5810 2.611971 CCGGCTAGAAGCTACACACAAA 60.612 50.000 0.00 0.00 41.99 2.83
5567 5811 1.067142 CCGGCTAGAAGCTACACACAA 60.067 52.381 0.00 0.00 41.99 3.33
5568 5812 0.530744 CCGGCTAGAAGCTACACACA 59.469 55.000 0.00 0.00 41.99 3.72
5569 5813 0.531200 ACCGGCTAGAAGCTACACAC 59.469 55.000 0.00 0.00 41.99 3.82
5570 5814 1.263356 AACCGGCTAGAAGCTACACA 58.737 50.000 0.00 0.00 41.99 3.72
5571 5815 2.381725 AAACCGGCTAGAAGCTACAC 57.618 50.000 0.00 0.00 41.99 2.90
5572 5816 2.614481 CCAAAACCGGCTAGAAGCTACA 60.614 50.000 0.00 0.00 41.99 2.74
5573 5817 2.007608 CCAAAACCGGCTAGAAGCTAC 58.992 52.381 0.00 0.00 41.99 3.58
5574 5818 2.396590 CCAAAACCGGCTAGAAGCTA 57.603 50.000 0.00 0.00 41.99 3.32
5575 5819 3.249687 CCAAAACCGGCTAGAAGCT 57.750 52.632 0.00 0.00 41.99 3.74
5584 5828 3.770625 AAAAACTGGCCAAAACCGG 57.229 47.368 7.01 0.00 42.28 5.28
5614 5858 9.809096 GAAAAGAGAAGAAGGAAACAGAAAAAT 57.191 29.630 0.00 0.00 0.00 1.82
5615 5859 8.802267 TGAAAAGAGAAGAAGGAAACAGAAAAA 58.198 29.630 0.00 0.00 0.00 1.94
5616 5860 8.348285 TGAAAAGAGAAGAAGGAAACAGAAAA 57.652 30.769 0.00 0.00 0.00 2.29
5617 5861 7.938140 TGAAAAGAGAAGAAGGAAACAGAAA 57.062 32.000 0.00 0.00 0.00 2.52
5618 5862 8.525290 AATGAAAAGAGAAGAAGGAAACAGAA 57.475 30.769 0.00 0.00 0.00 3.02
5619 5863 8.525290 AAATGAAAAGAGAAGAAGGAAACAGA 57.475 30.769 0.00 0.00 0.00 3.41


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.