Multiple sequence alignment - TraesCS4B01G074200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G074200 chr4B 100.000 5302 0 0 1 5302 69385290 69379989 0.000000e+00 9792.0
1 TraesCS4B01G074200 chr4B 95.604 91 4 0 1437 1527 50445590 50445500 4.280000e-31 147.0
2 TraesCS4B01G074200 chr4B 94.624 93 5 0 1439 1531 603516258 603516350 1.540000e-30 145.0
3 TraesCS4B01G074200 chr4B 82.759 87 15 0 437 523 32183571 32183657 1.580000e-10 78.7
4 TraesCS4B01G074200 chr4D 93.641 2296 89 17 1520 3791 47529869 47532131 0.000000e+00 3378.0
5 TraesCS4B01G074200 chr4D 89.985 1318 75 27 4004 5302 47533379 47534658 0.000000e+00 1650.0
6 TraesCS4B01G074200 chr4D 85.995 864 63 29 525 1344 47528807 47529656 0.000000e+00 872.0
7 TraesCS4B01G074200 chr4D 95.652 92 4 0 1349 1440 47529782 47529873 1.190000e-31 148.0
8 TraesCS4B01G074200 chr4D 91.667 60 5 0 464 523 13604444 13604503 3.400000e-12 84.2
9 TraesCS4B01G074200 chr4D 82.353 85 14 1 439 523 19554286 19554369 7.370000e-09 73.1
10 TraesCS4B01G074200 chr4A 90.461 1237 88 11 1521 2733 550476968 550478198 0.000000e+00 1604.0
11 TraesCS4B01G074200 chr4A 90.323 682 33 13 3985 4659 550480046 550480701 0.000000e+00 863.0
12 TraesCS4B01G074200 chr4A 87.482 687 44 20 4647 5302 550480780 550481455 0.000000e+00 754.0
13 TraesCS4B01G074200 chr4A 81.702 858 122 21 2803 3630 550478197 550479049 0.000000e+00 682.0
14 TraesCS4B01G074200 chr4A 89.788 519 26 11 859 1357 550476092 550476603 1.610000e-179 640.0
15 TraesCS4B01G074200 chr4A 95.652 92 4 0 1349 1440 550476880 550476971 1.190000e-31 148.0
16 TraesCS4B01G074200 chr4A 75.238 315 45 10 138 422 550475225 550475536 9.330000e-23 119.0
17 TraesCS4B01G074200 chr4A 92.857 70 5 0 454 523 537537535 537537466 9.390000e-18 102.0
18 TraesCS4B01G074200 chr2A 94.059 101 5 1 1437 1536 438726342 438726442 9.200000e-33 152.0
19 TraesCS4B01G074200 chr6D 94.792 96 3 2 1435 1528 119342004 119342099 1.190000e-31 148.0
20 TraesCS4B01G074200 chr6D 93.478 46 3 0 3783 3828 152189342 152189387 9.530000e-08 69.4
21 TraesCS4B01G074200 chr3D 94.737 95 4 1 1439 1533 415158368 415158275 4.280000e-31 147.0
22 TraesCS4B01G074200 chr5A 92.929 99 7 0 1437 1535 62190442 62190344 1.540000e-30 145.0
23 TraesCS4B01G074200 chr5A 92.473 93 7 0 1439 1531 363922483 363922391 3.330000e-27 134.0
24 TraesCS4B01G074200 chr5A 88.406 69 8 0 455 523 120744740 120744672 3.400000e-12 84.2
25 TraesCS4B01G074200 chr7B 93.684 95 6 0 1430 1524 334323881 334323975 5.540000e-30 143.0
26 TraesCS4B01G074200 chr3A 93.684 95 6 0 1438 1532 602764859 602764765 5.540000e-30 143.0
27 TraesCS4B01G074200 chr1A 82.099 162 19 5 570 722 2839990 2839830 4.310000e-26 130.0
28 TraesCS4B01G074200 chr1A 81.720 93 16 1 431 522 449845674 449845766 5.690000e-10 76.8
29 TraesCS4B01G074200 chr7D 82.394 142 17 5 588 722 420766500 420766360 3.350000e-22 117.0
30 TraesCS4B01G074200 chr3B 91.803 61 5 0 463 523 487782796 487782736 9.460000e-13 86.1
31 TraesCS4B01G074200 chr3B 80.198 101 19 1 528 627 31327678 31327578 2.050000e-09 75.0
32 TraesCS4B01G074200 chr1D 88.406 69 8 0 454 522 218683985 218683917 3.400000e-12 84.2
33 TraesCS4B01G074200 chr5B 76.923 156 27 7 525 675 603987109 603986958 4.400000e-11 80.5
34 TraesCS4B01G074200 chr1B 86.957 69 9 0 454 522 312555083 312555015 1.580000e-10 78.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G074200 chr4B 69379989 69385290 5301 True 9792.000000 9792 100.000000 1 5302 1 chr4B.!!$R2 5301
1 TraesCS4B01G074200 chr4D 47528807 47534658 5851 False 1512.000000 3378 91.318250 525 5302 4 chr4D.!!$F3 4777
2 TraesCS4B01G074200 chr4A 550475225 550481455 6230 False 687.142857 1604 87.235143 138 5302 7 chr4A.!!$F1 5164

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
424 454 0.036448 TCTTCCTCGAGTCCGTCTGT 59.964 55.0 12.31 0.0 37.05 3.41 F
2223 2736 0.030638 GGCACGCTGTGTTCATGTTT 59.969 50.0 9.76 0.0 35.75 2.83 F
3849 5553 0.179001 ACCGTTTGCTTGTAGGCCTT 60.179 50.0 12.58 0.0 0.00 4.35 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2419 2936 0.389948 AGTTCGGATCGAAGCCACAC 60.390 55.0 2.83 4.01 46.54 3.82 R
3942 6229 0.254178 CCTCCTCCATGGACCAAGTG 59.746 60.0 11.44 0.00 40.56 3.16 R
4688 7396 0.110486 AACAGGGGTGCACCTAGTTG 59.890 55.0 33.91 25.76 39.34 3.16 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 3.328382 CGTGATGGTTGGAAGTAGGAA 57.672 47.619 0.00 0.00 0.00 3.36
21 22 3.670625 CGTGATGGTTGGAAGTAGGAAA 58.329 45.455 0.00 0.00 0.00 3.13
22 23 4.069304 CGTGATGGTTGGAAGTAGGAAAA 58.931 43.478 0.00 0.00 0.00 2.29
23 24 4.517453 CGTGATGGTTGGAAGTAGGAAAAA 59.483 41.667 0.00 0.00 0.00 1.94
24 25 5.562113 CGTGATGGTTGGAAGTAGGAAAAAC 60.562 44.000 0.00 0.00 0.00 2.43
25 26 5.300792 GTGATGGTTGGAAGTAGGAAAAACA 59.699 40.000 0.00 0.00 0.00 2.83
26 27 6.015434 GTGATGGTTGGAAGTAGGAAAAACAT 60.015 38.462 0.00 0.00 31.03 2.71
27 28 6.208599 TGATGGTTGGAAGTAGGAAAAACATC 59.791 38.462 5.08 5.08 42.59 3.06
28 29 5.701224 TGGTTGGAAGTAGGAAAAACATCT 58.299 37.500 0.00 0.00 0.00 2.90
29 30 5.768164 TGGTTGGAAGTAGGAAAAACATCTC 59.232 40.000 0.00 0.00 0.00 2.75
30 31 5.106673 GGTTGGAAGTAGGAAAAACATCTCG 60.107 44.000 0.00 0.00 0.00 4.04
31 32 5.223449 TGGAAGTAGGAAAAACATCTCGT 57.777 39.130 0.00 0.00 0.00 4.18
32 33 6.349243 TGGAAGTAGGAAAAACATCTCGTA 57.651 37.500 0.00 0.00 0.00 3.43
33 34 6.761312 TGGAAGTAGGAAAAACATCTCGTAA 58.239 36.000 0.00 0.00 0.00 3.18
34 35 7.391620 TGGAAGTAGGAAAAACATCTCGTAAT 58.608 34.615 0.00 0.00 0.00 1.89
35 36 7.548075 TGGAAGTAGGAAAAACATCTCGTAATC 59.452 37.037 0.00 0.00 0.00 1.75
36 37 7.548075 GGAAGTAGGAAAAACATCTCGTAATCA 59.452 37.037 0.00 0.00 0.00 2.57
37 38 9.099454 GAAGTAGGAAAAACATCTCGTAATCAT 57.901 33.333 0.00 0.00 0.00 2.45
42 43 9.838339 AGGAAAAACATCTCGTAATCATATCTT 57.162 29.630 0.00 0.00 0.00 2.40
43 44 9.869844 GGAAAAACATCTCGTAATCATATCTTG 57.130 33.333 0.00 0.00 0.00 3.02
46 47 9.599866 AAAACATCTCGTAATCATATCTTGTCA 57.400 29.630 0.00 0.00 0.00 3.58
47 48 8.581057 AACATCTCGTAATCATATCTTGTCAC 57.419 34.615 0.00 0.00 0.00 3.67
48 49 7.716612 ACATCTCGTAATCATATCTTGTCACA 58.283 34.615 0.00 0.00 0.00 3.58
49 50 8.363390 ACATCTCGTAATCATATCTTGTCACAT 58.637 33.333 0.00 0.00 0.00 3.21
50 51 8.645487 CATCTCGTAATCATATCTTGTCACATG 58.355 37.037 0.00 0.00 0.00 3.21
51 52 7.940850 TCTCGTAATCATATCTTGTCACATGA 58.059 34.615 0.00 0.00 32.32 3.07
52 53 8.078596 TCTCGTAATCATATCTTGTCACATGAG 58.921 37.037 0.00 0.00 31.35 2.90
53 54 7.940850 TCGTAATCATATCTTGTCACATGAGA 58.059 34.615 0.00 0.00 31.35 3.27
54 55 8.579863 TCGTAATCATATCTTGTCACATGAGAT 58.420 33.333 0.00 0.00 34.67 2.75
55 56 8.858186 CGTAATCATATCTTGTCACATGAGATC 58.142 37.037 0.00 0.00 32.68 2.75
56 57 9.149225 GTAATCATATCTTGTCACATGAGATCC 57.851 37.037 0.00 0.00 32.68 3.36
57 58 6.106648 TCATATCTTGTCACATGAGATCCC 57.893 41.667 0.00 0.00 32.68 3.85
58 59 5.603813 TCATATCTTGTCACATGAGATCCCA 59.396 40.000 0.00 0.00 32.68 4.37
59 60 3.900966 TCTTGTCACATGAGATCCCAG 57.099 47.619 0.00 0.00 0.00 4.45
60 61 2.502947 TCTTGTCACATGAGATCCCAGG 59.497 50.000 0.00 0.00 0.00 4.45
61 62 1.956869 TGTCACATGAGATCCCAGGT 58.043 50.000 0.00 0.00 0.00 4.00
62 63 2.269023 TGTCACATGAGATCCCAGGTT 58.731 47.619 0.00 0.00 0.00 3.50
63 64 2.237143 TGTCACATGAGATCCCAGGTTC 59.763 50.000 0.00 0.00 0.00 3.62
64 65 1.839994 TCACATGAGATCCCAGGTTCC 59.160 52.381 0.00 0.00 0.00 3.62
65 66 1.133976 CACATGAGATCCCAGGTTCCC 60.134 57.143 0.00 0.00 0.00 3.97
66 67 0.475906 CATGAGATCCCAGGTTCCCC 59.524 60.000 0.00 0.00 0.00 4.81
67 68 0.348370 ATGAGATCCCAGGTTCCCCT 59.652 55.000 0.00 0.00 44.02 4.79
68 69 0.121197 TGAGATCCCAGGTTCCCCTT 59.879 55.000 0.00 0.00 39.89 3.95
69 70 0.840617 GAGATCCCAGGTTCCCCTTC 59.159 60.000 0.00 0.00 39.89 3.46
70 71 0.121197 AGATCCCAGGTTCCCCTTCA 59.879 55.000 0.00 0.00 39.89 3.02
71 72 0.999712 GATCCCAGGTTCCCCTTCAA 59.000 55.000 0.00 0.00 39.89 2.69
72 73 1.357761 GATCCCAGGTTCCCCTTCAAA 59.642 52.381 0.00 0.00 39.89 2.69
73 74 0.481128 TCCCAGGTTCCCCTTCAAAC 59.519 55.000 0.00 0.00 39.89 2.93
74 75 0.541998 CCCAGGTTCCCCTTCAAACC 60.542 60.000 0.00 0.00 44.36 3.27
77 78 3.051617 GGTTCCCCTTCAAACCTGG 57.948 57.895 0.00 0.00 41.44 4.45
78 79 1.185618 GGTTCCCCTTCAAACCTGGC 61.186 60.000 0.00 0.00 41.44 4.85
79 80 0.178961 GTTCCCCTTCAAACCTGGCT 60.179 55.000 0.00 0.00 0.00 4.75
80 81 0.560688 TTCCCCTTCAAACCTGGCTT 59.439 50.000 0.00 0.00 0.00 4.35
81 82 0.112412 TCCCCTTCAAACCTGGCTTC 59.888 55.000 0.00 0.00 0.00 3.86
82 83 0.178964 CCCCTTCAAACCTGGCTTCA 60.179 55.000 0.00 0.00 0.00 3.02
83 84 1.550869 CCCCTTCAAACCTGGCTTCAT 60.551 52.381 0.00 0.00 0.00 2.57
84 85 2.291540 CCCCTTCAAACCTGGCTTCATA 60.292 50.000 0.00 0.00 0.00 2.15
85 86 3.019564 CCCTTCAAACCTGGCTTCATAG 58.980 50.000 0.00 0.00 0.00 2.23
86 87 3.562176 CCCTTCAAACCTGGCTTCATAGT 60.562 47.826 0.00 0.00 0.00 2.12
87 88 4.324254 CCCTTCAAACCTGGCTTCATAGTA 60.324 45.833 0.00 0.00 0.00 1.82
88 89 4.878397 CCTTCAAACCTGGCTTCATAGTAG 59.122 45.833 0.00 0.00 0.00 2.57
89 90 3.873910 TCAAACCTGGCTTCATAGTAGC 58.126 45.455 0.00 0.00 37.91 3.58
99 100 5.207110 GCTTCATAGTAGCCATGAGAAGA 57.793 43.478 0.00 0.00 34.07 2.87
100 101 5.605534 GCTTCATAGTAGCCATGAGAAGAA 58.394 41.667 0.00 0.00 34.07 2.52
101 102 6.051717 GCTTCATAGTAGCCATGAGAAGAAA 58.948 40.000 0.00 0.00 34.07 2.52
102 103 6.709846 GCTTCATAGTAGCCATGAGAAGAAAT 59.290 38.462 0.00 0.00 34.07 2.17
103 104 7.875041 GCTTCATAGTAGCCATGAGAAGAAATA 59.125 37.037 0.00 0.00 34.07 1.40
104 105 9.770097 CTTCATAGTAGCCATGAGAAGAAATAA 57.230 33.333 0.00 0.00 34.07 1.40
105 106 9.547753 TTCATAGTAGCCATGAGAAGAAATAAC 57.452 33.333 0.00 0.00 34.07 1.89
106 107 8.928448 TCATAGTAGCCATGAGAAGAAATAACT 58.072 33.333 0.00 0.00 0.00 2.24
107 108 9.202273 CATAGTAGCCATGAGAAGAAATAACTC 57.798 37.037 0.00 0.00 0.00 3.01
108 109 7.430760 AGTAGCCATGAGAAGAAATAACTCT 57.569 36.000 0.00 0.00 0.00 3.24
109 110 7.271511 AGTAGCCATGAGAAGAAATAACTCTG 58.728 38.462 0.00 0.00 0.00 3.35
110 111 6.059787 AGCCATGAGAAGAAATAACTCTGT 57.940 37.500 0.00 0.00 0.00 3.41
111 112 6.112058 AGCCATGAGAAGAAATAACTCTGTC 58.888 40.000 0.00 0.00 0.00 3.51
112 113 5.877012 GCCATGAGAAGAAATAACTCTGTCA 59.123 40.000 0.00 0.00 0.00 3.58
113 114 6.036953 GCCATGAGAAGAAATAACTCTGTCAG 59.963 42.308 0.00 0.00 0.00 3.51
114 115 6.538021 CCATGAGAAGAAATAACTCTGTCAGG 59.462 42.308 0.00 0.00 0.00 3.86
115 116 6.672266 TGAGAAGAAATAACTCTGTCAGGT 57.328 37.500 0.00 0.00 0.00 4.00
116 117 6.692486 TGAGAAGAAATAACTCTGTCAGGTC 58.308 40.000 0.00 0.00 0.00 3.85
117 118 6.267699 TGAGAAGAAATAACTCTGTCAGGTCA 59.732 38.462 0.00 0.00 0.00 4.02
118 119 7.038729 TGAGAAGAAATAACTCTGTCAGGTCAT 60.039 37.037 0.00 0.00 0.00 3.06
119 120 8.367660 AGAAGAAATAACTCTGTCAGGTCATA 57.632 34.615 0.00 0.00 0.00 2.15
120 121 8.986991 AGAAGAAATAACTCTGTCAGGTCATAT 58.013 33.333 0.00 0.00 0.00 1.78
121 122 9.606631 GAAGAAATAACTCTGTCAGGTCATATT 57.393 33.333 0.00 0.00 0.00 1.28
122 123 9.965902 AAGAAATAACTCTGTCAGGTCATATTT 57.034 29.630 0.00 6.74 0.00 1.40
123 124 9.388506 AGAAATAACTCTGTCAGGTCATATTTG 57.611 33.333 13.60 0.00 0.00 2.32
124 125 8.511604 AAATAACTCTGTCAGGTCATATTTGG 57.488 34.615 0.00 0.00 0.00 3.28
125 126 5.505181 AACTCTGTCAGGTCATATTTGGT 57.495 39.130 0.00 0.00 0.00 3.67
126 127 6.620877 AACTCTGTCAGGTCATATTTGGTA 57.379 37.500 0.00 0.00 0.00 3.25
127 128 6.227298 ACTCTGTCAGGTCATATTTGGTAG 57.773 41.667 0.00 0.00 0.00 3.18
128 129 5.129485 ACTCTGTCAGGTCATATTTGGTAGG 59.871 44.000 0.00 0.00 0.00 3.18
129 130 5.277250 TCTGTCAGGTCATATTTGGTAGGA 58.723 41.667 0.00 0.00 0.00 2.94
130 131 5.905331 TCTGTCAGGTCATATTTGGTAGGAT 59.095 40.000 0.00 0.00 0.00 3.24
131 132 6.386927 TCTGTCAGGTCATATTTGGTAGGATT 59.613 38.462 0.00 0.00 0.00 3.01
132 133 6.591935 TGTCAGGTCATATTTGGTAGGATTC 58.408 40.000 0.00 0.00 0.00 2.52
133 134 5.696724 GTCAGGTCATATTTGGTAGGATTCG 59.303 44.000 0.00 0.00 0.00 3.34
134 135 4.997395 CAGGTCATATTTGGTAGGATTCGG 59.003 45.833 0.00 0.00 0.00 4.30
135 136 3.751698 GGTCATATTTGGTAGGATTCGGC 59.248 47.826 0.00 0.00 0.00 5.54
136 137 4.505039 GGTCATATTTGGTAGGATTCGGCT 60.505 45.833 0.00 0.00 0.00 5.52
150 151 2.420568 CGGCTGCAATTCTGGGCAT 61.421 57.895 0.50 0.00 39.65 4.40
151 152 1.440476 GGCTGCAATTCTGGGCATC 59.560 57.895 0.50 0.00 39.65 3.91
155 156 1.136305 CTGCAATTCTGGGCATCCTTG 59.864 52.381 0.00 0.00 39.65 3.61
161 162 2.787473 TCTGGGCATCCTTGTGTTAG 57.213 50.000 0.00 0.00 0.00 2.34
181 182 2.091333 AGGGTGTGGGAAACAAATCACT 60.091 45.455 0.00 0.00 41.57 3.41
186 187 5.010282 GTGTGGGAAACAAATCACTAGGAT 58.990 41.667 0.00 0.00 41.57 3.24
188 189 6.316390 GTGTGGGAAACAAATCACTAGGATAG 59.684 42.308 0.00 0.00 42.43 2.08
218 231 4.701651 TGATTCTCCTTCCATCATCCAG 57.298 45.455 0.00 0.00 0.00 3.86
219 232 4.042884 TGATTCTCCTTCCATCATCCAGT 58.957 43.478 0.00 0.00 0.00 4.00
226 239 3.539604 CTTCCATCATCCAGTCTTCACC 58.460 50.000 0.00 0.00 0.00 4.02
227 240 2.550175 TCCATCATCCAGTCTTCACCA 58.450 47.619 0.00 0.00 0.00 4.17
228 241 2.912295 TCCATCATCCAGTCTTCACCAA 59.088 45.455 0.00 0.00 0.00 3.67
234 247 2.589720 TCCAGTCTTCACCAACGAGTA 58.410 47.619 0.00 0.00 0.00 2.59
236 249 3.056821 TCCAGTCTTCACCAACGAGTATG 60.057 47.826 0.00 0.00 0.00 2.39
237 250 3.306088 CCAGTCTTCACCAACGAGTATGT 60.306 47.826 0.00 0.00 0.00 2.29
238 251 3.675225 CAGTCTTCACCAACGAGTATGTG 59.325 47.826 0.00 0.00 0.00 3.21
239 252 2.993899 GTCTTCACCAACGAGTATGTGG 59.006 50.000 0.00 0.00 0.00 4.17
240 253 2.894765 TCTTCACCAACGAGTATGTGGA 59.105 45.455 0.00 0.00 0.00 4.02
248 275 1.067212 ACGAGTATGTGGATTCGCCTC 59.933 52.381 0.00 0.00 36.58 4.70
250 277 0.759346 AGTATGTGGATTCGCCTCCC 59.241 55.000 1.25 0.00 37.63 4.30
260 287 4.803908 CGCCTCCCCTTTGCCTCC 62.804 72.222 0.00 0.00 0.00 4.30
261 288 3.342477 GCCTCCCCTTTGCCTCCT 61.342 66.667 0.00 0.00 0.00 3.69
265 292 2.044551 CCCCTTTGCCTCCTGCTC 60.045 66.667 0.00 0.00 42.00 4.26
267 294 2.759114 CCTTTGCCTCCTGCTCCA 59.241 61.111 0.00 0.00 42.00 3.86
268 295 1.075482 CCTTTGCCTCCTGCTCCAA 59.925 57.895 0.00 0.00 42.00 3.53
280 307 2.662596 CTCCAACGGCTGGTAGCA 59.337 61.111 0.00 0.00 46.51 3.49
283 310 2.436646 CAACGGCTGGTAGCAGGG 60.437 66.667 22.69 0.17 44.75 4.45
285 312 2.660064 AACGGCTGGTAGCAGGGAG 61.660 63.158 22.69 0.00 44.75 4.30
287 314 2.365635 GGCTGGTAGCAGGGAGGA 60.366 66.667 22.69 0.00 44.75 3.71
289 316 3.100503 GCTGGTAGCAGGGAGGAGC 62.101 68.421 22.69 4.23 41.89 4.70
293 320 0.548510 GGTAGCAGGGAGGAGCATTT 59.451 55.000 0.00 0.00 0.00 2.32
299 326 0.779997 AGGGAGGAGCATTTTGGTGT 59.220 50.000 0.00 0.00 0.00 4.16
300 327 1.177401 GGGAGGAGCATTTTGGTGTC 58.823 55.000 0.00 0.00 0.00 3.67
304 331 1.425066 AGGAGCATTTTGGTGTCTCCA 59.575 47.619 8.99 0.00 45.60 3.86
316 343 4.476297 TGGTGTCTCCACTCTTGTTAGTA 58.524 43.478 0.00 0.00 41.93 1.82
325 352 7.176340 TCTCCACTCTTGTTAGTAGTTTAGGTC 59.824 40.741 0.00 0.00 0.00 3.85
328 355 7.255871 CCACTCTTGTTAGTAGTTTAGGTCAGT 60.256 40.741 0.00 0.00 0.00 3.41
366 396 4.494811 CGCAACGCTGGACAGATA 57.505 55.556 3.00 0.00 0.00 1.98
367 397 2.291843 CGCAACGCTGGACAGATAG 58.708 57.895 3.00 0.00 0.00 2.08
368 398 1.756375 CGCAACGCTGGACAGATAGC 61.756 60.000 3.00 0.57 36.60 2.97
372 402 2.501128 GCTGGACAGATAGCGGCA 59.499 61.111 1.45 0.00 0.00 5.69
373 403 1.884926 GCTGGACAGATAGCGGCAC 60.885 63.158 1.45 0.00 0.00 5.01
374 404 1.819229 CTGGACAGATAGCGGCACT 59.181 57.895 1.45 0.00 0.00 4.40
375 405 0.176680 CTGGACAGATAGCGGCACTT 59.823 55.000 1.45 0.00 0.00 3.16
395 425 7.095229 GGCACTTTTTCTTCAAGTTTGTCTTTT 60.095 33.333 0.00 0.00 31.83 2.27
399 429 5.337578 TTCTTCAAGTTTGTCTTTTGGGG 57.662 39.130 0.00 0.00 33.63 4.96
406 436 3.568430 AGTTTGTCTTTTGGGGTTCGATC 59.432 43.478 0.00 0.00 0.00 3.69
407 437 3.502123 TTGTCTTTTGGGGTTCGATCT 57.498 42.857 0.00 0.00 0.00 2.75
411 441 2.642807 TCTTTTGGGGTTCGATCTTCCT 59.357 45.455 0.00 0.00 0.00 3.36
422 452 1.670791 GATCTTCCTCGAGTCCGTCT 58.329 55.000 12.31 0.00 37.05 4.18
424 454 0.036448 TCTTCCTCGAGTCCGTCTGT 59.964 55.000 12.31 0.00 37.05 3.41
425 455 0.882474 CTTCCTCGAGTCCGTCTGTT 59.118 55.000 12.31 0.00 37.05 3.16
429 459 0.388649 CTCGAGTCCGTCTGTTTGGG 60.389 60.000 3.62 0.00 37.05 4.12
430 460 1.111116 TCGAGTCCGTCTGTTTGGGT 61.111 55.000 0.00 0.00 37.05 4.51
431 461 0.249741 CGAGTCCGTCTGTTTGGGTT 60.250 55.000 0.00 0.00 0.00 4.11
432 462 1.808891 CGAGTCCGTCTGTTTGGGTTT 60.809 52.381 0.00 0.00 0.00 3.27
433 463 1.871676 GAGTCCGTCTGTTTGGGTTTC 59.128 52.381 0.00 0.00 0.00 2.78
434 464 1.210967 AGTCCGTCTGTTTGGGTTTCA 59.789 47.619 0.00 0.00 0.00 2.69
435 465 1.602377 GTCCGTCTGTTTGGGTTTCAG 59.398 52.381 0.00 0.00 0.00 3.02
438 468 1.021968 GTCTGTTTGGGTTTCAGCGT 58.978 50.000 0.00 0.00 0.00 5.07
440 470 1.134220 TCTGTTTGGGTTTCAGCGTCT 60.134 47.619 0.00 0.00 0.00 4.18
441 471 1.264288 CTGTTTGGGTTTCAGCGTCTC 59.736 52.381 0.00 0.00 0.00 3.36
442 472 0.591659 GTTTGGGTTTCAGCGTCTCC 59.408 55.000 0.00 0.00 0.00 3.71
443 473 0.472471 TTTGGGTTTCAGCGTCTCCT 59.528 50.000 0.00 0.00 0.00 3.69
444 474 0.472471 TTGGGTTTCAGCGTCTCCTT 59.528 50.000 0.00 0.00 0.00 3.36
446 476 0.875059 GGGTTTCAGCGTCTCCTTTG 59.125 55.000 0.00 0.00 0.00 2.77
447 477 0.238553 GGTTTCAGCGTCTCCTTTGC 59.761 55.000 0.00 0.00 0.00 3.68
448 478 0.944386 GTTTCAGCGTCTCCTTTGCA 59.056 50.000 0.00 0.00 0.00 4.08
449 479 0.944386 TTTCAGCGTCTCCTTTGCAC 59.056 50.000 0.00 0.00 0.00 4.57
450 480 1.221466 TTCAGCGTCTCCTTTGCACG 61.221 55.000 0.00 0.00 36.60 5.34
451 481 1.664649 CAGCGTCTCCTTTGCACGA 60.665 57.895 0.00 0.00 35.49 4.35
452 482 1.373497 AGCGTCTCCTTTGCACGAG 60.373 57.895 0.00 0.00 35.49 4.18
459 516 0.250295 TCCTTTGCACGAGGAGGTTG 60.250 55.000 12.83 0.00 38.37 3.77
461 518 1.228124 TTTGCACGAGGAGGTTGGG 60.228 57.895 0.00 0.00 0.00 4.12
472 529 1.679032 GGAGGTTGGGGTTTCTCATCG 60.679 57.143 0.00 0.00 0.00 3.84
474 531 1.165270 GGTTGGGGTTTCTCATCGTG 58.835 55.000 0.00 0.00 0.00 4.35
479 536 0.605319 GGGTTTCTCATCGTGTGGCA 60.605 55.000 0.00 0.00 0.00 4.92
489 546 2.552599 TCGTGTGGCAAGATTTGGTA 57.447 45.000 0.00 0.00 0.00 3.25
491 548 3.417101 TCGTGTGGCAAGATTTGGTATT 58.583 40.909 0.00 0.00 0.00 1.89
509 566 9.613428 TTTGGTATTAGGTGTTTCAGATCTATG 57.387 33.333 0.00 0.00 0.00 2.23
510 567 7.217200 TGGTATTAGGTGTTTCAGATCTATGC 58.783 38.462 0.00 0.00 0.00 3.14
523 580 2.851263 TCTATGCAAGGGTTCAACGT 57.149 45.000 0.00 0.00 0.00 3.99
545 640 0.178068 GCATGAAGACTTCCCGGCTA 59.822 55.000 12.66 0.00 0.00 3.93
548 643 0.744874 TGAAGACTTCCCGGCTATCG 59.255 55.000 12.66 0.00 38.88 2.92
553 648 0.822532 ACTTCCCGGCTATCGTCGAT 60.823 55.000 13.16 13.16 41.73 3.59
557 652 1.162698 CCCGGCTATCGTCGATAAGA 58.837 55.000 15.46 0.00 41.73 2.10
563 659 4.201832 CGGCTATCGTCGATAAGATAAGCT 60.202 45.833 19.47 0.00 41.73 3.74
564 660 5.006455 CGGCTATCGTCGATAAGATAAGCTA 59.994 44.000 19.47 0.00 41.73 3.32
566 662 6.423862 GCTATCGTCGATAAGATAAGCTAGG 58.576 44.000 15.46 1.71 0.00 3.02
580 676 1.746322 GCTAGGTTCGGTAGGGGAGC 61.746 65.000 0.00 0.00 0.00 4.70
631 727 1.589803 GTGGCAGTAGTGGTCGTTTT 58.410 50.000 0.00 0.00 0.00 2.43
640 736 0.580104 GTGGTCGTTTTGTGGTCTCG 59.420 55.000 0.00 0.00 0.00 4.04
649 745 3.896648 TTTGTGGTCTCGAAATCTTGC 57.103 42.857 0.00 0.00 0.00 4.01
798 999 1.686355 AGAAAAACGATGTGTGGGCA 58.314 45.000 0.00 0.00 0.00 5.36
847 1048 0.042188 CCGAAACAGGCGCATATTCG 60.042 55.000 25.66 25.66 41.71 3.34
864 1065 2.040544 CGTTTCTGGGCCGCTTCAT 61.041 57.895 0.00 0.00 0.00 2.57
865 1066 1.508088 GTTTCTGGGCCGCTTCATG 59.492 57.895 0.00 0.00 0.00 3.07
881 1082 2.844195 ATGGGCAGGCCACAACAGA 61.844 57.895 20.07 0.00 37.98 3.41
904 1110 1.626321 TGTTTGCGGAAGATAGGTGGA 59.374 47.619 0.00 0.00 0.00 4.02
912 1118 3.318313 GGAAGATAGGTGGAGGGAATCA 58.682 50.000 0.00 0.00 0.00 2.57
937 1143 1.238439 TTCCTTCCTTCTTTGCAGCG 58.762 50.000 0.00 0.00 0.00 5.18
956 1163 3.476419 TCCGGCGGGGGAATTCTC 61.476 66.667 27.98 0.00 36.01 2.87
957 1164 3.792736 CCGGCGGGGGAATTCTCA 61.793 66.667 20.56 0.00 0.00 3.27
991 1198 1.452289 CCGGCGAGGAGAGAGAGAA 60.452 63.158 9.30 0.00 45.00 2.87
1187 1409 1.229359 CCTCTCCCCGTAGCTACCA 59.771 63.158 18.16 0.00 0.00 3.25
1345 1567 1.149101 AAGTTCTTGGAGGGCCTTCA 58.851 50.000 11.54 11.54 34.31 3.02
1351 1573 0.179020 TTGGAGGGCCTTCATATGCG 60.179 55.000 17.16 0.00 34.31 4.73
1352 1574 1.053835 TGGAGGGCCTTCATATGCGA 61.054 55.000 11.54 0.00 34.31 5.10
1353 1575 0.326264 GGAGGGCCTTCATATGCGAT 59.674 55.000 17.76 0.00 0.00 4.58
1355 1577 2.027192 GGAGGGCCTTCATATGCGATTA 60.027 50.000 17.76 0.00 0.00 1.75
1356 1578 3.265791 GAGGGCCTTCATATGCGATTAG 58.734 50.000 7.89 0.00 0.00 1.73
1379 1887 3.241530 TGGTCGCTTGAGCAGGGT 61.242 61.111 3.65 0.00 44.69 4.34
1440 1948 9.933723 TTAACCTTAAACTGGATTACTGAGTAC 57.066 33.333 0.00 0.00 0.00 2.73
1441 1949 7.793948 ACCTTAAACTGGATTACTGAGTACT 57.206 36.000 0.00 0.00 0.00 2.73
1442 1950 7.838884 ACCTTAAACTGGATTACTGAGTACTC 58.161 38.462 16.32 16.32 0.00 2.59
1443 1951 7.093421 ACCTTAAACTGGATTACTGAGTACTCC 60.093 40.741 20.11 18.91 38.04 3.85
1444 1952 5.678955 AAACTGGATTACTGAGTACTCCC 57.321 43.478 21.73 12.74 37.14 4.30
1445 1953 4.611564 ACTGGATTACTGAGTACTCCCT 57.388 45.455 21.73 7.46 37.14 4.20
1446 1954 4.538738 ACTGGATTACTGAGTACTCCCTC 58.461 47.826 21.73 9.04 37.14 4.30
1447 1955 3.892588 CTGGATTACTGAGTACTCCCTCC 59.107 52.174 21.73 16.71 37.14 4.30
1448 1956 2.885894 GGATTACTGAGTACTCCCTCCG 59.114 54.545 20.11 6.13 33.51 4.63
1449 1957 3.553904 GATTACTGAGTACTCCCTCCGT 58.446 50.000 20.11 11.15 34.03 4.69
1450 1958 2.706339 TACTGAGTACTCCCTCCGTC 57.294 55.000 20.11 0.00 32.21 4.79
1451 1959 0.034283 ACTGAGTACTCCCTCCGTCC 60.034 60.000 20.11 0.00 0.00 4.79
1452 1960 0.752376 CTGAGTACTCCCTCCGTCCC 60.752 65.000 20.11 0.00 0.00 4.46
1453 1961 1.305623 GAGTACTCCCTCCGTCCCA 59.694 63.158 12.13 0.00 0.00 4.37
1454 1962 0.324091 GAGTACTCCCTCCGTCCCAA 60.324 60.000 12.13 0.00 0.00 4.12
1455 1963 0.115745 AGTACTCCCTCCGTCCCAAA 59.884 55.000 0.00 0.00 0.00 3.28
1456 1964 0.978907 GTACTCCCTCCGTCCCAAAA 59.021 55.000 0.00 0.00 0.00 2.44
1457 1965 1.558294 GTACTCCCTCCGTCCCAAAAT 59.442 52.381 0.00 0.00 0.00 1.82
1458 1966 1.961133 ACTCCCTCCGTCCCAAAATA 58.039 50.000 0.00 0.00 0.00 1.40
1459 1967 1.838077 ACTCCCTCCGTCCCAAAATAG 59.162 52.381 0.00 0.00 0.00 1.73
1460 1968 2.116238 CTCCCTCCGTCCCAAAATAGA 58.884 52.381 0.00 0.00 0.00 1.98
1461 1969 2.706190 CTCCCTCCGTCCCAAAATAGAT 59.294 50.000 0.00 0.00 0.00 1.98
1462 1970 2.438021 TCCCTCCGTCCCAAAATAGATG 59.562 50.000 0.00 0.00 0.00 2.90
1463 1971 2.438021 CCCTCCGTCCCAAAATAGATGA 59.562 50.000 0.00 0.00 0.00 2.92
1464 1972 3.467803 CCTCCGTCCCAAAATAGATGAC 58.532 50.000 0.00 0.00 0.00 3.06
1465 1973 3.467803 CTCCGTCCCAAAATAGATGACC 58.532 50.000 0.00 0.00 0.00 4.02
1466 1974 2.171870 TCCGTCCCAAAATAGATGACCC 59.828 50.000 0.00 0.00 0.00 4.46
1467 1975 2.092646 CCGTCCCAAAATAGATGACCCA 60.093 50.000 0.00 0.00 0.00 4.51
1468 1976 3.616219 CGTCCCAAAATAGATGACCCAA 58.384 45.455 0.00 0.00 0.00 4.12
1469 1977 3.377172 CGTCCCAAAATAGATGACCCAAC 59.623 47.826 0.00 0.00 0.00 3.77
1470 1978 4.600062 GTCCCAAAATAGATGACCCAACT 58.400 43.478 0.00 0.00 0.00 3.16
1471 1979 5.016831 GTCCCAAAATAGATGACCCAACTT 58.983 41.667 0.00 0.00 0.00 2.66
1472 1980 5.480422 GTCCCAAAATAGATGACCCAACTTT 59.520 40.000 0.00 0.00 0.00 2.66
1473 1981 5.480073 TCCCAAAATAGATGACCCAACTTTG 59.520 40.000 0.00 0.00 0.00 2.77
1474 1982 5.245977 CCCAAAATAGATGACCCAACTTTGT 59.754 40.000 0.00 0.00 0.00 2.83
1475 1983 6.435904 CCCAAAATAGATGACCCAACTTTGTA 59.564 38.462 0.00 0.00 0.00 2.41
1476 1984 7.312899 CCAAAATAGATGACCCAACTTTGTAC 58.687 38.462 0.00 0.00 0.00 2.90
1477 1985 7.176690 CCAAAATAGATGACCCAACTTTGTACT 59.823 37.037 0.00 0.00 0.00 2.73
1478 1986 9.226606 CAAAATAGATGACCCAACTTTGTACTA 57.773 33.333 0.00 0.00 0.00 1.82
1479 1987 9.802039 AAAATAGATGACCCAACTTTGTACTAA 57.198 29.630 0.00 0.00 0.00 2.24
1480 1988 9.802039 AAATAGATGACCCAACTTTGTACTAAA 57.198 29.630 0.00 0.00 0.00 1.85
1481 1989 9.449719 AATAGATGACCCAACTTTGTACTAAAG 57.550 33.333 13.08 13.08 0.00 1.85
1482 1990 6.838382 AGATGACCCAACTTTGTACTAAAGT 58.162 36.000 14.04 14.04 41.82 2.66
1484 1992 8.434392 AGATGACCCAACTTTGTACTAAAGTTA 58.566 33.333 23.56 14.79 45.57 2.24
1485 1993 8.617290 ATGACCCAACTTTGTACTAAAGTTAG 57.383 34.615 23.56 20.79 45.57 2.34
1486 1994 7.567458 TGACCCAACTTTGTACTAAAGTTAGT 58.433 34.615 23.56 22.58 45.57 2.24
1487 1995 8.703743 TGACCCAACTTTGTACTAAAGTTAGTA 58.296 33.333 23.56 6.81 45.57 1.82
1500 2008 7.567458 ACTAAAGTTAGTACAAAACTGGGTCA 58.433 34.615 12.72 0.11 41.92 4.02
1501 2009 8.215736 ACTAAAGTTAGTACAAAACTGGGTCAT 58.784 33.333 12.72 0.00 41.92 3.06
1502 2010 7.506328 AAAGTTAGTACAAAACTGGGTCATC 57.494 36.000 12.72 0.00 39.39 2.92
1503 2011 6.435292 AGTTAGTACAAAACTGGGTCATCT 57.565 37.500 11.56 0.00 39.39 2.90
1504 2012 7.549147 AGTTAGTACAAAACTGGGTCATCTA 57.451 36.000 11.56 0.00 39.39 1.98
1505 2013 8.147244 AGTTAGTACAAAACTGGGTCATCTAT 57.853 34.615 11.56 0.00 39.39 1.98
1506 2014 8.603304 AGTTAGTACAAAACTGGGTCATCTATT 58.397 33.333 11.56 0.00 39.39 1.73
1507 2015 9.227777 GTTAGTACAAAACTGGGTCATCTATTT 57.772 33.333 0.00 0.00 39.39 1.40
1508 2016 9.802039 TTAGTACAAAACTGGGTCATCTATTTT 57.198 29.630 0.00 0.00 39.39 1.82
1509 2017 8.110860 AGTACAAAACTGGGTCATCTATTTTG 57.889 34.615 0.00 5.87 40.92 2.44
1510 2018 7.942341 AGTACAAAACTGGGTCATCTATTTTGA 59.058 33.333 12.71 0.00 38.64 2.69
1511 2019 7.595819 ACAAAACTGGGTCATCTATTTTGAA 57.404 32.000 12.71 0.00 38.64 2.69
1512 2020 8.017418 ACAAAACTGGGTCATCTATTTTGAAA 57.983 30.769 12.71 0.00 38.64 2.69
1513 2021 7.926018 ACAAAACTGGGTCATCTATTTTGAAAC 59.074 33.333 12.71 0.00 38.64 2.78
1514 2022 5.880054 ACTGGGTCATCTATTTTGAAACG 57.120 39.130 0.00 0.00 0.00 3.60
1515 2023 4.700213 ACTGGGTCATCTATTTTGAAACGG 59.300 41.667 0.00 0.00 0.00 4.44
1516 2024 4.912586 TGGGTCATCTATTTTGAAACGGA 58.087 39.130 0.00 0.00 0.00 4.69
1517 2025 4.941263 TGGGTCATCTATTTTGAAACGGAG 59.059 41.667 0.00 0.00 0.00 4.63
1518 2026 4.335594 GGGTCATCTATTTTGAAACGGAGG 59.664 45.833 0.00 0.00 0.00 4.30
1519 2027 4.335594 GGTCATCTATTTTGAAACGGAGGG 59.664 45.833 0.00 0.00 0.00 4.30
1520 2028 5.183228 GTCATCTATTTTGAAACGGAGGGA 58.817 41.667 0.00 0.00 0.00 4.20
1521 2029 5.294552 GTCATCTATTTTGAAACGGAGGGAG 59.705 44.000 0.00 0.00 0.00 4.30
1608 2119 3.991121 TGACGCGACATGAACAAAATAGA 59.009 39.130 15.93 0.00 0.00 1.98
1643 2154 2.787473 TGCTTGGACATTCCTAGGTG 57.213 50.000 9.08 2.94 39.34 4.00
1660 2171 1.414550 GGTGATCCTGCCTAACTCCTC 59.585 57.143 0.00 0.00 0.00 3.71
1664 2175 0.039180 TCCTGCCTAACTCCTCGTGA 59.961 55.000 0.00 0.00 0.00 4.35
1667 2178 1.546476 CTGCCTAACTCCTCGTGACTT 59.454 52.381 0.00 0.00 0.00 3.01
1685 2196 4.338118 TGACTTCCACCTCATTTGTTTGAC 59.662 41.667 0.00 0.00 0.00 3.18
1751 2262 7.504924 TTTCATTCACGTCCTTTTCTGTATT 57.495 32.000 0.00 0.00 0.00 1.89
1858 2369 4.389890 GGACATATCCAAATTTGCAGCA 57.610 40.909 12.92 0.00 45.47 4.41
1979 2490 3.448301 TCACATGAAAATGGATTCAGGGC 59.552 43.478 0.00 0.00 43.42 5.19
2022 2533 9.394767 TCTGTTAATTTCTTTGCTATGATGCTA 57.605 29.630 0.00 0.00 0.00 3.49
2191 2704 5.723672 TGCCTGGTTAGCTGATATACTAC 57.276 43.478 0.00 0.00 0.00 2.73
2223 2736 0.030638 GGCACGCTGTGTTCATGTTT 59.969 50.000 9.76 0.00 35.75 2.83
2317 2830 9.321562 CAACCGAGTTTATATTAACCACTACAT 57.678 33.333 1.07 0.00 0.00 2.29
2353 2870 8.194769 ACAAAAGATTAAAACGTCTCATTTGGT 58.805 29.630 0.00 0.00 31.34 3.67
2427 2944 6.398234 TTTGTGTAAATGTATGTGTGGCTT 57.602 33.333 0.00 0.00 0.00 4.35
2430 2947 4.390603 GTGTAAATGTATGTGTGGCTTCGA 59.609 41.667 0.00 0.00 0.00 3.71
2509 3036 9.440773 GGATATCATGCTAGTTACATTTGATGA 57.559 33.333 4.83 0.00 0.00 2.92
2534 3061 9.403110 GACATAATCTAGCTGCAAAATAAATGG 57.597 33.333 1.02 0.00 0.00 3.16
2632 3168 0.478072 TGTTGAGGTGAGTGGGCAAT 59.522 50.000 0.00 0.00 0.00 3.56
2733 3269 8.584157 ACATAATTCTTGTGCTTTCATGGTAAA 58.416 29.630 0.00 0.00 0.00 2.01
2813 3349 9.981114 ATGTTAATCAGTTCAAACTAAAAAGGG 57.019 29.630 0.00 0.00 37.08 3.95
2839 3375 7.330700 GGAACTGATTATAGTTAGCTGCAGATC 59.669 40.741 20.43 8.57 40.78 2.75
2959 3503 4.155462 CCTTTCATGATTGGGCTGATATCG 59.845 45.833 0.00 0.00 0.00 2.92
3039 3583 6.951643 ACAAAAGAAAGCTGAATGAAAATGC 58.048 32.000 0.00 0.00 0.00 3.56
3241 3789 2.025321 GGGTCCAACTACCAACATGGAT 60.025 50.000 2.85 0.00 43.41 3.41
3259 3807 3.181486 TGGATACTTGTCAGATGTCTCGC 60.181 47.826 0.00 0.00 37.61 5.03
3335 3884 4.423625 AGTTCTGTTGAAGGTTGTAGCT 57.576 40.909 0.00 0.00 32.15 3.32
3357 3906 2.431057 GTGGGTACGAGATGTCAATCCT 59.569 50.000 0.00 0.00 32.77 3.24
3404 3953 3.671928 CGACACGAAACGATTTCCTTAGT 59.328 43.478 0.00 0.00 36.30 2.24
3434 3986 0.682209 CCAAGACCAATGCTCAGGGG 60.682 60.000 0.00 0.00 0.00 4.79
3531 4097 3.391506 TGTTCCATATGAGAGATGGCG 57.608 47.619 3.65 0.00 43.17 5.69
3593 4160 5.633182 CCTTGTAAAAATGATCACCAAACCG 59.367 40.000 0.00 0.00 0.00 4.44
3669 4236 9.044150 TGAAAAGGACTGCAAATTTTGATTAAG 57.956 29.630 13.26 6.66 0.00 1.85
3682 4249 2.156098 TGATTAAGGTCAAACGGTGGC 58.844 47.619 0.00 0.00 0.00 5.01
3698 4265 2.481276 GGTGGCAAGTTTGACCAAGTTC 60.481 50.000 8.79 0.19 36.57 3.01
3831 5535 5.164954 TGTAAACTTGGTCAAACTTTGCAC 58.835 37.500 0.00 0.00 0.00 4.57
3847 5551 1.579429 CACCGTTTGCTTGTAGGCC 59.421 57.895 0.00 0.00 0.00 5.19
3848 5552 0.889186 CACCGTTTGCTTGTAGGCCT 60.889 55.000 11.78 11.78 0.00 5.19
3849 5553 0.179001 ACCGTTTGCTTGTAGGCCTT 60.179 50.000 12.58 0.00 0.00 4.35
3850 5554 0.521735 CCGTTTGCTTGTAGGCCTTC 59.478 55.000 12.58 6.47 0.00 3.46
3851 5555 1.523758 CGTTTGCTTGTAGGCCTTCT 58.476 50.000 12.58 0.00 0.00 2.85
3863 5580 5.253330 TGTAGGCCTTCTTTTCAAGTATGG 58.747 41.667 12.58 0.00 0.00 2.74
3874 5591 7.175104 TCTTTTCAAGTATGGAGGCAGTATTT 58.825 34.615 0.00 0.00 0.00 1.40
3942 6229 6.759497 AAACTAGTCTTATTTGGTCCATGC 57.241 37.500 0.00 0.00 0.00 4.06
3944 6231 5.186198 ACTAGTCTTATTTGGTCCATGCAC 58.814 41.667 0.00 0.00 0.00 4.57
3945 6232 4.307032 AGTCTTATTTGGTCCATGCACT 57.693 40.909 0.00 0.00 0.00 4.40
3946 6233 4.666512 AGTCTTATTTGGTCCATGCACTT 58.333 39.130 0.00 0.00 0.00 3.16
3947 6234 4.460382 AGTCTTATTTGGTCCATGCACTTG 59.540 41.667 0.00 0.00 0.00 3.16
3948 6235 3.763360 TCTTATTTGGTCCATGCACTTGG 59.237 43.478 0.00 0.00 38.18 3.61
3949 6236 2.014010 ATTTGGTCCATGCACTTGGT 57.986 45.000 6.24 0.00 38.01 3.67
3950 6237 1.327303 TTTGGTCCATGCACTTGGTC 58.673 50.000 6.24 0.89 38.01 4.02
3951 6238 0.539438 TTGGTCCATGCACTTGGTCC 60.539 55.000 13.80 13.80 43.04 4.46
3952 6239 1.074775 GGTCCATGCACTTGGTCCA 59.925 57.895 15.28 0.00 42.50 4.02
3953 6240 0.323725 GGTCCATGCACTTGGTCCAT 60.324 55.000 15.28 0.00 42.50 3.41
3954 6241 0.813184 GTCCATGCACTTGGTCCATG 59.187 55.000 6.24 3.21 38.01 3.66
3955 6242 2.195389 CCATGCACTTGGTCCATGG 58.805 57.895 4.97 4.97 46.89 3.66
3956 6243 3.269578 CATGCACTTGGTCCATGGA 57.730 52.632 11.44 11.44 34.26 3.41
3957 6244 1.100510 CATGCACTTGGTCCATGGAG 58.899 55.000 16.81 5.86 34.26 3.86
3958 6245 0.033796 ATGCACTTGGTCCATGGAGG 60.034 55.000 16.81 8.47 39.47 4.30
3959 6246 1.133181 TGCACTTGGTCCATGGAGGA 61.133 55.000 16.81 0.77 46.75 3.71
3966 6253 2.877384 TCCATGGAGGAGGTGGGT 59.123 61.111 11.44 0.00 43.07 4.51
3967 6254 1.616327 TCCATGGAGGAGGTGGGTG 60.616 63.158 11.44 0.00 43.07 4.61
3968 6255 1.616327 CCATGGAGGAGGTGGGTGA 60.616 63.158 5.56 0.00 41.22 4.02
3969 6256 1.604378 CATGGAGGAGGTGGGTGAC 59.396 63.158 0.00 0.00 0.00 3.67
3983 6270 2.990066 GGTGACCTTAGTCCATGAGG 57.010 55.000 0.00 0.00 42.81 3.86
3984 6271 1.486726 GGTGACCTTAGTCCATGAGGG 59.513 57.143 0.00 0.00 42.81 4.30
3985 6272 2.467880 GTGACCTTAGTCCATGAGGGA 58.532 52.381 0.00 0.00 45.89 4.20
3994 6281 1.533711 CCATGAGGGATGGTGGTCC 59.466 63.158 0.00 0.00 46.20 4.46
3995 6282 1.281199 CCATGAGGGATGGTGGTCCA 61.281 60.000 0.00 0.00 46.20 4.02
4008 6608 1.478105 GTGGTCCATTGGGCTTGATTC 59.522 52.381 7.34 0.00 0.00 2.52
4119 6719 1.133790 GCTCATCTGTGATGGTTTGCC 59.866 52.381 7.58 0.00 32.98 4.52
4141 6741 5.105310 GCCTTCTGTATCACAGGTTCTTCTA 60.105 44.000 6.48 0.00 45.94 2.10
4151 6751 7.016153 TCACAGGTTCTTCTATACACCATTT 57.984 36.000 0.00 0.00 0.00 2.32
4164 6764 9.696572 TCTATACACCATTTCTAGACAAGTACT 57.303 33.333 0.00 0.00 0.00 2.73
4217 6817 1.609783 GCAGGCAGTATTCAGGGGT 59.390 57.895 0.00 0.00 0.00 4.95
4313 6913 4.437239 AGGATGTCTAATCACAAGAAGCG 58.563 43.478 0.00 0.00 0.00 4.68
4389 6989 4.165565 CCCATCCTCTGCATACATATCCAT 59.834 45.833 0.00 0.00 0.00 3.41
4414 7014 6.113411 GCAGCCAGACCTAAAGAATAAACTA 58.887 40.000 0.00 0.00 0.00 2.24
4462 7072 1.941999 GAGCCAGCTTGGTGCATTCC 61.942 60.000 0.00 0.00 45.94 3.01
4505 7119 4.157105 TCTGCAACATGAATGATCACAAGG 59.843 41.667 0.00 0.00 38.69 3.61
4510 7124 3.635373 ACATGAATGATCACAAGGGATGC 59.365 43.478 0.00 0.00 38.69 3.91
4610 7224 8.201554 TGCATCAACTATGTTTCTCTATGTTC 57.798 34.615 0.00 0.00 37.93 3.18
4660 7368 4.591498 TGTTTTGCCCTCTCTAGTCTGTAA 59.409 41.667 0.00 0.00 0.00 2.41
4687 7395 9.131791 AGTTCTGTATTTCACAAACTAAATGGT 57.868 29.630 0.00 0.00 37.04 3.55
4688 7396 9.394477 GTTCTGTATTTCACAAACTAAATGGTC 57.606 33.333 0.00 0.00 36.48 4.02
4702 7410 0.328258 ATGGTCAACTAGGTGCACCC 59.672 55.000 32.29 14.68 36.42 4.61
4791 7523 2.551459 GCATGGCATTCTACATCTGGAC 59.449 50.000 0.00 0.00 0.00 4.02
4807 7540 4.523083 TCTGGACGATATTGGGGAAAAAG 58.477 43.478 0.00 0.00 0.00 2.27
4814 7547 4.499696 CGATATTGGGGAAAAAGGACATGC 60.500 45.833 0.00 0.00 0.00 4.06
4830 7563 4.321230 GGACATGCCTTTTTGTTGGACTAG 60.321 45.833 0.00 0.00 0.00 2.57
4903 7646 2.838813 AGCCTAGTTTCCAAGGGTACTC 59.161 50.000 0.00 0.00 41.72 2.59
4911 7654 2.972348 TCCAAGGGTACTCAACTCACT 58.028 47.619 0.00 0.00 0.00 3.41
4918 7661 3.003480 GGTACTCAACTCACTCCAATGC 58.997 50.000 0.00 0.00 0.00 3.56
4924 7667 5.769662 ACTCAACTCACTCCAATGCAAATAA 59.230 36.000 0.00 0.00 0.00 1.40
4989 7732 0.543749 CTCTACCCCTTCCCTGCAAG 59.456 60.000 0.00 0.00 0.00 4.01
5003 7746 4.225942 TCCCTGCAAGTCAATCAATCTAGT 59.774 41.667 0.00 0.00 0.00 2.57
5004 7747 5.425217 TCCCTGCAAGTCAATCAATCTAGTA 59.575 40.000 0.00 0.00 0.00 1.82
5006 7749 6.599244 CCCTGCAAGTCAATCAATCTAGTAAA 59.401 38.462 0.00 0.00 0.00 2.01
5007 7750 7.201679 CCCTGCAAGTCAATCAATCTAGTAAAG 60.202 40.741 0.00 0.00 0.00 1.85
5008 7751 7.076842 TGCAAGTCAATCAATCTAGTAAAGC 57.923 36.000 0.00 0.00 0.00 3.51
5021 7765 5.467705 TCTAGTAAAGCTCAAACCTCGAAC 58.532 41.667 0.00 0.00 0.00 3.95
5063 7807 5.183530 TGTCAACCATGAGGAAATGAGAT 57.816 39.130 0.00 0.00 35.88 2.75
5082 7826 1.267121 TCCTCTGTCTACCACCTTGC 58.733 55.000 0.00 0.00 0.00 4.01
5111 7855 3.562176 CCTTCCTCACCCTGCTAAAATGT 60.562 47.826 0.00 0.00 0.00 2.71
5126 7870 2.779755 AATGTTCACACGGGCTGATA 57.220 45.000 0.00 0.00 0.00 2.15
5150 7894 0.908198 ATGTGAGTCTGGCCTTCTCC 59.092 55.000 3.32 4.52 0.00 3.71
5288 8032 4.988716 TCCACCTCGACCACGGCT 62.989 66.667 0.00 0.00 40.21 5.52
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.328382 TTCCTACTTCCAACCATCACG 57.672 47.619 0.00 0.00 0.00 4.35
1 2 5.300792 TGTTTTTCCTACTTCCAACCATCAC 59.699 40.000 0.00 0.00 0.00 3.06
2 3 5.450453 TGTTTTTCCTACTTCCAACCATCA 58.550 37.500 0.00 0.00 0.00 3.07
3 4 6.434340 AGATGTTTTTCCTACTTCCAACCATC 59.566 38.462 0.00 0.00 0.00 3.51
4 5 6.314917 AGATGTTTTTCCTACTTCCAACCAT 58.685 36.000 0.00 0.00 0.00 3.55
5 6 5.701224 AGATGTTTTTCCTACTTCCAACCA 58.299 37.500 0.00 0.00 0.00 3.67
6 7 5.106673 CGAGATGTTTTTCCTACTTCCAACC 60.107 44.000 0.00 0.00 0.00 3.77
7 8 5.469084 ACGAGATGTTTTTCCTACTTCCAAC 59.531 40.000 0.00 0.00 0.00 3.77
8 9 5.617252 ACGAGATGTTTTTCCTACTTCCAA 58.383 37.500 0.00 0.00 0.00 3.53
9 10 5.223449 ACGAGATGTTTTTCCTACTTCCA 57.777 39.130 0.00 0.00 0.00 3.53
10 11 7.548075 TGATTACGAGATGTTTTTCCTACTTCC 59.452 37.037 0.00 0.00 0.00 3.46
11 12 8.475331 TGATTACGAGATGTTTTTCCTACTTC 57.525 34.615 0.00 0.00 0.00 3.01
16 17 9.838339 AAGATATGATTACGAGATGTTTTTCCT 57.162 29.630 0.00 0.00 0.00 3.36
17 18 9.869844 CAAGATATGATTACGAGATGTTTTTCC 57.130 33.333 0.00 0.00 0.00 3.13
20 21 9.599866 TGACAAGATATGATTACGAGATGTTTT 57.400 29.630 0.00 0.00 0.00 2.43
21 22 9.035607 GTGACAAGATATGATTACGAGATGTTT 57.964 33.333 0.00 0.00 0.00 2.83
22 23 8.197439 TGTGACAAGATATGATTACGAGATGTT 58.803 33.333 0.00 0.00 0.00 2.71
23 24 7.716612 TGTGACAAGATATGATTACGAGATGT 58.283 34.615 0.00 0.00 0.00 3.06
24 25 8.645487 CATGTGACAAGATATGATTACGAGATG 58.355 37.037 0.00 0.00 0.00 2.90
25 26 8.579863 TCATGTGACAAGATATGATTACGAGAT 58.420 33.333 0.00 0.00 0.00 2.75
26 27 7.940850 TCATGTGACAAGATATGATTACGAGA 58.059 34.615 0.00 0.00 0.00 4.04
27 28 8.078596 TCTCATGTGACAAGATATGATTACGAG 58.921 37.037 0.00 0.00 0.00 4.18
28 29 7.940850 TCTCATGTGACAAGATATGATTACGA 58.059 34.615 0.00 0.00 0.00 3.43
29 30 8.754230 ATCTCATGTGACAAGATATGATTACG 57.246 34.615 0.00 0.00 0.00 3.18
30 31 9.149225 GGATCTCATGTGACAAGATATGATTAC 57.851 37.037 0.00 0.00 30.04 1.89
31 32 8.316946 GGGATCTCATGTGACAAGATATGATTA 58.683 37.037 0.00 0.00 30.04 1.75
32 33 7.166851 GGGATCTCATGTGACAAGATATGATT 58.833 38.462 0.00 0.00 30.04 2.57
33 34 6.271624 TGGGATCTCATGTGACAAGATATGAT 59.728 38.462 0.00 0.00 30.04 2.45
34 35 5.603813 TGGGATCTCATGTGACAAGATATGA 59.396 40.000 0.00 0.00 30.04 2.15
35 36 5.861727 TGGGATCTCATGTGACAAGATATG 58.138 41.667 0.00 0.00 30.04 1.78
36 37 5.012871 CCTGGGATCTCATGTGACAAGATAT 59.987 44.000 0.00 0.00 30.04 1.63
37 38 4.346127 CCTGGGATCTCATGTGACAAGATA 59.654 45.833 0.00 0.00 30.04 1.98
38 39 3.136077 CCTGGGATCTCATGTGACAAGAT 59.864 47.826 0.00 0.00 32.53 2.40
39 40 2.502947 CCTGGGATCTCATGTGACAAGA 59.497 50.000 0.00 0.00 0.00 3.02
40 41 2.238144 ACCTGGGATCTCATGTGACAAG 59.762 50.000 2.31 0.00 0.00 3.16
41 42 2.269023 ACCTGGGATCTCATGTGACAA 58.731 47.619 2.31 0.00 0.00 3.18
42 43 1.956869 ACCTGGGATCTCATGTGACA 58.043 50.000 2.31 0.00 0.00 3.58
43 44 2.420687 GGAACCTGGGATCTCATGTGAC 60.421 54.545 4.09 2.67 0.00 3.67
44 45 1.839994 GGAACCTGGGATCTCATGTGA 59.160 52.381 4.09 0.00 0.00 3.58
45 46 2.338577 GGAACCTGGGATCTCATGTG 57.661 55.000 4.09 0.00 0.00 3.21
60 61 0.178961 AGCCAGGTTTGAAGGGGAAC 60.179 55.000 0.00 0.00 0.00 3.62
61 62 0.560688 AAGCCAGGTTTGAAGGGGAA 59.439 50.000 0.00 0.00 0.00 3.97
62 63 0.112412 GAAGCCAGGTTTGAAGGGGA 59.888 55.000 0.00 0.00 0.00 4.81
63 64 0.178964 TGAAGCCAGGTTTGAAGGGG 60.179 55.000 0.00 0.00 0.00 4.79
64 65 1.928868 ATGAAGCCAGGTTTGAAGGG 58.071 50.000 0.00 0.00 0.00 3.95
65 66 3.690460 ACTATGAAGCCAGGTTTGAAGG 58.310 45.455 0.00 0.00 0.00 3.46
66 67 4.333926 GCTACTATGAAGCCAGGTTTGAAG 59.666 45.833 0.00 0.00 33.73 3.02
67 68 4.261801 GCTACTATGAAGCCAGGTTTGAA 58.738 43.478 0.00 0.00 33.73 2.69
68 69 3.873910 GCTACTATGAAGCCAGGTTTGA 58.126 45.455 0.00 0.00 33.73 2.69
77 78 5.207110 TCTTCTCATGGCTACTATGAAGC 57.793 43.478 0.00 0.00 39.33 3.86
78 79 9.770097 TTATTTCTTCTCATGGCTACTATGAAG 57.230 33.333 0.00 0.00 34.41 3.02
79 80 9.547753 GTTATTTCTTCTCATGGCTACTATGAA 57.452 33.333 0.00 0.00 34.41 2.57
80 81 8.928448 AGTTATTTCTTCTCATGGCTACTATGA 58.072 33.333 0.00 0.00 33.76 2.15
81 82 9.202273 GAGTTATTTCTTCTCATGGCTACTATG 57.798 37.037 0.00 0.00 0.00 2.23
82 83 9.153479 AGAGTTATTTCTTCTCATGGCTACTAT 57.847 33.333 0.00 0.00 0.00 2.12
83 84 8.417106 CAGAGTTATTTCTTCTCATGGCTACTA 58.583 37.037 0.00 0.00 0.00 1.82
84 85 7.093112 ACAGAGTTATTTCTTCTCATGGCTACT 60.093 37.037 0.00 0.00 0.00 2.57
85 86 7.044798 ACAGAGTTATTTCTTCTCATGGCTAC 58.955 38.462 0.00 0.00 0.00 3.58
86 87 7.093333 TGACAGAGTTATTTCTTCTCATGGCTA 60.093 37.037 0.00 0.00 0.00 3.93
87 88 6.059787 ACAGAGTTATTTCTTCTCATGGCT 57.940 37.500 0.00 0.00 0.00 4.75
88 89 5.877012 TGACAGAGTTATTTCTTCTCATGGC 59.123 40.000 0.00 0.00 0.00 4.40
89 90 6.538021 CCTGACAGAGTTATTTCTTCTCATGG 59.462 42.308 3.32 0.00 0.00 3.66
90 91 7.102346 ACCTGACAGAGTTATTTCTTCTCATG 58.898 38.462 3.32 0.00 0.00 3.07
91 92 7.038729 TGACCTGACAGAGTTATTTCTTCTCAT 60.039 37.037 3.32 0.00 0.00 2.90
92 93 6.267699 TGACCTGACAGAGTTATTTCTTCTCA 59.732 38.462 3.32 0.00 0.00 3.27
93 94 6.692486 TGACCTGACAGAGTTATTTCTTCTC 58.308 40.000 3.32 0.00 0.00 2.87
94 95 6.672266 TGACCTGACAGAGTTATTTCTTCT 57.328 37.500 3.32 0.00 0.00 2.85
95 96 9.606631 AATATGACCTGACAGAGTTATTTCTTC 57.393 33.333 3.32 0.00 0.00 2.87
96 97 9.965902 AAATATGACCTGACAGAGTTATTTCTT 57.034 29.630 3.32 0.00 0.00 2.52
97 98 9.388506 CAAATATGACCTGACAGAGTTATTTCT 57.611 33.333 3.32 0.00 0.00 2.52
98 99 8.616076 CCAAATATGACCTGACAGAGTTATTTC 58.384 37.037 3.32 0.00 0.00 2.17
99 100 8.109634 ACCAAATATGACCTGACAGAGTTATTT 58.890 33.333 3.32 6.12 0.00 1.40
100 101 7.633789 ACCAAATATGACCTGACAGAGTTATT 58.366 34.615 3.32 0.72 0.00 1.40
101 102 7.200434 ACCAAATATGACCTGACAGAGTTAT 57.800 36.000 3.32 5.46 0.00 1.89
102 103 6.620877 ACCAAATATGACCTGACAGAGTTA 57.379 37.500 3.32 0.00 0.00 2.24
103 104 5.505181 ACCAAATATGACCTGACAGAGTT 57.495 39.130 3.32 0.00 0.00 3.01
104 105 5.129485 CCTACCAAATATGACCTGACAGAGT 59.871 44.000 3.32 0.00 0.00 3.24
105 106 5.363868 TCCTACCAAATATGACCTGACAGAG 59.636 44.000 3.32 0.00 0.00 3.35
106 107 5.277250 TCCTACCAAATATGACCTGACAGA 58.723 41.667 3.32 0.00 0.00 3.41
107 108 5.614324 TCCTACCAAATATGACCTGACAG 57.386 43.478 0.00 0.00 0.00 3.51
108 109 6.575244 AATCCTACCAAATATGACCTGACA 57.425 37.500 0.00 0.00 0.00 3.58
109 110 5.696724 CGAATCCTACCAAATATGACCTGAC 59.303 44.000 0.00 0.00 0.00 3.51
110 111 5.221641 CCGAATCCTACCAAATATGACCTGA 60.222 44.000 0.00 0.00 0.00 3.86
111 112 4.997395 CCGAATCCTACCAAATATGACCTG 59.003 45.833 0.00 0.00 0.00 4.00
112 113 4.505039 GCCGAATCCTACCAAATATGACCT 60.505 45.833 0.00 0.00 0.00 3.85
113 114 3.751698 GCCGAATCCTACCAAATATGACC 59.248 47.826 0.00 0.00 0.00 4.02
114 115 4.452455 CAGCCGAATCCTACCAAATATGAC 59.548 45.833 0.00 0.00 0.00 3.06
115 116 4.641396 CAGCCGAATCCTACCAAATATGA 58.359 43.478 0.00 0.00 0.00 2.15
116 117 3.189287 GCAGCCGAATCCTACCAAATATG 59.811 47.826 0.00 0.00 0.00 1.78
117 118 3.181445 TGCAGCCGAATCCTACCAAATAT 60.181 43.478 0.00 0.00 0.00 1.28
118 119 2.171659 TGCAGCCGAATCCTACCAAATA 59.828 45.455 0.00 0.00 0.00 1.40
119 120 1.064758 TGCAGCCGAATCCTACCAAAT 60.065 47.619 0.00 0.00 0.00 2.32
120 121 0.326595 TGCAGCCGAATCCTACCAAA 59.673 50.000 0.00 0.00 0.00 3.28
121 122 0.326595 TTGCAGCCGAATCCTACCAA 59.673 50.000 0.00 0.00 0.00 3.67
122 123 0.546122 ATTGCAGCCGAATCCTACCA 59.454 50.000 0.00 0.00 0.00 3.25
123 124 1.604278 GAATTGCAGCCGAATCCTACC 59.396 52.381 0.00 0.00 0.00 3.18
124 125 2.289002 CAGAATTGCAGCCGAATCCTAC 59.711 50.000 0.00 0.00 0.00 3.18
125 126 2.564771 CAGAATTGCAGCCGAATCCTA 58.435 47.619 0.00 0.00 0.00 2.94
126 127 1.386533 CAGAATTGCAGCCGAATCCT 58.613 50.000 0.00 0.00 0.00 3.24
127 128 0.383231 CCAGAATTGCAGCCGAATCC 59.617 55.000 0.00 0.00 0.00 3.01
128 129 0.383231 CCCAGAATTGCAGCCGAATC 59.617 55.000 0.00 0.00 0.00 2.52
129 130 1.669999 GCCCAGAATTGCAGCCGAAT 61.670 55.000 0.00 0.00 0.00 3.34
130 131 2.342650 GCCCAGAATTGCAGCCGAA 61.343 57.895 0.00 0.00 0.00 4.30
131 132 2.751436 GCCCAGAATTGCAGCCGA 60.751 61.111 0.00 0.00 0.00 5.54
132 133 2.345880 GATGCCCAGAATTGCAGCCG 62.346 60.000 0.00 0.00 41.46 5.52
133 134 1.440476 GATGCCCAGAATTGCAGCC 59.560 57.895 0.00 0.00 41.46 4.85
134 135 1.041447 AGGATGCCCAGAATTGCAGC 61.041 55.000 0.00 0.00 42.86 5.25
135 136 1.136305 CAAGGATGCCCAGAATTGCAG 59.864 52.381 0.00 0.00 41.46 4.41
136 137 1.187974 CAAGGATGCCCAGAATTGCA 58.812 50.000 0.00 0.00 42.52 4.08
150 151 0.768622 CCCACACCCTAACACAAGGA 59.231 55.000 0.00 0.00 39.15 3.36
151 152 0.768622 TCCCACACCCTAACACAAGG 59.231 55.000 0.00 0.00 36.30 3.61
155 156 2.351706 TGTTTCCCACACCCTAACAC 57.648 50.000 0.00 0.00 0.00 3.32
161 162 2.316108 AGTGATTTGTTTCCCACACCC 58.684 47.619 0.00 0.00 33.98 4.61
181 182 5.598830 GGAGAATCAACAGTCCACTATCCTA 59.401 44.000 0.00 0.00 36.25 2.94
186 187 4.223032 GGAAGGAGAATCAACAGTCCACTA 59.777 45.833 0.00 0.00 36.25 2.74
188 189 3.244561 TGGAAGGAGAATCAACAGTCCAC 60.245 47.826 0.00 0.00 36.25 4.02
218 231 2.993899 CCACATACTCGTTGGTGAAGAC 59.006 50.000 0.00 0.00 33.16 3.01
219 232 2.894765 TCCACATACTCGTTGGTGAAGA 59.105 45.455 0.00 0.00 33.16 2.87
226 239 1.593006 GGCGAATCCACATACTCGTTG 59.407 52.381 0.00 0.00 33.87 4.10
227 240 1.480954 AGGCGAATCCACATACTCGTT 59.519 47.619 0.00 0.00 37.29 3.85
228 241 1.067212 GAGGCGAATCCACATACTCGT 59.933 52.381 0.00 0.00 37.29 4.18
234 247 1.281925 AAGGGGAGGCGAATCCACAT 61.282 55.000 10.80 0.00 46.03 3.21
236 249 1.032114 CAAAGGGGAGGCGAATCCAC 61.032 60.000 8.41 4.71 43.73 4.02
237 250 1.302949 CAAAGGGGAGGCGAATCCA 59.697 57.895 8.41 0.00 41.52 3.41
238 251 2.121538 GCAAAGGGGAGGCGAATCC 61.122 63.158 0.00 0.00 38.76 3.01
239 252 2.121538 GGCAAAGGGGAGGCGAATC 61.122 63.158 0.00 0.00 0.00 2.52
240 253 2.043953 GGCAAAGGGGAGGCGAAT 60.044 61.111 0.00 0.00 0.00 3.34
267 294 2.606519 TCCCTGCTACCAGCCGTT 60.607 61.111 0.00 0.00 41.51 4.44
268 295 3.077556 CTCCCTGCTACCAGCCGT 61.078 66.667 0.00 0.00 41.51 5.68
280 307 0.779997 ACACCAAAATGCTCCTCCCT 59.220 50.000 0.00 0.00 0.00 4.20
283 310 2.087646 GGAGACACCAAAATGCTCCTC 58.912 52.381 0.00 0.00 38.66 3.71
285 312 1.909700 TGGAGACACCAAAATGCTCC 58.090 50.000 0.00 0.00 46.75 4.70
299 326 7.008941 ACCTAAACTACTAACAAGAGTGGAGA 58.991 38.462 0.00 0.00 32.56 3.71
300 327 7.039923 TGACCTAAACTACTAACAAGAGTGGAG 60.040 40.741 0.00 0.00 32.56 3.86
304 331 7.836479 ACTGACCTAAACTACTAACAAGAGT 57.164 36.000 0.00 0.00 0.00 3.24
338 368 2.879462 CGTTGCGCCTACGAGGAC 60.879 66.667 22.80 1.24 43.93 3.85
358 388 1.739067 AAAAGTGCCGCTATCTGTCC 58.261 50.000 0.00 0.00 0.00 4.02
359 389 3.003480 AGAAAAAGTGCCGCTATCTGTC 58.997 45.455 0.00 0.00 0.00 3.51
360 390 3.059352 AGAAAAAGTGCCGCTATCTGT 57.941 42.857 0.00 0.00 0.00 3.41
361 391 3.436704 TGAAGAAAAAGTGCCGCTATCTG 59.563 43.478 0.00 0.00 0.00 2.90
362 392 3.674997 TGAAGAAAAAGTGCCGCTATCT 58.325 40.909 0.00 0.00 0.00 1.98
364 394 3.821033 ACTTGAAGAAAAAGTGCCGCTAT 59.179 39.130 0.00 0.00 36.52 2.97
365 395 3.211045 ACTTGAAGAAAAAGTGCCGCTA 58.789 40.909 0.00 0.00 36.52 4.26
366 396 2.024414 ACTTGAAGAAAAAGTGCCGCT 58.976 42.857 0.00 0.00 36.52 5.52
367 397 2.492019 ACTTGAAGAAAAAGTGCCGC 57.508 45.000 0.00 0.00 36.52 6.53
368 398 4.173256 ACAAACTTGAAGAAAAAGTGCCG 58.827 39.130 0.00 0.00 37.90 5.69
369 399 5.410924 AGACAAACTTGAAGAAAAAGTGCC 58.589 37.500 0.00 0.00 37.90 5.01
371 401 8.223100 CCAAAAGACAAACTTGAAGAAAAAGTG 58.777 33.333 0.00 0.00 37.90 3.16
372 402 7.387673 CCCAAAAGACAAACTTGAAGAAAAAGT 59.612 33.333 0.00 0.00 39.55 2.66
373 403 7.148423 CCCCAAAAGACAAACTTGAAGAAAAAG 60.148 37.037 0.00 0.00 38.98 2.27
374 404 6.652900 CCCCAAAAGACAAACTTGAAGAAAAA 59.347 34.615 0.00 0.00 38.98 1.94
375 405 6.169800 CCCCAAAAGACAAACTTGAAGAAAA 58.830 36.000 0.00 0.00 38.98 2.29
395 425 2.199117 CGAGGAAGATCGAACCCCA 58.801 57.895 0.00 0.00 45.56 4.96
406 436 0.882474 AACAGACGGACTCGAGGAAG 59.118 55.000 18.41 9.44 40.11 3.46
407 437 1.000607 CAAACAGACGGACTCGAGGAA 60.001 52.381 18.41 0.00 40.11 3.36
411 441 1.111116 ACCCAAACAGACGGACTCGA 61.111 55.000 0.00 0.00 40.11 4.04
417 447 0.310854 GCTGAAACCCAAACAGACGG 59.689 55.000 0.00 0.00 34.07 4.79
422 452 1.305201 GAGACGCTGAAACCCAAACA 58.695 50.000 0.00 0.00 0.00 2.83
424 454 0.472471 AGGAGACGCTGAAACCCAAA 59.528 50.000 0.00 0.00 0.00 3.28
425 455 0.472471 AAGGAGACGCTGAAACCCAA 59.528 50.000 0.00 0.00 0.00 4.12
429 459 0.944386 TGCAAAGGAGACGCTGAAAC 59.056 50.000 0.00 0.00 0.00 2.78
430 460 0.944386 GTGCAAAGGAGACGCTGAAA 59.056 50.000 0.00 0.00 0.00 2.69
431 461 1.221466 CGTGCAAAGGAGACGCTGAA 61.221 55.000 0.00 0.00 0.00 3.02
432 462 1.664649 CGTGCAAAGGAGACGCTGA 60.665 57.895 0.00 0.00 0.00 4.26
433 463 1.621301 CTCGTGCAAAGGAGACGCTG 61.621 60.000 5.04 0.00 33.11 5.18
434 464 1.373497 CTCGTGCAAAGGAGACGCT 60.373 57.895 5.04 0.00 33.11 5.07
435 465 2.383527 CCTCGTGCAAAGGAGACGC 61.384 63.158 10.29 0.00 35.83 5.19
440 470 0.250295 CAACCTCCTCGTGCAAAGGA 60.250 55.000 16.21 16.21 40.67 3.36
441 471 1.237285 CCAACCTCCTCGTGCAAAGG 61.237 60.000 9.66 9.66 35.05 3.11
442 472 1.237285 CCCAACCTCCTCGTGCAAAG 61.237 60.000 0.00 0.00 0.00 2.77
443 473 1.228124 CCCAACCTCCTCGTGCAAA 60.228 57.895 0.00 0.00 0.00 3.68
444 474 2.429930 CCCAACCTCCTCGTGCAA 59.570 61.111 0.00 0.00 0.00 4.08
446 476 2.692273 AAACCCCAACCTCCTCGTGC 62.692 60.000 0.00 0.00 0.00 5.34
447 477 0.605589 GAAACCCCAACCTCCTCGTG 60.606 60.000 0.00 0.00 0.00 4.35
448 478 0.767060 AGAAACCCCAACCTCCTCGT 60.767 55.000 0.00 0.00 0.00 4.18
449 479 0.036294 GAGAAACCCCAACCTCCTCG 60.036 60.000 0.00 0.00 0.00 4.63
450 480 1.064825 TGAGAAACCCCAACCTCCTC 58.935 55.000 0.00 0.00 0.00 3.71
451 481 1.636003 GATGAGAAACCCCAACCTCCT 59.364 52.381 0.00 0.00 0.00 3.69
452 482 1.679032 CGATGAGAAACCCCAACCTCC 60.679 57.143 0.00 0.00 0.00 4.30
459 516 1.305930 GCCACACGATGAGAAACCCC 61.306 60.000 0.00 0.00 0.00 4.95
461 518 1.197721 CTTGCCACACGATGAGAAACC 59.802 52.381 0.00 0.00 0.00 3.27
472 529 4.705023 ACCTAATACCAAATCTTGCCACAC 59.295 41.667 0.00 0.00 0.00 3.82
474 531 4.705023 ACACCTAATACCAAATCTTGCCAC 59.295 41.667 0.00 0.00 0.00 5.01
479 536 9.178758 GATCTGAAACACCTAATACCAAATCTT 57.821 33.333 0.00 0.00 0.00 2.40
489 546 6.769822 CCTTGCATAGATCTGAAACACCTAAT 59.230 38.462 5.18 0.00 0.00 1.73
491 548 5.396772 CCCTTGCATAGATCTGAAACACCTA 60.397 44.000 5.18 0.00 0.00 3.08
509 566 1.299089 GCACACGTTGAACCCTTGC 60.299 57.895 0.00 0.00 0.00 4.01
510 567 0.667993 ATGCACACGTTGAACCCTTG 59.332 50.000 0.00 0.00 0.00 3.61
523 580 0.321564 CCGGGAAGTCTTCATGCACA 60.322 55.000 14.49 0.00 0.00 4.57
545 640 6.402334 CGAACCTAGCTTATCTTATCGACGAT 60.402 42.308 15.74 15.74 0.00 3.73
548 643 5.048852 ACCGAACCTAGCTTATCTTATCGAC 60.049 44.000 0.00 0.00 0.00 4.20
553 648 5.075493 CCCTACCGAACCTAGCTTATCTTA 58.925 45.833 0.00 0.00 0.00 2.10
557 652 2.178544 TCCCCTACCGAACCTAGCTTAT 59.821 50.000 0.00 0.00 0.00 1.73
563 659 1.454479 CGCTCCCCTACCGAACCTA 60.454 63.158 0.00 0.00 0.00 3.08
564 660 2.758737 CGCTCCCCTACCGAACCT 60.759 66.667 0.00 0.00 0.00 3.50
566 662 3.073101 ACCGCTCCCCTACCGAAC 61.073 66.667 0.00 0.00 0.00 3.95
605 701 1.003580 ACCACTACTGCCACCAGAATG 59.996 52.381 0.00 0.00 41.77 2.67
631 727 2.224281 ACAGCAAGATTTCGAGACCACA 60.224 45.455 0.00 0.00 0.00 4.17
669 765 9.927081 ATTATAAAAGTTCACTGGGATCATCTT 57.073 29.630 0.00 0.00 0.00 2.40
677 773 9.613428 TCACATCTATTATAAAAGTTCACTGGG 57.387 33.333 0.00 0.00 0.00 4.45
721 829 8.608185 TTTTAGGAAAAATCATCCTGGCTAAT 57.392 30.769 5.36 0.00 46.72 1.73
775 904 3.489416 GCCCACACATCGTTTTTCTTTTC 59.511 43.478 0.00 0.00 0.00 2.29
786 915 0.802494 GGTTAACTGCCCACACATCG 59.198 55.000 5.42 0.00 0.00 3.84
798 999 2.339769 AGTCTTCAGCCCAGGTTAACT 58.660 47.619 5.42 0.00 0.00 2.24
847 1048 1.508088 CATGAAGCGGCCCAGAAAC 59.492 57.895 0.00 0.00 0.00 2.78
864 1065 3.497115 TCTGTTGTGGCCTGCCCA 61.497 61.111 3.32 0.38 42.79 5.36
865 1066 2.985847 GTCTGTTGTGGCCTGCCC 60.986 66.667 3.32 0.00 34.56 5.36
881 1082 1.628846 ACCTATCTTCCGCAAACAGGT 59.371 47.619 0.00 0.00 0.00 4.00
912 1118 4.473444 TGCAAAGAAGGAAGGAATCAACT 58.527 39.130 0.00 0.00 0.00 3.16
937 1143 4.870012 GAATTCCCCCGCCGGACC 62.870 72.222 5.05 0.00 0.00 4.46
991 1198 3.470888 CGACCCCATCTCGCCCTT 61.471 66.667 0.00 0.00 0.00 3.95
1168 1382 2.201708 GGTAGCTACGGGGAGAGGC 61.202 68.421 17.48 0.00 0.00 4.70
1171 1385 0.851469 AGATGGTAGCTACGGGGAGA 59.149 55.000 17.48 0.00 0.00 3.71
1172 1386 0.962489 CAGATGGTAGCTACGGGGAG 59.038 60.000 17.48 4.07 0.00 4.30
1187 1409 1.202463 CGAGAAGCGGTGGAATCAGAT 60.202 52.381 0.00 0.00 36.03 2.90
1345 1567 4.307432 CGACCAAGTTCCTAATCGCATAT 58.693 43.478 0.00 0.00 0.00 1.78
1351 1573 3.596214 TCAAGCGACCAAGTTCCTAATC 58.404 45.455 0.00 0.00 0.00 1.75
1352 1574 3.600388 CTCAAGCGACCAAGTTCCTAAT 58.400 45.455 0.00 0.00 0.00 1.73
1353 1575 2.870435 GCTCAAGCGACCAAGTTCCTAA 60.870 50.000 0.00 0.00 0.00 2.69
1355 1577 0.603975 GCTCAAGCGACCAAGTTCCT 60.604 55.000 0.00 0.00 0.00 3.36
1356 1578 0.884704 TGCTCAAGCGACCAAGTTCC 60.885 55.000 0.00 0.00 45.83 3.62
1379 1887 4.108570 TCAGGATTTGCCTCTTAACCCTA 58.891 43.478 0.00 0.00 46.97 3.53
1438 1946 1.961133 ATTTTGGGACGGAGGGAGTA 58.039 50.000 0.00 0.00 0.00 2.59
1439 1947 1.838077 CTATTTTGGGACGGAGGGAGT 59.162 52.381 0.00 0.00 0.00 3.85
1440 1948 2.116238 TCTATTTTGGGACGGAGGGAG 58.884 52.381 0.00 0.00 0.00 4.30
1441 1949 2.257391 TCTATTTTGGGACGGAGGGA 57.743 50.000 0.00 0.00 0.00 4.20
1442 1950 2.438021 TCATCTATTTTGGGACGGAGGG 59.562 50.000 0.00 0.00 0.00 4.30
1443 1951 3.467803 GTCATCTATTTTGGGACGGAGG 58.532 50.000 0.00 0.00 0.00 4.30
1444 1952 3.467803 GGTCATCTATTTTGGGACGGAG 58.532 50.000 0.00 0.00 0.00 4.63
1445 1953 2.171870 GGGTCATCTATTTTGGGACGGA 59.828 50.000 0.00 0.00 0.00 4.69
1446 1954 2.092646 TGGGTCATCTATTTTGGGACGG 60.093 50.000 0.00 0.00 0.00 4.79
1447 1955 3.275617 TGGGTCATCTATTTTGGGACG 57.724 47.619 0.00 0.00 0.00 4.79
1448 1956 4.600062 AGTTGGGTCATCTATTTTGGGAC 58.400 43.478 0.00 0.00 0.00 4.46
1449 1957 4.946160 AGTTGGGTCATCTATTTTGGGA 57.054 40.909 0.00 0.00 0.00 4.37
1450 1958 5.245977 ACAAAGTTGGGTCATCTATTTTGGG 59.754 40.000 0.00 0.00 0.00 4.12
1451 1959 6.345096 ACAAAGTTGGGTCATCTATTTTGG 57.655 37.500 0.00 0.00 0.00 3.28
1452 1960 8.110860 AGTACAAAGTTGGGTCATCTATTTTG 57.889 34.615 0.00 0.00 0.00 2.44
1453 1961 9.802039 TTAGTACAAAGTTGGGTCATCTATTTT 57.198 29.630 0.00 0.00 0.00 1.82
1454 1962 9.802039 TTTAGTACAAAGTTGGGTCATCTATTT 57.198 29.630 0.00 0.00 0.00 1.40
1455 1963 9.449719 CTTTAGTACAAAGTTGGGTCATCTATT 57.550 33.333 0.00 0.00 0.00 1.73
1456 1964 8.603304 ACTTTAGTACAAAGTTGGGTCATCTAT 58.397 33.333 14.04 0.00 37.18 1.98
1457 1965 7.970102 ACTTTAGTACAAAGTTGGGTCATCTA 58.030 34.615 14.04 0.00 37.18 1.98
1458 1966 6.838382 ACTTTAGTACAAAGTTGGGTCATCT 58.162 36.000 14.04 0.00 37.18 2.90
1459 1967 7.506328 AACTTTAGTACAAAGTTGGGTCATC 57.494 36.000 23.48 0.00 45.58 2.92
1460 1968 8.215736 ACTAACTTTAGTACAAAGTTGGGTCAT 58.784 33.333 28.62 17.19 46.38 3.06
1461 1969 7.567458 ACTAACTTTAGTACAAAGTTGGGTCA 58.433 34.615 28.62 17.50 46.38 4.02
1474 1982 8.703743 TGACCCAGTTTTGTACTAACTTTAGTA 58.296 33.333 10.13 4.98 43.36 1.82
1475 1983 7.567458 TGACCCAGTTTTGTACTAACTTTAGT 58.433 34.615 10.13 6.85 45.39 2.24
1476 1984 8.617290 ATGACCCAGTTTTGTACTAACTTTAG 57.383 34.615 10.13 0.00 34.56 1.85
1477 1985 8.434392 AGATGACCCAGTTTTGTACTAACTTTA 58.566 33.333 10.13 0.00 34.56 1.85
1478 1986 7.287810 AGATGACCCAGTTTTGTACTAACTTT 58.712 34.615 10.13 1.07 34.56 2.66
1479 1987 6.838382 AGATGACCCAGTTTTGTACTAACTT 58.162 36.000 10.13 0.00 34.56 2.66
1480 1988 6.435292 AGATGACCCAGTTTTGTACTAACT 57.565 37.500 7.78 7.78 34.56 2.24
1481 1989 8.788325 AATAGATGACCCAGTTTTGTACTAAC 57.212 34.615 0.00 0.00 34.56 2.34
1482 1990 9.802039 AAAATAGATGACCCAGTTTTGTACTAA 57.198 29.630 0.00 0.00 34.56 2.24
1483 1991 9.226606 CAAAATAGATGACCCAGTTTTGTACTA 57.773 33.333 0.00 0.00 34.56 1.82
1484 1992 7.942341 TCAAAATAGATGACCCAGTTTTGTACT 59.058 33.333 0.00 0.00 37.63 2.73
1485 1993 8.106247 TCAAAATAGATGACCCAGTTTTGTAC 57.894 34.615 0.00 0.00 37.63 2.90
1486 1994 8.698973 TTCAAAATAGATGACCCAGTTTTGTA 57.301 30.769 0.00 0.00 37.63 2.41
1487 1995 7.595819 TTCAAAATAGATGACCCAGTTTTGT 57.404 32.000 0.00 0.00 37.63 2.83
1488 1996 7.114811 CGTTTCAAAATAGATGACCCAGTTTTG 59.885 37.037 0.00 0.00 37.69 2.44
1489 1997 7.145323 CGTTTCAAAATAGATGACCCAGTTTT 58.855 34.615 0.00 0.00 0.00 2.43
1490 1998 6.294508 CCGTTTCAAAATAGATGACCCAGTTT 60.295 38.462 0.00 0.00 0.00 2.66
1491 1999 5.183140 CCGTTTCAAAATAGATGACCCAGTT 59.817 40.000 0.00 0.00 0.00 3.16
1492 2000 4.700213 CCGTTTCAAAATAGATGACCCAGT 59.300 41.667 0.00 0.00 0.00 4.00
1493 2001 4.941263 TCCGTTTCAAAATAGATGACCCAG 59.059 41.667 0.00 0.00 0.00 4.45
1494 2002 4.912586 TCCGTTTCAAAATAGATGACCCA 58.087 39.130 0.00 0.00 0.00 4.51
1495 2003 4.335594 CCTCCGTTTCAAAATAGATGACCC 59.664 45.833 0.00 0.00 0.00 4.46
1496 2004 4.335594 CCCTCCGTTTCAAAATAGATGACC 59.664 45.833 0.00 0.00 0.00 4.02
1497 2005 5.183228 TCCCTCCGTTTCAAAATAGATGAC 58.817 41.667 0.00 0.00 0.00 3.06
1498 2006 5.045869 ACTCCCTCCGTTTCAAAATAGATGA 60.046 40.000 0.00 0.00 0.00 2.92
1499 2007 5.186198 ACTCCCTCCGTTTCAAAATAGATG 58.814 41.667 0.00 0.00 0.00 2.90
1500 2008 5.437191 ACTCCCTCCGTTTCAAAATAGAT 57.563 39.130 0.00 0.00 0.00 1.98
1501 2009 4.903045 ACTCCCTCCGTTTCAAAATAGA 57.097 40.909 0.00 0.00 0.00 1.98
1502 2010 8.904099 AATATACTCCCTCCGTTTCAAAATAG 57.096 34.615 0.00 0.00 0.00 1.73
1503 2011 8.711170 AGAATATACTCCCTCCGTTTCAAAATA 58.289 33.333 0.00 0.00 0.00 1.40
1504 2012 7.574607 AGAATATACTCCCTCCGTTTCAAAAT 58.425 34.615 0.00 0.00 0.00 1.82
1505 2013 6.954232 AGAATATACTCCCTCCGTTTCAAAA 58.046 36.000 0.00 0.00 0.00 2.44
1506 2014 6.555463 AGAATATACTCCCTCCGTTTCAAA 57.445 37.500 0.00 0.00 0.00 2.69
1507 2015 7.664552 TTAGAATATACTCCCTCCGTTTCAA 57.335 36.000 0.00 0.00 0.00 2.69
1508 2016 6.239232 GCTTAGAATATACTCCCTCCGTTTCA 60.239 42.308 0.00 0.00 0.00 2.69
1509 2017 6.157904 GCTTAGAATATACTCCCTCCGTTTC 58.842 44.000 0.00 0.00 0.00 2.78
1510 2018 5.601313 TGCTTAGAATATACTCCCTCCGTTT 59.399 40.000 0.00 0.00 0.00 3.60
1511 2019 5.145564 TGCTTAGAATATACTCCCTCCGTT 58.854 41.667 0.00 0.00 0.00 4.44
1512 2020 4.737578 TGCTTAGAATATACTCCCTCCGT 58.262 43.478 0.00 0.00 0.00 4.69
1513 2021 5.010933 TCTGCTTAGAATATACTCCCTCCG 58.989 45.833 0.00 0.00 0.00 4.63
1514 2022 6.919775 TTCTGCTTAGAATATACTCCCTCC 57.080 41.667 0.00 0.00 0.00 4.30
1515 2023 9.213799 CAAATTCTGCTTAGAATATACTCCCTC 57.786 37.037 3.23 0.00 37.52 4.30
1643 2154 1.067821 CACGAGGAGTTAGGCAGGATC 59.932 57.143 0.00 0.00 0.00 3.36
1660 2171 2.494059 ACAAATGAGGTGGAAGTCACG 58.506 47.619 0.00 0.00 46.96 4.35
1664 2175 4.277476 TGTCAAACAAATGAGGTGGAAGT 58.723 39.130 0.00 0.00 0.00 3.01
1667 2178 3.117701 TCCTGTCAAACAAATGAGGTGGA 60.118 43.478 0.00 0.00 0.00 4.02
1710 2221 7.279313 GTGAATGAAAAGCTTGCCATCAATAAT 59.721 33.333 0.00 0.00 0.00 1.28
1856 2367 4.191544 TCCATGTCAACTAATGCTACTGC 58.808 43.478 0.00 0.00 40.20 4.40
1858 2369 6.765036 CAGAATCCATGTCAACTAATGCTACT 59.235 38.462 0.00 0.00 0.00 2.57
1951 2462 5.419471 TGAATCCATTTTCATGTGATGAGCA 59.581 36.000 0.00 0.00 40.94 4.26
2058 2571 6.092748 GCTTGAACGGTATCAACATGAATTT 58.907 36.000 0.00 0.00 35.55 1.82
2259 2772 5.768980 TCAGAGGAAAATGGATGTCTCTT 57.231 39.130 0.00 0.00 30.20 2.85
2317 2830 8.410141 ACGTTTTAATCTTTTGTTGATCTTCCA 58.590 29.630 0.00 0.00 0.00 3.53
2326 2842 9.030301 CCAAATGAGACGTTTTAATCTTTTGTT 57.970 29.630 16.39 0.00 36.14 2.83
2341 2857 7.827819 TCTACTTGAAATACCAAATGAGACG 57.172 36.000 0.00 0.00 0.00 4.18
2419 2936 0.389948 AGTTCGGATCGAAGCCACAC 60.390 55.000 2.83 4.01 46.54 3.82
2427 2944 4.202020 CCAACTCTATGAAGTTCGGATCGA 60.202 45.833 0.00 0.00 37.38 3.59
2430 2947 5.422214 AACCAACTCTATGAAGTTCGGAT 57.578 39.130 0.00 0.00 37.38 4.18
2509 3036 8.917088 ACCATTTATTTTGCAGCTAGATTATGT 58.083 29.630 0.00 0.00 0.00 2.29
2534 3061 5.178809 GGTGTCCTGTACATAACAAGTTCAC 59.821 44.000 10.94 3.96 41.10 3.18
2813 3349 6.516718 TCTGCAGCTAACTATAATCAGTTCC 58.483 40.000 9.47 0.00 39.45 3.62
2859 3398 8.750515 ATTCACACATGTATGGACAAATATCA 57.249 30.769 3.90 0.00 39.59 2.15
2886 3425 6.775142 TCTTGGTCATGTGGATTCTAAACAAA 59.225 34.615 0.00 0.00 0.00 2.83
3060 3607 5.678955 AAATAGGTTCCAGTAGAGGACAC 57.321 43.478 0.00 0.00 37.42 3.67
3061 3608 5.783360 TGAAAATAGGTTCCAGTAGAGGACA 59.217 40.000 0.00 0.00 37.42 4.02
3156 3703 9.341178 TCCATCAAAAGGAAACAGGGTACTGAT 62.341 40.741 1.21 0.00 38.45 2.90
3241 3789 1.132453 CGGCGAGACATCTGACAAGTA 59.868 52.381 0.00 0.00 0.00 2.24
3286 3834 1.152419 TCAACTGGGAGACGGGTCA 60.152 57.895 1.17 0.00 0.00 4.02
3291 3839 1.734477 CACGCTCAACTGGGAGACG 60.734 63.158 3.21 7.85 39.02 4.18
3292 3840 0.667792 GACACGCTCAACTGGGAGAC 60.668 60.000 3.21 0.00 37.05 3.36
3293 3841 1.112916 TGACACGCTCAACTGGGAGA 61.113 55.000 3.21 0.00 37.05 3.71
3335 3884 2.167693 GGATTGACATCTCGTACCCACA 59.832 50.000 0.00 0.00 0.00 4.17
3404 3953 2.759985 GGTCTTGGACAGAGGACCA 58.240 57.895 6.16 0.00 45.23 4.02
3434 3986 5.239525 ACAACTAGAGGTGCAAGTGAATTTC 59.760 40.000 0.00 0.00 0.00 2.17
3474 4033 4.652822 AGGTGTGGTCCATAACTTCTTTC 58.347 43.478 0.00 0.00 0.00 2.62
3531 4097 2.870411 GGCACCTATGGATCGTTTGTAC 59.130 50.000 0.00 0.00 0.00 2.90
3593 4160 1.037493 GTGTTTCCCTTCCCACCAAC 58.963 55.000 0.00 0.00 0.00 3.77
3669 4236 0.458260 AAACTTGCCACCGTTTGACC 59.542 50.000 0.00 0.00 32.55 4.02
3801 5505 5.717654 AGTTTGACCAAGTTTACAGGGAAAA 59.282 36.000 0.00 0.00 0.00 2.29
3802 5506 5.265989 AGTTTGACCAAGTTTACAGGGAAA 58.734 37.500 0.00 0.00 0.00 3.13
3805 5509 5.348164 CAAAGTTTGACCAAGTTTACAGGG 58.652 41.667 10.19 0.00 36.07 4.45
3831 5535 0.521735 GAAGGCCTACAAGCAAACGG 59.478 55.000 5.16 0.00 0.00 4.44
3851 5555 7.775053 AAAATACTGCCTCCATACTTGAAAA 57.225 32.000 0.00 0.00 0.00 2.29
3917 5634 8.052748 TGCATGGACCAAATAAGACTAGTTTAT 58.947 33.333 0.00 1.02 0.00 1.40
3918 5635 7.335924 GTGCATGGACCAAATAAGACTAGTTTA 59.664 37.037 5.98 0.00 0.00 2.01
3924 6211 4.307032 AGTGCATGGACCAAATAAGACT 57.693 40.909 14.38 0.00 0.00 3.24
3942 6229 0.254178 CCTCCTCCATGGACCAAGTG 59.746 60.000 11.44 0.00 40.56 3.16
3944 6231 0.254178 CACCTCCTCCATGGACCAAG 59.746 60.000 11.44 8.25 40.56 3.61
3945 6232 1.207488 CCACCTCCTCCATGGACCAA 61.207 60.000 11.44 0.00 40.56 3.67
3946 6233 1.616327 CCACCTCCTCCATGGACCA 60.616 63.158 11.44 0.00 40.56 4.02
3947 6234 2.378634 CCCACCTCCTCCATGGACC 61.379 68.421 11.44 0.00 40.56 4.46
3948 6235 1.616628 ACCCACCTCCTCCATGGAC 60.617 63.158 11.44 0.00 40.56 4.02
3949 6236 1.616327 CACCCACCTCCTCCATGGA 60.616 63.158 15.27 15.27 43.86 3.41
3950 6237 1.616327 TCACCCACCTCCTCCATGG 60.616 63.158 4.97 4.97 37.10 3.66
3951 6238 1.604378 GTCACCCACCTCCTCCATG 59.396 63.158 0.00 0.00 0.00 3.66
3952 6239 1.616628 GGTCACCCACCTCCTCCAT 60.617 63.158 0.00 0.00 42.84 3.41
3953 6240 2.203938 GGTCACCCACCTCCTCCA 60.204 66.667 0.00 0.00 42.84 3.86
3961 6248 1.906574 TCATGGACTAAGGTCACCCAC 59.093 52.381 0.00 0.00 43.77 4.61
3962 6249 2.187958 CTCATGGACTAAGGTCACCCA 58.812 52.381 0.00 0.00 43.77 4.51
3963 6250 1.486726 CCTCATGGACTAAGGTCACCC 59.513 57.143 0.00 0.00 43.77 4.61
3964 6251 1.486726 CCCTCATGGACTAAGGTCACC 59.513 57.143 0.00 0.00 43.77 4.02
3965 6252 2.467880 TCCCTCATGGACTAAGGTCAC 58.532 52.381 0.00 0.00 43.77 3.67
3966 6253 2.940514 TCCCTCATGGACTAAGGTCA 57.059 50.000 0.00 0.00 43.77 4.02
3977 6264 2.310251 TGGACCACCATCCCTCATG 58.690 57.895 0.00 0.00 41.77 3.07
3978 6265 4.940571 TGGACCACCATCCCTCAT 57.059 55.556 0.00 0.00 41.77 2.90
3987 6274 0.324645 ATCAAGCCCAATGGACCACC 60.325 55.000 0.00 0.00 0.00 4.61
3988 6275 1.478105 GAATCAAGCCCAATGGACCAC 59.522 52.381 0.00 0.00 0.00 4.16
3989 6276 1.358787 AGAATCAAGCCCAATGGACCA 59.641 47.619 0.00 0.00 0.00 4.02
3990 6277 2.149973 AGAATCAAGCCCAATGGACC 57.850 50.000 0.00 0.00 0.00 4.46
3991 6278 5.859205 AATAAGAATCAAGCCCAATGGAC 57.141 39.130 0.00 0.00 0.00 4.02
3992 6279 6.197168 AGAAATAAGAATCAAGCCCAATGGA 58.803 36.000 0.00 0.00 0.00 3.41
3993 6280 6.475596 AGAAATAAGAATCAAGCCCAATGG 57.524 37.500 0.00 0.00 0.00 3.16
3994 6281 9.305925 GTTAAGAAATAAGAATCAAGCCCAATG 57.694 33.333 0.00 0.00 0.00 2.82
3995 6282 9.034800 TGTTAAGAAATAAGAATCAAGCCCAAT 57.965 29.630 0.00 0.00 0.00 3.16
3996 6283 8.303876 GTGTTAAGAAATAAGAATCAAGCCCAA 58.696 33.333 0.00 0.00 0.00 4.12
4008 6608 9.994432 CAGATAAAGGCAGTGTTAAGAAATAAG 57.006 33.333 0.00 0.00 0.00 1.73
4073 6673 4.592942 TCTGCTGCCTTGAATCAACTAAT 58.407 39.130 0.00 0.00 0.00 1.73
4217 6817 1.603456 TCAGTTTGCCTTTCATCGCA 58.397 45.000 0.00 0.00 0.00 5.10
4313 6913 7.012704 AGACCATTACATATGTTGAGAATGTGC 59.987 37.037 14.77 10.74 35.54 4.57
4389 6989 4.568072 TTATTCTTTAGGTCTGGCTGCA 57.432 40.909 0.50 0.00 0.00 4.41
4435 7035 1.142870 ACCAAGCTGGCTCAAGTACAA 59.857 47.619 0.00 0.00 42.67 2.41
4437 7037 1.160137 CACCAAGCTGGCTCAAGTAC 58.840 55.000 0.00 0.00 42.67 2.73
4505 7119 2.665008 TATCCGCCTGCAGTGCATCC 62.665 60.000 20.10 11.47 38.13 3.51
4510 7124 0.602106 CTCCATATCCGCCTGCAGTG 60.602 60.000 13.81 5.37 0.00 3.66
4629 7246 2.365293 GAGAGGGCAAAACACCAATTGT 59.635 45.455 4.43 0.00 41.74 2.71
4660 7368 9.965824 CCATTTAGTTTGTGAAATACAGAACTT 57.034 29.630 0.00 0.00 41.10 2.66
4682 7390 1.271926 GGGTGCACCTAGTTGACCATT 60.272 52.381 33.91 0.00 35.85 3.16
4684 7392 1.758592 GGGTGCACCTAGTTGACCA 59.241 57.895 33.91 0.00 35.85 4.02
4685 7393 1.002502 GGGGTGCACCTAGTTGACC 60.003 63.158 33.91 21.11 40.03 4.02
4687 7395 0.766674 ACAGGGGTGCACCTAGTTGA 60.767 55.000 33.91 0.00 39.34 3.18
4688 7396 0.110486 AACAGGGGTGCACCTAGTTG 59.890 55.000 33.91 25.76 39.34 3.16
4702 7410 4.755123 CCAGACTTGTACCAAACTAACAGG 59.245 45.833 0.00 0.00 0.00 4.00
4775 7507 5.349817 CCAATATCGTCCAGATGTAGAATGC 59.650 44.000 0.00 0.00 40.40 3.56
4782 7514 2.689658 TCCCCAATATCGTCCAGATGT 58.310 47.619 0.00 0.00 40.40 3.06
4791 7523 4.499696 GCATGTCCTTTTTCCCCAATATCG 60.500 45.833 0.00 0.00 0.00 2.92
4807 7540 2.365293 AGTCCAACAAAAAGGCATGTCC 59.635 45.455 0.00 0.00 0.00 4.02
4814 7547 7.693969 AGATCAATCTAGTCCAACAAAAAGG 57.306 36.000 0.00 0.00 34.85 3.11
4849 7582 2.028658 TGATGAGTTCGCTGCTTCTTCT 60.029 45.455 0.00 0.00 0.00 2.85
4858 7601 2.766263 TGTAAGGGATGATGAGTTCGCT 59.234 45.455 0.00 0.00 36.79 4.93
4903 7646 7.712264 TTTTTATTTGCATTGGAGTGAGTTG 57.288 32.000 0.00 0.00 0.00 3.16
4924 7667 7.804147 TCCCCCATTGTAGTACGTATAATTTT 58.196 34.615 0.00 0.00 0.00 1.82
4934 7677 5.997843 AGTGTAATTCCCCCATTGTAGTAC 58.002 41.667 0.00 0.00 0.00 2.73
4935 7678 5.968167 AGAGTGTAATTCCCCCATTGTAGTA 59.032 40.000 0.00 0.00 0.00 1.82
4936 7679 4.788617 AGAGTGTAATTCCCCCATTGTAGT 59.211 41.667 0.00 0.00 0.00 2.73
4938 7681 6.388689 ACATAGAGTGTAATTCCCCCATTGTA 59.611 38.462 0.00 0.00 39.91 2.41
4939 7682 5.193728 ACATAGAGTGTAATTCCCCCATTGT 59.806 40.000 0.00 0.00 39.91 2.71
4940 7683 5.694995 ACATAGAGTGTAATTCCCCCATTG 58.305 41.667 0.00 0.00 39.91 2.82
4942 7685 6.215636 GGATACATAGAGTGTAATTCCCCCAT 59.784 42.308 0.00 0.00 45.87 4.00
4943 7686 5.546499 GGATACATAGAGTGTAATTCCCCCA 59.454 44.000 0.00 0.00 45.87 4.96
4989 7732 8.178313 GGTTTGAGCTTTACTAGATTGATTGAC 58.822 37.037 0.00 0.00 0.00 3.18
5003 7746 3.102052 ACGTTCGAGGTTTGAGCTTTA 57.898 42.857 0.00 0.00 0.00 1.85
5004 7747 1.949465 ACGTTCGAGGTTTGAGCTTT 58.051 45.000 0.00 0.00 0.00 3.51
5006 7749 2.806608 TTACGTTCGAGGTTTGAGCT 57.193 45.000 0.00 0.00 0.00 4.09
5007 7750 3.251571 AGATTACGTTCGAGGTTTGAGC 58.748 45.455 0.00 0.00 0.00 4.26
5008 7751 3.858238 GGAGATTACGTTCGAGGTTTGAG 59.142 47.826 0.00 0.00 0.00 3.02
5021 7765 4.375272 ACAAGCATGAGATGGAGATTACG 58.625 43.478 0.00 0.00 0.00 3.18
5063 7807 1.203187 AGCAAGGTGGTAGACAGAGGA 60.203 52.381 0.00 0.00 0.00 3.71
5082 7826 1.225704 GGGTGAGGAAGGATGGCAG 59.774 63.158 0.00 0.00 0.00 4.85
5111 7855 3.342377 TTTGATATCAGCCCGTGTGAA 57.658 42.857 5.39 0.00 0.00 3.18
5126 7870 3.009916 AGAAGGCCAGACTCACATTTGAT 59.990 43.478 5.01 0.00 0.00 2.57
5150 7894 2.360852 CAGCACCTCAAGGCAGGG 60.361 66.667 0.00 0.00 37.96 4.45


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.