Multiple sequence alignment - TraesCS4B01G074100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G074100 chr4B 100.000 6513 0 0 1 6513 69374769 69381281 0.000000e+00 12028.0
1 TraesCS4B01G074100 chr4B 79.835 1334 239 21 4168 5483 518098142 518099463 0.000000e+00 946.0
2 TraesCS4B01G074100 chr4B 78.786 1334 244 30 4159 5471 19736659 19737974 0.000000e+00 859.0
3 TraesCS4B01G074100 chr4B 84.946 465 67 2 3279 3743 518097475 518097936 9.890000e-128 468.0
4 TraesCS4B01G074100 chr4B 83.406 458 72 2 3274 3730 19736094 19736548 7.810000e-114 422.0
5 TraesCS4B01G074100 chr4B 83.113 302 47 4 1145 1444 518095383 518095682 8.320000e-69 272.0
6 TraesCS4B01G074100 chr4B 83.451 284 37 8 1166 1444 19735616 19735894 8.380000e-64 255.0
7 TraesCS4B01G074100 chr4D 93.106 2379 107 27 4154 6513 47535725 47533385 0.000000e+00 3432.0
8 TraesCS4B01G074100 chr4D 90.420 1764 79 37 2339 4035 47537466 47535726 0.000000e+00 2239.0
9 TraesCS4B01G074100 chr4D 91.724 1317 52 23 523 1799 47539584 47538285 0.000000e+00 1775.0
10 TraesCS4B01G074100 chr4D 79.819 1328 236 23 4168 5476 420942851 420944165 0.000000e+00 939.0
11 TraesCS4B01G074100 chr4D 78.206 1349 256 31 4152 5480 10250852 10252182 0.000000e+00 828.0
12 TraesCS4B01G074100 chr4D 84.301 465 70 2 3279 3743 420942187 420942648 9.960000e-123 451.0
13 TraesCS4B01G074100 chr4D 83.628 452 69 3 3280 3730 10250300 10250747 2.810000e-113 420.0
14 TraesCS4B01G074100 chr4D 83.509 285 37 8 1165 1444 10249563 10249842 2.330000e-64 257.0
15 TraesCS4B01G074100 chr4D 82.456 114 9 8 1878 1980 47538279 47538166 8.990000e-14 89.8
16 TraesCS4B01G074100 chr4A 92.821 1755 84 20 4153 5876 550482523 550480780 0.000000e+00 2505.0
17 TraesCS4B01G074100 chr4A 89.198 1907 100 32 1 1839 550488438 550486570 0.000000e+00 2283.0
18 TraesCS4B01G074100 chr4A 79.691 1359 244 23 4168 5507 43233063 43231718 0.000000e+00 952.0
19 TraesCS4B01G074100 chr4A 90.423 710 25 26 3261 3961 550483274 550482599 0.000000e+00 894.0
20 TraesCS4B01G074100 chr4A 86.364 836 74 15 2448 3257 550484136 550483315 0.000000e+00 876.0
21 TraesCS4B01G074100 chr4A 90.563 657 30 12 5864 6513 550480701 550480070 0.000000e+00 841.0
22 TraesCS4B01G074100 chr4A 77.778 1350 253 37 4159 5483 593356270 593354943 0.000000e+00 787.0
23 TraesCS4B01G074100 chr4A 85.806 465 63 2 3279 3743 43233726 43233265 2.110000e-134 490.0
24 TraesCS4B01G074100 chr4A 82.965 452 74 1 3279 3730 593356829 593356381 7.860000e-109 405.0
25 TraesCS4B01G074100 chr4A 84.590 305 43 4 1145 1447 43235732 43235430 3.820000e-77 300.0
26 TraesCS4B01G074100 chr4A 85.714 287 31 9 1166 1447 593357385 593357104 1.780000e-75 294.0
27 TraesCS4B01G074100 chr4A 91.667 156 9 2 1844 1997 550486486 550486333 5.120000e-51 213.0
28 TraesCS4B01G074100 chr4A 93.750 112 6 1 2026 2137 550486331 550486221 4.040000e-37 167.0
29 TraesCS4B01G074100 chr4A 92.308 52 4 0 4813 4864 440182292 440182343 2.520000e-09 75.0
30 TraesCS4B01G074100 chr6A 90.127 395 35 2 1 391 60422623 60422229 1.620000e-140 510.0
31 TraesCS4B01G074100 chr2A 88.776 392 40 2 1 388 36928268 36927877 1.640000e-130 477.0
32 TraesCS4B01G074100 chr6B 78.723 141 28 2 3605 3744 506546596 506546735 6.950000e-15 93.5
33 TraesCS4B01G074100 chr7B 85.393 89 11 2 117 203 183879440 183879528 2.500000e-14 91.6
34 TraesCS4B01G074100 chr7D 82.178 101 14 2 97 196 232828809 232828712 4.180000e-12 84.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G074100 chr4B 69374769 69381281 6512 False 12028.000000 12028 100.000000 1 6513 1 chr4B.!!$F1 6512
1 TraesCS4B01G074100 chr4B 518095383 518099463 4080 False 562.000000 946 82.631333 1145 5483 3 chr4B.!!$F3 4338
2 TraesCS4B01G074100 chr4B 19735616 19737974 2358 False 512.000000 859 81.881000 1166 5471 3 chr4B.!!$F2 4305
3 TraesCS4B01G074100 chr4D 47533385 47539584 6199 True 1883.950000 3432 89.426500 523 6513 4 chr4D.!!$R1 5990
4 TraesCS4B01G074100 chr4D 420942187 420944165 1978 False 695.000000 939 82.060000 3279 5476 2 chr4D.!!$F2 2197
5 TraesCS4B01G074100 chr4D 10249563 10252182 2619 False 501.666667 828 81.781000 1165 5480 3 chr4D.!!$F1 4315
6 TraesCS4B01G074100 chr4A 550480070 550488438 8368 True 1111.285714 2505 90.683714 1 6513 7 chr4A.!!$R2 6512
7 TraesCS4B01G074100 chr4A 43231718 43235732 4014 True 580.666667 952 83.362333 1145 5507 3 chr4A.!!$R1 4362
8 TraesCS4B01G074100 chr4A 593354943 593357385 2442 True 495.333333 787 82.152333 1166 5483 3 chr4A.!!$R3 4317

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
311 329 0.112412 AAAGGCCCTCCAATCACGTT 59.888 50.0 0.00 0.00 33.74 3.99 F
633 661 0.325203 ATATGCCCAAACACCACCCC 60.325 55.0 0.00 0.00 0.00 4.95 F
2251 3183 0.179200 CATAAAAGCACGTCCACGGC 60.179 55.0 3.81 4.44 44.95 5.68 F
3785 7416 0.327924 ATTGGAAGTCACATGCGGGA 59.672 50.0 0.00 0.00 0.00 5.14 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2250 3182 0.179081 CTCCGGCCACTTTACCTAGC 60.179 60.0 2.24 0.0 0.0 3.42 R
2387 3376 0.320697 GGCAGTTTGTCCTACGGTCT 59.679 55.0 0.00 0.0 0.0 3.85 R
4079 7736 0.033208 TCGTACCGGGGTCCAATACT 60.033 55.0 6.32 0.0 0.0 2.12 R
5532 9208 0.543749 CTCTACCCCTTCCCTGCAAG 59.456 60.0 0.00 0.0 0.0 4.01 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 7.388460 CTAGGAGAGCATTGTTTCTTTCATT 57.612 36.000 0.00 0.00 0.00 2.57
41 42 6.945636 TCTTTCATTAGAAACCCTCCTACA 57.054 37.500 0.00 0.00 38.76 2.74
55 56 5.693769 CCTCCTACAAACAAGGGATAAGA 57.306 43.478 0.00 0.00 34.66 2.10
60 61 5.823045 CCTACAAACAAGGGATAAGACATCC 59.177 44.000 0.00 0.00 37.47 3.51
64 65 5.983333 AACAAGGGATAAGACATCCTGAT 57.017 39.130 3.44 0.00 38.26 2.90
90 91 7.739498 TTGATTCCAAAACTCCTTAGTGTAC 57.261 36.000 0.00 0.00 35.62 2.90
94 95 5.152934 TCCAAAACTCCTTAGTGTACCTCT 58.847 41.667 0.00 0.00 35.62 3.69
96 97 5.246429 CCAAAACTCCTTAGTGTACCTCTCT 59.754 44.000 0.00 0.00 35.62 3.10
101 115 6.367161 ACTCCTTAGTGTACCTCTCTATTCC 58.633 44.000 0.00 0.00 33.57 3.01
104 118 3.666345 AGTGTACCTCTCTATTCCGGT 57.334 47.619 0.00 0.00 0.00 5.28
110 124 2.225318 ACCTCTCTATTCCGGTATCCCC 60.225 54.545 0.00 0.00 0.00 4.81
139 153 5.934402 AACACCTTAGTCACTATACCTGG 57.066 43.478 0.00 0.00 0.00 4.45
140 154 3.705072 ACACCTTAGTCACTATACCTGGC 59.295 47.826 0.00 0.00 0.00 4.85
142 156 4.345257 CACCTTAGTCACTATACCTGGCAT 59.655 45.833 0.00 0.00 0.00 4.40
144 158 5.539193 ACCTTAGTCACTATACCTGGCATAC 59.461 44.000 0.00 0.00 0.00 2.39
157 171 3.067106 CTGGCATACGATGTTGGATACC 58.933 50.000 0.00 0.00 0.00 2.73
196 210 2.715737 GAGTGTATCTCTCCATCGCC 57.284 55.000 0.00 0.00 39.86 5.54
240 258 7.919091 TCTTGATCGTGTACCACATAATAGTTC 59.081 37.037 0.00 0.00 33.40 3.01
242 260 5.266733 TCGTGTACCACATAATAGTTCCC 57.733 43.478 0.00 0.00 33.40 3.97
251 269 5.368989 CACATAATAGTTCCCTTCCACCTC 58.631 45.833 0.00 0.00 0.00 3.85
254 272 0.616679 TAGTTCCCTTCCACCTCCGG 60.617 60.000 0.00 0.00 0.00 5.14
278 296 4.154375 CGAGGTAGCTATCTAATTCGAGCA 59.846 45.833 6.48 0.00 36.13 4.26
285 303 3.634568 ATCTAATTCGAGCAGGAGTCG 57.365 47.619 0.00 0.00 38.84 4.18
304 322 0.331616 GGAGCTAAAAGGCCCTCCAA 59.668 55.000 16.20 0.00 42.66 3.53
311 329 0.112412 AAAGGCCCTCCAATCACGTT 59.888 50.000 0.00 0.00 33.74 3.99
330 348 5.235186 CACGTTGATCAAGTTTCTTCTCTGT 59.765 40.000 8.80 0.00 0.00 3.41
331 349 5.463724 ACGTTGATCAAGTTTCTTCTCTGTC 59.536 40.000 8.80 0.00 0.00 3.51
339 357 3.006752 AGTTTCTTCTCTGTCTCTGCTGG 59.993 47.826 0.00 0.00 0.00 4.85
371 389 3.979911 ACAAGCCATGTCATTCCCATTA 58.020 40.909 0.00 0.00 37.96 1.90
377 395 2.303163 TGTCATTCCCATTACGGACG 57.697 50.000 0.00 0.00 36.56 4.79
412 430 1.533033 TTGCCGAGGAGTGAGGACA 60.533 57.895 0.00 0.00 0.00 4.02
443 461 6.861572 GCCAGTTTACACCTACAATCTTTTTC 59.138 38.462 0.00 0.00 0.00 2.29
446 464 8.076178 CAGTTTACACCTACAATCTTTTTCAGG 58.924 37.037 0.00 0.00 0.00 3.86
471 489 7.650649 CAACTTATAAATAGTTGTTGCGAGC 57.349 36.000 7.39 0.00 44.63 5.03
474 492 6.816640 ACTTATAAATAGTTGTTGCGAGCAGA 59.183 34.615 0.00 0.00 0.00 4.26
493 511 4.500477 GCAGAAATTGCGTGTTTGGATATC 59.500 41.667 0.00 0.00 44.09 1.63
599 618 7.931948 GCTAGCCTTACTTATCTCAATTAACCA 59.068 37.037 2.29 0.00 0.00 3.67
632 660 1.111277 GATATGCCCAAACACCACCC 58.889 55.000 0.00 0.00 0.00 4.61
633 661 0.325203 ATATGCCCAAACACCACCCC 60.325 55.000 0.00 0.00 0.00 4.95
673 701 4.100035 TCTCAATTCATGATCTACGCACCT 59.900 41.667 0.00 0.00 37.44 4.00
674 702 5.301805 TCTCAATTCATGATCTACGCACCTA 59.698 40.000 0.00 0.00 37.44 3.08
675 703 5.912892 TCAATTCATGATCTACGCACCTAA 58.087 37.500 0.00 0.00 31.50 2.69
676 704 6.524734 TCAATTCATGATCTACGCACCTAAT 58.475 36.000 0.00 0.00 31.50 1.73
677 705 6.992123 TCAATTCATGATCTACGCACCTAATT 59.008 34.615 0.00 0.00 31.50 1.40
728 756 3.742369 CCTAAAGGAAAGAACAACGCGTA 59.258 43.478 14.46 0.00 37.39 4.42
802 830 3.500448 TGTTCTTGCTGATGGGTAACA 57.500 42.857 0.00 0.00 39.74 2.41
803 831 3.146066 TGTTCTTGCTGATGGGTAACAC 58.854 45.455 0.00 0.00 39.74 3.32
804 832 3.146066 GTTCTTGCTGATGGGTAACACA 58.854 45.455 0.00 0.00 39.74 3.72
806 834 2.371841 TCTTGCTGATGGGTAACACACT 59.628 45.455 0.00 0.00 39.74 3.55
808 836 1.003118 TGCTGATGGGTAACACACTCC 59.997 52.381 0.00 0.00 39.74 3.85
856 886 6.627087 ATGGCATGGCAGTAGTATAATAGT 57.373 37.500 27.02 2.61 0.00 2.12
857 887 6.433847 TGGCATGGCAGTAGTATAATAGTT 57.566 37.500 19.43 0.00 0.00 2.24
964 994 3.041940 CGTTCACGTGCCACCCTC 61.042 66.667 11.67 0.00 34.11 4.30
1023 1053 3.630204 GTGCTGTCACACCACGAG 58.370 61.111 0.00 0.00 42.66 4.18
1025 1055 2.131067 TGCTGTCACACCACGAGGA 61.131 57.895 5.68 0.00 38.69 3.71
1067 1097 2.358003 GCTTCTGCTGCTGACGGT 60.358 61.111 8.84 0.00 36.03 4.83
1447 1477 2.190578 GCATCGGCCAGGTAAGCT 59.809 61.111 2.24 0.00 0.00 3.74
1452 1482 1.006102 CGGCCAGGTAAGCTATCCG 60.006 63.158 2.24 0.00 0.00 4.18
1453 1483 1.745320 CGGCCAGGTAAGCTATCCGT 61.745 60.000 2.24 0.00 0.00 4.69
1454 1484 1.335145 GGCCAGGTAAGCTATCCGTA 58.665 55.000 0.00 0.00 0.00 4.02
1611 1668 1.138568 TTGTTCGGGTTGGGTTAGGA 58.861 50.000 0.00 0.00 0.00 2.94
1623 1688 2.070650 GTTAGGATCGGGCCCAGGT 61.071 63.158 24.92 11.33 0.00 4.00
1815 2216 5.551760 TGCTAGATGCTAGCTTTGTTTTC 57.448 39.130 22.53 1.92 43.37 2.29
1919 2402 6.189859 TGATTTTTCATGATTCTGTAGGGCT 58.810 36.000 0.00 0.00 0.00 5.19
1920 2403 7.345691 TGATTTTTCATGATTCTGTAGGGCTA 58.654 34.615 0.00 0.00 0.00 3.93
1922 2405 8.773033 ATTTTTCATGATTCTGTAGGGCTATT 57.227 30.769 0.00 0.00 0.00 1.73
1923 2406 9.866655 ATTTTTCATGATTCTGTAGGGCTATTA 57.133 29.630 0.00 0.00 0.00 0.98
1925 2408 8.853077 TTTCATGATTCTGTAGGGCTATTATG 57.147 34.615 0.00 0.00 0.00 1.90
1926 2409 6.950842 TCATGATTCTGTAGGGCTATTATGG 58.049 40.000 0.00 0.00 0.00 2.74
1927 2410 6.501805 TCATGATTCTGTAGGGCTATTATGGT 59.498 38.462 0.00 0.00 0.00 3.55
1928 2411 6.763715 TGATTCTGTAGGGCTATTATGGTT 57.236 37.500 0.00 0.00 0.00 3.67
1929 2412 7.149202 TGATTCTGTAGGGCTATTATGGTTT 57.851 36.000 0.00 0.00 0.00 3.27
2055 2964 4.498241 TCACATGAGATCTTCTTCCAACG 58.502 43.478 0.00 0.00 0.00 4.10
2056 2965 4.021104 TCACATGAGATCTTCTTCCAACGT 60.021 41.667 0.00 0.00 0.00 3.99
2057 2966 4.328440 CACATGAGATCTTCTTCCAACGTC 59.672 45.833 0.00 0.00 0.00 4.34
2133 3042 5.720371 ATGTGATACTCCATACTCAGAGC 57.280 43.478 0.00 0.00 33.18 4.09
2137 3046 6.207614 TGTGATACTCCATACTCAGAGCATAC 59.792 42.308 0.00 0.00 33.18 2.39
2139 3048 6.432472 TGATACTCCATACTCAGAGCATACTG 59.568 42.308 0.00 0.00 39.02 2.74
2140 3049 3.320541 ACTCCATACTCAGAGCATACTGC 59.679 47.826 0.00 0.00 45.46 4.40
2164 3094 8.440059 TGCTGTATTTTACTTTGAACGAGTATG 58.560 33.333 0.00 0.00 30.30 2.39
2165 3095 7.425595 GCTGTATTTTACTTTGAACGAGTATGC 59.574 37.037 0.00 0.00 30.30 3.14
2166 3096 8.312896 TGTATTTTACTTTGAACGAGTATGCA 57.687 30.769 0.00 0.00 30.30 3.96
2167 3097 8.941977 TGTATTTTACTTTGAACGAGTATGCAT 58.058 29.630 3.79 3.79 30.30 3.96
2168 3098 9.210426 GTATTTTACTTTGAACGAGTATGCATG 57.790 33.333 10.16 0.00 30.30 4.06
2169 3099 7.428282 TTTTACTTTGAACGAGTATGCATGA 57.572 32.000 10.16 0.00 30.30 3.07
2216 3148 7.811713 TGAAATGAGATAGCATCTAATCTGTCG 59.188 37.037 0.00 0.00 40.38 4.35
2222 3154 7.721402 AGATAGCATCTAATCTGTCGAAGTTT 58.279 34.615 0.00 0.00 38.00 2.66
2231 3163 9.314321 TCTAATCTGTCGAAGTTTTCCATTATC 57.686 33.333 0.00 0.00 0.00 1.75
2235 3167 7.561251 TCTGTCGAAGTTTTCCATTATCCATA 58.439 34.615 0.00 0.00 0.00 2.74
2236 3168 8.044309 TCTGTCGAAGTTTTCCATTATCCATAA 58.956 33.333 0.00 0.00 0.00 1.90
2237 3169 8.568676 TGTCGAAGTTTTCCATTATCCATAAA 57.431 30.769 0.00 0.00 0.00 1.40
2238 3170 9.015367 TGTCGAAGTTTTCCATTATCCATAAAA 57.985 29.630 0.00 0.00 0.00 1.52
2239 3171 9.503427 GTCGAAGTTTTCCATTATCCATAAAAG 57.497 33.333 0.00 0.00 0.00 2.27
2241 3173 7.973388 CGAAGTTTTCCATTATCCATAAAAGCA 59.027 33.333 0.00 0.00 0.00 3.91
2242 3174 9.087424 GAAGTTTTCCATTATCCATAAAAGCAC 57.913 33.333 0.00 0.00 0.00 4.40
2243 3175 7.257722 AGTTTTCCATTATCCATAAAAGCACG 58.742 34.615 0.00 0.00 0.00 5.34
2244 3176 6.767524 TTTCCATTATCCATAAAAGCACGT 57.232 33.333 0.00 0.00 0.00 4.49
2246 3178 4.819630 TCCATTATCCATAAAAGCACGTCC 59.180 41.667 0.00 0.00 0.00 4.79
2248 3180 5.505654 CCATTATCCATAAAAGCACGTCCAC 60.506 44.000 0.00 0.00 0.00 4.02
2249 3181 1.434555 TCCATAAAAGCACGTCCACG 58.565 50.000 0.00 0.00 46.33 4.94
2250 3182 0.446222 CCATAAAAGCACGTCCACGG 59.554 55.000 3.81 0.00 44.95 4.94
2251 3183 0.179200 CATAAAAGCACGTCCACGGC 60.179 55.000 3.81 4.44 44.95 5.68
2276 3265 3.591254 AAGTGGCCGGAGCGTCTTC 62.591 63.158 5.05 0.00 41.24 2.87
2284 3273 1.130561 CCGGAGCGTCTTCAAATTTCC 59.869 52.381 0.00 0.00 0.00 3.13
2285 3274 1.130561 CGGAGCGTCTTCAAATTTCCC 59.869 52.381 0.00 0.00 0.00 3.97
2286 3275 1.130561 GGAGCGTCTTCAAATTTCCCG 59.869 52.381 0.00 0.00 0.00 5.14
2287 3276 2.073816 GAGCGTCTTCAAATTTCCCGA 58.926 47.619 0.00 0.00 0.00 5.14
2288 3277 1.804748 AGCGTCTTCAAATTTCCCGAC 59.195 47.619 0.00 0.00 0.00 4.79
2289 3278 1.135774 GCGTCTTCAAATTTCCCGACC 60.136 52.381 0.00 0.00 0.00 4.79
2290 3279 1.467342 CGTCTTCAAATTTCCCGACCC 59.533 52.381 0.00 0.00 0.00 4.46
2291 3280 2.510613 GTCTTCAAATTTCCCGACCCA 58.489 47.619 0.00 0.00 0.00 4.51
2292 3281 2.888414 GTCTTCAAATTTCCCGACCCAA 59.112 45.455 0.00 0.00 0.00 4.12
2293 3282 3.319689 GTCTTCAAATTTCCCGACCCAAA 59.680 43.478 0.00 0.00 0.00 3.28
2294 3283 3.319689 TCTTCAAATTTCCCGACCCAAAC 59.680 43.478 0.00 0.00 0.00 2.93
2295 3284 2.667470 TCAAATTTCCCGACCCAAACA 58.333 42.857 0.00 0.00 0.00 2.83
2296 3285 2.625790 TCAAATTTCCCGACCCAAACAG 59.374 45.455 0.00 0.00 0.00 3.16
2297 3286 1.627864 AATTTCCCGACCCAAACAGG 58.372 50.000 0.00 0.00 37.03 4.00
2298 3287 0.898326 ATTTCCCGACCCAAACAGGC 60.898 55.000 0.00 0.00 35.39 4.85
2312 3301 5.476945 CCCAAACAGGCTAAACTAATGAAGT 59.523 40.000 0.00 0.00 36.44 3.01
2313 3302 6.657541 CCCAAACAGGCTAAACTAATGAAGTA 59.342 38.462 0.00 0.00 34.49 2.24
2314 3303 7.339466 CCCAAACAGGCTAAACTAATGAAGTAT 59.661 37.037 0.00 0.00 34.49 2.12
2315 3304 9.391006 CCAAACAGGCTAAACTAATGAAGTATA 57.609 33.333 0.00 0.00 37.50 1.47
2317 3306 8.644318 AACAGGCTAAACTAATGAAGTATACG 57.356 34.615 0.00 0.00 37.50 3.06
2318 3307 7.779073 ACAGGCTAAACTAATGAAGTATACGT 58.221 34.615 0.00 0.00 37.50 3.57
2319 3308 7.919621 ACAGGCTAAACTAATGAAGTATACGTC 59.080 37.037 11.40 11.40 37.50 4.34
2320 3309 7.381678 CAGGCTAAACTAATGAAGTATACGTCC 59.618 40.741 15.02 1.55 37.50 4.79
2321 3310 7.069085 AGGCTAAACTAATGAAGTATACGTCCA 59.931 37.037 15.02 6.81 37.50 4.02
2322 3311 7.707893 GGCTAAACTAATGAAGTATACGTCCAA 59.292 37.037 15.02 0.00 37.50 3.53
2323 3312 9.257651 GCTAAACTAATGAAGTATACGTCCAAT 57.742 33.333 15.02 1.77 37.50 3.16
2327 3316 8.658499 ACTAATGAAGTATACGTCCAATTTCC 57.342 34.615 15.02 0.00 36.36 3.13
2328 3317 8.262227 ACTAATGAAGTATACGTCCAATTTCCA 58.738 33.333 15.02 0.00 36.36 3.53
2329 3318 7.931578 AATGAAGTATACGTCCAATTTCCAA 57.068 32.000 15.02 0.00 0.00 3.53
2330 3319 7.931578 ATGAAGTATACGTCCAATTTCCAAA 57.068 32.000 15.02 0.00 0.00 3.28
2331 3320 7.747155 TGAAGTATACGTCCAATTTCCAAAA 57.253 32.000 15.02 0.00 0.00 2.44
2332 3321 8.167605 TGAAGTATACGTCCAATTTCCAAAAA 57.832 30.769 15.02 0.00 0.00 1.94
2454 5233 6.632900 GCACCTAGAAAAGAGCTATAAAGGGT 60.633 42.308 0.00 0.00 0.00 4.34
2801 5603 5.049749 TGGACATGTCGTTAACTTCATGTTG 60.050 40.000 28.70 15.85 46.77 3.33
2926 6144 6.462487 CCACTTGTTCAGTCATATATACCCGT 60.462 42.308 0.00 0.00 30.92 5.28
2927 6145 6.420903 CACTTGTTCAGTCATATATACCCGTG 59.579 42.308 0.00 0.00 30.92 4.94
2937 6155 2.613026 TATACCCGTGGTTCATGCAG 57.387 50.000 0.72 0.00 37.09 4.41
2944 6162 1.672030 TGGTTCATGCAGGTGCTCG 60.672 57.895 3.18 0.00 42.66 5.03
2963 6181 4.208746 CTCGAGTAGTACTCCCTCCATTT 58.791 47.826 21.92 0.00 42.12 2.32
3048 6269 3.325870 TGGTCGCTCATTTTAGTCTGTG 58.674 45.455 0.00 0.00 0.00 3.66
3124 6346 3.997021 AGCATACTTTGAGAAAGGTGTCG 59.003 43.478 0.00 0.00 42.82 4.35
3126 6348 1.594331 ACTTTGAGAAAGGTGTCGCC 58.406 50.000 0.00 0.00 42.82 5.54
3137 6359 0.889186 GGTGTCGCCAACTTGATGGT 60.889 55.000 0.00 0.00 42.75 3.55
3191 6413 7.224753 AGCATGTCTTAATTATTGTCCAGTACG 59.775 37.037 0.00 0.00 0.00 3.67
3192 6414 7.011109 GCATGTCTTAATTATTGTCCAGTACGT 59.989 37.037 0.00 0.00 0.00 3.57
3193 6415 7.821595 TGTCTTAATTATTGTCCAGTACGTG 57.178 36.000 0.00 0.00 0.00 4.49
3194 6416 7.380536 TGTCTTAATTATTGTCCAGTACGTGT 58.619 34.615 0.00 0.00 0.00 4.49
3195 6417 8.522003 TGTCTTAATTATTGTCCAGTACGTGTA 58.478 33.333 0.00 0.00 0.00 2.90
3196 6418 9.525409 GTCTTAATTATTGTCCAGTACGTGTAT 57.475 33.333 0.00 0.00 0.00 2.29
3198 6420 9.745880 CTTAATTATTGTCCAGTACGTGTATCT 57.254 33.333 0.00 0.00 0.00 1.98
3204 6426 8.865420 ATTGTCCAGTACGTGTATCTATATCT 57.135 34.615 0.00 0.00 0.00 1.98
3206 6428 9.955102 TTGTCCAGTACGTGTATCTATATCTAT 57.045 33.333 0.00 0.00 0.00 1.98
3744 7361 3.834799 GGGCCTCGACGGGTACAG 61.835 72.222 0.84 0.00 0.00 2.74
3747 7364 2.967397 CCTCGACGGGTACAGCAA 59.033 61.111 0.00 0.00 0.00 3.91
3782 7413 1.358877 TCGATTGGAAGTCACATGCG 58.641 50.000 0.00 0.00 0.00 4.73
3783 7414 0.374758 CGATTGGAAGTCACATGCGG 59.625 55.000 0.00 0.00 0.00 5.69
3785 7416 0.327924 ATTGGAAGTCACATGCGGGA 59.672 50.000 0.00 0.00 0.00 5.14
3786 7417 0.605319 TTGGAAGTCACATGCGGGAC 60.605 55.000 0.00 0.00 0.00 4.46
3812 7446 2.177531 GGTCGTCTTCACGCGCTA 59.822 61.111 5.73 0.00 46.28 4.26
3815 7449 1.154282 TCGTCTTCACGCGCTACTG 60.154 57.895 5.73 0.00 46.28 2.74
3838 7479 1.745653 GCCATGGTCTACTCTTTTGGC 59.254 52.381 14.67 0.00 41.09 4.52
3846 7487 2.157738 CTACTCTTTTGGCTGCTTGCT 58.842 47.619 0.00 0.00 42.39 3.91
3963 7604 3.195698 CGCTCAAGGCCGGTAAGC 61.196 66.667 1.90 11.11 37.74 3.09
3994 7651 6.198650 TGGATTTGCATTGTATTCAGTGAG 57.801 37.500 0.00 0.00 33.95 3.51
4035 7692 3.503748 CCACTTTCCTGACCTGTCAATTC 59.496 47.826 1.14 0.00 39.39 2.17
4036 7693 4.392940 CACTTTCCTGACCTGTCAATTCT 58.607 43.478 1.14 0.00 39.39 2.40
4037 7694 5.513094 CCACTTTCCTGACCTGTCAATTCTA 60.513 44.000 1.14 0.00 39.39 2.10
4038 7695 5.409826 CACTTTCCTGACCTGTCAATTCTAC 59.590 44.000 1.14 0.00 39.39 2.59
4040 7697 5.407407 TTCCTGACCTGTCAATTCTACTC 57.593 43.478 1.14 0.00 39.39 2.59
4041 7698 4.678256 TCCTGACCTGTCAATTCTACTCT 58.322 43.478 1.14 0.00 39.39 3.24
4042 7699 4.464244 TCCTGACCTGTCAATTCTACTCTG 59.536 45.833 1.14 0.00 39.39 3.35
4043 7700 4.382470 CCTGACCTGTCAATTCTACTCTGG 60.382 50.000 1.14 0.00 39.39 3.86
4044 7701 3.055819 TGACCTGTCAATTCTACTCTGGC 60.056 47.826 0.00 0.00 36.53 4.85
4045 7702 3.177228 ACCTGTCAATTCTACTCTGGCT 58.823 45.455 0.00 0.00 0.00 4.75
4046 7703 3.584848 ACCTGTCAATTCTACTCTGGCTT 59.415 43.478 0.00 0.00 0.00 4.35
4047 7704 4.187694 CCTGTCAATTCTACTCTGGCTTC 58.812 47.826 0.00 0.00 0.00 3.86
4048 7705 4.081198 CCTGTCAATTCTACTCTGGCTTCT 60.081 45.833 0.00 0.00 0.00 2.85
4049 7706 5.127845 CCTGTCAATTCTACTCTGGCTTCTA 59.872 44.000 0.00 0.00 0.00 2.10
4050 7707 6.183360 CCTGTCAATTCTACTCTGGCTTCTAT 60.183 42.308 0.00 0.00 0.00 1.98
4051 7708 6.577103 TGTCAATTCTACTCTGGCTTCTATG 58.423 40.000 0.00 0.00 0.00 2.23
4052 7709 6.155221 TGTCAATTCTACTCTGGCTTCTATGT 59.845 38.462 0.00 0.00 0.00 2.29
4053 7710 7.342026 TGTCAATTCTACTCTGGCTTCTATGTA 59.658 37.037 0.00 0.00 0.00 2.29
4054 7711 7.650104 GTCAATTCTACTCTGGCTTCTATGTAC 59.350 40.741 0.00 0.00 0.00 2.90
4055 7712 7.561722 TCAATTCTACTCTGGCTTCTATGTACT 59.438 37.037 0.00 0.00 0.00 2.73
4056 7713 8.851145 CAATTCTACTCTGGCTTCTATGTACTA 58.149 37.037 0.00 0.00 0.00 1.82
4057 7714 7.804843 TTCTACTCTGGCTTCTATGTACTAC 57.195 40.000 0.00 0.00 0.00 2.73
4058 7715 6.896883 TCTACTCTGGCTTCTATGTACTACA 58.103 40.000 0.00 0.00 0.00 2.74
4059 7716 7.344134 TCTACTCTGGCTTCTATGTACTACAA 58.656 38.462 0.00 0.00 0.00 2.41
4060 7717 6.458232 ACTCTGGCTTCTATGTACTACAAG 57.542 41.667 0.00 0.00 0.00 3.16
4061 7718 6.188407 ACTCTGGCTTCTATGTACTACAAGA 58.812 40.000 0.00 0.00 0.00 3.02
4062 7719 6.836527 ACTCTGGCTTCTATGTACTACAAGAT 59.163 38.462 0.00 0.00 0.00 2.40
4063 7720 7.999545 ACTCTGGCTTCTATGTACTACAAGATA 59.000 37.037 0.00 0.00 0.00 1.98
4064 7721 8.167605 TCTGGCTTCTATGTACTACAAGATAC 57.832 38.462 0.00 0.00 0.00 2.24
4065 7722 7.999545 TCTGGCTTCTATGTACTACAAGATACT 59.000 37.037 0.00 0.00 0.00 2.12
4066 7723 9.286170 CTGGCTTCTATGTACTACAAGATACTA 57.714 37.037 0.00 0.00 0.00 1.82
4067 7724 9.286170 TGGCTTCTATGTACTACAAGATACTAG 57.714 37.037 0.00 0.00 0.00 2.57
4068 7725 9.287373 GGCTTCTATGTACTACAAGATACTAGT 57.713 37.037 0.00 0.00 0.00 2.57
4089 7746 9.571816 ACTAGTAGTTCACTATAGTATTGGACC 57.428 37.037 4.74 0.00 39.06 4.46
4090 7747 7.836479 AGTAGTTCACTATAGTATTGGACCC 57.164 40.000 4.74 0.00 34.98 4.46
4091 7748 6.781507 AGTAGTTCACTATAGTATTGGACCCC 59.218 42.308 4.74 0.00 34.98 4.95
4092 7749 4.587684 AGTTCACTATAGTATTGGACCCCG 59.412 45.833 4.74 0.00 0.00 5.73
4093 7750 3.503365 TCACTATAGTATTGGACCCCGG 58.497 50.000 4.74 0.00 0.00 5.73
4094 7751 3.117016 TCACTATAGTATTGGACCCCGGT 60.117 47.826 4.74 0.00 0.00 5.28
4095 7752 4.106179 TCACTATAGTATTGGACCCCGGTA 59.894 45.833 4.74 0.00 0.00 4.02
4096 7753 4.219288 CACTATAGTATTGGACCCCGGTAC 59.781 50.000 4.74 0.00 0.00 3.34
4115 7772 5.371629 GGTACGAGTTCATTCTTCAAAACG 58.628 41.667 0.00 0.00 0.00 3.60
4116 7773 5.176223 GGTACGAGTTCATTCTTCAAAACGA 59.824 40.000 0.00 0.00 0.00 3.85
4117 7774 5.924475 ACGAGTTCATTCTTCAAAACGAT 57.076 34.783 0.00 0.00 0.00 3.73
4118 7775 7.062605 GGTACGAGTTCATTCTTCAAAACGATA 59.937 37.037 0.00 0.00 0.00 2.92
4119 7776 7.050281 ACGAGTTCATTCTTCAAAACGATAG 57.950 36.000 0.00 0.00 46.19 2.08
4136 7793 5.561199 CGATAGTGACGTGGATAATTGTG 57.439 43.478 0.00 0.00 0.00 3.33
4137 7794 5.041287 CGATAGTGACGTGGATAATTGTGT 58.959 41.667 0.00 0.00 0.00 3.72
4138 7795 5.518847 CGATAGTGACGTGGATAATTGTGTT 59.481 40.000 0.00 0.00 0.00 3.32
4139 7796 6.035650 CGATAGTGACGTGGATAATTGTGTTT 59.964 38.462 0.00 0.00 0.00 2.83
4140 7797 5.356882 AGTGACGTGGATAATTGTGTTTG 57.643 39.130 0.00 0.00 0.00 2.93
4141 7798 4.819630 AGTGACGTGGATAATTGTGTTTGT 59.180 37.500 0.00 0.00 0.00 2.83
4142 7799 4.909305 GTGACGTGGATAATTGTGTTTGTG 59.091 41.667 0.00 0.00 0.00 3.33
4143 7800 3.896122 ACGTGGATAATTGTGTTTGTGC 58.104 40.909 0.00 0.00 0.00 4.57
4144 7801 2.908009 CGTGGATAATTGTGTTTGTGCG 59.092 45.455 0.00 0.00 0.00 5.34
4145 7802 3.608241 CGTGGATAATTGTGTTTGTGCGT 60.608 43.478 0.00 0.00 0.00 5.24
4146 7803 4.377533 CGTGGATAATTGTGTTTGTGCGTA 60.378 41.667 0.00 0.00 0.00 4.42
4147 7804 5.636837 GTGGATAATTGTGTTTGTGCGTAT 58.363 37.500 0.00 0.00 0.00 3.06
4148 7805 5.737290 GTGGATAATTGTGTTTGTGCGTATC 59.263 40.000 0.00 0.00 0.00 2.24
4149 7806 5.412904 TGGATAATTGTGTTTGTGCGTATCA 59.587 36.000 0.00 0.00 0.00 2.15
4150 7807 5.737290 GGATAATTGTGTTTGTGCGTATCAC 59.263 40.000 0.00 0.00 45.82 3.06
4151 7808 3.552604 ATTGTGTTTGTGCGTATCACC 57.447 42.857 0.00 0.00 45.03 4.02
4359 8019 4.087892 CACCCCGGAGCACAGGAG 62.088 72.222 0.73 0.00 33.26 3.69
4411 8071 0.894184 TCCTCCTCAAGAACGACGCT 60.894 55.000 0.00 0.00 0.00 5.07
4573 8233 1.376037 CAAGGACGCCAGGTTCCTC 60.376 63.158 11.31 0.00 0.00 3.71
4658 8318 1.748122 TCGGACTACGTGCTCCTCC 60.748 63.158 0.00 0.00 44.69 4.30
4666 8326 2.060383 CGTGCTCCTCCTCATGGGA 61.060 63.158 0.00 0.00 42.77 4.37
5047 8707 1.683629 CGCTTCTACCAGGGAGAGACT 60.684 57.143 0.18 0.00 0.00 3.24
5154 8826 1.610554 GGCCTGAGCACAATGCCATT 61.611 55.000 16.25 0.00 46.52 3.16
5203 8878 2.754946 ACCACGTCGAACATATTGGT 57.245 45.000 0.00 0.00 32.35 3.67
5233 8908 2.947532 CGAGCAGCTCAGGTTCCCA 61.948 63.158 22.49 0.00 0.00 4.37
5371 9046 2.360852 CAGCACCTCAAGGCAGGG 60.361 66.667 0.00 0.00 37.96 4.45
5410 9085 3.342377 TTTGATATCAGCCCGTGTGAA 57.658 42.857 5.39 0.00 0.00 3.18
5439 9114 1.225704 GGGTGAGGAAGGATGGCAG 59.774 63.158 0.00 0.00 0.00 4.85
5458 9133 1.203187 AGCAAGGTGGTAGACAGAGGA 60.203 52.381 0.00 0.00 0.00 3.71
5500 9175 4.375272 ACAAGCATGAGATGGAGATTACG 58.625 43.478 0.00 0.00 0.00 3.18
5513 9188 3.858238 GGAGATTACGTTCGAGGTTTGAG 59.142 47.826 0.00 0.00 0.00 3.02
5516 9191 2.806608 TACGTTCGAGGTTTGAGCTT 57.193 45.000 0.00 0.00 0.00 3.74
5518 9193 3.102052 ACGTTCGAGGTTTGAGCTTTA 57.898 42.857 0.00 0.00 0.00 1.85
5532 9208 8.178313 GGTTTGAGCTTTACTAGATTGATTGAC 58.822 37.037 0.00 0.00 0.00 3.18
5578 9254 5.546499 GGATACATAGAGTGTAATTCCCCCA 59.454 44.000 0.00 0.00 45.87 4.96
5579 9255 6.215636 GGATACATAGAGTGTAATTCCCCCAT 59.784 42.308 0.00 0.00 45.87 4.00
5581 9257 5.694995 ACATAGAGTGTAATTCCCCCATTG 58.305 41.667 0.00 0.00 39.91 2.82
5582 9258 5.193728 ACATAGAGTGTAATTCCCCCATTGT 59.806 40.000 0.00 0.00 39.91 2.71
5583 9259 6.388689 ACATAGAGTGTAATTCCCCCATTGTA 59.611 38.462 0.00 0.00 39.91 2.41
5585 9261 4.788617 AGAGTGTAATTCCCCCATTGTAGT 59.211 41.667 0.00 0.00 0.00 2.73
5586 9262 5.968167 AGAGTGTAATTCCCCCATTGTAGTA 59.032 40.000 0.00 0.00 0.00 1.82
5587 9263 5.997843 AGTGTAATTCCCCCATTGTAGTAC 58.002 41.667 0.00 0.00 0.00 2.73
5597 9273 7.804147 TCCCCCATTGTAGTACGTATAATTTT 58.196 34.615 0.00 0.00 0.00 1.82
5618 9294 7.712264 TTTTTATTTGCATTGGAGTGAGTTG 57.288 32.000 0.00 0.00 0.00 3.16
5663 9339 2.766263 TGTAAGGGATGATGAGTTCGCT 59.234 45.455 0.00 0.00 36.79 4.93
5672 9352 2.028658 TGATGAGTTCGCTGCTTCTTCT 60.029 45.455 0.00 0.00 0.00 2.85
5707 9393 7.693969 AGATCAATCTAGTCCAACAAAAAGG 57.306 36.000 0.00 0.00 34.85 3.11
5714 9400 2.365293 AGTCCAACAAAAAGGCATGTCC 59.635 45.455 0.00 0.00 0.00 4.02
5730 9417 4.499696 GCATGTCCTTTTTCCCCAATATCG 60.500 45.833 0.00 0.00 0.00 2.92
5739 9426 2.689658 TCCCCAATATCGTCCAGATGT 58.310 47.619 0.00 0.00 40.40 3.06
5746 9433 5.349817 CCAATATCGTCCAGATGTAGAATGC 59.650 44.000 0.00 0.00 40.40 3.56
5819 9523 4.755123 CCAGACTTGTACCAAACTAACAGG 59.245 45.833 0.00 0.00 0.00 4.00
5820 9524 4.755123 CAGACTTGTACCAAACTAACAGGG 59.245 45.833 0.00 0.00 0.00 4.45
5830 9534 1.276622 ACTAACAGGGGTGCACCTAG 58.723 55.000 33.91 26.89 39.34 3.02
5833 9537 0.110486 AACAGGGGTGCACCTAGTTG 59.890 55.000 33.91 25.76 39.34 3.16
5834 9538 0.766674 ACAGGGGTGCACCTAGTTGA 60.767 55.000 33.91 0.00 39.34 3.18
5835 9539 0.321653 CAGGGGTGCACCTAGTTGAC 60.322 60.000 33.91 16.09 39.34 3.18
5836 9540 1.002502 GGGGTGCACCTAGTTGACC 60.003 63.158 33.91 21.11 40.03 4.02
5837 9541 1.758592 GGGTGCACCTAGTTGACCA 59.241 57.895 33.91 0.00 35.85 4.02
5838 9542 0.328258 GGGTGCACCTAGTTGACCAT 59.672 55.000 33.91 0.00 35.85 3.55
5839 9543 1.271926 GGGTGCACCTAGTTGACCATT 60.272 52.381 33.91 0.00 35.85 3.16
5861 9572 9.965824 CCATTTAGTTTGTGAAATACAGAACTT 57.034 29.630 0.00 0.00 41.10 2.66
5892 9694 2.365293 GAGAGGGCAAAACACCAATTGT 59.635 45.455 4.43 0.00 41.74 2.71
6011 9816 0.602106 CTCCATATCCGCCTGCAGTG 60.602 60.000 13.81 5.37 0.00 3.66
6016 9821 2.665008 TATCCGCCTGCAGTGCATCC 62.665 60.000 20.10 11.47 38.13 3.51
6084 9903 1.160137 CACCAAGCTGGCTCAAGTAC 58.840 55.000 0.00 0.00 42.67 2.73
6086 9905 1.142870 ACCAAGCTGGCTCAAGTACAA 59.857 47.619 0.00 0.00 42.67 2.41
6132 9951 4.568072 TTATTCTTTAGGTCTGGCTGCA 57.432 40.909 0.50 0.00 0.00 4.41
6208 10027 7.012704 AGACCATTACATATGTTGAGAATGTGC 59.987 37.037 14.77 10.74 35.54 4.57
6304 10123 1.603456 TCAGTTTGCCTTTCATCGCA 58.397 45.000 0.00 0.00 0.00 5.10
6448 10267 4.592942 TCTGCTGCCTTGAATCAACTAAT 58.407 39.130 0.00 0.00 0.00 1.73
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 6.945636 TGTAGGAGGGTTTCTAATGAAAGA 57.054 37.500 0.00 0.00 42.15 2.52
20 21 7.291566 TGTTTGTAGGAGGGTTTCTAATGAAA 58.708 34.615 0.00 0.00 39.59 2.69
24 25 6.246163 CCTTGTTTGTAGGAGGGTTTCTAAT 58.754 40.000 0.00 0.00 34.56 1.73
26 27 4.042435 CCCTTGTTTGTAGGAGGGTTTCTA 59.958 45.833 0.00 0.00 43.18 2.10
39 40 5.014123 TCAGGATGTCTTATCCCTTGTTTGT 59.986 40.000 2.44 0.00 38.98 2.83
41 42 5.779241 TCAGGATGTCTTATCCCTTGTTT 57.221 39.130 2.44 0.00 38.98 2.83
64 65 7.654022 ACACTAAGGAGTTTTGGAATCAAAA 57.346 32.000 0.78 0.78 46.81 2.44
82 83 5.121380 ACCGGAATAGAGAGGTACACTAA 57.879 43.478 9.46 0.00 34.83 2.24
83 84 4.785346 ACCGGAATAGAGAGGTACACTA 57.215 45.455 9.46 0.00 34.83 2.74
104 118 0.396139 AGGTGTTAGTCGCGGGGATA 60.396 55.000 6.13 0.00 0.00 2.59
139 153 2.750948 ACGGTATCCAACATCGTATGC 58.249 47.619 0.00 0.00 32.03 3.14
140 154 7.165318 CGATATTACGGTATCCAACATCGTATG 59.835 40.741 0.00 0.00 36.44 2.39
142 156 6.403527 CCGATATTACGGTATCCAACATCGTA 60.404 42.308 0.00 0.00 46.70 3.43
144 158 4.796830 CCGATATTACGGTATCCAACATCG 59.203 45.833 0.00 0.00 46.70 3.84
157 171 4.687464 GGCCCACCCGATATTACG 57.313 61.111 0.00 0.00 0.00 3.18
167 181 0.983378 AGATACACTCTGGGCCCACC 60.983 60.000 24.45 2.48 40.81 4.61
191 205 0.541863 AGATTTGACCCTTCGGCGAT 59.458 50.000 11.76 0.00 0.00 4.58
195 209 2.234908 AGACTGAGATTTGACCCTTCGG 59.765 50.000 0.00 0.00 0.00 4.30
196 210 3.601443 AGACTGAGATTTGACCCTTCG 57.399 47.619 0.00 0.00 0.00 3.79
251 269 1.531423 TTAGATAGCTACCTCGCCGG 58.469 55.000 0.00 0.00 39.35 6.13
254 272 4.654015 CTCGAATTAGATAGCTACCTCGC 58.346 47.826 11.31 0.00 33.85 5.03
278 296 0.537653 GCCTTTTAGCTCCGACTCCT 59.462 55.000 0.00 0.00 0.00 3.69
285 303 0.331616 TTGGAGGGCCTTTTAGCTCC 59.668 55.000 7.89 14.69 31.69 4.70
304 322 6.146837 CAGAGAAGAAACTTGATCAACGTGAT 59.853 38.462 3.38 0.00 40.34 3.06
311 329 6.453943 CAGAGACAGAGAAGAAACTTGATCA 58.546 40.000 0.00 0.00 0.00 2.92
330 348 3.006756 GCCGTGTAGCCAGCAGAGA 62.007 63.158 0.00 0.00 0.00 3.10
331 349 2.510238 GCCGTGTAGCCAGCAGAG 60.510 66.667 0.00 0.00 0.00 3.35
364 382 2.425143 AGACTACGTCCGTAATGGGA 57.575 50.000 0.00 0.00 38.76 4.37
371 389 1.005340 CTCGCTAAGACTACGTCCGT 58.995 55.000 0.00 0.00 32.18 4.69
377 395 1.803252 GCAAGGCCTCGCTAAGACTAC 60.803 57.143 8.93 0.00 0.00 2.73
403 421 1.845627 CTGGCCATGGTGTCCTCACT 61.846 60.000 14.67 0.00 43.41 3.41
412 430 0.777446 AGGTGTAAACTGGCCATGGT 59.223 50.000 14.67 0.00 0.00 3.55
420 438 8.076178 CCTGAAAAAGATTGTAGGTGTAAACTG 58.924 37.037 0.00 0.00 0.00 3.16
457 475 4.726416 CAATTTCTGCTCGCAACAACTAT 58.274 39.130 0.00 0.00 0.00 2.12
471 489 5.883661 AGATATCCAAACACGCAATTTCTG 58.116 37.500 0.00 0.00 0.00 3.02
474 492 7.807977 ATCTAGATATCCAAACACGCAATTT 57.192 32.000 2.53 0.00 0.00 1.82
493 511 6.369615 CCAAATGCCCACAAAAGAAAATCTAG 59.630 38.462 0.00 0.00 0.00 2.43
599 618 1.663695 CATATCCGTTTCGTGGCCTT 58.336 50.000 3.32 0.00 0.00 4.35
632 660 2.201732 AGATATGTAACTTGCGTGCGG 58.798 47.619 0.00 0.00 0.00 5.69
633 661 2.857748 TGAGATATGTAACTTGCGTGCG 59.142 45.455 0.00 0.00 0.00 5.34
703 731 4.062991 GCGTTGTTCTTTCCTTTAGGAGA 58.937 43.478 0.00 0.00 46.36 3.71
728 756 0.537143 ATGTGATGTTGCACCCGTGT 60.537 50.000 0.00 0.00 37.99 4.49
803 831 2.800881 TATGATACGCTGCTGGAGTG 57.199 50.000 8.25 8.25 38.26 3.51
804 832 2.893489 TGATATGATACGCTGCTGGAGT 59.107 45.455 0.00 0.00 0.00 3.85
806 834 4.440663 GCTATGATATGATACGCTGCTGGA 60.441 45.833 0.00 0.00 0.00 3.86
808 836 4.427312 TGCTATGATATGATACGCTGCTG 58.573 43.478 0.00 0.00 0.00 4.41
856 886 1.152989 GGGTTGCGTGTGACGTACAA 61.153 55.000 0.00 0.00 44.73 2.41
857 887 1.592131 GGGTTGCGTGTGACGTACA 60.592 57.895 0.00 0.00 44.73 2.90
934 964 1.002624 TGAACGGATGGGTCAAGGC 60.003 57.895 0.00 0.00 0.00 4.35
1030 1060 4.012895 CGTCTGTGCAACCACCGC 62.013 66.667 0.00 0.00 41.35 5.68
1067 1097 2.354188 CCAGCAACGACGACGACA 60.354 61.111 15.32 0.00 42.66 4.35
1444 1474 1.797211 GAGCGCCAGTACGGATAGCT 61.797 60.000 2.29 15.47 42.01 3.32
1447 1477 3.028130 CGAGCGCCAGTACGGATA 58.972 61.111 2.29 0.00 36.56 2.59
1611 1668 2.069776 CATGATACCTGGGCCCGAT 58.930 57.895 19.37 7.73 0.00 4.18
1623 1688 2.940561 CGCGCATGCAGCATGATA 59.059 55.556 35.16 0.00 43.81 2.15
1711 2106 5.048083 CCAAATCACGGATCAAGAAAAGGAA 60.048 40.000 0.00 0.00 0.00 3.36
1833 2234 9.819267 GGCAGAAGAGGGTAATACATTATATAC 57.181 37.037 0.00 0.00 0.00 1.47
1836 2237 7.733047 TGAGGCAGAAGAGGGTAATACATTATA 59.267 37.037 0.00 0.00 0.00 0.98
1837 2238 6.558775 TGAGGCAGAAGAGGGTAATACATTAT 59.441 38.462 0.00 0.00 0.00 1.28
1838 2239 5.903010 TGAGGCAGAAGAGGGTAATACATTA 59.097 40.000 0.00 0.00 0.00 1.90
1839 2240 4.721776 TGAGGCAGAAGAGGGTAATACATT 59.278 41.667 0.00 0.00 0.00 2.71
1842 2323 4.755266 TTGAGGCAGAAGAGGGTAATAC 57.245 45.455 0.00 0.00 0.00 1.89
1867 2348 7.466804 TCACCTGACAAGAGGGTAATATTTTT 58.533 34.615 0.00 0.00 37.45 1.94
1868 2349 7.027874 TCACCTGACAAGAGGGTAATATTTT 57.972 36.000 0.00 0.00 37.45 1.82
1870 2351 5.964477 TCTCACCTGACAAGAGGGTAATATT 59.036 40.000 0.00 0.00 37.45 1.28
1875 2356 2.992847 TCTCACCTGACAAGAGGGTA 57.007 50.000 0.00 0.00 37.45 3.69
1876 2357 1.905215 CATCTCACCTGACAAGAGGGT 59.095 52.381 0.00 0.00 37.45 4.34
2044 2953 2.059541 GTCCTTCGACGTTGGAAGAAG 58.940 52.381 23.84 16.70 42.74 2.85
2055 2964 0.599204 TTCTTGCCACGTCCTTCGAC 60.599 55.000 0.00 0.00 42.86 4.20
2056 2965 0.319555 CTTCTTGCCACGTCCTTCGA 60.320 55.000 0.00 0.00 42.86 3.71
2057 2966 0.319555 TCTTCTTGCCACGTCCTTCG 60.320 55.000 0.00 0.00 46.00 3.79
2133 3042 8.440059 TCGTTCAAAGTAAAATACAGCAGTATG 58.560 33.333 2.13 0.00 40.00 2.39
2137 3046 6.888430 ACTCGTTCAAAGTAAAATACAGCAG 58.112 36.000 0.00 0.00 0.00 4.24
2139 3048 7.425595 GCATACTCGTTCAAAGTAAAATACAGC 59.574 37.037 0.00 0.00 33.19 4.40
2140 3049 8.440059 TGCATACTCGTTCAAAGTAAAATACAG 58.560 33.333 0.00 0.00 33.19 2.74
2181 3113 6.702716 TGCTATCTCATTTCAAATCATGCA 57.297 33.333 0.00 0.00 0.00 3.96
2194 3126 7.176515 ACTTCGACAGATTAGATGCTATCTCAT 59.823 37.037 2.47 0.00 40.76 2.90
2216 3148 9.087424 GTGCTTTTATGGATAATGGAAAACTTC 57.913 33.333 0.00 0.00 0.00 3.01
2222 3154 5.298276 GGACGTGCTTTTATGGATAATGGAA 59.702 40.000 0.00 0.00 0.00 3.53
2231 3163 0.446222 CCGTGGACGTGCTTTTATGG 59.554 55.000 8.99 0.00 37.74 2.74
2235 3167 0.949105 CTAGCCGTGGACGTGCTTTT 60.949 55.000 16.61 0.00 42.61 2.27
2236 3168 1.374252 CTAGCCGTGGACGTGCTTT 60.374 57.895 16.61 1.76 42.61 3.51
2237 3169 2.261671 CTAGCCGTGGACGTGCTT 59.738 61.111 16.61 5.63 42.61 3.91
2238 3170 3.760035 CCTAGCCGTGGACGTGCT 61.760 66.667 8.99 15.96 44.03 4.40
2239 3171 2.216750 TTACCTAGCCGTGGACGTGC 62.217 60.000 0.00 0.00 37.74 5.34
2241 3173 0.529378 CTTTACCTAGCCGTGGACGT 59.471 55.000 0.00 0.00 37.74 4.34
2242 3174 0.529378 ACTTTACCTAGCCGTGGACG 59.471 55.000 0.00 0.00 39.44 4.79
2243 3175 1.405121 CCACTTTACCTAGCCGTGGAC 60.405 57.143 0.00 0.00 46.11 4.02
2244 3176 0.899720 CCACTTTACCTAGCCGTGGA 59.100 55.000 0.00 0.00 46.11 4.02
2246 3178 0.743345 GGCCACTTTACCTAGCCGTG 60.743 60.000 0.00 0.00 33.18 4.94
2248 3180 4.534401 GGCCACTTTACCTAGCCG 57.466 61.111 0.00 0.00 33.18 5.52
2249 3181 1.153229 CCGGCCACTTTACCTAGCC 60.153 63.158 2.24 0.00 40.33 3.93
2250 3182 0.179081 CTCCGGCCACTTTACCTAGC 60.179 60.000 2.24 0.00 0.00 3.42
2251 3183 0.179081 GCTCCGGCCACTTTACCTAG 60.179 60.000 2.24 0.00 0.00 3.02
2276 3265 2.288763 CCTGTTTGGGTCGGGAAATTTG 60.289 50.000 0.00 0.00 33.49 2.32
2284 3273 0.879090 GTTTAGCCTGTTTGGGTCGG 59.121 55.000 0.00 0.00 44.42 4.79
2285 3274 1.892209 AGTTTAGCCTGTTTGGGTCG 58.108 50.000 0.00 0.00 44.42 4.79
2286 3275 5.007682 TCATTAGTTTAGCCTGTTTGGGTC 58.992 41.667 0.00 0.00 44.42 4.46
2287 3276 6.919321 ACTTCATTAGTTTAGCCTGTTTGGGT 60.919 38.462 0.00 0.00 41.44 4.51
2288 3277 5.476945 ACTTCATTAGTTTAGCCTGTTTGGG 59.523 40.000 0.00 0.00 31.29 4.12
2289 3278 6.575162 ACTTCATTAGTTTAGCCTGTTTGG 57.425 37.500 0.00 0.00 31.29 3.28
2291 3280 9.095065 CGTATACTTCATTAGTTTAGCCTGTTT 57.905 33.333 0.56 0.00 38.33 2.83
2292 3281 8.255905 ACGTATACTTCATTAGTTTAGCCTGTT 58.744 33.333 0.56 0.00 38.33 3.16
2293 3282 7.779073 ACGTATACTTCATTAGTTTAGCCTGT 58.221 34.615 0.56 0.00 38.33 4.00
2294 3283 7.381678 GGACGTATACTTCATTAGTTTAGCCTG 59.618 40.741 11.11 0.00 38.33 4.85
2295 3284 7.069085 TGGACGTATACTTCATTAGTTTAGCCT 59.931 37.037 11.11 0.00 38.33 4.58
2296 3285 7.205297 TGGACGTATACTTCATTAGTTTAGCC 58.795 38.462 11.11 0.00 38.33 3.93
2297 3286 8.638685 TTGGACGTATACTTCATTAGTTTAGC 57.361 34.615 11.11 0.00 38.33 3.09
2342 3331 9.847224 AGGAATTTGATAATTTGGACGTATACT 57.153 29.630 0.56 0.00 34.16 2.12
2380 3369 1.588239 TGTCCTACGGTCTCTAGGGA 58.412 55.000 0.00 0.00 32.79 4.20
2381 3370 2.426381 GTTTGTCCTACGGTCTCTAGGG 59.574 54.545 0.00 0.00 32.79 3.53
2384 3373 2.490903 GCAGTTTGTCCTACGGTCTCTA 59.509 50.000 0.00 0.00 0.00 2.43
2385 3374 1.272769 GCAGTTTGTCCTACGGTCTCT 59.727 52.381 0.00 0.00 0.00 3.10
2387 3376 0.320697 GGCAGTTTGTCCTACGGTCT 59.679 55.000 0.00 0.00 0.00 3.85
2388 3377 1.012486 CGGCAGTTTGTCCTACGGTC 61.012 60.000 0.00 0.00 0.00 4.79
2392 3387 0.865769 CACACGGCAGTTTGTCCTAC 59.134 55.000 0.00 0.00 0.00 3.18
2450 3446 0.826256 TGTACTCACGTGCTGACCCT 60.826 55.000 11.67 0.00 0.00 4.34
2481 5260 0.541063 TCTCCCTGTCGTTGGCACTA 60.541 55.000 0.00 0.00 0.00 2.74
2801 5603 7.153315 GCCTAACATATAGTTGGTAGAACTCC 58.847 42.308 0.72 0.00 38.89 3.85
2879 5682 4.278419 GGTGCTTGACTGAACAAACCTAAT 59.722 41.667 0.00 0.00 31.68 1.73
2926 6144 1.672030 CGAGCACCTGCATGAACCA 60.672 57.895 0.00 0.00 45.16 3.67
2927 6145 1.364626 CTCGAGCACCTGCATGAACC 61.365 60.000 0.00 0.00 45.16 3.62
2937 6155 1.023502 GGGAGTACTACTCGAGCACC 58.976 60.000 13.61 3.60 45.96 5.01
2944 6162 4.205587 TCGAAATGGAGGGAGTACTACTC 58.794 47.826 15.38 15.38 44.32 2.59
3009 6230 4.032672 CGACCAAACACACTAAAACACGTA 59.967 41.667 0.00 0.00 0.00 3.57
3012 6233 3.103007 GCGACCAAACACACTAAAACAC 58.897 45.455 0.00 0.00 0.00 3.32
3029 6250 2.736721 TGCACAGACTAAAATGAGCGAC 59.263 45.455 0.00 0.00 36.03 5.19
3124 6346 1.203052 CATGGTGACCATCAAGTTGGC 59.797 52.381 15.48 0.00 43.15 4.52
3126 6348 1.887854 TGCATGGTGACCATCAAGTTG 59.112 47.619 15.48 5.11 43.15 3.16
3133 6355 1.206132 CTTGCATTGCATGGTGACCAT 59.794 47.619 12.20 12.20 46.37 3.55
3137 6359 2.102757 ACAAACTTGCATTGCATGGTGA 59.897 40.909 24.53 8.15 38.76 4.02
3203 6425 9.379791 AGGTAACGTGAAAAGGAAAAGATATAG 57.620 33.333 0.00 0.00 46.39 1.31
3204 6426 9.729281 AAGGTAACGTGAAAAGGAAAAGATATA 57.271 29.630 0.00 0.00 46.39 0.86
3206 6428 8.454570 AAAGGTAACGTGAAAAGGAAAAGATA 57.545 30.769 0.00 0.00 46.39 1.98
3207 6429 6.954487 AAGGTAACGTGAAAAGGAAAAGAT 57.046 33.333 0.00 0.00 46.39 2.40
3208 6430 6.762702 AAAGGTAACGTGAAAAGGAAAAGA 57.237 33.333 0.00 0.00 46.39 2.52
3209 6431 8.964150 CAATAAAGGTAACGTGAAAAGGAAAAG 58.036 33.333 0.00 0.00 46.39 2.27
3223 6774 4.521256 TGGGCAGTGAACAATAAAGGTAAC 59.479 41.667 0.00 0.00 0.00 2.50
3754 7385 5.802956 TGTGACTTCCAATCGAAACAAAAAC 59.197 36.000 0.00 0.00 0.00 2.43
3786 7417 3.966026 GAAGACGACCGCACTCCCG 62.966 68.421 0.00 0.00 0.00 5.14
3812 7446 2.756907 AGAGTAGACCATGGCATCAGT 58.243 47.619 13.04 0.00 0.00 3.41
3815 7449 3.629398 CCAAAAGAGTAGACCATGGCATC 59.371 47.826 13.04 2.38 0.00 3.91
3838 7479 4.318021 ACGCACGCAAGCAAGCAG 62.318 61.111 6.54 2.67 45.62 4.24
3846 7487 3.342627 GTACCTGCACGCACGCAA 61.343 61.111 0.00 0.00 42.45 4.85
3983 7640 2.947852 AGTCGTGTGCTCACTGAATAC 58.052 47.619 16.23 7.08 41.89 1.89
3985 7642 3.660501 TTAGTCGTGTGCTCACTGAAT 57.339 42.857 16.23 15.16 41.89 2.57
3994 7651 3.064207 TGGATGAGTTTTAGTCGTGTGC 58.936 45.455 0.00 0.00 0.00 4.57
4035 7692 7.499563 TCTTGTAGTACATAGAAGCCAGAGTAG 59.500 40.741 3.28 0.00 35.28 2.57
4036 7693 7.344134 TCTTGTAGTACATAGAAGCCAGAGTA 58.656 38.462 3.28 0.00 35.28 2.59
4037 7694 6.188407 TCTTGTAGTACATAGAAGCCAGAGT 58.812 40.000 3.28 0.00 35.28 3.24
4038 7695 6.701145 TCTTGTAGTACATAGAAGCCAGAG 57.299 41.667 3.28 0.00 35.28 3.35
4040 7697 8.172352 AGTATCTTGTAGTACATAGAAGCCAG 57.828 38.462 3.28 0.00 35.28 4.85
4041 7698 9.286170 CTAGTATCTTGTAGTACATAGAAGCCA 57.714 37.037 3.28 0.00 35.28 4.75
4042 7699 9.287373 ACTAGTATCTTGTAGTACATAGAAGCC 57.713 37.037 3.28 3.61 35.28 4.35
4063 7720 9.571816 GGTCCAATACTATAGTGAACTACTAGT 57.428 37.037 15.90 0.00 44.69 2.57
4064 7721 9.012161 GGGTCCAATACTATAGTGAACTACTAG 57.988 40.741 15.90 0.00 44.69 2.57
4065 7722 7.946776 GGGGTCCAATACTATAGTGAACTACTA 59.053 40.741 15.90 0.00 45.50 1.82
4066 7723 6.781507 GGGGTCCAATACTATAGTGAACTACT 59.218 42.308 15.90 0.00 43.56 2.57
4067 7724 6.294397 CGGGGTCCAATACTATAGTGAACTAC 60.294 46.154 15.90 8.03 0.00 2.73
4068 7725 5.771666 CGGGGTCCAATACTATAGTGAACTA 59.228 44.000 15.90 0.00 0.00 2.24
4069 7726 4.587684 CGGGGTCCAATACTATAGTGAACT 59.412 45.833 15.90 0.00 0.00 3.01
4070 7727 4.262335 CCGGGGTCCAATACTATAGTGAAC 60.262 50.000 15.90 6.55 0.00 3.18
4071 7728 3.899360 CCGGGGTCCAATACTATAGTGAA 59.101 47.826 15.90 0.00 0.00 3.18
4072 7729 3.117016 ACCGGGGTCCAATACTATAGTGA 60.117 47.826 15.90 1.02 0.00 3.41
4073 7730 3.236896 ACCGGGGTCCAATACTATAGTG 58.763 50.000 15.90 0.00 0.00 2.74
4074 7731 3.625252 ACCGGGGTCCAATACTATAGT 57.375 47.619 10.87 10.87 0.00 2.12
4075 7732 3.441572 CGTACCGGGGTCCAATACTATAG 59.558 52.174 6.32 0.00 0.00 1.31
4076 7733 3.073798 TCGTACCGGGGTCCAATACTATA 59.926 47.826 6.32 0.00 0.00 1.31
4077 7734 2.158475 TCGTACCGGGGTCCAATACTAT 60.158 50.000 6.32 0.00 0.00 2.12
4078 7735 1.214175 TCGTACCGGGGTCCAATACTA 59.786 52.381 6.32 0.00 0.00 1.82
4079 7736 0.033208 TCGTACCGGGGTCCAATACT 60.033 55.000 6.32 0.00 0.00 2.12
4080 7737 0.386838 CTCGTACCGGGGTCCAATAC 59.613 60.000 6.32 0.00 0.00 1.89
4081 7738 0.033208 ACTCGTACCGGGGTCCAATA 60.033 55.000 6.32 0.00 0.00 1.90
4082 7739 0.906282 AACTCGTACCGGGGTCCAAT 60.906 55.000 6.32 0.00 0.00 3.16
4083 7740 1.533753 AACTCGTACCGGGGTCCAA 60.534 57.895 6.32 0.00 0.00 3.53
4084 7741 1.978617 GAACTCGTACCGGGGTCCA 60.979 63.158 6.32 0.00 38.23 4.02
4085 7742 1.325476 ATGAACTCGTACCGGGGTCC 61.325 60.000 6.32 0.00 44.30 4.46
4086 7743 0.533951 AATGAACTCGTACCGGGGTC 59.466 55.000 6.32 0.00 45.26 4.46
4087 7744 0.533951 GAATGAACTCGTACCGGGGT 59.466 55.000 6.32 0.00 0.00 4.95
4088 7745 0.822164 AGAATGAACTCGTACCGGGG 59.178 55.000 6.32 0.00 0.00 5.73
4089 7746 2.094390 TGAAGAATGAACTCGTACCGGG 60.094 50.000 6.32 0.00 0.00 5.73
4090 7747 3.226346 TGAAGAATGAACTCGTACCGG 57.774 47.619 0.00 0.00 0.00 5.28
4091 7748 5.371629 GTTTTGAAGAATGAACTCGTACCG 58.628 41.667 0.00 0.00 0.00 4.02
4092 7749 5.176223 TCGTTTTGAAGAATGAACTCGTACC 59.824 40.000 0.00 0.00 0.00 3.34
4093 7750 6.206600 TCGTTTTGAAGAATGAACTCGTAC 57.793 37.500 0.00 0.00 0.00 3.67
4094 7751 7.811236 ACTATCGTTTTGAAGAATGAACTCGTA 59.189 33.333 0.00 0.00 0.00 3.43
4095 7752 5.924475 ATCGTTTTGAAGAATGAACTCGT 57.076 34.783 0.00 0.00 0.00 4.18
4096 7753 6.950428 CACTATCGTTTTGAAGAATGAACTCG 59.050 38.462 0.00 0.00 0.00 4.18
4097 7754 7.952637 GTCACTATCGTTTTGAAGAATGAACTC 59.047 37.037 0.00 0.00 0.00 3.01
4098 7755 7.359264 CGTCACTATCGTTTTGAAGAATGAACT 60.359 37.037 0.00 0.00 0.00 3.01
4099 7756 6.732392 CGTCACTATCGTTTTGAAGAATGAAC 59.268 38.462 0.00 0.00 0.00 3.18
4100 7757 6.422701 ACGTCACTATCGTTTTGAAGAATGAA 59.577 34.615 0.00 0.00 38.38 2.57
4101 7758 5.924254 ACGTCACTATCGTTTTGAAGAATGA 59.076 36.000 0.00 0.00 38.38 2.57
4102 7759 6.009474 CACGTCACTATCGTTTTGAAGAATG 58.991 40.000 0.00 0.00 39.55 2.67
4103 7760 5.120208 CCACGTCACTATCGTTTTGAAGAAT 59.880 40.000 0.00 0.00 39.55 2.40
4104 7761 4.446385 CCACGTCACTATCGTTTTGAAGAA 59.554 41.667 0.00 0.00 39.55 2.52
4105 7762 3.985279 CCACGTCACTATCGTTTTGAAGA 59.015 43.478 0.00 0.00 39.55 2.87
4106 7763 3.985279 TCCACGTCACTATCGTTTTGAAG 59.015 43.478 0.00 0.00 39.55 3.02
4107 7764 3.979948 TCCACGTCACTATCGTTTTGAA 58.020 40.909 0.00 0.00 39.55 2.69
4108 7765 3.646611 TCCACGTCACTATCGTTTTGA 57.353 42.857 0.00 0.00 39.55 2.69
4109 7766 6.583912 ATTATCCACGTCACTATCGTTTTG 57.416 37.500 0.00 0.00 39.55 2.44
4110 7767 6.592607 ACAATTATCCACGTCACTATCGTTTT 59.407 34.615 0.00 0.00 39.55 2.43
4111 7768 6.035650 CACAATTATCCACGTCACTATCGTTT 59.964 38.462 0.00 0.00 39.55 3.60
4112 7769 5.518847 CACAATTATCCACGTCACTATCGTT 59.481 40.000 0.00 0.00 39.55 3.85
4113 7770 5.041287 CACAATTATCCACGTCACTATCGT 58.959 41.667 0.00 0.00 42.33 3.73
4114 7771 5.041287 ACACAATTATCCACGTCACTATCG 58.959 41.667 0.00 0.00 0.00 2.92
4115 7772 6.903883 AACACAATTATCCACGTCACTATC 57.096 37.500 0.00 0.00 0.00 2.08
4116 7773 6.653320 ACAAACACAATTATCCACGTCACTAT 59.347 34.615 0.00 0.00 0.00 2.12
4117 7774 5.992829 ACAAACACAATTATCCACGTCACTA 59.007 36.000 0.00 0.00 0.00 2.74
4118 7775 4.819630 ACAAACACAATTATCCACGTCACT 59.180 37.500 0.00 0.00 0.00 3.41
4119 7776 4.909305 CACAAACACAATTATCCACGTCAC 59.091 41.667 0.00 0.00 0.00 3.67
4120 7777 4.555708 GCACAAACACAATTATCCACGTCA 60.556 41.667 0.00 0.00 0.00 4.35
4121 7778 3.911964 GCACAAACACAATTATCCACGTC 59.088 43.478 0.00 0.00 0.00 4.34
4122 7779 3.608241 CGCACAAACACAATTATCCACGT 60.608 43.478 0.00 0.00 0.00 4.49
4123 7780 2.908009 CGCACAAACACAATTATCCACG 59.092 45.455 0.00 0.00 0.00 4.94
4124 7781 3.896122 ACGCACAAACACAATTATCCAC 58.104 40.909 0.00 0.00 0.00 4.02
4125 7782 5.412904 TGATACGCACAAACACAATTATCCA 59.587 36.000 0.00 0.00 0.00 3.41
4126 7783 5.737290 GTGATACGCACAAACACAATTATCC 59.263 40.000 0.00 0.00 46.91 2.59
4127 7784 6.774717 GTGATACGCACAAACACAATTATC 57.225 37.500 0.00 0.00 46.91 1.75
4140 7797 0.460284 CAGTCCTGGGTGATACGCAC 60.460 60.000 0.00 0.00 46.98 5.34
4141 7798 1.613317 CCAGTCCTGGGTGATACGCA 61.613 60.000 5.37 0.00 46.81 5.24
4142 7799 1.144057 CCAGTCCTGGGTGATACGC 59.856 63.158 5.37 0.00 46.81 4.42
4204 7861 1.676635 GATCTTGCCCTGCTGCACA 60.677 57.895 0.00 0.00 41.88 4.57
4462 8122 4.293648 GGGTTGTTGGCGTTGGGC 62.294 66.667 0.00 0.00 42.51 5.36
4563 8223 3.322466 ACCCTGCGAGGAACCTGG 61.322 66.667 0.00 0.00 37.67 4.45
4666 8326 2.926779 TCCTGCTGCTGGCTCAGT 60.927 61.111 19.55 0.00 42.39 3.41
5047 8707 2.868839 GCCGTAGCCAAACTTGTAGACA 60.869 50.000 0.00 0.00 0.00 3.41
5168 8840 3.248171 GTAGCTCGCGACGCCTTG 61.248 66.667 21.48 5.64 0.00 3.61
5233 8908 4.988716 TCCACCTCGACCACGGCT 62.989 66.667 0.00 0.00 40.21 5.52
5371 9046 0.908198 ATGTGAGTCTGGCCTTCTCC 59.092 55.000 3.32 4.52 0.00 3.71
5410 9085 3.562176 CCTTCCTCACCCTGCTAAAATGT 60.562 47.826 0.00 0.00 0.00 2.71
5439 9114 1.267121 TCCTCTGTCTACCACCTTGC 58.733 55.000 0.00 0.00 0.00 4.01
5458 9133 5.183530 TGTCAACCATGAGGAAATGAGAT 57.816 39.130 0.00 0.00 35.88 2.75
5500 9175 5.467705 TCTAGTAAAGCTCAAACCTCGAAC 58.532 41.667 0.00 0.00 0.00 3.95
5513 9188 7.076842 TGCAAGTCAATCAATCTAGTAAAGC 57.923 36.000 0.00 0.00 0.00 3.51
5516 9191 6.070251 TCCCTGCAAGTCAATCAATCTAGTAA 60.070 38.462 0.00 0.00 0.00 2.24
5518 9193 4.225942 TCCCTGCAAGTCAATCAATCTAGT 59.774 41.667 0.00 0.00 0.00 2.57
5532 9208 0.543749 CTCTACCCCTTCCCTGCAAG 59.456 60.000 0.00 0.00 0.00 4.01
5597 9273 5.769662 ACTCAACTCACTCCAATGCAAATAA 59.230 36.000 0.00 0.00 0.00 1.40
5603 9279 3.003480 GGTACTCAACTCACTCCAATGC 58.997 50.000 0.00 0.00 0.00 3.56
5610 9286 2.972348 TCCAAGGGTACTCAACTCACT 58.028 47.619 0.00 0.00 0.00 3.41
5618 9294 2.838813 AGCCTAGTTTCCAAGGGTACTC 59.161 50.000 0.00 0.00 41.72 2.59
5691 9377 4.321230 GGACATGCCTTTTTGTTGGACTAG 60.321 45.833 0.00 0.00 0.00 2.57
5707 9393 4.499696 CGATATTGGGGAAAAAGGACATGC 60.500 45.833 0.00 0.00 0.00 4.06
5714 9400 4.523083 TCTGGACGATATTGGGGAAAAAG 58.477 43.478 0.00 0.00 0.00 2.27
5730 9417 2.551459 GCATGGCATTCTACATCTGGAC 59.449 50.000 0.00 0.00 0.00 4.02
5819 9523 0.328258 ATGGTCAACTAGGTGCACCC 59.672 55.000 32.29 14.68 36.42 4.61
5820 9524 2.200373 AATGGTCAACTAGGTGCACC 57.800 50.000 29.22 29.22 0.00 5.01
5830 9534 9.180678 CTGTATTTCACAAACTAAATGGTCAAC 57.819 33.333 0.00 0.00 36.48 3.18
5833 9537 9.394477 GTTCTGTATTTCACAAACTAAATGGTC 57.606 33.333 0.00 0.00 36.48 4.02
5834 9538 9.131791 AGTTCTGTATTTCACAAACTAAATGGT 57.868 29.630 0.00 0.00 37.04 3.55
5835 9539 9.965824 AAGTTCTGTATTTCACAAACTAAATGG 57.034 29.630 0.00 0.00 37.43 3.16
5861 9572 4.591498 TGTTTTGCCCTCTCTAGTCTGTAA 59.409 41.667 0.00 0.00 0.00 2.41
5911 9713 8.201554 TGCATCAACTATGTTTCTCTATGTTC 57.798 34.615 0.00 0.00 37.93 3.18
6011 9816 3.635373 ACATGAATGATCACAAGGGATGC 59.365 43.478 0.00 0.00 38.69 3.91
6016 9821 4.157105 TCTGCAACATGAATGATCACAAGG 59.843 41.667 0.00 0.00 38.69 3.61
6059 9865 1.941999 GAGCCAGCTTGGTGCATTCC 61.942 60.000 0.00 0.00 45.94 3.01
6107 9926 6.113411 GCAGCCAGACCTAAAGAATAAACTA 58.887 40.000 0.00 0.00 0.00 2.24
6132 9951 4.165565 CCCATCCTCTGCATACATATCCAT 59.834 45.833 0.00 0.00 0.00 3.41
6208 10027 4.437239 AGGATGTCTAATCACAAGAAGCG 58.563 43.478 0.00 0.00 0.00 4.68
6304 10123 1.609783 GCAGGCAGTATTCAGGGGT 59.390 57.895 0.00 0.00 0.00 4.95
6357 10176 9.696572 TCTATACACCATTTCTAGACAAGTACT 57.303 33.333 0.00 0.00 0.00 2.73
6370 10189 7.016153 TCACAGGTTCTTCTATACACCATTT 57.984 36.000 0.00 0.00 0.00 2.32
6380 10199 5.105310 GCCTTCTGTATCACAGGTTCTTCTA 60.105 44.000 6.48 0.00 45.94 2.10
6402 10221 1.133790 GCTCATCTGTGATGGTTTGCC 59.866 52.381 7.58 0.00 32.98 4.52


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.