Multiple sequence alignment - TraesCS4B01G074000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G074000 chr4B 100.000 8445 0 0 910 9354 69312550 69320994 0.000000e+00 15596.0
1 TraesCS4B01G074000 chr4B 100.000 396 0 0 1 396 69311641 69312036 0.000000e+00 732.0
2 TraesCS4B01G074000 chr4B 88.983 118 12 1 8863 8979 536577509 536577392 2.720000e-30 145.0
3 TraesCS4B01G074000 chr4D 95.954 2620 79 21 5631 8238 47496176 47498780 0.000000e+00 4226.0
4 TraesCS4B01G074000 chr4D 93.208 2076 90 20 910 2975 47493790 47495824 0.000000e+00 3005.0
5 TraesCS4B01G074000 chr4D 87.832 641 36 19 8251 8855 47498969 47499603 0.000000e+00 713.0
6 TraesCS4B01G074000 chr4D 97.039 304 8 1 5330 5633 47495820 47496122 2.330000e-140 510.0
7 TraesCS4B01G074000 chr4D 90.102 394 30 8 9 396 47493196 47493586 3.900000e-138 503.0
8 TraesCS4B01G074000 chr4D 87.931 232 13 4 8996 9220 47499612 47499835 9.320000e-65 259.0
9 TraesCS4B01G074000 chr2A 97.658 2348 53 2 2974 5319 578392826 578390479 0.000000e+00 4030.0
10 TraesCS4B01G074000 chr2D 97.657 2347 53 2 2974 5318 106330355 106332701 0.000000e+00 4028.0
11 TraesCS4B01G074000 chr2D 97.255 2368 57 6 2974 5335 136424462 136426827 0.000000e+00 4006.0
12 TraesCS4B01G074000 chr2D 81.176 170 24 6 2363 2527 118930173 118930339 7.620000e-26 130.0
13 TraesCS4B01G074000 chr7A 97.535 2353 55 3 2974 5324 319589652 319592003 0.000000e+00 4021.0
14 TraesCS4B01G074000 chr7A 97.331 2360 59 4 2974 5330 438512543 438514901 0.000000e+00 4006.0
15 TraesCS4B01G074000 chr7A 90.351 114 10 1 8863 8975 3798838 3798951 2.100000e-31 148.0
16 TraesCS4B01G074000 chr7A 93.750 48 3 0 8331 8378 671181384 671181337 1.300000e-08 73.1
17 TraesCS4B01G074000 chr1D 97.574 2350 53 3 2974 5321 94052998 94050651 0.000000e+00 4021.0
18 TraesCS4B01G074000 chr1D 89.189 111 12 0 8863 8973 471139082 471139192 1.270000e-28 139.0
19 TraesCS4B01G074000 chr1D 82.716 162 16 10 2361 2519 482108000 482107848 5.890000e-27 134.0
20 TraesCS4B01G074000 chr6A 97.453 2356 54 4 2974 5327 58017599 58015248 0.000000e+00 4013.0
21 TraesCS4B01G074000 chr6A 97.373 2360 54 4 2974 5330 258135499 258137853 0.000000e+00 4008.0
22 TraesCS4B01G074000 chr6A 87.671 73 6 3 8302 8372 134174221 134174292 2.160000e-11 82.4
23 TraesCS4B01G074000 chr5A 97.447 2350 58 2 2974 5321 23606634 23608983 0.000000e+00 4006.0
24 TraesCS4B01G074000 chr4A 95.368 1209 43 11 7041 8238 550496448 550495242 0.000000e+00 1910.0
25 TraesCS4B01G074000 chr4A 93.906 722 35 6 963 1681 550500593 550499878 0.000000e+00 1081.0
26 TraesCS4B01G074000 chr4A 93.532 603 38 1 5631 6233 550498653 550498052 0.000000e+00 896.0
27 TraesCS4B01G074000 chr4A 96.838 506 16 0 6490 6995 550496952 550496447 0.000000e+00 846.0
28 TraesCS4B01G074000 chr4A 87.156 654 44 19 8243 8863 550495093 550494447 0.000000e+00 706.0
29 TraesCS4B01G074000 chr4A 90.982 499 30 9 1732 2227 550499534 550499048 0.000000e+00 658.0
30 TraesCS4B01G074000 chr4A 88.916 406 21 9 1 396 550501229 550500838 6.570000e-131 479.0
31 TraesCS4B01G074000 chr4A 95.307 277 10 2 6246 6521 550497258 550496984 4.010000e-118 436.0
32 TraesCS4B01G074000 chr4A 90.132 304 16 3 5330 5633 550498996 550498707 5.300000e-102 383.0
33 TraesCS4B01G074000 chr4A 89.916 119 11 1 8862 8979 682754624 682754742 1.630000e-32 152.0
34 TraesCS4B01G074000 chr4A 94.444 72 3 1 8312 8383 550494816 550494746 9.930000e-20 110.0
35 TraesCS4B01G074000 chr4A 88.525 61 5 2 8312 8372 609391920 609391978 1.300000e-08 73.1
36 TraesCS4B01G074000 chr4A 100.000 28 0 0 9000 9027 603946004 603945977 1.700000e-02 52.8
37 TraesCS4B01G074000 chr7B 84.541 207 24 2 2362 2560 241760323 241760529 2.060000e-46 198.0
38 TraesCS4B01G074000 chr2B 84.694 196 26 4 2363 2556 40287107 40287300 9.590000e-45 193.0
39 TraesCS4B01G074000 chr2B 84.184 196 27 4 2363 2556 40282658 40282851 4.460000e-43 187.0
40 TraesCS4B01G074000 chr7D 89.167 120 12 1 8863 8981 34300831 34300950 2.100000e-31 148.0
41 TraesCS4B01G074000 chr5B 88.983 118 12 1 8863 8979 14368699 14368816 2.720000e-30 145.0
42 TraesCS4B01G074000 chr5B 88.235 119 14 0 8863 8981 478502597 478502479 9.790000e-30 143.0
43 TraesCS4B01G074000 chr5D 83.333 162 15 9 2363 2519 98244690 98244536 1.270000e-28 139.0
44 TraesCS4B01G074000 chr5D 82.249 169 14 13 2362 2526 434813797 434813641 2.120000e-26 132.0
45 TraesCS4B01G074000 chr5D 81.765 170 15 13 2361 2526 238700075 238699918 2.740000e-25 128.0
46 TraesCS4B01G074000 chr5D 85.714 70 10 0 8313 8382 485358335 485358404 3.620000e-09 75.0
47 TraesCS4B01G074000 chr1B 87.603 121 14 1 8860 8979 640069778 640069898 1.270000e-28 139.0
48 TraesCS4B01G074000 chr3A 86.992 123 15 1 8860 8981 726716273 726716395 4.560000e-28 137.0
49 TraesCS4B01G074000 chr6B 76.096 251 51 9 8398 8642 217113249 217113002 1.280000e-23 122.0
50 TraesCS4B01G074000 chr6B 89.062 64 7 0 8309 8372 198379037 198379100 7.790000e-11 80.5
51 TraesCS4B01G074000 chr6D 75.494 253 51 11 8397 8642 123124111 123123863 7.680000e-21 113.0
52 TraesCS4B01G074000 chrUn 88.525 61 5 2 8312 8372 220215838 220215896 1.300000e-08 73.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G074000 chr4B 69311641 69320994 9353 False 8164.0 15596 100.0000 1 9354 2 chr4B.!!$F1 9353
1 TraesCS4B01G074000 chr4D 47493196 47499835 6639 False 1536.0 4226 92.0110 9 9220 6 chr4D.!!$F1 9211
2 TraesCS4B01G074000 chr2A 578390479 578392826 2347 True 4030.0 4030 97.6580 2974 5319 1 chr2A.!!$R1 2345
3 TraesCS4B01G074000 chr2D 106330355 106332701 2346 False 4028.0 4028 97.6570 2974 5318 1 chr2D.!!$F1 2344
4 TraesCS4B01G074000 chr2D 136424462 136426827 2365 False 4006.0 4006 97.2550 2974 5335 1 chr2D.!!$F3 2361
5 TraesCS4B01G074000 chr7A 319589652 319592003 2351 False 4021.0 4021 97.5350 2974 5324 1 chr7A.!!$F2 2350
6 TraesCS4B01G074000 chr7A 438512543 438514901 2358 False 4006.0 4006 97.3310 2974 5330 1 chr7A.!!$F3 2356
7 TraesCS4B01G074000 chr1D 94050651 94052998 2347 True 4021.0 4021 97.5740 2974 5321 1 chr1D.!!$R1 2347
8 TraesCS4B01G074000 chr6A 58015248 58017599 2351 True 4013.0 4013 97.4530 2974 5327 1 chr6A.!!$R1 2353
9 TraesCS4B01G074000 chr6A 258135499 258137853 2354 False 4008.0 4008 97.3730 2974 5330 1 chr6A.!!$F2 2356
10 TraesCS4B01G074000 chr5A 23606634 23608983 2349 False 4006.0 4006 97.4470 2974 5321 1 chr5A.!!$F1 2347
11 TraesCS4B01G074000 chr4A 550494447 550501229 6782 True 750.5 1910 92.6581 1 8863 10 chr4A.!!$R2 8862

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
189 199 0.038159 ACTCTGTACACGCAGAAGGC 60.038 55.000 0.00 0.00 43.92 4.35 F
947 957 0.659957 GCCCTGATTCATCTGAACGC 59.340 55.000 0.00 0.00 36.80 4.84 F
1707 1722 1.005924 CCCATTGGCTCTTGGGTAAGT 59.994 52.381 10.63 0.00 46.38 2.24 F
3266 3581 0.107410 GGGGATGCGGACAATGTGTA 60.107 55.000 0.00 0.00 0.00 2.90 F
3582 3897 0.033109 TGGCCAAGATCCGAGAGAGA 60.033 55.000 0.61 0.00 0.00 3.10 F
4265 4580 1.000396 GGGCCTTGGAGAAGCACAT 60.000 57.895 0.84 0.00 0.00 3.21 F
4824 5143 0.037232 GCAAGTTCTACAGGACGGCT 60.037 55.000 0.00 0.00 0.00 5.52 F
5044 5363 1.681264 GGTTTGGGCATATTTAGCGCT 59.319 47.619 17.26 17.26 44.29 5.92 F
5699 6075 5.312178 TCCAAATAGGTTTTCTTCTGAGGGA 59.688 40.000 0.00 0.00 39.02 4.20 F
6424 7581 1.266867 TGAGCCAGGTCATAGCAGCA 61.267 55.000 0.00 0.00 0.00 4.41 F
8171 9402 1.065491 ACATAATCTGCCTCGGTTGCA 60.065 47.619 0.00 0.00 37.17 4.08 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1430 1443 1.137872 CAGAGAGCAAGCTTCGGGTAT 59.862 52.381 0.00 0.0 0.0 2.73 R
2426 2739 1.069022 CGTGTGGCTTGGATCTTTGTG 60.069 52.381 0.00 0.0 0.0 3.33 R
3533 3848 0.036306 GTCCCTTTCGCCTTCCTTCA 59.964 55.000 0.00 0.0 0.0 3.02 R
4230 4545 0.322456 CCCACCACATGACGTTCCAT 60.322 55.000 0.00 0.0 0.0 3.41 R
4824 5143 0.816018 ACAACATTGCGGGTCGAACA 60.816 50.000 1.31 0.0 0.0 3.18 R
5181 5501 1.612442 ACGCACCCCTGTCCATAGT 60.612 57.895 0.00 0.0 0.0 2.12 R
5699 6075 3.059166 GCAGCATTTTGATTCGTTTGGT 58.941 40.909 0.00 0.0 0.0 3.67 R
5883 6259 5.382618 AAAGAAAGGTTGCATGTCATCTC 57.617 39.130 0.00 0.0 0.0 2.75 R
7524 8754 1.209261 TGGCATCCTTAGACGCATCAA 59.791 47.619 0.00 0.0 0.0 2.57 R
8272 9680 1.268948 GCTCCGTACATAGTTCGTCCC 60.269 57.143 0.00 0.0 0.0 4.46 R
9301 10748 3.006659 TCCTTTTGCGTTTTTCCATCG 57.993 42.857 0.00 0.0 0.0 3.84 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
129 130 0.676782 CAACCGGGGCTTACCAAGAG 60.677 60.000 6.32 0.00 42.91 2.85
149 150 7.068839 CCAAGAGATATAGGCAGACGGTATTAT 59.931 40.741 0.00 0.00 0.00 1.28
150 151 8.470805 CAAGAGATATAGGCAGACGGTATTATT 58.529 37.037 0.00 0.00 0.00 1.40
172 182 3.587095 TCGCTCCAACGATCGACT 58.413 55.556 24.34 5.28 37.09 4.18
189 199 0.038159 ACTCTGTACACGCAGAAGGC 60.038 55.000 0.00 0.00 43.92 4.35
259 269 4.654015 TGCAAATTCGCGGTTATTCTAAC 58.346 39.130 6.13 0.00 33.35 2.34
279 289 2.268298 CCGACTATTGGAACGGAACTG 58.732 52.381 0.00 0.00 46.94 3.16
289 299 2.579787 CGGAACTGCGCTCTACCG 60.580 66.667 9.73 15.02 34.77 4.02
331 341 3.008375 AGCTACTGGTCAAGAATTCAGCA 59.992 43.478 8.44 2.18 0.00 4.41
371 381 2.290323 CCAGTTGAAGACTTACAGGGGG 60.290 54.545 0.00 0.00 36.10 5.40
375 385 1.151413 TGAAGACTTACAGGGGGAGGT 59.849 52.381 0.00 0.00 0.00 3.85
384 394 4.534824 GGGGGAGGTCGATCCGGA 62.535 72.222 6.61 6.61 40.56 5.14
947 957 0.659957 GCCCTGATTCATCTGAACGC 59.340 55.000 0.00 0.00 36.80 4.84
948 958 1.745141 GCCCTGATTCATCTGAACGCT 60.745 52.381 0.00 0.00 36.80 5.07
949 959 1.938577 CCCTGATTCATCTGAACGCTG 59.061 52.381 0.00 0.00 36.80 5.18
950 960 2.419159 CCCTGATTCATCTGAACGCTGA 60.419 50.000 0.00 0.00 36.80 4.26
951 961 2.864946 CCTGATTCATCTGAACGCTGAG 59.135 50.000 0.00 0.00 36.80 3.35
952 962 3.429960 CCTGATTCATCTGAACGCTGAGA 60.430 47.826 0.00 0.00 36.80 3.27
953 963 4.370049 CTGATTCATCTGAACGCTGAGAT 58.630 43.478 0.00 0.00 36.80 2.75
954 964 4.763073 TGATTCATCTGAACGCTGAGATT 58.237 39.130 0.00 0.00 36.80 2.40
955 965 5.906073 TGATTCATCTGAACGCTGAGATTA 58.094 37.500 0.00 0.00 36.80 1.75
956 966 5.981915 TGATTCATCTGAACGCTGAGATTAG 59.018 40.000 0.00 0.00 36.80 1.73
957 967 4.991153 TCATCTGAACGCTGAGATTAGT 57.009 40.909 0.00 0.00 0.00 2.24
958 968 5.330455 TCATCTGAACGCTGAGATTAGTT 57.670 39.130 0.00 0.00 0.00 2.24
959 969 5.344066 TCATCTGAACGCTGAGATTAGTTC 58.656 41.667 0.77 0.77 42.19 3.01
960 970 3.759418 TCTGAACGCTGAGATTAGTTCG 58.241 45.455 3.29 0.00 44.07 3.95
961 971 2.259618 TGAACGCTGAGATTAGTTCGC 58.740 47.619 3.29 0.00 44.07 4.70
1003 1013 2.023414 TTCACTGTCGTTGACCCGCT 62.023 55.000 0.00 0.00 0.00 5.52
1005 1015 2.738521 CTGTCGTTGACCCGCTGG 60.739 66.667 0.00 0.00 37.80 4.85
1098 1108 4.154347 CTCTGCTCCCACCTCCGC 62.154 72.222 0.00 0.00 0.00 5.54
1161 1171 1.947456 GGGCAGAAAACGGTGATATCC 59.053 52.381 0.00 0.00 0.00 2.59
1162 1172 2.639065 GGCAGAAAACGGTGATATCCA 58.361 47.619 0.00 0.00 0.00 3.41
1176 1186 2.561467 TATCCACCTCTCCGTGCGGA 62.561 60.000 13.01 13.01 42.90 5.54
1410 1422 4.442706 TCAGACCTTCGCTTATCCAAATC 58.557 43.478 0.00 0.00 0.00 2.17
1415 1427 5.365619 ACCTTCGCTTATCCAAATCGTAAT 58.634 37.500 0.00 0.00 0.00 1.89
1416 1428 5.236478 ACCTTCGCTTATCCAAATCGTAATG 59.764 40.000 0.00 0.00 0.00 1.90
1417 1429 4.725556 TCGCTTATCCAAATCGTAATGC 57.274 40.909 0.00 0.00 0.00 3.56
1418 1430 3.496884 TCGCTTATCCAAATCGTAATGCC 59.503 43.478 0.00 0.00 0.00 4.40
1492 1505 2.534298 CTCTAACTCTGTGTCGCCATG 58.466 52.381 0.00 0.00 0.00 3.66
1493 1506 1.893137 TCTAACTCTGTGTCGCCATGT 59.107 47.619 0.00 0.00 0.00 3.21
1499 1512 3.002791 CTCTGTGTCGCCATGTAAACAT 58.997 45.455 0.00 0.00 36.96 2.71
1526 1539 4.451096 ACATTCGTAGTTAAGGTGCTTGTG 59.549 41.667 0.00 0.00 0.00 3.33
1542 1555 6.028146 TGCTTGTGCATGAATTGAATAAGT 57.972 33.333 0.00 0.00 45.31 2.24
1551 1564 7.654116 TGCATGAATTGAATAAGTGCCATAATG 59.346 33.333 0.00 0.00 0.00 1.90
1569 1582 7.310237 GCCATAATGGGATGAATTCATTAAGCT 60.310 37.037 21.57 9.74 38.19 3.74
1574 1587 6.138263 TGGGATGAATTCATTAAGCTTCCAT 58.862 36.000 21.57 0.00 36.57 3.41
1687 1702 4.037690 GCGTTTGCATATTGGATTCTCAC 58.962 43.478 0.00 0.00 42.15 3.51
1707 1722 1.005924 CCCATTGGCTCTTGGGTAAGT 59.994 52.381 10.63 0.00 46.38 2.24
1721 1736 5.333566 TGGGTAAGTTGATCCCTTCTTTT 57.666 39.130 11.87 0.00 41.58 2.27
1722 1737 5.321927 TGGGTAAGTTGATCCCTTCTTTTC 58.678 41.667 11.87 0.00 41.58 2.29
1723 1738 4.705507 GGGTAAGTTGATCCCTTCTTTTCC 59.294 45.833 0.00 1.95 38.29 3.13
1758 2066 9.703892 TGTCAAATTATATGGTTGGAAGTTTTG 57.296 29.630 0.00 0.00 0.00 2.44
1821 2132 4.854839 GTGGTATAAATGTTTGTCGTTGCC 59.145 41.667 0.00 0.00 0.00 4.52
1898 2210 3.248363 TGATTGATTTATGCCTTCGCTCG 59.752 43.478 0.00 0.00 35.36 5.03
1917 2229 2.948979 TCGAAACTGGCAAAATGAGTGT 59.051 40.909 0.00 0.00 0.00 3.55
1918 2230 3.044986 CGAAACTGGCAAAATGAGTGTG 58.955 45.455 0.00 0.00 0.00 3.82
1958 2271 6.970191 AGTATTTAGTACTTTTGGGGCATCT 58.030 36.000 0.00 0.00 40.80 2.90
1969 2282 3.833304 GGCATCTGCTTAGGCCAC 58.167 61.111 5.01 0.00 45.60 5.01
1999 2312 5.290493 TGTGGAGTATGAACACAAGAGTT 57.710 39.130 0.00 0.00 41.65 3.01
2054 2367 8.034215 TGAATTTTATGCACCAACCAATAGAAG 58.966 33.333 0.00 0.00 0.00 2.85
2077 2390 7.530426 AGCAAAAGTTTGAACTAATGGAGAT 57.470 32.000 7.96 0.00 40.55 2.75
2079 2392 7.231317 AGCAAAAGTTTGAACTAATGGAGATGA 59.769 33.333 7.96 0.00 40.55 2.92
2091 2404 4.801521 ATGGAGATGATTGGACAATCCA 57.198 40.909 19.19 12.97 46.61 3.41
2122 2435 5.084818 TCAATAGAATCGACCTGCAGAAA 57.915 39.130 17.39 0.00 0.00 2.52
2145 2458 4.024048 ACAAGTTTGCAGGTTCAGATTACG 60.024 41.667 0.00 0.00 0.00 3.18
2154 2467 4.039973 CAGGTTCAGATTACGGCCCTATAA 59.960 45.833 0.00 0.00 0.00 0.98
2238 2551 1.611977 TCTATCCGGTGGATTGCTACG 59.388 52.381 0.00 0.00 39.79 3.51
2341 2654 7.755582 AATTCACAGCCGCTTTAATTTATTC 57.244 32.000 0.00 0.00 0.00 1.75
2419 2732 1.156736 CAAACCACTAGAGCCAACGG 58.843 55.000 0.00 0.00 0.00 4.44
2425 2738 1.053424 ACTAGAGCCAACGGGTTCAA 58.947 50.000 0.00 0.00 46.11 2.69
2426 2739 1.270678 ACTAGAGCCAACGGGTTCAAC 60.271 52.381 0.00 0.00 46.11 3.18
2439 2752 3.304659 CGGGTTCAACACAAAGATCCAAG 60.305 47.826 0.00 0.00 0.00 3.61
2445 2758 1.956477 ACACAAAGATCCAAGCCACAC 59.044 47.619 0.00 0.00 0.00 3.82
2472 2787 1.446099 CACGGTAGCACACGAGCAT 60.446 57.895 0.00 0.00 36.85 3.79
2482 2797 2.796383 GCACACGAGCATAGTACAGAGG 60.796 54.545 0.00 0.00 0.00 3.69
2539 2854 5.432885 AAACTAAAAGCAACATACAGCGT 57.567 34.783 0.00 0.00 35.48 5.07
2542 2857 0.796312 AAAGCAACATACAGCGTCCG 59.204 50.000 0.00 0.00 35.48 4.79
2614 2929 3.584406 AATGTGGAGAAGAGTGAGTCG 57.416 47.619 0.00 0.00 0.00 4.18
2669 2984 9.520204 CATTTGGTATGCCTCTTTATACTTTTG 57.480 33.333 0.16 0.00 35.27 2.44
2670 2985 7.639113 TTGGTATGCCTCTTTATACTTTTGG 57.361 36.000 0.16 0.00 35.27 3.28
2694 3009 9.629878 TGGACACTAGTTTAATAAACAAAGGAA 57.370 29.630 17.00 0.00 43.79 3.36
2726 3041 7.032580 TCATATTTTATTGCCCAAGAAACACG 58.967 34.615 0.74 0.00 32.09 4.49
2739 3054 6.091713 CCCAAGAAACACGACTAAACGAATAT 59.908 38.462 0.00 0.00 37.03 1.28
2807 3122 4.887655 GGTTGGGTGGAAGGAACATAATAG 59.112 45.833 0.00 0.00 0.00 1.73
2851 3166 8.093307 TCATTCATTTGTGCTGGCTTTAAATTA 58.907 29.630 0.00 0.00 0.00 1.40
2892 3207 3.866651 AGCTTACTAGATGCACAGGTTG 58.133 45.455 0.00 0.00 0.00 3.77
2955 3270 9.231297 TCTTAATTGTCTTGCTATGCTTAGTTT 57.769 29.630 8.30 0.00 0.00 2.66
3160 3475 0.733150 GGATAAGCGTGCCAAAGTCC 59.267 55.000 0.00 0.00 0.00 3.85
3266 3581 0.107410 GGGGATGCGGACAATGTGTA 60.107 55.000 0.00 0.00 0.00 2.90
3313 3628 1.262640 GGTGGCCTCGGAGGAGTTTA 61.263 60.000 27.95 5.24 37.67 2.01
3323 3638 2.561419 CGGAGGAGTTTAGAGTGTCCAA 59.439 50.000 0.00 0.00 0.00 3.53
3402 3717 6.881602 AGGCGATTAAAGAGAAGAAAGATTGT 59.118 34.615 0.00 0.00 0.00 2.71
3440 3755 2.028112 TGGATAGGAGTGCAGACAACAC 60.028 50.000 0.00 0.00 38.35 3.32
3476 3791 2.328099 CGAAGAAGGCCGCAAAGCT 61.328 57.895 0.00 0.00 0.00 3.74
3485 3800 1.577328 GCCGCAAAGCTAGCTGTTGA 61.577 55.000 28.55 0.00 0.00 3.18
3533 3848 1.485066 CCTCTACCAACGGTTAGGCAT 59.515 52.381 8.61 0.00 37.09 4.40
3582 3897 0.033109 TGGCCAAGATCCGAGAGAGA 60.033 55.000 0.61 0.00 0.00 3.10
3665 3980 5.540337 TGAAGGACGAGGAGATTAAGCATAT 59.460 40.000 0.00 0.00 0.00 1.78
3670 3985 6.127310 GGACGAGGAGATTAAGCATATATGGT 60.127 42.308 11.64 11.64 40.78 3.55
3754 4069 2.306805 TCCTTTGATGAGACCAGCATGT 59.693 45.455 0.00 0.00 38.62 3.21
3941 4256 4.038271 ACAAGATGCCAGAAGAATGGAA 57.962 40.909 0.00 0.00 43.57 3.53
4002 4317 8.211629 GGGGATGTTCAGAGTTGTACTAATTAT 58.788 37.037 0.00 0.00 0.00 1.28
4007 4322 8.517056 TGTTCAGAGTTGTACTAATTATCGTGA 58.483 33.333 0.00 0.00 0.00 4.35
4230 4545 5.721960 GGAGAAGGCCTATGATAAGATACCA 59.278 44.000 5.16 0.00 0.00 3.25
4231 4546 6.385467 GGAGAAGGCCTATGATAAGATACCAT 59.615 42.308 5.16 0.00 0.00 3.55
4236 4551 6.069963 AGGCCTATGATAAGATACCATGGAAC 60.070 42.308 21.47 9.06 0.00 3.62
4260 4575 1.303643 GTGGTGGGCCTTGGAGAAG 60.304 63.158 4.53 0.00 35.27 2.85
4265 4580 1.000396 GGGCCTTGGAGAAGCACAT 60.000 57.895 0.84 0.00 0.00 3.21
4359 4674 1.272490 GTCGACACTGATGACTTCCCA 59.728 52.381 11.55 0.00 0.00 4.37
4474 4789 2.009051 CATGGTGTATGCTCTTTGCGA 58.991 47.619 0.00 0.00 46.63 5.10
4602 4918 2.415168 CGAGTACATGATGTGCGGTTTT 59.585 45.455 8.61 0.00 38.05 2.43
4616 4932 5.943416 TGTGCGGTTTTAGTACTACTAGGTA 59.057 40.000 0.91 0.00 31.47 3.08
4680 4999 2.640826 AGACACCTTTCGGTATTTGGGA 59.359 45.455 0.00 0.00 43.24 4.37
4824 5143 0.037232 GCAAGTTCTACAGGACGGCT 60.037 55.000 0.00 0.00 0.00 5.52
5001 5320 3.440522 GGGTAGCACCAATTGAAGAGAAC 59.559 47.826 7.12 0.00 41.02 3.01
5038 5357 4.646492 GTCTGAGATGGTTTGGGCATATTT 59.354 41.667 0.00 0.00 0.00 1.40
5044 5363 1.681264 GGTTTGGGCATATTTAGCGCT 59.319 47.619 17.26 17.26 44.29 5.92
5181 5501 5.755409 TTGGAGTATCACCAAAGAGCTAA 57.245 39.130 0.00 0.00 43.22 3.09
5336 5656 7.946655 TGTTGTTGTTGTTGTTGTAAATGAA 57.053 28.000 0.00 0.00 0.00 2.57
5694 6070 6.624423 CCACATCCAAATAGGTTTTCTTCTG 58.376 40.000 0.00 0.00 39.02 3.02
5699 6075 5.312178 TCCAAATAGGTTTTCTTCTGAGGGA 59.688 40.000 0.00 0.00 39.02 4.20
5883 6259 5.356882 TTGTAGCGGATTGAAGACAAAAG 57.643 39.130 0.00 0.00 39.54 2.27
5902 6278 5.382618 AAAGAGATGACATGCAACCTTTC 57.617 39.130 0.00 0.00 0.00 2.62
5916 6292 7.913674 TGCAACCTTTCTTTTTGTTATTTGT 57.086 28.000 0.00 0.00 0.00 2.83
6068 6444 1.341482 TGTTGGTTCCTTCTTGTGGCA 60.341 47.619 0.00 0.00 0.00 4.92
6162 6538 4.437682 TTTTGGAGTGATCACTGGTCTT 57.562 40.909 32.50 8.00 42.66 3.01
6191 6567 5.078411 TCCTGTGTAGAAGATTTCTGAGC 57.922 43.478 1.71 0.00 40.94 4.26
6291 7448 6.998258 CGAAAAGCATCTCAATGAAAAAGT 57.002 33.333 0.00 0.00 34.61 2.66
6294 7451 8.967218 CGAAAAGCATCTCAATGAAAAAGTAAA 58.033 29.630 0.00 0.00 34.61 2.01
6424 7581 1.266867 TGAGCCAGGTCATAGCAGCA 61.267 55.000 0.00 0.00 0.00 4.41
6905 8126 6.174720 TGTCCTGAGATTGAAGTACTTTGT 57.825 37.500 10.02 0.00 0.00 2.83
7004 8225 4.211125 TGCTGGTTCCAACTAAATGTGAA 58.789 39.130 0.00 0.00 0.00 3.18
7005 8226 4.278170 TGCTGGTTCCAACTAAATGTGAAG 59.722 41.667 0.00 0.00 0.00 3.02
7006 8227 4.798574 CTGGTTCCAACTAAATGTGAAGC 58.201 43.478 0.00 0.00 0.00 3.86
7007 8228 4.469657 TGGTTCCAACTAAATGTGAAGCT 58.530 39.130 0.00 0.00 0.00 3.74
7010 8231 6.719370 TGGTTCCAACTAAATGTGAAGCTAAT 59.281 34.615 0.00 0.00 0.00 1.73
7011 8232 7.029563 GGTTCCAACTAAATGTGAAGCTAATG 58.970 38.462 0.00 0.00 0.00 1.90
7012 8233 7.309194 GGTTCCAACTAAATGTGAAGCTAATGT 60.309 37.037 0.00 0.00 0.00 2.71
7013 8234 7.144722 TCCAACTAAATGTGAAGCTAATGTG 57.855 36.000 0.00 0.00 0.00 3.21
7014 8235 6.939730 TCCAACTAAATGTGAAGCTAATGTGA 59.060 34.615 0.00 0.00 0.00 3.58
7015 8236 7.023575 CCAACTAAATGTGAAGCTAATGTGAC 58.976 38.462 0.00 0.00 0.00 3.67
7016 8237 7.308529 CCAACTAAATGTGAAGCTAATGTGACA 60.309 37.037 0.00 0.00 0.00 3.58
7017 8238 7.369803 ACTAAATGTGAAGCTAATGTGACAG 57.630 36.000 0.00 0.00 0.00 3.51
7018 8239 7.161404 ACTAAATGTGAAGCTAATGTGACAGA 58.839 34.615 0.00 0.00 0.00 3.41
7019 8240 6.882610 AAATGTGAAGCTAATGTGACAGAA 57.117 33.333 0.00 0.00 0.00 3.02
7052 8273 3.417101 TCCACATGTACCATTCAACACC 58.583 45.455 0.00 0.00 0.00 4.16
7073 8295 4.766404 CCAAACTGGGTAATGTTGAGTC 57.234 45.455 0.00 0.00 32.67 3.36
7154 8376 5.239306 CCACTTCAAGATTAGCAGTGTTTCA 59.761 40.000 0.00 0.00 34.25 2.69
7174 8398 3.006430 TCAATCTGGTACTCGCAGTTTCA 59.994 43.478 0.00 0.00 0.00 2.69
7190 8414 5.277974 GCAGTTTCATCCATATGCATAACGT 60.278 40.000 11.13 0.00 33.92 3.99
7235 8459 6.927936 CACTATGTGGATGACTTAATCTCCAG 59.072 42.308 0.00 0.00 36.13 3.86
7293 8520 3.181487 TGAGCACAACTTTCTTGCTTTCC 60.181 43.478 0.00 0.00 46.62 3.13
7340 8568 3.311322 TCAGTGTGTTAAAAAGGCACTCG 59.689 43.478 0.00 0.00 38.49 4.18
7413 8641 9.674068 TTGCAGTCTGGTATTTTGTATTATGTA 57.326 29.630 1.14 0.00 0.00 2.29
7513 8743 1.468520 GAAACTAGCTCGGCAATTGCA 59.531 47.619 30.32 11.40 44.36 4.08
7524 8754 2.801679 CGGCAATTGCACTGATTTGTTT 59.198 40.909 30.32 0.00 44.36 2.83
7733 8963 8.800370 TGTCATGGTTTTCTATTATTACAGCA 57.200 30.769 0.00 0.00 0.00 4.41
7773 9003 9.976511 ATGATTCCTCTGCATTTGTTTATAATG 57.023 29.630 0.00 0.00 36.34 1.90
8051 9282 2.224523 TGAGCCAAATGAAACCTCGAGT 60.225 45.455 12.31 0.00 0.00 4.18
8070 9301 5.067805 TCGAGTCTTATTAGCTGCATCAAGA 59.932 40.000 1.02 2.31 0.00 3.02
8117 9348 3.113260 AGCTCATTACCGCATAAGGTC 57.887 47.619 0.00 0.00 44.68 3.85
8119 9350 2.484770 GCTCATTACCGCATAAGGTCCA 60.485 50.000 0.00 0.00 44.68 4.02
8171 9402 1.065491 ACATAATCTGCCTCGGTTGCA 60.065 47.619 0.00 0.00 37.17 4.08
8191 9422 5.303165 TGCATAGCTGAAGTAATCCATGAG 58.697 41.667 0.00 0.00 0.00 2.90
8212 9444 9.618410 CATGAGTTTAACAAATTCGAAAAACAC 57.382 29.630 18.17 13.96 30.52 3.32
8238 9470 9.627395 CTGGCACTGTAACTACTGTATAATATC 57.373 37.037 0.00 0.00 36.74 1.63
8239 9471 9.363401 TGGCACTGTAACTACTGTATAATATCT 57.637 33.333 0.00 0.00 36.74 1.98
8240 9472 9.627395 GGCACTGTAACTACTGTATAATATCTG 57.373 37.037 0.00 0.00 36.74 2.90
8249 9634 5.655488 ACTGTATAATATCTGCCTCGATGC 58.345 41.667 5.65 5.65 0.00 3.91
8263 9671 1.486310 TCGATGCCCAGCTCTTATTGT 59.514 47.619 0.00 0.00 0.00 2.71
8272 9680 3.937706 CCAGCTCTTATTGTCAACTGAGG 59.062 47.826 11.06 0.00 0.00 3.86
8273 9681 3.937706 CAGCTCTTATTGTCAACTGAGGG 59.062 47.826 11.06 1.95 0.00 4.30
8663 10104 9.797642 TGGAATAGACGGAATATAACTGTACTA 57.202 33.333 0.00 0.00 0.00 1.82
8690 10131 7.374975 ACCAATTAAGCCTGATAGCTAGTTA 57.625 36.000 0.00 0.00 44.11 2.24
8708 10149 5.982890 AGTTAGGTAAAGGCTACGTACAA 57.017 39.130 0.00 0.00 0.00 2.41
8713 10154 8.506437 GTTAGGTAAAGGCTACGTACAATTTTT 58.494 33.333 0.00 0.00 0.00 1.94
8719 10160 3.439129 GGCTACGTACAATTTTTCAGGCT 59.561 43.478 0.00 0.00 0.00 4.58
8863 10304 8.617809 GGTCTATTTTAATAAAATGTCTGGCGA 58.382 33.333 18.28 0.00 41.01 5.54
8865 10306 8.836413 TCTATTTTAATAAAATGTCTGGCGAGG 58.164 33.333 18.28 0.62 41.01 4.63
8867 10308 6.431198 TTTAATAAAATGTCTGGCGAGGAC 57.569 37.500 0.00 0.00 0.00 3.85
8868 10309 2.004583 TAAAATGTCTGGCGAGGACG 57.995 50.000 0.00 0.00 42.93 4.79
8869 10310 0.673644 AAAATGTCTGGCGAGGACGG 60.674 55.000 0.00 0.00 40.15 4.79
8870 10311 2.521958 AAATGTCTGGCGAGGACGGG 62.522 60.000 0.00 0.00 40.15 5.28
8911 10352 4.496336 CTGGGGTAGCTGCCAGCC 62.496 72.222 23.21 15.56 43.77 4.85
8914 10355 4.803908 GGGTAGCTGCCAGCCCAC 62.804 72.222 23.21 11.70 43.77 4.61
8915 10356 4.803908 GGTAGCTGCCAGCCCACC 62.804 72.222 18.98 18.98 43.77 4.61
8916 10357 4.803908 GTAGCTGCCAGCCCACCC 62.804 72.222 14.25 0.00 43.77 4.61
8933 10374 2.428622 CGGGTTCGGGTCTTGGTT 59.571 61.111 0.00 0.00 0.00 3.67
8934 10375 1.228033 CGGGTTCGGGTCTTGGTTT 60.228 57.895 0.00 0.00 0.00 3.27
8935 10376 0.820482 CGGGTTCGGGTCTTGGTTTT 60.820 55.000 0.00 0.00 0.00 2.43
8936 10377 1.542987 CGGGTTCGGGTCTTGGTTTTA 60.543 52.381 0.00 0.00 0.00 1.52
8937 10378 2.585330 GGGTTCGGGTCTTGGTTTTAA 58.415 47.619 0.00 0.00 0.00 1.52
8938 10379 2.294233 GGGTTCGGGTCTTGGTTTTAAC 59.706 50.000 0.00 0.00 0.00 2.01
8939 10380 2.031769 GGTTCGGGTCTTGGTTTTAACG 60.032 50.000 0.00 0.00 0.00 3.18
8940 10381 1.228533 TCGGGTCTTGGTTTTAACGC 58.771 50.000 0.00 0.00 0.00 4.84
8941 10382 0.945813 CGGGTCTTGGTTTTAACGCA 59.054 50.000 0.00 0.00 0.00 5.24
8942 10383 1.334329 CGGGTCTTGGTTTTAACGCAC 60.334 52.381 0.00 0.00 0.00 5.34
8943 10384 1.334329 GGGTCTTGGTTTTAACGCACG 60.334 52.381 0.00 0.00 0.00 5.34
8944 10385 1.334329 GGTCTTGGTTTTAACGCACGG 60.334 52.381 0.00 0.00 0.00 4.94
8945 10386 1.331447 GTCTTGGTTTTAACGCACGGT 59.669 47.619 0.00 0.00 0.00 4.83
8946 10387 1.331138 TCTTGGTTTTAACGCACGGTG 59.669 47.619 3.15 3.15 0.00 4.94
8947 10388 0.248539 TTGGTTTTAACGCACGGTGC 60.249 50.000 22.78 22.78 40.69 5.01
8948 10389 1.096386 TGGTTTTAACGCACGGTGCT 61.096 50.000 28.42 15.00 42.25 4.40
8949 10390 0.385098 GGTTTTAACGCACGGTGCTC 60.385 55.000 28.42 10.93 42.25 4.26
8950 10391 0.720173 GTTTTAACGCACGGTGCTCG 60.720 55.000 28.42 17.44 42.25 5.03
8951 10392 2.432841 TTTTAACGCACGGTGCTCGC 62.433 55.000 28.42 4.83 42.25 5.03
8958 10399 4.295119 ACGGTGCTCGCGGAGTTT 62.295 61.111 6.13 0.00 43.89 2.66
8959 10400 3.479269 CGGTGCTCGCGGAGTTTC 61.479 66.667 6.13 0.00 31.39 2.78
8960 10401 2.048127 GGTGCTCGCGGAGTTTCT 60.048 61.111 6.13 0.00 31.39 2.52
8961 10402 1.668151 GGTGCTCGCGGAGTTTCTT 60.668 57.895 6.13 0.00 31.39 2.52
8962 10403 1.627550 GGTGCTCGCGGAGTTTCTTC 61.628 60.000 6.13 0.00 31.39 2.87
8963 10404 0.667792 GTGCTCGCGGAGTTTCTTCT 60.668 55.000 6.13 0.00 31.39 2.85
8964 10405 0.885879 TGCTCGCGGAGTTTCTTCTA 59.114 50.000 6.13 0.00 31.39 2.10
8965 10406 1.476891 TGCTCGCGGAGTTTCTTCTAT 59.523 47.619 6.13 0.00 31.39 1.98
8966 10407 2.686405 TGCTCGCGGAGTTTCTTCTATA 59.314 45.455 6.13 0.00 31.39 1.31
8967 10408 3.129813 TGCTCGCGGAGTTTCTTCTATAA 59.870 43.478 6.13 0.00 31.39 0.98
8968 10409 4.110482 GCTCGCGGAGTTTCTTCTATAAA 58.890 43.478 6.13 0.00 31.39 1.40
8969 10410 4.565564 GCTCGCGGAGTTTCTTCTATAAAA 59.434 41.667 6.13 0.00 31.39 1.52
8970 10411 5.063060 GCTCGCGGAGTTTCTTCTATAAAAA 59.937 40.000 6.13 0.00 31.39 1.94
8993 10434 6.726258 AAAGCTAACAATAAAATGCTTGGC 57.274 33.333 0.00 0.00 40.10 4.52
8994 10435 5.404466 AGCTAACAATAAAATGCTTGGCA 57.596 34.783 0.00 0.00 44.86 4.92
9252 10699 7.478520 TTTGTTTTCAAACGGAAACAGAAAA 57.521 28.000 0.00 0.00 44.89 2.29
9253 10700 7.478520 TTGTTTTCAAACGGAAACAGAAAAA 57.521 28.000 0.00 0.00 44.89 1.94
9301 10748 6.918067 AAAGGGGGCATAATAGAAAATAGC 57.082 37.500 0.00 0.00 0.00 2.97
9302 10749 4.589908 AGGGGGCATAATAGAAAATAGCG 58.410 43.478 0.00 0.00 0.00 4.26
9303 10750 4.288626 AGGGGGCATAATAGAAAATAGCGA 59.711 41.667 0.00 0.00 0.00 4.93
9304 10751 5.044846 AGGGGGCATAATAGAAAATAGCGAT 60.045 40.000 0.00 0.00 0.00 4.58
9305 10752 5.066505 GGGGGCATAATAGAAAATAGCGATG 59.933 44.000 0.00 0.00 0.00 3.84
9306 10753 5.066505 GGGGCATAATAGAAAATAGCGATGG 59.933 44.000 0.00 0.00 0.00 3.51
9307 10754 5.880332 GGGCATAATAGAAAATAGCGATGGA 59.120 40.000 0.00 0.00 0.00 3.41
9308 10755 6.374333 GGGCATAATAGAAAATAGCGATGGAA 59.626 38.462 0.00 0.00 0.00 3.53
9309 10756 7.094377 GGGCATAATAGAAAATAGCGATGGAAA 60.094 37.037 0.00 0.00 0.00 3.13
9310 10757 8.296713 GGCATAATAGAAAATAGCGATGGAAAA 58.703 33.333 0.00 0.00 0.00 2.29
9311 10758 9.677567 GCATAATAGAAAATAGCGATGGAAAAA 57.322 29.630 0.00 0.00 0.00 1.94
9313 10760 9.878599 ATAATAGAAAATAGCGATGGAAAAACG 57.121 29.630 0.00 0.00 0.00 3.60
9321 10768 3.006659 CGATGGAAAAACGCAAAAGGA 57.993 42.857 0.00 0.00 0.00 3.36
9322 10769 3.376540 CGATGGAAAAACGCAAAAGGAA 58.623 40.909 0.00 0.00 0.00 3.36
9323 10770 3.799420 CGATGGAAAAACGCAAAAGGAAA 59.201 39.130 0.00 0.00 0.00 3.13
9324 10771 4.447389 CGATGGAAAAACGCAAAAGGAAAT 59.553 37.500 0.00 0.00 0.00 2.17
9325 10772 5.612276 CGATGGAAAAACGCAAAAGGAAATG 60.612 40.000 0.00 0.00 0.00 2.32
9326 10773 3.873952 TGGAAAAACGCAAAAGGAAATGG 59.126 39.130 0.00 0.00 0.00 3.16
9327 10774 4.123506 GGAAAAACGCAAAAGGAAATGGA 58.876 39.130 0.00 0.00 0.00 3.41
9328 10775 4.572795 GGAAAAACGCAAAAGGAAATGGAA 59.427 37.500 0.00 0.00 0.00 3.53
9329 10776 5.065346 GGAAAAACGCAAAAGGAAATGGAAA 59.935 36.000 0.00 0.00 0.00 3.13
9330 10777 6.403746 GGAAAAACGCAAAAGGAAATGGAAAA 60.404 34.615 0.00 0.00 0.00 2.29
9331 10778 6.502136 AAAACGCAAAAGGAAATGGAAAAA 57.498 29.167 0.00 0.00 0.00 1.94
9352 10799 6.699895 AAAACAACCGAAAAGAAAGAACAC 57.300 33.333 0.00 0.00 0.00 3.32
9353 10800 5.638596 AACAACCGAAAAGAAAGAACACT 57.361 34.783 0.00 0.00 0.00 3.55
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
15 16 5.294306 TGCTTTGCCTCGATTTAGATTACTG 59.706 40.000 0.00 0.00 0.00 2.74
16 17 5.294552 GTGCTTTGCCTCGATTTAGATTACT 59.705 40.000 0.00 0.00 0.00 2.24
17 18 5.064707 TGTGCTTTGCCTCGATTTAGATTAC 59.935 40.000 0.00 0.00 0.00 1.89
18 19 5.182487 TGTGCTTTGCCTCGATTTAGATTA 58.818 37.500 0.00 0.00 0.00 1.75
19 20 4.009675 TGTGCTTTGCCTCGATTTAGATT 58.990 39.130 0.00 0.00 0.00 2.40
21 22 3.002791 CTGTGCTTTGCCTCGATTTAGA 58.997 45.455 0.00 0.00 0.00 2.10
22 23 3.002791 TCTGTGCTTTGCCTCGATTTAG 58.997 45.455 0.00 0.00 0.00 1.85
23 24 3.002791 CTCTGTGCTTTGCCTCGATTTA 58.997 45.455 0.00 0.00 0.00 1.40
24 25 1.808945 CTCTGTGCTTTGCCTCGATTT 59.191 47.619 0.00 0.00 0.00 2.17
172 182 0.038251 CTGCCTTCTGCGTGTACAGA 60.038 55.000 0.00 0.00 44.84 3.41
208 218 5.513376 TGACATGCGATTCTGATAAATTGC 58.487 37.500 0.00 2.55 43.51 3.56
259 269 2.268298 CAGTTCCGTTCCAATAGTCGG 58.732 52.381 0.00 0.00 43.65 4.79
266 276 1.959226 GAGCGCAGTTCCGTTCCAA 60.959 57.895 11.47 0.00 33.19 3.53
267 277 1.529152 TAGAGCGCAGTTCCGTTCCA 61.529 55.000 11.47 0.00 39.04 3.53
279 289 2.125673 TTCTTGGCGGTAGAGCGC 60.126 61.111 17.24 17.24 38.18 5.92
310 320 3.338249 TGCTGAATTCTTGACCAGTAGC 58.662 45.455 7.05 4.48 0.00 3.58
331 341 3.260100 CAGCACCCACTCCCCCTT 61.260 66.667 0.00 0.00 0.00 3.95
371 381 0.537600 TCAGGATCCGGATCGACCTC 60.538 60.000 32.72 20.87 38.69 3.85
375 385 1.257743 GGATTCAGGATCCGGATCGA 58.742 55.000 32.72 24.04 44.73 3.59
947 957 0.876342 GGGCCGCGAACTAATCTCAG 60.876 60.000 8.23 0.00 0.00 3.35
948 958 1.143183 GGGCCGCGAACTAATCTCA 59.857 57.895 8.23 0.00 0.00 3.27
949 959 1.949631 CGGGCCGCGAACTAATCTC 60.950 63.158 15.42 0.00 0.00 2.75
950 960 2.106332 CGGGCCGCGAACTAATCT 59.894 61.111 15.42 0.00 0.00 2.40
951 961 2.965462 CCGGGCCGCGAACTAATC 60.965 66.667 23.20 0.00 0.00 1.75
973 983 3.966154 ACGACAGTGAATAATAGCTCCG 58.034 45.455 0.00 0.00 0.00 4.63
974 984 5.232414 GTCAACGACAGTGAATAATAGCTCC 59.768 44.000 0.00 0.00 32.09 4.70
1005 1015 4.409218 TGTGGCTCGTACGCGGTC 62.409 66.667 12.47 8.04 38.89 4.79
1410 1422 1.945387 ATGCTGTGAGAGGCATTACG 58.055 50.000 0.00 0.00 45.41 3.18
1415 1427 1.694150 GGGTATATGCTGTGAGAGGCA 59.306 52.381 0.00 0.00 42.80 4.75
1416 1428 1.337260 CGGGTATATGCTGTGAGAGGC 60.337 57.143 0.00 0.00 0.00 4.70
1417 1429 2.239400 TCGGGTATATGCTGTGAGAGG 58.761 52.381 0.00 0.00 0.00 3.69
1418 1430 3.858877 GCTTCGGGTATATGCTGTGAGAG 60.859 52.174 0.00 0.00 0.00 3.20
1430 1443 1.137872 CAGAGAGCAAGCTTCGGGTAT 59.862 52.381 0.00 0.00 0.00 2.73
1499 1512 7.227116 ACAAGCACCTTAACTACGAATGTTTAA 59.773 33.333 0.00 0.00 0.00 1.52
1526 1539 7.117236 CCATTATGGCACTTATTCAATTCATGC 59.883 37.037 0.00 0.00 0.00 4.06
1542 1555 7.525859 GCTTAATGAATTCATCCCATTATGGCA 60.526 37.037 20.95 0.00 33.75 4.92
1551 1564 6.661304 ATGGAAGCTTAATGAATTCATCCC 57.339 37.500 20.95 13.00 35.10 3.85
1574 1587 7.837187 CCCCTCACTAAATAGGTAATGGAAAAA 59.163 37.037 0.00 0.00 0.00 1.94
1625 1640 3.004734 AGCTGCAAATTACACAGACAACC 59.995 43.478 1.02 0.00 33.10 3.77
1626 1641 4.023707 AGAGCTGCAAATTACACAGACAAC 60.024 41.667 1.02 0.00 33.10 3.32
1707 1722 2.077803 TGGGGGAAAAGAAGGGATCAA 58.922 47.619 0.00 0.00 0.00 2.57
1721 1736 8.663209 CCATATAATTTGACAAATATGGGGGA 57.337 34.615 22.82 5.96 43.90 4.81
1758 2066 8.826765 TCTATAATCTTCCAAGATATTGGGTCC 58.173 37.037 18.79 0.00 44.67 4.46
1775 2086 6.485984 CACAAGCTGGAAATGCTCTATAATCT 59.514 38.462 0.00 0.00 40.22 2.40
1898 2210 3.181476 ACCACACTCATTTTGCCAGTTTC 60.181 43.478 0.00 0.00 0.00 2.78
1917 2229 9.127277 ACTAAATACTAGCAAAAAGTTGAACCA 57.873 29.630 0.00 0.00 36.83 3.67
1950 2263 2.203408 GGCCTAAGCAGATGCCCC 60.203 66.667 0.00 0.00 43.38 5.80
1958 2271 3.005684 CACAAAATCAAGTGGCCTAAGCA 59.994 43.478 3.32 0.00 42.56 3.91
1969 2282 6.969366 TGTGTTCATACTCCACAAAATCAAG 58.031 36.000 0.00 0.00 36.25 3.02
1999 2312 6.653526 TTCAAGAAAAGATTGCCAGATGAA 57.346 33.333 0.00 0.00 0.00 2.57
2054 2367 7.370383 TCATCTCCATTAGTTCAAACTTTTGC 58.630 34.615 0.00 0.00 40.37 3.68
2091 2404 7.011482 GCAGGTCGATTCTATTGAAGTTTATGT 59.989 37.037 0.00 0.00 35.44 2.29
2122 2435 4.024048 CGTAATCTGAACCTGCAAACTTGT 60.024 41.667 0.00 0.00 0.00 3.16
2317 2630 6.472163 CGAATAAATTAAAGCGGCTGTGAATT 59.528 34.615 1.81 7.19 0.00 2.17
2341 2654 2.004583 TTAACTGTGAAGATCCGGCG 57.995 50.000 0.00 0.00 0.00 6.46
2419 2732 3.552890 GGCTTGGATCTTTGTGTTGAACC 60.553 47.826 0.00 0.00 0.00 3.62
2425 2738 1.956477 GTGTGGCTTGGATCTTTGTGT 59.044 47.619 0.00 0.00 0.00 3.72
2426 2739 1.069022 CGTGTGGCTTGGATCTTTGTG 60.069 52.381 0.00 0.00 0.00 3.33
2439 2752 2.707039 GTGTGTGTGTCGTGTGGC 59.293 61.111 0.00 0.00 0.00 5.01
2445 2758 1.299544 TGCTACCGTGTGTGTGTCG 60.300 57.895 0.00 0.00 0.00 4.35
2472 2787 4.649674 CCCTCAGCATTAACCTCTGTACTA 59.350 45.833 0.00 0.00 0.00 1.82
2580 2895 8.611257 TCTTCTCCACATTTCCCTCTAATTTAA 58.389 33.333 0.00 0.00 0.00 1.52
2614 2929 7.542025 AGAGACAAATCTAAATGCATTTCACC 58.458 34.615 27.28 9.71 34.34 4.02
2669 2984 9.888878 GTTCCTTTGTTTATTAAACTAGTGTCC 57.111 33.333 17.70 1.73 41.90 4.02
2710 3025 1.981256 AGTCGTGTTTCTTGGGCAAT 58.019 45.000 0.00 0.00 0.00 3.56
2726 3041 7.124347 TGTGTTGGTCAATATTCGTTTAGTC 57.876 36.000 0.00 0.00 0.00 2.59
2739 3054 2.102252 GGCAGGAAAATGTGTTGGTCAA 59.898 45.455 0.00 0.00 0.00 3.18
2851 3166 9.573133 GTAAGCTACACATTGCTAATTGAATTT 57.427 29.630 0.00 0.00 38.75 1.82
2892 3207 7.108847 TCAAGAGAGAAAATTCAAGGGAGATC 58.891 38.462 0.00 0.00 0.00 2.75
2975 3290 4.002906 TGGCCACTACTAAAAGTCACAG 57.997 45.455 0.00 0.00 0.00 3.66
2976 3291 4.131596 GTTGGCCACTACTAAAAGTCACA 58.868 43.478 3.88 0.00 0.00 3.58
3127 3442 0.108520 TTATCCCGCTGGACACGAAC 60.109 55.000 0.00 0.00 45.58 3.95
3160 3475 2.931320 GCTTCCACCACTTCGTTCTAGG 60.931 54.545 0.00 0.00 0.00 3.02
3266 3581 1.065926 TGCAAGTCGCCATCTTCATCT 60.066 47.619 0.00 0.00 41.33 2.90
3313 3628 1.150135 TCTCCTTCCCTTGGACACTCT 59.850 52.381 0.00 0.00 0.00 3.24
3323 3638 1.872773 ATCTTCGCTTCTCCTTCCCT 58.127 50.000 0.00 0.00 0.00 4.20
3402 3717 2.742348 TCCAGGTATAGGCGTCTGAAA 58.258 47.619 0.00 0.00 0.00 2.69
3440 3755 3.510388 TCGCCATCTTGTACTTCTCTG 57.490 47.619 0.00 0.00 0.00 3.35
3476 3791 2.618816 CCCCTTGCTTCATCAACAGCTA 60.619 50.000 0.00 0.00 36.92 3.32
3485 3800 2.677228 CCCGACCCCTTGCTTCAT 59.323 61.111 0.00 0.00 0.00 2.57
3533 3848 0.036306 GTCCCTTTCGCCTTCCTTCA 59.964 55.000 0.00 0.00 0.00 3.02
3582 3897 1.843851 TGGCCAATATCCCTCGTCTTT 59.156 47.619 0.61 0.00 0.00 2.52
3665 3980 3.090210 TGTCGAAGTACTCCCACCATA 57.910 47.619 0.00 0.00 0.00 2.74
3670 3985 1.272490 CAGCTTGTCGAAGTACTCCCA 59.728 52.381 0.00 0.00 0.00 4.37
3754 4069 1.284408 GGATTCGCCGCACAAAACA 59.716 52.632 0.00 0.00 0.00 2.83
3941 4256 9.139734 TGAAGATTGGTACTAATATACTCCGTT 57.860 33.333 4.22 0.00 0.00 4.44
4002 4317 5.000591 TGGCTCATCAACTTAATTTCACGA 58.999 37.500 0.00 0.00 0.00 4.35
4007 4322 8.970020 TCATTGTATGGCTCATCAACTTAATTT 58.030 29.630 0.00 0.00 0.00 1.82
4230 4545 0.322456 CCCACCACATGACGTTCCAT 60.322 55.000 0.00 0.00 0.00 3.41
4231 4546 1.072332 CCCACCACATGACGTTCCA 59.928 57.895 0.00 0.00 0.00 3.53
4236 4551 2.034066 AAGGCCCACCACATGACG 59.966 61.111 0.00 0.00 39.06 4.35
4260 4575 1.826385 ACTTTGCTGGGACTATGTGC 58.174 50.000 0.00 0.00 0.00 4.57
4265 4580 4.080751 GGGTAATGTACTTTGCTGGGACTA 60.081 45.833 8.98 0.00 0.00 2.59
4359 4674 5.222007 CCCCTGATGCAGTCCTATCTTAATT 60.222 44.000 0.00 0.00 0.00 1.40
4474 4789 3.002791 CGTCAACTAGCACCACATCATT 58.997 45.455 0.00 0.00 0.00 2.57
4602 4918 6.730038 CCTCCTCCTCATACCTAGTAGTACTA 59.270 46.154 9.66 9.66 0.00 1.82
4680 4999 2.662866 CCATCCTCCTGCAACATTGAT 58.337 47.619 0.00 0.00 0.00 2.57
4824 5143 0.816018 ACAACATTGCGGGTCGAACA 60.816 50.000 1.31 0.00 0.00 3.18
5001 5320 2.029020 TCTCAGACGATGTTGGACAAGG 60.029 50.000 0.00 0.00 0.00 3.61
5044 5363 2.203983 TGGAGCTTCTGGAGGCCA 60.204 61.111 5.01 0.00 33.44 5.36
5181 5501 1.612442 ACGCACCCCTGTCCATAGT 60.612 57.895 0.00 0.00 0.00 2.12
5517 5837 7.044706 CCGCTTCAAATCGAGAAACAATAATTC 60.045 37.037 0.00 0.00 0.00 2.17
5583 5903 8.970691 TTACTTGCAGAGAAAATATCAAAAGC 57.029 30.769 3.37 0.00 0.00 3.51
5694 6070 4.485163 CATTTTGATTCGTTTGGTCCCTC 58.515 43.478 0.00 0.00 0.00 4.30
5699 6075 3.059166 GCAGCATTTTGATTCGTTTGGT 58.941 40.909 0.00 0.00 0.00 3.67
5840 6216 5.104941 ACAAAGATTCGGATGTGGTATCTCA 60.105 40.000 0.00 0.00 0.00 3.27
5883 6259 5.382618 AAAGAAAGGTTGCATGTCATCTC 57.617 39.130 0.00 0.00 0.00 2.75
5902 6278 9.919348 CTTCCACAAATGACAAATAACAAAAAG 57.081 29.630 0.00 0.00 0.00 2.27
5916 6292 6.594159 GCTAGTTAAGTAGCTTCCACAAATGA 59.406 38.462 27.84 0.00 41.99 2.57
6062 6438 8.121305 AGATAGTTTAAAAATGTCATGCCACA 57.879 30.769 0.00 0.00 0.00 4.17
6157 6533 5.916661 TCTACACAGGAGTTGATAAGACC 57.083 43.478 0.00 0.00 0.00 3.85
6162 6538 8.253810 CAGAAATCTTCTACACAGGAGTTGATA 58.746 37.037 0.00 0.00 38.11 2.15
6862 8083 6.493802 AGGACAGTGTTCTCATACTTCTGTAA 59.506 38.462 0.00 0.00 35.67 2.41
6905 8126 6.956202 TGGGTTTCTATTACGGTTTTGAAA 57.044 33.333 0.00 0.00 0.00 2.69
7052 8273 4.216257 CAGACTCAACATTACCCAGTTTGG 59.784 45.833 0.00 0.00 37.25 3.28
7073 8295 9.869844 GCACAAGCTTATTATTAATAGTGTCAG 57.130 33.333 0.00 2.95 37.91 3.51
7096 8318 8.850454 TTTTTGTTTCTAACTTACTCATGCAC 57.150 30.769 0.00 0.00 0.00 4.57
7107 8329 6.322712 TGGCACACCTATTTTTGTTTCTAACT 59.677 34.615 0.00 0.00 36.63 2.24
7154 8376 3.678056 TGAAACTGCGAGTACCAGATT 57.322 42.857 4.82 0.00 34.47 2.40
7174 8398 5.733676 TGCAGATACGTTATGCATATGGAT 58.266 37.500 14.59 14.59 44.56 3.41
7201 8425 3.146847 CATCCACATAGTGCATGCTGAT 58.853 45.455 20.33 6.49 38.29 2.90
7235 8459 9.710900 AAAATTCAGGGAAAAATACATGAACTC 57.289 29.630 0.00 0.00 30.20 3.01
7340 8568 4.329462 TGTTTGTGCAAAAGGGATAACC 57.671 40.909 0.00 0.00 40.67 2.85
7381 8609 6.639563 ACAAAATACCAGACTGCAAAAACTT 58.360 32.000 0.00 0.00 0.00 2.66
7433 8661 4.667262 TGCGGCAAATAACACATACATTC 58.333 39.130 0.00 0.00 0.00 2.67
7513 8743 4.836125 AGACGCATCAAAACAAATCAGT 57.164 36.364 0.00 0.00 0.00 3.41
7524 8754 1.209261 TGGCATCCTTAGACGCATCAA 59.791 47.619 0.00 0.00 0.00 2.57
7591 8821 4.654915 TGAATGCATCTGAGTTCCAAGAA 58.345 39.130 0.00 0.00 0.00 2.52
7671 8901 7.829211 AGCCTATGCACTTTAAGTTTGAGATAA 59.171 33.333 0.00 0.00 41.13 1.75
7683 8913 9.056005 CATACAAAATAGAGCCTATGCACTTTA 57.944 33.333 0.00 0.00 39.29 1.85
7733 8963 5.310068 AGAGGAATCATATGGAAGTGAGCAT 59.690 40.000 2.13 0.00 0.00 3.79
7801 9031 6.128526 GGTCTGTAGATAGTTGAAAGCACAAC 60.129 42.308 11.56 11.56 46.97 3.32
8051 9282 5.430886 TGCTTCTTGATGCAGCTAATAAGA 58.569 37.500 2.53 0.39 35.93 2.10
8070 9301 6.017275 CAGTCTTCTGAAGAATCAAGTTGCTT 60.017 38.462 20.86 0.00 43.76 3.91
8102 9333 5.818678 TCTATTGGACCTTATGCGGTAAT 57.181 39.130 0.00 0.00 37.42 1.89
8117 9348 4.217118 ACAACTGAAGCAGCTTTCTATTGG 59.783 41.667 9.62 0.00 34.37 3.16
8119 9350 4.457257 GGACAACTGAAGCAGCTTTCTATT 59.543 41.667 9.62 0.00 34.37 1.73
8171 9402 9.331282 GTTAAACTCATGGATTACTTCAGCTAT 57.669 33.333 0.00 0.00 0.00 2.97
8191 9422 6.897663 GCCAGTGTTTTTCGAATTTGTTAAAC 59.102 34.615 11.97 11.97 0.00 2.01
8212 9444 9.627395 GATATTATACAGTAGTTACAGTGCCAG 57.373 37.037 0.00 0.00 0.00 4.85
8238 9470 4.172512 AGCTGGGCATCGAGGCAG 62.173 66.667 24.79 14.51 46.44 4.85
8239 9471 4.166888 GAGCTGGGCATCGAGGCA 62.167 66.667 24.79 2.78 46.44 4.75
8240 9472 2.032860 TAAGAGCTGGGCATCGAGGC 62.033 60.000 14.84 14.84 43.27 4.70
8249 9634 3.937706 CTCAGTTGACAATAAGAGCTGGG 59.062 47.826 0.00 0.00 0.00 4.45
8263 9671 2.297698 TAGTTCGTCCCCTCAGTTGA 57.702 50.000 0.00 0.00 0.00 3.18
8272 9680 1.268948 GCTCCGTACATAGTTCGTCCC 60.269 57.143 0.00 0.00 0.00 4.46
8273 9681 1.268948 GGCTCCGTACATAGTTCGTCC 60.269 57.143 0.00 0.00 0.00 4.79
8388 9798 6.039415 TGAAACTGAGGGAGTATATAGGGT 57.961 41.667 0.00 0.00 33.09 4.34
8646 10059 9.760077 AATTGGTTCTAGTACAGTTATATTCCG 57.240 33.333 1.69 0.00 0.00 4.30
8663 10104 5.379706 AGCTATCAGGCTTAATTGGTTCT 57.620 39.130 0.00 0.00 39.86 3.01
8690 10131 6.711645 TGAAAAATTGTACGTAGCCTTTACCT 59.288 34.615 0.00 0.00 0.00 3.08
8816 10257 6.485313 AGACCACAAACATTTTCTTCATACGA 59.515 34.615 0.00 0.00 0.00 3.43
8897 10338 4.803908 GTGGGCTGGCAGCTACCC 62.804 72.222 35.73 28.35 41.99 3.69
8898 10339 4.803908 GGTGGGCTGGCAGCTACC 62.804 72.222 33.72 33.72 41.99 3.18
8899 10340 4.803908 GGGTGGGCTGGCAGCTAC 62.804 72.222 35.73 30.98 41.99 3.58
8916 10357 0.820482 AAAACCAAGACCCGAACCCG 60.820 55.000 0.00 0.00 0.00 5.28
8917 10358 2.275134 TAAAACCAAGACCCGAACCC 57.725 50.000 0.00 0.00 0.00 4.11
8918 10359 2.031769 CGTTAAAACCAAGACCCGAACC 60.032 50.000 0.00 0.00 0.00 3.62
8919 10360 2.602933 GCGTTAAAACCAAGACCCGAAC 60.603 50.000 0.00 0.00 0.00 3.95
8920 10361 1.603326 GCGTTAAAACCAAGACCCGAA 59.397 47.619 0.00 0.00 0.00 4.30
8921 10362 1.228533 GCGTTAAAACCAAGACCCGA 58.771 50.000 0.00 0.00 0.00 5.14
8922 10363 0.945813 TGCGTTAAAACCAAGACCCG 59.054 50.000 0.00 0.00 0.00 5.28
8923 10364 1.334329 CGTGCGTTAAAACCAAGACCC 60.334 52.381 0.00 0.00 0.00 4.46
8924 10365 1.334329 CCGTGCGTTAAAACCAAGACC 60.334 52.381 0.00 0.00 0.00 3.85
8925 10366 1.331447 ACCGTGCGTTAAAACCAAGAC 59.669 47.619 0.00 0.00 0.00 3.01
8926 10367 1.331138 CACCGTGCGTTAAAACCAAGA 59.669 47.619 0.00 0.00 0.00 3.02
8927 10368 1.749153 CACCGTGCGTTAAAACCAAG 58.251 50.000 0.00 0.00 0.00 3.61
8928 10369 0.248539 GCACCGTGCGTTAAAACCAA 60.249 50.000 7.96 0.00 31.71 3.67
8929 10370 1.355916 GCACCGTGCGTTAAAACCA 59.644 52.632 7.96 0.00 31.71 3.67
8930 10371 4.215330 GCACCGTGCGTTAAAACC 57.785 55.556 7.96 0.00 31.71 3.27
8941 10382 4.295119 AAACTCCGCGAGCACCGT 62.295 61.111 8.23 0.00 41.15 4.83
8942 10383 3.479269 GAAACTCCGCGAGCACCG 61.479 66.667 8.23 0.00 42.21 4.94
8943 10384 1.627550 GAAGAAACTCCGCGAGCACC 61.628 60.000 8.23 0.00 32.04 5.01
8944 10385 0.667792 AGAAGAAACTCCGCGAGCAC 60.668 55.000 8.23 0.00 32.04 4.40
8945 10386 0.885879 TAGAAGAAACTCCGCGAGCA 59.114 50.000 8.23 0.00 32.04 4.26
8946 10387 2.211353 ATAGAAGAAACTCCGCGAGC 57.789 50.000 8.23 0.00 32.04 5.03
8947 10388 6.642683 TTTTTATAGAAGAAACTCCGCGAG 57.357 37.500 8.23 5.77 35.52 5.03
8968 10409 7.228308 TGCCAAGCATTTTATTGTTAGCTTTTT 59.772 29.630 0.00 0.00 40.01 1.94
8969 10410 6.709846 TGCCAAGCATTTTATTGTTAGCTTTT 59.290 30.769 0.00 0.00 40.01 2.27
8970 10411 6.229733 TGCCAAGCATTTTATTGTTAGCTTT 58.770 32.000 0.00 0.00 40.01 3.51
8971 10412 5.792741 TGCCAAGCATTTTATTGTTAGCTT 58.207 33.333 0.00 0.00 42.45 3.74
8972 10413 5.404466 TGCCAAGCATTTTATTGTTAGCT 57.596 34.783 0.00 0.00 31.71 3.32
8986 10427 7.157347 TGAACATTTTTAATACATGCCAAGCA 58.843 30.769 0.00 0.00 44.86 3.91
8987 10428 7.593875 TGAACATTTTTAATACATGCCAAGC 57.406 32.000 0.00 0.00 0.00 4.01
8988 10429 8.605746 CCATGAACATTTTTAATACATGCCAAG 58.394 33.333 0.00 0.00 34.35 3.61
8989 10430 8.099537 ACCATGAACATTTTTAATACATGCCAA 58.900 29.630 0.00 0.00 34.35 4.52
8990 10431 7.548427 CACCATGAACATTTTTAATACATGCCA 59.452 33.333 0.00 0.00 34.35 4.92
8991 10432 7.548780 ACACCATGAACATTTTTAATACATGCC 59.451 33.333 0.00 0.00 34.35 4.40
8992 10433 8.477984 ACACCATGAACATTTTTAATACATGC 57.522 30.769 0.00 0.00 34.35 4.06
9051 10492 9.244799 CATGATATGTCCTTTTGATTTCACATG 57.755 33.333 0.00 0.00 0.00 3.21
9052 10493 8.974238 ACATGATATGTCCTTTTGATTTCACAT 58.026 29.630 0.00 0.00 39.92 3.21
9080 10521 6.990939 TCAAATGCATGTGGAAGAATTTTCAA 59.009 30.769 16.95 0.00 0.00 2.69
9082 10523 7.424227 TTCAAATGCATGTGGAAGAATTTTC 57.576 32.000 16.95 0.00 0.00 2.29
9220 10667 9.762062 GTTTCCGTTTGAAAACAAAACATATTT 57.238 25.926 19.11 0.00 44.30 1.40
9221 10668 8.936864 TGTTTCCGTTTGAAAACAAAACATATT 58.063 25.926 21.04 0.00 44.30 1.28
9222 10669 8.480643 TGTTTCCGTTTGAAAACAAAACATAT 57.519 26.923 21.04 0.00 44.30 1.78
9223 10670 7.813148 TCTGTTTCCGTTTGAAAACAAAACATA 59.187 29.630 23.09 17.91 44.30 2.29
9224 10671 6.647067 TCTGTTTCCGTTTGAAAACAAAACAT 59.353 30.769 23.09 0.00 44.30 2.71
9225 10672 5.983720 TCTGTTTCCGTTTGAAAACAAAACA 59.016 32.000 22.27 22.27 44.30 2.83
9226 10673 6.455045 TCTGTTTCCGTTTGAAAACAAAAC 57.545 33.333 18.10 18.10 44.30 2.43
9227 10674 7.478520 TTTCTGTTTCCGTTTGAAAACAAAA 57.521 28.000 6.72 3.77 44.30 2.44
9228 10675 7.478520 TTTTCTGTTTCCGTTTGAAAACAAA 57.521 28.000 6.72 0.00 44.30 2.83
9229 10676 7.478520 TTTTTCTGTTTCCGTTTGAAAACAA 57.521 28.000 6.72 0.00 44.30 2.83
9276 10723 7.471399 CGCTATTTTCTATTATGCCCCCTTTTT 60.471 37.037 0.00 0.00 0.00 1.94
9277 10724 6.015434 CGCTATTTTCTATTATGCCCCCTTTT 60.015 38.462 0.00 0.00 0.00 2.27
9278 10725 5.476945 CGCTATTTTCTATTATGCCCCCTTT 59.523 40.000 0.00 0.00 0.00 3.11
9279 10726 5.010282 CGCTATTTTCTATTATGCCCCCTT 58.990 41.667 0.00 0.00 0.00 3.95
9280 10727 4.288626 TCGCTATTTTCTATTATGCCCCCT 59.711 41.667 0.00 0.00 0.00 4.79
9281 10728 4.585879 TCGCTATTTTCTATTATGCCCCC 58.414 43.478 0.00 0.00 0.00 5.40
9282 10729 5.066505 CCATCGCTATTTTCTATTATGCCCC 59.933 44.000 0.00 0.00 0.00 5.80
9283 10730 5.880332 TCCATCGCTATTTTCTATTATGCCC 59.120 40.000 0.00 0.00 0.00 5.36
9284 10731 6.985188 TCCATCGCTATTTTCTATTATGCC 57.015 37.500 0.00 0.00 0.00 4.40
9285 10732 9.677567 TTTTTCCATCGCTATTTTCTATTATGC 57.322 29.630 0.00 0.00 0.00 3.14
9287 10734 9.878599 CGTTTTTCCATCGCTATTTTCTATTAT 57.121 29.630 0.00 0.00 0.00 1.28
9288 10735 7.853929 GCGTTTTTCCATCGCTATTTTCTATTA 59.146 33.333 0.00 0.00 45.29 0.98
9289 10736 6.691388 GCGTTTTTCCATCGCTATTTTCTATT 59.309 34.615 0.00 0.00 45.29 1.73
9290 10737 6.199393 GCGTTTTTCCATCGCTATTTTCTAT 58.801 36.000 0.00 0.00 45.29 1.98
9291 10738 5.565695 GCGTTTTTCCATCGCTATTTTCTA 58.434 37.500 0.00 0.00 45.29 2.10
9292 10739 4.412207 GCGTTTTTCCATCGCTATTTTCT 58.588 39.130 0.00 0.00 45.29 2.52
9293 10740 4.738528 GCGTTTTTCCATCGCTATTTTC 57.261 40.909 0.00 0.00 45.29 2.29
9301 10748 3.006659 TCCTTTTGCGTTTTTCCATCG 57.993 42.857 0.00 0.00 0.00 3.84
9302 10749 5.334028 CCATTTCCTTTTGCGTTTTTCCATC 60.334 40.000 0.00 0.00 0.00 3.51
9303 10750 4.514816 CCATTTCCTTTTGCGTTTTTCCAT 59.485 37.500 0.00 0.00 0.00 3.41
9304 10751 3.873952 CCATTTCCTTTTGCGTTTTTCCA 59.126 39.130 0.00 0.00 0.00 3.53
9305 10752 4.123506 TCCATTTCCTTTTGCGTTTTTCC 58.876 39.130 0.00 0.00 0.00 3.13
9306 10753 5.726729 TTCCATTTCCTTTTGCGTTTTTC 57.273 34.783 0.00 0.00 0.00 2.29
9307 10754 6.502136 TTTTCCATTTCCTTTTGCGTTTTT 57.498 29.167 0.00 0.00 0.00 1.94
9308 10755 6.502136 TTTTTCCATTTCCTTTTGCGTTTT 57.498 29.167 0.00 0.00 0.00 2.43
9328 10775 6.926826 AGTGTTCTTTCTTTTCGGTTGTTTTT 59.073 30.769 0.00 0.00 0.00 1.94
9329 10776 6.452242 AGTGTTCTTTCTTTTCGGTTGTTTT 58.548 32.000 0.00 0.00 0.00 2.43
9330 10777 6.020971 AGTGTTCTTTCTTTTCGGTTGTTT 57.979 33.333 0.00 0.00 0.00 2.83
9331 10778 5.638596 AGTGTTCTTTCTTTTCGGTTGTT 57.361 34.783 0.00 0.00 0.00 2.83


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.