Multiple sequence alignment - TraesCS4B01G073300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G073300 chr4B 100.000 2339 0 0 1 2339 68648701 68651039 0.000000e+00 4320.0
1 TraesCS4B01G073300 chr7B 96.008 952 29 6 620 1563 439317170 439316220 0.000000e+00 1539.0
2 TraesCS4B01G073300 chr7B 97.110 173 4 1 1 173 340634514 340634343 8.180000e-75 291.0
3 TraesCS4B01G073300 chr7B 95.954 173 7 0 1 173 209873937 209873765 4.920000e-72 281.0
4 TraesCS4B01G073300 chr6B 85.905 972 67 25 625 1556 505329031 505328090 0.000000e+00 972.0
5 TraesCS4B01G073300 chr2D 91.111 630 40 2 945 1558 628363576 628364205 0.000000e+00 839.0
6 TraesCS4B01G073300 chr2D 91.793 329 15 4 624 950 628363229 628363547 4.590000e-122 448.0
7 TraesCS4B01G073300 chr2D 95.882 170 7 0 1 170 71961127 71961296 2.290000e-70 276.0
8 TraesCS4B01G073300 chr4D 87.539 634 50 14 1585 2215 46682036 46682643 0.000000e+00 706.0
9 TraesCS4B01G073300 chr4D 90.989 455 29 7 169 619 46681590 46682036 9.250000e-169 603.0
10 TraesCS4B01G073300 chr4D 96.532 173 6 0 1 173 338958802 338958630 1.060000e-73 287.0
11 TraesCS4B01G073300 chr4D 92.857 70 3 2 2211 2279 46713061 46713129 1.480000e-17 100.0
12 TraesCS4B01G073300 chr4A 87.284 637 47 25 1558 2182 551779654 551779040 0.000000e+00 697.0
13 TraesCS4B01G073300 chr4A 87.146 459 44 6 172 628 551780088 551779643 7.460000e-140 507.0
14 TraesCS4B01G073300 chr5A 88.940 434 31 7 945 1361 338226599 338227032 9.580000e-144 520.0
15 TraesCS4B01G073300 chr5A 94.706 170 8 1 1 170 261877356 261877524 1.780000e-66 263.0
16 TraesCS4B01G073300 chr5A 88.068 176 20 1 1381 1555 362780825 362781000 8.470000e-50 207.0
17 TraesCS4B01G073300 chr5A 91.489 141 12 0 625 765 362780532 362780672 6.600000e-46 195.0
18 TraesCS4B01G073300 chr5D 88.710 434 32 7 945 1361 254827055 254827488 4.460000e-142 514.0
19 TraesCS4B01G073300 chr5D 97.059 170 5 0 1 170 117910060 117910229 1.060000e-73 287.0
20 TraesCS4B01G073300 chr5D 96.471 170 6 0 1 170 488423895 488424064 4.920000e-72 281.0
21 TraesCS4B01G073300 chr5B 88.863 431 31 7 948 1361 287800251 287799821 4.460000e-142 514.0
22 TraesCS4B01G073300 chr5B 97.059 170 5 0 1 170 450576052 450575883 1.060000e-73 287.0
23 TraesCS4B01G073300 chr5B 86.957 161 15 5 1399 1555 330122537 330122695 2.390000e-40 176.0
24 TraesCS4B01G073300 chr5B 86.957 161 15 5 1399 1555 330432094 330432252 2.390000e-40 176.0
25 TraesCS4B01G073300 chr2B 85.919 419 37 10 1150 1557 653685961 653686368 5.970000e-116 427.0
26 TraesCS4B01G073300 chr2B 93.258 178 12 0 945 1122 653684739 653684916 1.780000e-66 263.0
27 TraesCS4B01G073300 chr2B 91.720 157 12 1 621 777 653682682 653682837 1.410000e-52 217.0
28 TraesCS4B01G073300 chr3D 97.076 171 3 2 1 170 164391964 164392133 1.060000e-73 287.0
29 TraesCS4B01G073300 chr3D 100.000 28 0 0 624 651 45403046 45403019 4.000000e-03 52.8
30 TraesCS4B01G073300 chr7A 94.702 151 7 1 631 780 683613200 683613350 1.400000e-57 233.0
31 TraesCS4B01G073300 chr7A 88.068 176 20 1 1381 1555 348858190 348858365 8.470000e-50 207.0
32 TraesCS4B01G073300 chr6A 90.341 176 16 1 1381 1555 556659750 556659925 1.810000e-56 230.0
33 TraesCS4B01G073300 chr6A 93.617 141 9 0 625 765 556659435 556659575 6.550000e-51 211.0
34 TraesCS4B01G073300 chr2A 89.773 176 16 2 1381 1555 132264793 132264967 8.410000e-55 224.0
35 TraesCS4B01G073300 chr2A 91.489 47 4 0 665 711 132264573 132264619 5.400000e-07 65.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G073300 chr4B 68648701 68651039 2338 False 4320.000000 4320 100.000 1 2339 1 chr4B.!!$F1 2338
1 TraesCS4B01G073300 chr7B 439316220 439317170 950 True 1539.000000 1539 96.008 620 1563 1 chr7B.!!$R3 943
2 TraesCS4B01G073300 chr6B 505328090 505329031 941 True 972.000000 972 85.905 625 1556 1 chr6B.!!$R1 931
3 TraesCS4B01G073300 chr2D 628363229 628364205 976 False 643.500000 839 91.452 624 1558 2 chr2D.!!$F2 934
4 TraesCS4B01G073300 chr4D 46681590 46682643 1053 False 654.500000 706 89.264 169 2215 2 chr4D.!!$F2 2046
5 TraesCS4B01G073300 chr4A 551779040 551780088 1048 True 602.000000 697 87.215 172 2182 2 chr4A.!!$R1 2010
6 TraesCS4B01G073300 chr2B 653682682 653686368 3686 False 302.333333 427 90.299 621 1557 3 chr2B.!!$F1 936

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
865 1710 0.036199 TTGGTATTTGTACGCGGGCT 60.036 50.0 12.47 0.0 0.0 5.19 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1711 4521 0.028505 GTGTCTTGTGCTGTGCTGTG 59.971 55.0 0.0 0.0 0.0 3.66 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 3.872560 GTCAAAACCACCGTTGACTAG 57.127 47.619 8.83 0.00 46.57 2.57
24 25 3.200483 GTCAAAACCACCGTTGACTAGT 58.800 45.455 0.00 0.00 46.57 2.57
25 26 3.001939 GTCAAAACCACCGTTGACTAGTG 59.998 47.826 0.00 0.00 46.57 2.74
26 27 1.589803 AAACCACCGTTGACTAGTGC 58.410 50.000 0.00 0.00 30.72 4.40
27 28 0.250166 AACCACCGTTGACTAGTGCC 60.250 55.000 0.00 0.00 0.00 5.01
28 29 1.369692 CCACCGTTGACTAGTGCCA 59.630 57.895 0.00 0.00 0.00 4.92
29 30 0.949105 CCACCGTTGACTAGTGCCAC 60.949 60.000 0.00 0.00 0.00 5.01
30 31 1.006571 ACCGTTGACTAGTGCCACG 60.007 57.895 0.00 5.60 0.00 4.94
31 32 1.006571 CCGTTGACTAGTGCCACGT 60.007 57.895 0.00 0.00 0.00 4.49
32 33 1.007336 CCGTTGACTAGTGCCACGTC 61.007 60.000 0.00 0.00 0.00 4.34
33 34 0.318360 CGTTGACTAGTGCCACGTCA 60.318 55.000 0.00 1.99 36.02 4.35
34 35 1.419374 GTTGACTAGTGCCACGTCAG 58.581 55.000 0.00 0.26 38.71 3.51
35 36 0.319555 TTGACTAGTGCCACGTCAGC 60.320 55.000 0.00 0.04 38.71 4.26
36 37 1.289066 GACTAGTGCCACGTCAGCA 59.711 57.895 0.00 5.70 38.08 4.41
37 38 0.734253 GACTAGTGCCACGTCAGCAG 60.734 60.000 9.95 2.23 41.87 4.24
38 39 1.446792 CTAGTGCCACGTCAGCAGG 60.447 63.158 9.95 0.00 41.87 4.85
39 40 1.877576 CTAGTGCCACGTCAGCAGGA 61.878 60.000 9.95 1.18 41.87 3.86
40 41 1.468506 TAGTGCCACGTCAGCAGGAA 61.469 55.000 9.95 0.00 41.87 3.36
41 42 2.031012 TGCCACGTCAGCAGGAAG 59.969 61.111 5.70 0.00 34.69 3.46
42 43 2.031163 GCCACGTCAGCAGGAAGT 59.969 61.111 2.25 0.00 38.86 3.01
43 44 2.029844 GCCACGTCAGCAGGAAGTC 61.030 63.158 2.25 0.00 35.98 3.01
44 45 1.734477 CCACGTCAGCAGGAAGTCG 60.734 63.158 0.00 0.00 35.98 4.18
45 46 1.285950 CACGTCAGCAGGAAGTCGA 59.714 57.895 0.00 0.00 35.98 4.20
46 47 0.730834 CACGTCAGCAGGAAGTCGAG 60.731 60.000 0.00 0.00 35.98 4.04
47 48 0.889638 ACGTCAGCAGGAAGTCGAGA 60.890 55.000 0.00 0.00 32.45 4.04
48 49 0.179176 CGTCAGCAGGAAGTCGAGAG 60.179 60.000 0.00 0.00 0.00 3.20
49 50 1.169577 GTCAGCAGGAAGTCGAGAGA 58.830 55.000 0.00 0.00 38.16 3.10
50 51 1.542030 GTCAGCAGGAAGTCGAGAGAA 59.458 52.381 0.00 0.00 45.01 2.87
51 52 2.029828 GTCAGCAGGAAGTCGAGAGAAA 60.030 50.000 0.00 0.00 45.01 2.52
52 53 2.029828 TCAGCAGGAAGTCGAGAGAAAC 60.030 50.000 0.00 0.00 45.01 2.78
53 54 1.273886 AGCAGGAAGTCGAGAGAAACC 59.726 52.381 0.00 0.00 45.01 3.27
54 55 1.000955 GCAGGAAGTCGAGAGAAACCA 59.999 52.381 0.00 0.00 45.01 3.67
55 56 2.678324 CAGGAAGTCGAGAGAAACCAC 58.322 52.381 0.00 0.00 45.01 4.16
56 57 1.619332 AGGAAGTCGAGAGAAACCACC 59.381 52.381 0.00 0.00 45.01 4.61
57 58 1.337917 GGAAGTCGAGAGAAACCACCC 60.338 57.143 0.00 0.00 45.01 4.61
58 59 1.343465 GAAGTCGAGAGAAACCACCCA 59.657 52.381 0.00 0.00 45.01 4.51
59 60 0.969894 AGTCGAGAGAAACCACCCAG 59.030 55.000 0.00 0.00 45.01 4.45
60 61 0.037232 GTCGAGAGAAACCACCCAGG 60.037 60.000 0.00 0.00 45.01 4.45
61 62 1.192146 TCGAGAGAAACCACCCAGGG 61.192 60.000 2.85 2.85 38.66 4.45
62 63 1.685820 GAGAGAAACCACCCAGGGG 59.314 63.158 11.37 6.87 43.89 4.79
74 75 2.509166 CCCAGGGGTCTCTTTTAACC 57.491 55.000 0.00 0.00 34.64 2.85
75 76 1.339727 CCCAGGGGTCTCTTTTAACCG 60.340 57.143 0.00 0.00 36.35 4.44
76 77 1.339727 CCAGGGGTCTCTTTTAACCGG 60.340 57.143 0.00 0.00 36.35 5.28
77 78 1.350019 CAGGGGTCTCTTTTAACCGGT 59.650 52.381 0.00 0.00 36.35 5.28
78 79 2.568509 CAGGGGTCTCTTTTAACCGGTA 59.431 50.000 8.00 0.00 36.35 4.02
79 80 3.199289 CAGGGGTCTCTTTTAACCGGTAT 59.801 47.826 8.00 0.18 36.35 2.73
80 81 3.199289 AGGGGTCTCTTTTAACCGGTATG 59.801 47.826 8.00 0.00 36.35 2.39
81 82 3.538591 GGGTCTCTTTTAACCGGTATGG 58.461 50.000 8.00 0.00 46.41 2.74
82 83 3.538591 GGTCTCTTTTAACCGGTATGGG 58.461 50.000 8.00 0.00 44.64 4.00
83 84 3.054875 GGTCTCTTTTAACCGGTATGGGT 60.055 47.826 8.00 0.00 44.64 4.51
91 92 2.194201 ACCGGTATGGGTTTGTTCAG 57.806 50.000 4.49 0.00 44.64 3.02
92 93 1.271707 ACCGGTATGGGTTTGTTCAGG 60.272 52.381 4.49 0.00 44.64 3.86
93 94 1.459450 CGGTATGGGTTTGTTCAGGG 58.541 55.000 0.00 0.00 0.00 4.45
94 95 1.847328 GGTATGGGTTTGTTCAGGGG 58.153 55.000 0.00 0.00 0.00 4.79
95 96 1.618616 GGTATGGGTTTGTTCAGGGGG 60.619 57.143 0.00 0.00 0.00 5.40
96 97 1.076513 GTATGGGTTTGTTCAGGGGGT 59.923 52.381 0.00 0.00 0.00 4.95
97 98 0.178935 ATGGGTTTGTTCAGGGGGTG 60.179 55.000 0.00 0.00 0.00 4.61
98 99 1.289982 TGGGTTTGTTCAGGGGGTGA 61.290 55.000 0.00 0.00 0.00 4.02
99 100 0.105913 GGGTTTGTTCAGGGGGTGAA 60.106 55.000 0.00 0.00 43.26 3.18
100 101 1.328279 GGTTTGTTCAGGGGGTGAAG 58.672 55.000 0.00 0.00 46.18 3.02
101 102 1.328279 GTTTGTTCAGGGGGTGAAGG 58.672 55.000 0.00 0.00 46.18 3.46
102 103 0.187361 TTTGTTCAGGGGGTGAAGGG 59.813 55.000 0.00 0.00 46.18 3.95
103 104 0.699577 TTGTTCAGGGGGTGAAGGGA 60.700 55.000 0.00 0.00 46.18 4.20
104 105 1.133809 TGTTCAGGGGGTGAAGGGAG 61.134 60.000 0.00 0.00 46.18 4.30
105 106 2.231380 TTCAGGGGGTGAAGGGAGC 61.231 63.158 0.00 0.00 40.45 4.70
106 107 2.935481 CAGGGGGTGAAGGGAGCA 60.935 66.667 0.00 0.00 0.00 4.26
107 108 2.612115 AGGGGGTGAAGGGAGCAG 60.612 66.667 0.00 0.00 0.00 4.24
108 109 2.610859 GGGGGTGAAGGGAGCAGA 60.611 66.667 0.00 0.00 0.00 4.26
109 110 2.231380 GGGGGTGAAGGGAGCAGAA 61.231 63.158 0.00 0.00 0.00 3.02
110 111 1.767692 GGGGTGAAGGGAGCAGAAA 59.232 57.895 0.00 0.00 0.00 2.52
111 112 0.332972 GGGGTGAAGGGAGCAGAAAT 59.667 55.000 0.00 0.00 0.00 2.17
112 113 1.564348 GGGGTGAAGGGAGCAGAAATA 59.436 52.381 0.00 0.00 0.00 1.40
113 114 2.175715 GGGGTGAAGGGAGCAGAAATAT 59.824 50.000 0.00 0.00 0.00 1.28
114 115 3.373110 GGGGTGAAGGGAGCAGAAATATT 60.373 47.826 0.00 0.00 0.00 1.28
115 116 3.633986 GGGTGAAGGGAGCAGAAATATTG 59.366 47.826 0.00 0.00 0.00 1.90
116 117 4.526970 GGTGAAGGGAGCAGAAATATTGA 58.473 43.478 0.00 0.00 0.00 2.57
117 118 5.136105 GGTGAAGGGAGCAGAAATATTGAT 58.864 41.667 0.00 0.00 0.00 2.57
118 119 5.240403 GGTGAAGGGAGCAGAAATATTGATC 59.760 44.000 0.00 0.00 0.00 2.92
119 120 5.824624 GTGAAGGGAGCAGAAATATTGATCA 59.175 40.000 0.00 0.00 32.81 2.92
120 121 6.017275 GTGAAGGGAGCAGAAATATTGATCAG 60.017 42.308 0.00 0.00 32.81 2.90
121 122 4.983053 AGGGAGCAGAAATATTGATCAGG 58.017 43.478 0.00 0.00 32.81 3.86
122 123 4.077822 GGGAGCAGAAATATTGATCAGGG 58.922 47.826 0.00 0.00 32.81 4.45
123 124 4.077822 GGAGCAGAAATATTGATCAGGGG 58.922 47.826 0.00 0.00 32.81 4.79
124 125 4.077822 GAGCAGAAATATTGATCAGGGGG 58.922 47.826 0.00 0.00 31.56 5.40
125 126 3.464833 AGCAGAAATATTGATCAGGGGGT 59.535 43.478 0.00 0.00 0.00 4.95
126 127 4.665009 AGCAGAAATATTGATCAGGGGGTA 59.335 41.667 0.00 0.00 0.00 3.69
127 128 5.134339 AGCAGAAATATTGATCAGGGGGTAA 59.866 40.000 0.00 0.00 0.00 2.85
128 129 5.833131 GCAGAAATATTGATCAGGGGGTAAA 59.167 40.000 0.00 0.00 0.00 2.01
129 130 6.015940 GCAGAAATATTGATCAGGGGGTAAAG 60.016 42.308 0.00 0.00 0.00 1.85
130 131 7.062957 CAGAAATATTGATCAGGGGGTAAAGT 58.937 38.462 0.00 0.00 0.00 2.66
131 132 7.013655 CAGAAATATTGATCAGGGGGTAAAGTG 59.986 40.741 0.00 0.00 0.00 3.16
132 133 6.590656 AATATTGATCAGGGGGTAAAGTGA 57.409 37.500 0.00 0.00 0.00 3.41
133 134 4.946160 ATTGATCAGGGGGTAAAGTGAA 57.054 40.909 0.00 0.00 0.00 3.18
134 135 3.713826 TGATCAGGGGGTAAAGTGAAC 57.286 47.619 0.00 0.00 0.00 3.18
135 136 2.307686 TGATCAGGGGGTAAAGTGAACC 59.692 50.000 0.00 0.00 36.19 3.62
136 137 1.822425 TCAGGGGGTAAAGTGAACCA 58.178 50.000 0.00 0.00 38.87 3.67
137 138 1.422402 TCAGGGGGTAAAGTGAACCAC 59.578 52.381 0.00 0.00 39.90 4.16
138 139 1.144093 CAGGGGGTAAAGTGAACCACA 59.856 52.381 0.00 0.00 42.62 4.17
139 140 1.144298 AGGGGGTAAAGTGAACCACAC 59.856 52.381 0.00 0.00 42.62 3.82
152 153 4.141287 TGAACCACACACTTTATTCAGGG 58.859 43.478 0.00 0.00 0.00 4.45
153 154 3.876309 ACCACACACTTTATTCAGGGT 57.124 42.857 0.00 0.00 0.00 4.34
154 155 4.986054 ACCACACACTTTATTCAGGGTA 57.014 40.909 0.00 0.00 0.00 3.69
155 156 4.906618 ACCACACACTTTATTCAGGGTAG 58.093 43.478 0.00 0.00 0.00 3.18
156 157 4.349930 ACCACACACTTTATTCAGGGTAGT 59.650 41.667 0.00 0.00 0.00 2.73
157 158 5.544948 ACCACACACTTTATTCAGGGTAGTA 59.455 40.000 0.00 0.00 0.00 1.82
158 159 6.043474 ACCACACACTTTATTCAGGGTAGTAA 59.957 38.462 0.00 0.00 0.00 2.24
159 160 6.938030 CCACACACTTTATTCAGGGTAGTAAA 59.062 38.462 0.00 0.00 0.00 2.01
160 161 7.446013 CCACACACTTTATTCAGGGTAGTAAAA 59.554 37.037 0.00 0.00 0.00 1.52
161 162 9.010029 CACACACTTTATTCAGGGTAGTAAAAT 57.990 33.333 0.00 0.00 0.00 1.82
162 163 9.010029 ACACACTTTATTCAGGGTAGTAAAATG 57.990 33.333 0.00 0.00 0.00 2.32
163 164 8.458843 CACACTTTATTCAGGGTAGTAAAATGG 58.541 37.037 0.00 0.00 0.00 3.16
164 165 8.387813 ACACTTTATTCAGGGTAGTAAAATGGA 58.612 33.333 0.00 0.00 0.00 3.41
165 166 8.674607 CACTTTATTCAGGGTAGTAAAATGGAC 58.325 37.037 0.00 0.00 0.00 4.02
166 167 8.612145 ACTTTATTCAGGGTAGTAAAATGGACT 58.388 33.333 0.00 0.00 0.00 3.85
167 168 9.462606 CTTTATTCAGGGTAGTAAAATGGACTT 57.537 33.333 0.00 0.00 0.00 3.01
178 179 6.415573 AGTAAAATGGACTTTTATCGGCTCT 58.584 36.000 0.00 0.00 40.48 4.09
179 180 6.884836 AGTAAAATGGACTTTTATCGGCTCTT 59.115 34.615 0.00 0.00 40.48 2.85
186 187 1.922570 TTTATCGGCTCTTGTCGCTC 58.077 50.000 0.00 0.00 41.64 5.03
188 189 1.103803 TATCGGCTCTTGTCGCTCTT 58.896 50.000 0.00 0.00 41.64 2.85
191 192 1.080434 GGCTCTTGTCGCTCTTCGT 60.080 57.895 0.00 0.00 39.67 3.85
212 213 0.668401 GACACGTGTCCGGTTTAGGG 60.668 60.000 33.62 0.00 39.07 3.53
295 296 1.216175 AGGCTACATCAACCATGGCAT 59.784 47.619 13.04 0.00 36.72 4.40
302 303 2.140839 TCAACCATGGCATGCACATA 57.859 45.000 22.02 2.64 0.00 2.29
355 356 1.837090 GCCACGGGGATCACCTATT 59.163 57.895 8.67 0.00 40.03 1.73
366 367 5.501156 GGGATCACCTATTGTTCTTCTTGT 58.499 41.667 0.00 0.00 35.85 3.16
411 412 2.266055 GAAGTCGCAGGACCCCAG 59.734 66.667 0.00 0.00 44.54 4.45
508 511 0.602905 ACGTGCTAAAGGTGGTCAGC 60.603 55.000 0.00 0.00 34.56 4.26
514 517 0.400213 TAAAGGTGGTCAGCACCCAG 59.600 55.000 22.79 0.00 42.99 4.45
525 528 2.521465 CACCCAGCAAGCAACCCA 60.521 61.111 0.00 0.00 0.00 4.51
526 529 2.203538 ACCCAGCAAGCAACCCAG 60.204 61.111 0.00 0.00 0.00 4.45
527 530 2.115910 CCCAGCAAGCAACCCAGA 59.884 61.111 0.00 0.00 0.00 3.86
528 531 1.975407 CCCAGCAAGCAACCCAGAG 60.975 63.158 0.00 0.00 0.00 3.35
858 1703 7.892445 CGTGAGCAATATTTGGTATTTGTAC 57.108 36.000 0.00 0.00 42.23 2.90
859 1704 6.627276 CGTGAGCAATATTTGGTATTTGTACG 59.373 38.462 0.00 0.00 42.23 3.67
860 1705 6.413818 GTGAGCAATATTTGGTATTTGTACGC 59.586 38.462 0.00 0.00 42.23 4.42
861 1706 5.507077 AGCAATATTTGGTATTTGTACGCG 58.493 37.500 3.53 3.53 40.04 6.01
862 1707 4.673311 GCAATATTTGGTATTTGTACGCGG 59.327 41.667 12.47 0.00 30.53 6.46
863 1708 5.209240 CAATATTTGGTATTTGTACGCGGG 58.791 41.667 12.47 0.00 30.53 6.13
864 1709 0.803740 TTTGGTATTTGTACGCGGGC 59.196 50.000 12.47 2.61 0.00 6.13
865 1710 0.036199 TTGGTATTTGTACGCGGGCT 60.036 50.000 12.47 0.00 0.00 5.19
866 1711 0.822811 TGGTATTTGTACGCGGGCTA 59.177 50.000 12.47 0.00 0.00 3.93
867 1712 1.413445 TGGTATTTGTACGCGGGCTAT 59.587 47.619 12.47 0.00 0.00 2.97
868 1713 2.158928 TGGTATTTGTACGCGGGCTATT 60.159 45.455 12.47 0.00 0.00 1.73
869 1714 2.874086 GGTATTTGTACGCGGGCTATTT 59.126 45.455 12.47 0.00 0.00 1.40
870 1715 3.303526 GGTATTTGTACGCGGGCTATTTG 60.304 47.826 12.47 0.00 0.00 2.32
884 1729 1.323235 CTATTTGCACGCGTGATCGAA 59.677 47.619 41.19 28.25 39.71 3.71
890 1735 1.131618 CACGCGTGATCGAATCGACA 61.132 55.000 34.93 5.66 39.18 4.35
1130 2923 4.969196 CCTGTGCGCACTCCACGT 62.969 66.667 37.59 0.00 36.01 4.49
1143 2936 2.434185 CACGTCACCGTCATGGGG 60.434 66.667 0.00 0.00 46.28 4.96
1164 3962 3.680196 ACCCCCTCCGTCCTAGCA 61.680 66.667 0.00 0.00 0.00 3.49
1292 4094 2.272146 GAAGCGGATCTGGGGCAA 59.728 61.111 3.14 0.00 0.00 4.52
1559 4368 2.644992 CCGCTTGCACCCTGAAAC 59.355 61.111 0.00 0.00 0.00 2.78
1563 4372 3.254014 CTTGCACCCTGAAACGCGG 62.254 63.158 12.47 0.00 0.00 6.46
1647 4457 2.168521 GCCAGCCAATAGGATAGCGATA 59.831 50.000 0.00 0.00 36.89 2.92
1652 4462 4.965532 AGCCAATAGGATAGCGATAGGAAT 59.034 41.667 0.00 0.00 36.89 3.01
1704 4514 3.211245 GCCACACAGCACAGCACA 61.211 61.111 0.00 0.00 0.00 4.57
1705 4515 3.028130 CCACACAGCACAGCACAG 58.972 61.111 0.00 0.00 0.00 3.66
1706 4516 2.330393 CACACAGCACAGCACAGC 59.670 61.111 0.00 0.00 0.00 4.40
1707 4517 2.124612 ACACAGCACAGCACAGCA 60.125 55.556 0.00 0.00 0.00 4.41
1708 4518 2.330393 CACAGCACAGCACAGCAC 59.670 61.111 0.00 0.00 0.00 4.40
1709 4519 2.124612 ACAGCACAGCACAGCACA 60.125 55.556 0.00 0.00 0.00 4.57
1710 4520 2.184830 ACAGCACAGCACAGCACAG 61.185 57.895 0.00 0.00 0.00 3.66
1711 4521 3.285215 AGCACAGCACAGCACAGC 61.285 61.111 0.00 0.00 0.00 4.40
1712 4522 3.588906 GCACAGCACAGCACAGCA 61.589 61.111 0.00 0.00 0.00 4.41
1713 4523 2.330393 CACAGCACAGCACAGCAC 59.670 61.111 0.00 0.00 0.00 4.40
1714 4524 2.124612 ACAGCACAGCACAGCACA 60.125 55.556 0.00 0.00 0.00 4.57
1715 4525 2.184830 ACAGCACAGCACAGCACAG 61.185 57.895 0.00 0.00 0.00 3.66
1716 4526 3.285215 AGCACAGCACAGCACAGC 61.285 61.111 0.00 0.00 0.00 4.40
1717 4527 3.588906 GCACAGCACAGCACAGCA 61.589 61.111 0.00 0.00 0.00 4.41
1718 4528 2.330393 CACAGCACAGCACAGCAC 59.670 61.111 0.00 0.00 0.00 4.40
1807 4618 8.364142 CCAACTCAGGTCTTAAAGGATCTATAG 58.636 40.741 0.00 0.00 0.00 1.31
1892 4703 3.849911 TCTGCTAATTCTCACGTCCTTG 58.150 45.455 0.00 0.00 0.00 3.61
1898 4712 4.330944 AATTCTCACGTCCTTGTACACA 57.669 40.909 0.00 0.00 0.00 3.72
1899 4713 2.787601 TCTCACGTCCTTGTACACAC 57.212 50.000 0.00 0.00 0.00 3.82
1952 4767 6.820459 CATTATTGCAGAAAAACGAAAAGGG 58.180 36.000 0.00 0.00 0.00 3.95
1960 4776 6.530567 CAGAAAAACGAAAAGGGAAAAACAC 58.469 36.000 0.00 0.00 0.00 3.32
2006 4822 1.872952 CACGTGTTGCCATCTTGAGAA 59.127 47.619 7.58 0.00 0.00 2.87
2010 4830 3.058016 CGTGTTGCCATCTTGAGAACATT 60.058 43.478 0.00 0.00 0.00 2.71
2053 4873 3.733960 CGAGAGGTGTCGCGGTCA 61.734 66.667 6.13 3.16 41.79 4.02
2057 4877 3.338126 GAGGTGTCGCGGTCACGAT 62.338 63.158 21.62 15.69 45.06 3.73
2059 4879 2.025418 GGTGTCGCGGTCACGATTT 61.025 57.895 21.62 0.00 45.06 2.17
2062 4882 1.735198 GTCGCGGTCACGATTTCCA 60.735 57.895 6.13 0.00 45.06 3.53
2068 4888 0.036388 GGTCACGATTTCCAGCCTCA 60.036 55.000 0.00 0.00 0.00 3.86
2083 4903 2.357034 TCACGAACGCTTGAGGCC 60.357 61.111 0.00 0.00 37.74 5.19
2126 4946 4.021925 GGCTCGGGACAAGGTGCT 62.022 66.667 0.00 0.00 0.00 4.40
2135 4955 2.075426 GACAAGGTGCTGGCCAACAC 62.075 60.000 27.76 27.76 31.91 3.32
2168 4989 4.078516 GGCGACCGGTAGCCTTGT 62.079 66.667 41.38 3.73 46.09 3.16
2171 4992 2.267961 GACCGGTAGCCTTGTGGG 59.732 66.667 7.34 0.00 38.36 4.61
2182 5003 0.322008 CCTTGTGGGAGGTGAGCTTC 60.322 60.000 0.00 0.00 37.23 3.86
2185 5006 2.203788 TGGGAGGTGAGCTTCGGT 60.204 61.111 0.00 0.00 0.00 4.69
2189 5010 3.282745 GAGGTGAGCTTCGGTGCGA 62.283 63.158 0.00 0.00 38.13 5.10
2201 5022 1.454111 GGTGCGAGAGGAGGCTAGA 60.454 63.158 0.00 0.00 0.00 2.43
2215 5036 0.817229 GCTAGAGAGGTGGCAATGGC 60.817 60.000 0.00 0.00 40.13 4.40
2216 5037 0.835941 CTAGAGAGGTGGCAATGGCT 59.164 55.000 8.59 0.00 40.87 4.75
2217 5038 0.543277 TAGAGAGGTGGCAATGGCTG 59.457 55.000 8.59 0.00 40.87 4.85
2218 5039 1.751927 GAGAGGTGGCAATGGCTGG 60.752 63.158 8.59 0.00 40.87 4.85
2219 5040 2.757099 GAGGTGGCAATGGCTGGG 60.757 66.667 8.59 0.00 40.87 4.45
2220 5041 3.590466 GAGGTGGCAATGGCTGGGT 62.590 63.158 8.59 0.00 40.87 4.51
2221 5042 3.384532 GGTGGCAATGGCTGGGTG 61.385 66.667 8.59 0.00 40.87 4.61
2222 5043 2.283101 GTGGCAATGGCTGGGTGA 60.283 61.111 8.59 0.00 40.87 4.02
2223 5044 1.907807 GTGGCAATGGCTGGGTGAA 60.908 57.895 8.59 0.00 40.87 3.18
2224 5045 1.607178 TGGCAATGGCTGGGTGAAG 60.607 57.895 8.59 0.00 40.87 3.02
2225 5046 2.575461 GCAATGGCTGGGTGAAGC 59.425 61.111 0.00 0.00 42.75 3.86
2226 5047 2.277591 GCAATGGCTGGGTGAAGCA 61.278 57.895 0.00 0.00 45.43 3.91
2227 5048 1.610554 GCAATGGCTGGGTGAAGCAT 61.611 55.000 0.00 0.00 45.43 3.79
2228 5049 0.899720 CAATGGCTGGGTGAAGCATT 59.100 50.000 0.00 0.00 45.43 3.56
2229 5050 0.899720 AATGGCTGGGTGAAGCATTG 59.100 50.000 0.00 0.00 45.43 2.82
2230 5051 0.974010 ATGGCTGGGTGAAGCATTGG 60.974 55.000 0.00 0.00 45.43 3.16
2231 5052 1.607467 GGCTGGGTGAAGCATTGGT 60.607 57.895 0.00 0.00 45.43 3.67
2232 5053 1.588082 GCTGGGTGAAGCATTGGTG 59.412 57.895 0.00 0.00 43.01 4.17
2233 5054 1.880819 GCTGGGTGAAGCATTGGTGG 61.881 60.000 0.00 0.00 43.01 4.61
2234 5055 1.880819 CTGGGTGAAGCATTGGTGGC 61.881 60.000 0.00 0.00 0.00 5.01
2235 5056 2.649129 GGGTGAAGCATTGGTGGCC 61.649 63.158 0.00 0.00 0.00 5.36
2236 5057 1.907807 GGTGAAGCATTGGTGGCCA 60.908 57.895 0.00 0.00 0.00 5.36
2237 5058 1.259840 GGTGAAGCATTGGTGGCCAT 61.260 55.000 9.72 0.00 31.53 4.40
2238 5059 0.108520 GTGAAGCATTGGTGGCCATG 60.109 55.000 9.72 3.66 31.53 3.66
2239 5060 0.251698 TGAAGCATTGGTGGCCATGA 60.252 50.000 9.72 0.00 31.53 3.07
2240 5061 0.896923 GAAGCATTGGTGGCCATGAA 59.103 50.000 9.72 5.09 31.53 2.57
2241 5062 0.609662 AAGCATTGGTGGCCATGAAC 59.390 50.000 9.72 0.00 31.53 3.18
2242 5063 0.251922 AGCATTGGTGGCCATGAACT 60.252 50.000 9.72 0.00 31.53 3.01
2243 5064 0.174162 GCATTGGTGGCCATGAACTC 59.826 55.000 9.72 0.00 31.53 3.01
2244 5065 1.548081 CATTGGTGGCCATGAACTCA 58.452 50.000 9.72 0.00 31.53 3.41
2245 5066 1.894466 CATTGGTGGCCATGAACTCAA 59.106 47.619 9.72 7.81 31.53 3.02
2246 5067 2.079170 TTGGTGGCCATGAACTCAAA 57.921 45.000 9.72 0.00 31.53 2.69
2247 5068 1.327303 TGGTGGCCATGAACTCAAAC 58.673 50.000 9.72 0.00 0.00 2.93
2248 5069 1.133513 TGGTGGCCATGAACTCAAACT 60.134 47.619 9.72 0.00 0.00 2.66
2249 5070 1.963515 GGTGGCCATGAACTCAAACTT 59.036 47.619 9.72 0.00 0.00 2.66
2250 5071 2.288395 GGTGGCCATGAACTCAAACTTG 60.288 50.000 9.72 0.00 0.00 3.16
2251 5072 2.622942 GTGGCCATGAACTCAAACTTGA 59.377 45.455 9.72 0.00 35.57 3.02
2252 5073 3.256631 GTGGCCATGAACTCAAACTTGAT 59.743 43.478 9.72 0.00 36.46 2.57
2253 5074 3.256383 TGGCCATGAACTCAAACTTGATG 59.744 43.478 0.00 0.00 36.46 3.07
2254 5075 3.367703 GGCCATGAACTCAAACTTGATGG 60.368 47.826 0.00 5.13 36.11 3.51
2255 5076 3.841643 CCATGAACTCAAACTTGATGGC 58.158 45.455 0.00 0.00 36.46 4.40
2256 5077 3.256383 CCATGAACTCAAACTTGATGGCA 59.744 43.478 0.00 0.00 36.46 4.92
2257 5078 4.482386 CATGAACTCAAACTTGATGGCAG 58.518 43.478 0.00 0.00 36.46 4.85
2258 5079 2.886523 TGAACTCAAACTTGATGGCAGG 59.113 45.455 0.00 0.00 36.46 4.85
2259 5080 2.957402 ACTCAAACTTGATGGCAGGA 57.043 45.000 0.00 0.00 36.46 3.86
2260 5081 2.787994 ACTCAAACTTGATGGCAGGAG 58.212 47.619 0.00 0.00 36.46 3.69
2261 5082 2.089980 CTCAAACTTGATGGCAGGAGG 58.910 52.381 0.00 0.00 36.46 4.30
2262 5083 1.425066 TCAAACTTGATGGCAGGAGGT 59.575 47.619 0.00 0.00 31.01 3.85
2263 5084 2.158475 TCAAACTTGATGGCAGGAGGTT 60.158 45.455 0.00 0.00 31.01 3.50
2264 5085 1.915141 AACTTGATGGCAGGAGGTTG 58.085 50.000 0.00 0.00 0.00 3.77
2265 5086 0.610232 ACTTGATGGCAGGAGGTTGC 60.610 55.000 0.00 0.00 43.34 4.17
2266 5087 1.651240 CTTGATGGCAGGAGGTTGCG 61.651 60.000 0.00 0.00 45.00 4.85
2267 5088 2.825836 GATGGCAGGAGGTTGCGG 60.826 66.667 0.00 0.00 45.00 5.69
2278 5099 2.888534 GTTGCGGCCGCGAGAATA 60.889 61.111 41.73 23.55 45.51 1.75
2279 5100 2.888534 TTGCGGCCGCGAGAATAC 60.889 61.111 41.73 16.74 45.51 1.89
2292 5113 2.186076 GAGAATACGCTCGTGAAGTGG 58.814 52.381 5.05 0.00 39.97 4.00
2293 5114 1.816835 AGAATACGCTCGTGAAGTGGA 59.183 47.619 5.05 0.00 39.97 4.02
2294 5115 2.159366 AGAATACGCTCGTGAAGTGGAG 60.159 50.000 5.05 0.00 39.97 3.86
2295 5116 1.460504 ATACGCTCGTGAAGTGGAGA 58.539 50.000 5.05 0.00 39.97 3.71
2296 5117 1.460504 TACGCTCGTGAAGTGGAGAT 58.539 50.000 5.05 0.00 39.97 2.75
2297 5118 1.460504 ACGCTCGTGAAGTGGAGATA 58.539 50.000 0.00 0.00 39.97 1.98
2298 5119 1.816835 ACGCTCGTGAAGTGGAGATAA 59.183 47.619 0.00 0.00 39.97 1.75
2299 5120 2.159366 ACGCTCGTGAAGTGGAGATAAG 60.159 50.000 0.00 0.00 39.97 1.73
2300 5121 2.159366 CGCTCGTGAAGTGGAGATAAGT 60.159 50.000 0.00 0.00 31.90 2.24
2301 5122 3.182967 GCTCGTGAAGTGGAGATAAGTG 58.817 50.000 0.00 0.00 31.90 3.16
2302 5123 3.775202 CTCGTGAAGTGGAGATAAGTGG 58.225 50.000 0.00 0.00 31.90 4.00
2303 5124 2.094182 TCGTGAAGTGGAGATAAGTGGC 60.094 50.000 0.00 0.00 0.00 5.01
2304 5125 2.271800 GTGAAGTGGAGATAAGTGGCG 58.728 52.381 0.00 0.00 0.00 5.69
2305 5126 2.094182 GTGAAGTGGAGATAAGTGGCGA 60.094 50.000 0.00 0.00 0.00 5.54
2306 5127 2.094182 TGAAGTGGAGATAAGTGGCGAC 60.094 50.000 0.00 0.00 0.00 5.19
2307 5128 0.456221 AGTGGAGATAAGTGGCGACG 59.544 55.000 0.00 0.00 0.00 5.12
2308 5129 1.141019 TGGAGATAAGTGGCGACGC 59.859 57.895 12.43 12.43 42.66 5.19
2309 5130 1.141019 GGAGATAAGTGGCGACGCA 59.859 57.895 23.09 4.94 45.56 5.24
2310 5131 0.459585 GGAGATAAGTGGCGACGCAA 60.460 55.000 23.09 7.74 45.56 4.85
2311 5132 1.571919 GAGATAAGTGGCGACGCAAT 58.428 50.000 23.09 6.38 45.56 3.56
2312 5133 1.933853 GAGATAAGTGGCGACGCAATT 59.066 47.619 23.09 14.89 45.56 2.32
2313 5134 1.665679 AGATAAGTGGCGACGCAATTG 59.334 47.619 23.09 0.00 45.56 2.32
2314 5135 0.732571 ATAAGTGGCGACGCAATTGG 59.267 50.000 23.09 0.00 45.56 3.16
2315 5136 1.302383 TAAGTGGCGACGCAATTGGG 61.302 55.000 23.09 19.99 45.56 4.12
2316 5137 3.053291 GTGGCGACGCAATTGGGA 61.053 61.111 27.32 3.14 41.67 4.37
2317 5138 2.281831 TGGCGACGCAATTGGGAA 60.282 55.556 27.32 6.10 0.00 3.97
2318 5139 1.677300 TGGCGACGCAATTGGGAAT 60.677 52.632 27.32 7.41 0.00 3.01
2319 5140 1.226660 GGCGACGCAATTGGGAATG 60.227 57.895 27.32 16.57 0.00 2.67
2320 5141 1.226660 GCGACGCAATTGGGAATGG 60.227 57.895 27.32 13.93 0.00 3.16
2321 5142 1.433064 CGACGCAATTGGGAATGGG 59.567 57.895 27.32 8.61 35.78 4.00
2322 5143 1.312371 CGACGCAATTGGGAATGGGT 61.312 55.000 27.32 5.86 44.24 4.51
2323 5144 2.578683 ACGCAATTGGGAATGGGTC 58.421 52.632 27.32 0.00 38.16 4.46
2324 5145 0.251564 ACGCAATTGGGAATGGGTCA 60.252 50.000 27.32 0.00 38.16 4.02
2325 5146 0.457035 CGCAATTGGGAATGGGTCAG 59.543 55.000 17.07 0.00 0.00 3.51
2326 5147 0.826062 GCAATTGGGAATGGGTCAGG 59.174 55.000 7.72 0.00 0.00 3.86
2327 5148 1.619432 GCAATTGGGAATGGGTCAGGA 60.619 52.381 7.72 0.00 0.00 3.86
2328 5149 2.956385 GCAATTGGGAATGGGTCAGGAT 60.956 50.000 7.72 0.00 0.00 3.24
2329 5150 2.696707 CAATTGGGAATGGGTCAGGATG 59.303 50.000 0.00 0.00 37.54 3.51
2330 5151 1.381867 TTGGGAATGGGTCAGGATGT 58.618 50.000 0.00 0.00 37.40 3.06
2331 5152 2.278657 TGGGAATGGGTCAGGATGTA 57.721 50.000 0.00 0.00 37.40 2.29
2332 5153 2.126882 TGGGAATGGGTCAGGATGTAG 58.873 52.381 0.00 0.00 37.40 2.74
2333 5154 2.293519 TGGGAATGGGTCAGGATGTAGA 60.294 50.000 0.00 0.00 37.40 2.59
2334 5155 2.777692 GGGAATGGGTCAGGATGTAGAA 59.222 50.000 0.00 0.00 37.40 2.10
2335 5156 3.181450 GGGAATGGGTCAGGATGTAGAAG 60.181 52.174 0.00 0.00 37.40 2.85
2336 5157 3.711704 GGAATGGGTCAGGATGTAGAAGA 59.288 47.826 0.00 0.00 37.40 2.87
2337 5158 4.443598 GGAATGGGTCAGGATGTAGAAGAC 60.444 50.000 0.00 0.00 37.40 3.01
2338 5159 2.100197 TGGGTCAGGATGTAGAAGACG 58.900 52.381 0.00 0.00 37.40 4.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 0.034380 TCAACGGTGGTTTTGACCCA 60.034 50.000 0.00 0.00 32.98 4.51
4 5 3.199677 CACTAGTCAACGGTGGTTTTGA 58.800 45.455 0.00 0.00 32.98 2.69
5 6 2.286772 GCACTAGTCAACGGTGGTTTTG 60.287 50.000 0.00 0.00 32.98 2.44
6 7 1.944709 GCACTAGTCAACGGTGGTTTT 59.055 47.619 0.00 0.00 32.98 2.43
7 8 1.589803 GCACTAGTCAACGGTGGTTT 58.410 50.000 0.00 0.00 32.98 3.27
8 9 0.250166 GGCACTAGTCAACGGTGGTT 60.250 55.000 0.00 0.00 36.63 3.67
9 10 1.370064 GGCACTAGTCAACGGTGGT 59.630 57.895 0.00 0.00 0.00 4.16
10 11 0.949105 GTGGCACTAGTCAACGGTGG 60.949 60.000 11.13 0.00 0.00 4.61
11 12 1.282248 CGTGGCACTAGTCAACGGTG 61.282 60.000 16.72 0.00 0.00 4.94
12 13 1.006571 CGTGGCACTAGTCAACGGT 60.007 57.895 16.72 0.00 0.00 4.83
13 14 1.006571 ACGTGGCACTAGTCAACGG 60.007 57.895 16.72 0.00 31.40 4.44
14 15 0.318360 TGACGTGGCACTAGTCAACG 60.318 55.000 21.10 16.09 40.81 4.10
15 16 1.419374 CTGACGTGGCACTAGTCAAC 58.581 55.000 22.72 3.70 42.36 3.18
16 17 0.319555 GCTGACGTGGCACTAGTCAA 60.320 55.000 22.72 11.38 42.36 3.18
17 18 1.289066 GCTGACGTGGCACTAGTCA 59.711 57.895 21.69 21.69 41.27 3.41
18 19 0.734253 CTGCTGACGTGGCACTAGTC 60.734 60.000 16.72 16.26 35.71 2.59
19 20 1.290324 CTGCTGACGTGGCACTAGT 59.710 57.895 16.72 6.99 35.71 2.57
20 21 1.446792 CCTGCTGACGTGGCACTAG 60.447 63.158 16.72 11.91 35.71 2.57
21 22 1.468506 TTCCTGCTGACGTGGCACTA 61.469 55.000 16.72 0.98 35.71 2.74
22 23 2.721971 CTTCCTGCTGACGTGGCACT 62.722 60.000 16.72 2.45 35.71 4.40
23 24 2.280797 TTCCTGCTGACGTGGCAC 60.281 61.111 7.79 7.79 35.71 5.01
24 25 2.031012 CTTCCTGCTGACGTGGCA 59.969 61.111 11.48 11.48 38.10 4.92
25 26 2.029844 GACTTCCTGCTGACGTGGC 61.030 63.158 0.00 0.00 0.00 5.01
26 27 1.734477 CGACTTCCTGCTGACGTGG 60.734 63.158 0.00 0.00 0.00 4.94
27 28 0.730834 CTCGACTTCCTGCTGACGTG 60.731 60.000 0.00 0.00 0.00 4.49
28 29 0.889638 TCTCGACTTCCTGCTGACGT 60.890 55.000 0.00 0.00 0.00 4.34
29 30 0.179176 CTCTCGACTTCCTGCTGACG 60.179 60.000 0.00 0.00 0.00 4.35
30 31 1.169577 TCTCTCGACTTCCTGCTGAC 58.830 55.000 0.00 0.00 0.00 3.51
31 32 1.911057 TTCTCTCGACTTCCTGCTGA 58.089 50.000 0.00 0.00 0.00 4.26
32 33 2.333014 GTTTCTCTCGACTTCCTGCTG 58.667 52.381 0.00 0.00 0.00 4.41
33 34 1.273886 GGTTTCTCTCGACTTCCTGCT 59.726 52.381 0.00 0.00 0.00 4.24
34 35 1.000955 TGGTTTCTCTCGACTTCCTGC 59.999 52.381 0.00 0.00 0.00 4.85
35 36 2.610727 GGTGGTTTCTCTCGACTTCCTG 60.611 54.545 0.00 0.00 0.00 3.86
36 37 1.619332 GGTGGTTTCTCTCGACTTCCT 59.381 52.381 0.00 0.00 0.00 3.36
37 38 1.337917 GGGTGGTTTCTCTCGACTTCC 60.338 57.143 0.00 0.00 0.00 3.46
38 39 1.343465 TGGGTGGTTTCTCTCGACTTC 59.657 52.381 0.00 0.00 0.00 3.01
39 40 1.344763 CTGGGTGGTTTCTCTCGACTT 59.655 52.381 0.00 0.00 0.00 3.01
40 41 0.969894 CTGGGTGGTTTCTCTCGACT 59.030 55.000 0.00 0.00 0.00 4.18
41 42 0.037232 CCTGGGTGGTTTCTCTCGAC 60.037 60.000 0.00 0.00 0.00 4.20
42 43 1.192146 CCCTGGGTGGTTTCTCTCGA 61.192 60.000 3.97 0.00 0.00 4.04
43 44 1.296715 CCCTGGGTGGTTTCTCTCG 59.703 63.158 3.97 0.00 0.00 4.04
44 45 1.685820 CCCCTGGGTGGTTTCTCTC 59.314 63.158 12.71 0.00 0.00 3.20
45 46 3.922366 CCCCTGGGTGGTTTCTCT 58.078 61.111 12.71 0.00 0.00 3.10
55 56 1.339727 CGGTTAAAAGAGACCCCTGGG 60.340 57.143 5.50 5.50 42.03 4.45
56 57 1.339727 CCGGTTAAAAGAGACCCCTGG 60.340 57.143 0.00 0.00 32.14 4.45
57 58 1.350019 ACCGGTTAAAAGAGACCCCTG 59.650 52.381 0.00 0.00 32.14 4.45
58 59 1.738474 ACCGGTTAAAAGAGACCCCT 58.262 50.000 0.00 0.00 32.14 4.79
59 60 3.538591 CATACCGGTTAAAAGAGACCCC 58.461 50.000 15.04 0.00 32.14 4.95
60 61 3.538591 CCATACCGGTTAAAAGAGACCC 58.461 50.000 15.04 0.00 32.14 4.46
61 62 3.054875 ACCCATACCGGTTAAAAGAGACC 60.055 47.826 15.04 0.00 29.19 3.85
62 63 4.212143 ACCCATACCGGTTAAAAGAGAC 57.788 45.455 15.04 0.00 29.19 3.36
63 64 4.914177 AACCCATACCGGTTAAAAGAGA 57.086 40.909 15.04 0.00 44.50 3.10
64 65 4.763279 ACAAACCCATACCGGTTAAAAGAG 59.237 41.667 15.04 0.00 45.63 2.85
65 66 4.727677 ACAAACCCATACCGGTTAAAAGA 58.272 39.130 15.04 0.00 45.63 2.52
66 67 5.009811 TGAACAAACCCATACCGGTTAAAAG 59.990 40.000 15.04 0.39 45.63 2.27
67 68 4.891756 TGAACAAACCCATACCGGTTAAAA 59.108 37.500 15.04 0.00 45.63 1.52
68 69 4.467769 TGAACAAACCCATACCGGTTAAA 58.532 39.130 15.04 0.00 45.63 1.52
69 70 4.073549 CTGAACAAACCCATACCGGTTAA 58.926 43.478 15.04 0.00 45.63 2.01
70 71 3.559597 CCTGAACAAACCCATACCGGTTA 60.560 47.826 15.04 0.00 45.63 2.85
72 73 1.271707 CCTGAACAAACCCATACCGGT 60.272 52.381 13.98 13.98 37.93 5.28
73 74 1.459450 CCTGAACAAACCCATACCGG 58.541 55.000 0.00 0.00 0.00 5.28
74 75 1.459450 CCCTGAACAAACCCATACCG 58.541 55.000 0.00 0.00 0.00 4.02
75 76 1.618616 CCCCCTGAACAAACCCATACC 60.619 57.143 0.00 0.00 0.00 2.73
76 77 1.076513 ACCCCCTGAACAAACCCATAC 59.923 52.381 0.00 0.00 0.00 2.39
77 78 1.076350 CACCCCCTGAACAAACCCATA 59.924 52.381 0.00 0.00 0.00 2.74
78 79 0.178935 CACCCCCTGAACAAACCCAT 60.179 55.000 0.00 0.00 0.00 4.00
79 80 1.231641 CACCCCCTGAACAAACCCA 59.768 57.895 0.00 0.00 0.00 4.51
80 81 0.105913 TTCACCCCCTGAACAAACCC 60.106 55.000 0.00 0.00 33.65 4.11
81 82 1.328279 CTTCACCCCCTGAACAAACC 58.672 55.000 0.00 0.00 33.65 3.27
82 83 1.328279 CCTTCACCCCCTGAACAAAC 58.672 55.000 0.00 0.00 33.65 2.93
83 84 0.187361 CCCTTCACCCCCTGAACAAA 59.813 55.000 0.00 0.00 33.65 2.83
84 85 0.699577 TCCCTTCACCCCCTGAACAA 60.700 55.000 0.00 0.00 33.65 2.83
85 86 1.073319 TCCCTTCACCCCCTGAACA 60.073 57.895 0.00 0.00 33.65 3.18
86 87 1.685820 CTCCCTTCACCCCCTGAAC 59.314 63.158 0.00 0.00 33.65 3.18
87 88 2.231380 GCTCCCTTCACCCCCTGAA 61.231 63.158 0.00 0.00 36.46 3.02
88 89 2.610859 GCTCCCTTCACCCCCTGA 60.611 66.667 0.00 0.00 0.00 3.86
89 90 2.935481 TGCTCCCTTCACCCCCTG 60.935 66.667 0.00 0.00 0.00 4.45
90 91 2.612115 CTGCTCCCTTCACCCCCT 60.612 66.667 0.00 0.00 0.00 4.79
91 92 1.789576 TTTCTGCTCCCTTCACCCCC 61.790 60.000 0.00 0.00 0.00 5.40
92 93 0.332972 ATTTCTGCTCCCTTCACCCC 59.667 55.000 0.00 0.00 0.00 4.95
93 94 3.584733 ATATTTCTGCTCCCTTCACCC 57.415 47.619 0.00 0.00 0.00 4.61
94 95 4.526970 TCAATATTTCTGCTCCCTTCACC 58.473 43.478 0.00 0.00 0.00 4.02
95 96 5.824624 TGATCAATATTTCTGCTCCCTTCAC 59.175 40.000 0.00 0.00 0.00 3.18
96 97 6.005066 TGATCAATATTTCTGCTCCCTTCA 57.995 37.500 0.00 0.00 0.00 3.02
97 98 5.472820 CCTGATCAATATTTCTGCTCCCTTC 59.527 44.000 0.00 0.00 0.00 3.46
98 99 5.383476 CCTGATCAATATTTCTGCTCCCTT 58.617 41.667 0.00 0.00 0.00 3.95
99 100 4.202545 CCCTGATCAATATTTCTGCTCCCT 60.203 45.833 0.00 0.00 0.00 4.20
100 101 4.077822 CCCTGATCAATATTTCTGCTCCC 58.922 47.826 0.00 0.00 0.00 4.30
101 102 4.077822 CCCCTGATCAATATTTCTGCTCC 58.922 47.826 0.00 0.00 0.00 4.70
102 103 4.077822 CCCCCTGATCAATATTTCTGCTC 58.922 47.826 0.00 0.00 0.00 4.26
103 104 3.464833 ACCCCCTGATCAATATTTCTGCT 59.535 43.478 0.00 0.00 0.00 4.24
104 105 3.837355 ACCCCCTGATCAATATTTCTGC 58.163 45.455 0.00 0.00 0.00 4.26
105 106 7.013655 CACTTTACCCCCTGATCAATATTTCTG 59.986 40.741 0.00 0.00 0.00 3.02
106 107 7.062957 CACTTTACCCCCTGATCAATATTTCT 58.937 38.462 0.00 0.00 0.00 2.52
107 108 7.060421 TCACTTTACCCCCTGATCAATATTTC 58.940 38.462 0.00 0.00 0.00 2.17
108 109 6.980577 TCACTTTACCCCCTGATCAATATTT 58.019 36.000 0.00 0.00 0.00 1.40
109 110 6.590656 TCACTTTACCCCCTGATCAATATT 57.409 37.500 0.00 0.00 0.00 1.28
110 111 6.365520 GTTCACTTTACCCCCTGATCAATAT 58.634 40.000 0.00 0.00 0.00 1.28
111 112 5.339695 GGTTCACTTTACCCCCTGATCAATA 60.340 44.000 0.00 0.00 0.00 1.90
112 113 4.569865 GGTTCACTTTACCCCCTGATCAAT 60.570 45.833 0.00 0.00 0.00 2.57
113 114 3.245122 GGTTCACTTTACCCCCTGATCAA 60.245 47.826 0.00 0.00 0.00 2.57
114 115 2.307686 GGTTCACTTTACCCCCTGATCA 59.692 50.000 0.00 0.00 0.00 2.92
115 116 2.307686 TGGTTCACTTTACCCCCTGATC 59.692 50.000 0.00 0.00 34.66 2.92
116 117 2.041216 GTGGTTCACTTTACCCCCTGAT 59.959 50.000 0.00 0.00 34.66 2.90
117 118 1.422402 GTGGTTCACTTTACCCCCTGA 59.578 52.381 0.00 0.00 34.66 3.86
118 119 1.144093 TGTGGTTCACTTTACCCCCTG 59.856 52.381 0.00 0.00 35.11 4.45
119 120 1.144298 GTGTGGTTCACTTTACCCCCT 59.856 52.381 0.00 0.00 43.13 4.79
120 121 1.133730 TGTGTGGTTCACTTTACCCCC 60.134 52.381 0.00 0.00 46.27 5.40
121 122 1.951602 GTGTGTGGTTCACTTTACCCC 59.048 52.381 0.00 0.00 46.27 4.95
122 123 2.927028 AGTGTGTGGTTCACTTTACCC 58.073 47.619 0.00 0.00 46.27 3.69
128 129 4.821805 CCTGAATAAAGTGTGTGGTTCACT 59.178 41.667 0.00 0.00 46.30 3.41
129 130 4.023193 CCCTGAATAAAGTGTGTGGTTCAC 60.023 45.833 0.00 0.00 46.31 3.18
130 131 4.141287 CCCTGAATAAAGTGTGTGGTTCA 58.859 43.478 0.00 0.00 0.00 3.18
131 132 4.142038 ACCCTGAATAAAGTGTGTGGTTC 58.858 43.478 0.00 0.00 0.00 3.62
132 133 4.178956 ACCCTGAATAAAGTGTGTGGTT 57.821 40.909 0.00 0.00 0.00 3.67
133 134 3.876309 ACCCTGAATAAAGTGTGTGGT 57.124 42.857 0.00 0.00 0.00 4.16
134 135 4.906618 ACTACCCTGAATAAAGTGTGTGG 58.093 43.478 0.00 0.00 0.00 4.17
135 136 7.972832 TTTACTACCCTGAATAAAGTGTGTG 57.027 36.000 0.00 0.00 0.00 3.82
136 137 9.010029 CATTTTACTACCCTGAATAAAGTGTGT 57.990 33.333 0.00 0.00 0.00 3.72
137 138 8.458843 CCATTTTACTACCCTGAATAAAGTGTG 58.541 37.037 0.00 0.00 0.00 3.82
138 139 8.387813 TCCATTTTACTACCCTGAATAAAGTGT 58.612 33.333 0.00 0.00 0.00 3.55
139 140 8.674607 GTCCATTTTACTACCCTGAATAAAGTG 58.325 37.037 0.00 0.00 0.00 3.16
140 141 8.612145 AGTCCATTTTACTACCCTGAATAAAGT 58.388 33.333 0.00 0.00 0.00 2.66
141 142 9.462606 AAGTCCATTTTACTACCCTGAATAAAG 57.537 33.333 0.00 0.00 0.00 1.85
142 143 9.816787 AAAGTCCATTTTACTACCCTGAATAAA 57.183 29.630 0.00 0.00 0.00 1.40
143 144 9.816787 AAAAGTCCATTTTACTACCCTGAATAA 57.183 29.630 0.00 0.00 39.36 1.40
145 146 9.990868 ATAAAAGTCCATTTTACTACCCTGAAT 57.009 29.630 0.00 0.00 44.15 2.57
146 147 9.457436 GATAAAAGTCCATTTTACTACCCTGAA 57.543 33.333 0.00 0.00 44.15 3.02
147 148 7.767198 CGATAAAAGTCCATTTTACTACCCTGA 59.233 37.037 0.00 0.00 44.15 3.86
148 149 7.012044 CCGATAAAAGTCCATTTTACTACCCTG 59.988 40.741 0.00 0.00 44.15 4.45
149 150 7.052248 CCGATAAAAGTCCATTTTACTACCCT 58.948 38.462 0.00 0.00 44.15 4.34
150 151 6.238566 GCCGATAAAAGTCCATTTTACTACCC 60.239 42.308 0.00 0.00 44.15 3.69
151 152 6.541278 AGCCGATAAAAGTCCATTTTACTACC 59.459 38.462 0.00 0.00 44.15 3.18
152 153 7.494952 AGAGCCGATAAAAGTCCATTTTACTAC 59.505 37.037 0.00 0.00 44.15 2.73
153 154 7.562135 AGAGCCGATAAAAGTCCATTTTACTA 58.438 34.615 0.00 0.00 44.15 1.82
154 155 6.415573 AGAGCCGATAAAAGTCCATTTTACT 58.584 36.000 0.00 0.00 44.15 2.24
155 156 6.679327 AGAGCCGATAAAAGTCCATTTTAC 57.321 37.500 0.00 0.00 44.15 2.01
156 157 6.657541 ACAAGAGCCGATAAAAGTCCATTTTA 59.342 34.615 0.00 0.00 45.13 1.52
157 158 5.476945 ACAAGAGCCGATAAAAGTCCATTTT 59.523 36.000 0.00 0.00 43.54 1.82
158 159 5.010282 ACAAGAGCCGATAAAAGTCCATTT 58.990 37.500 0.00 0.00 0.00 2.32
159 160 4.589908 ACAAGAGCCGATAAAAGTCCATT 58.410 39.130 0.00 0.00 0.00 3.16
160 161 4.192317 GACAAGAGCCGATAAAAGTCCAT 58.808 43.478 0.00 0.00 0.00 3.41
161 162 3.596214 GACAAGAGCCGATAAAAGTCCA 58.404 45.455 0.00 0.00 0.00 4.02
162 163 2.603560 CGACAAGAGCCGATAAAAGTCC 59.396 50.000 0.00 0.00 0.00 3.85
163 164 2.029365 GCGACAAGAGCCGATAAAAGTC 59.971 50.000 0.00 0.00 0.00 3.01
164 165 2.000447 GCGACAAGAGCCGATAAAAGT 59.000 47.619 0.00 0.00 0.00 2.66
165 166 2.271800 AGCGACAAGAGCCGATAAAAG 58.728 47.619 0.00 0.00 34.64 2.27
166 167 2.094182 AGAGCGACAAGAGCCGATAAAA 60.094 45.455 0.00 0.00 34.64 1.52
167 168 1.476891 AGAGCGACAAGAGCCGATAAA 59.523 47.619 0.00 0.00 34.64 1.40
170 171 0.179124 GAAGAGCGACAAGAGCCGAT 60.179 55.000 0.00 0.00 34.64 4.18
178 179 0.596600 GTGTCCACGAAGAGCGACAA 60.597 55.000 0.00 0.00 44.57 3.18
179 180 1.007734 GTGTCCACGAAGAGCGACA 60.008 57.895 0.00 0.00 44.57 4.35
198 199 0.036671 CTGACCCCTAAACCGGACAC 60.037 60.000 9.46 0.00 0.00 3.67
205 206 1.982958 TCTCCAACCTGACCCCTAAAC 59.017 52.381 0.00 0.00 0.00 2.01
206 207 2.426431 TCTCCAACCTGACCCCTAAA 57.574 50.000 0.00 0.00 0.00 1.85
212 213 1.077429 GGGCATCTCCAACCTGACC 60.077 63.158 0.00 0.00 36.21 4.02
247 248 5.831702 TCTGTGCTAAGTAAGTACTAGCC 57.168 43.478 11.19 4.72 41.10 3.93
295 296 3.366883 GCGTTTTCTTCCCATTATGTGCA 60.367 43.478 0.00 0.00 0.00 4.57
302 303 1.584495 GCGGCGTTTTCTTCCCATT 59.416 52.632 9.37 0.00 0.00 3.16
333 334 4.077184 GTGATCCCCGTGGCGTCA 62.077 66.667 0.00 0.00 0.00 4.35
343 344 5.501156 ACAAGAAGAACAATAGGTGATCCC 58.499 41.667 0.00 0.00 29.33 3.85
355 356 5.300792 GGTTCACCCATTTACAAGAAGAACA 59.699 40.000 0.00 0.00 35.73 3.18
390 391 2.435059 GGTCCTGCGACTTCTGGC 60.435 66.667 0.00 0.00 39.15 4.85
508 511 2.521465 TGGGTTGCTTGCTGGGTG 60.521 61.111 0.00 0.00 0.00 4.61
547 550 1.609208 GACTGTGCATGGTTCAACCT 58.391 50.000 8.40 0.00 39.58 3.50
548 551 0.238289 CGACTGTGCATGGTTCAACC 59.762 55.000 0.00 0.00 39.22 3.77
549 552 0.238289 CCGACTGTGCATGGTTCAAC 59.762 55.000 0.00 0.00 0.00 3.18
580 583 1.017701 CCGCTACCTTTGGTCGTTCC 61.018 60.000 0.00 0.00 37.09 3.62
621 624 2.674380 CCACTTGCACCCTGAGCC 60.674 66.667 0.00 0.00 0.00 4.70
699 702 3.776781 CCCGCATACCACGACCCA 61.777 66.667 0.00 0.00 0.00 4.51
856 1701 2.168503 CGTGCAAATAGCCCGCGTA 61.169 57.895 4.92 0.00 44.83 4.42
857 1702 3.496131 CGTGCAAATAGCCCGCGT 61.496 61.111 4.92 0.00 44.83 6.01
861 1706 1.714899 ATCACGCGTGCAAATAGCCC 61.715 55.000 33.63 0.00 44.83 5.19
862 1707 0.316196 GATCACGCGTGCAAATAGCC 60.316 55.000 33.63 11.87 44.83 3.93
863 1708 0.651610 CGATCACGCGTGCAAATAGC 60.652 55.000 33.63 18.07 45.96 2.97
864 1709 0.920664 TCGATCACGCGTGCAAATAG 59.079 50.000 33.63 21.19 39.58 1.73
865 1710 1.351153 TTCGATCACGCGTGCAAATA 58.649 45.000 33.63 17.29 39.58 1.40
866 1711 0.726827 ATTCGATCACGCGTGCAAAT 59.273 45.000 33.63 22.17 39.58 2.32
867 1712 0.094558 GATTCGATCACGCGTGCAAA 59.905 50.000 33.63 22.50 39.58 3.68
868 1713 1.707451 GATTCGATCACGCGTGCAA 59.293 52.632 33.63 21.73 39.58 4.08
869 1714 2.504653 CGATTCGATCACGCGTGCA 61.505 57.895 33.63 22.17 39.58 4.57
870 1715 2.221552 TCGATTCGATCACGCGTGC 61.222 57.895 33.63 19.75 39.58 5.34
884 1729 1.227556 GCGGCCTATGGTTGTCGAT 60.228 57.895 0.00 0.00 0.00 3.59
1292 4094 3.071457 TGGCCACGTAGATGATGATGATT 59.929 43.478 0.00 0.00 0.00 2.57
1563 4372 2.202349 GATTGTGCTTGCGTCCGC 60.202 61.111 4.42 4.42 42.35 5.54
1564 4373 2.096406 CGATTGTGCTTGCGTCCG 59.904 61.111 0.00 0.00 0.00 4.79
1565 4374 2.202349 GCGATTGTGCTTGCGTCC 60.202 61.111 0.00 0.00 0.00 4.79
1566 4375 2.202349 GGCGATTGTGCTTGCGTC 60.202 61.111 0.00 0.00 34.52 5.19
1567 4376 3.737172 GGGCGATTGTGCTTGCGT 61.737 61.111 0.00 0.00 34.52 5.24
1568 4377 4.481112 GGGGCGATTGTGCTTGCG 62.481 66.667 0.00 0.00 34.52 4.85
1605 4414 0.322008 CCCTCACCCTCTTTCTGTGC 60.322 60.000 0.00 0.00 0.00 4.57
1609 4418 2.960688 GCGCCCTCACCCTCTTTCT 61.961 63.158 0.00 0.00 0.00 2.52
1647 4457 7.112122 TGTCAGATTGCTATTTGTGTATTCCT 58.888 34.615 0.00 0.00 0.00 3.36
1652 4462 6.934083 TCACTTGTCAGATTGCTATTTGTGTA 59.066 34.615 0.00 0.00 0.00 2.90
1704 4514 3.285215 GCTGTGCTGTGCTGTGCT 61.285 61.111 0.00 0.00 0.00 4.40
1705 4515 3.588906 TGCTGTGCTGTGCTGTGC 61.589 61.111 0.00 0.00 0.00 4.57
1706 4516 1.995646 TTGTGCTGTGCTGTGCTGTG 61.996 55.000 0.00 0.00 0.00 3.66
1707 4517 1.721664 CTTGTGCTGTGCTGTGCTGT 61.722 55.000 0.00 0.00 0.00 4.40
1708 4518 1.008881 CTTGTGCTGTGCTGTGCTG 60.009 57.895 0.00 0.00 0.00 4.41
1709 4519 1.153107 TCTTGTGCTGTGCTGTGCT 60.153 52.632 0.00 0.00 0.00 4.40
1710 4520 1.009222 GTCTTGTGCTGTGCTGTGC 60.009 57.895 0.00 0.00 0.00 4.57
1711 4521 0.028505 GTGTCTTGTGCTGTGCTGTG 59.971 55.000 0.00 0.00 0.00 3.66
1712 4522 1.431488 CGTGTCTTGTGCTGTGCTGT 61.431 55.000 0.00 0.00 0.00 4.40
1713 4523 1.277739 CGTGTCTTGTGCTGTGCTG 59.722 57.895 0.00 0.00 0.00 4.41
1714 4524 2.537560 GCGTGTCTTGTGCTGTGCT 61.538 57.895 0.00 0.00 0.00 4.40
1715 4525 2.051882 GCGTGTCTTGTGCTGTGC 60.052 61.111 0.00 0.00 0.00 4.57
1716 4526 1.010797 GTGCGTGTCTTGTGCTGTG 60.011 57.895 0.00 0.00 0.00 3.66
1717 4527 0.815213 ATGTGCGTGTCTTGTGCTGT 60.815 50.000 0.00 0.00 0.00 4.40
1718 4528 0.110509 GATGTGCGTGTCTTGTGCTG 60.111 55.000 0.00 0.00 0.00 4.41
1807 4618 7.425606 TCACCAAGAATTAGCAAAAGAACTTC 58.574 34.615 0.00 0.00 0.00 3.01
1872 4683 3.589988 ACAAGGACGTGAGAATTAGCAG 58.410 45.455 0.00 0.00 0.00 4.24
1930 4744 6.150396 TCCCTTTTCGTTTTTCTGCAATAA 57.850 33.333 0.00 0.00 0.00 1.40
1952 4767 6.425417 TCAACAAAAGGACCAAAGTGTTTTTC 59.575 34.615 0.00 0.00 0.00 2.29
1960 4776 5.233988 TGTTGTTCAACAAAAGGACCAAAG 58.766 37.500 14.73 0.00 40.15 2.77
2001 4817 1.271543 CCTCCAGCCACAATGTTCTCA 60.272 52.381 0.00 0.00 0.00 3.27
2006 4822 2.765969 CCCCTCCAGCCACAATGT 59.234 61.111 0.00 0.00 0.00 2.71
2053 4873 0.320374 TTCGTGAGGCTGGAAATCGT 59.680 50.000 0.00 0.00 0.00 3.73
2057 4877 1.959226 GCGTTCGTGAGGCTGGAAA 60.959 57.895 0.00 0.00 36.26 3.13
2059 4879 3.303135 AGCGTTCGTGAGGCTGGA 61.303 61.111 0.00 0.00 46.99 3.86
2068 4888 4.295119 ACGGCCTCAAGCGTTCGT 62.295 61.111 0.00 0.00 45.17 3.85
2083 4903 3.036084 GTGAGCACCCGTGTCACG 61.036 66.667 18.54 18.54 42.11 4.35
2111 4931 2.046892 CCAGCACCTTGTCCCGAG 60.047 66.667 0.00 0.00 0.00 4.63
2119 4939 2.906897 CGTGTTGGCCAGCACCTT 60.907 61.111 37.43 0.00 39.02 3.50
2160 4981 1.553690 GCTCACCTCCCACAAGGCTA 61.554 60.000 0.00 0.00 40.34 3.93
2167 4988 2.266055 CCGAAGCTCACCTCCCAC 59.734 66.667 0.00 0.00 0.00 4.61
2168 4989 2.203788 ACCGAAGCTCACCTCCCA 60.204 61.111 0.00 0.00 0.00 4.37
2171 4992 2.811317 CGCACCGAAGCTCACCTC 60.811 66.667 0.00 0.00 0.00 3.85
2182 5003 2.829003 TAGCCTCCTCTCGCACCG 60.829 66.667 0.00 0.00 0.00 4.94
2185 5006 0.179032 CTCTCTAGCCTCCTCTCGCA 60.179 60.000 0.00 0.00 0.00 5.10
2189 5010 0.555769 CCACCTCTCTAGCCTCCTCT 59.444 60.000 0.00 0.00 0.00 3.69
2201 5022 2.357836 CCAGCCATTGCCACCTCT 59.642 61.111 0.00 0.00 38.69 3.69
2215 5036 1.880819 GCCACCAATGCTTCACCCAG 61.881 60.000 0.00 0.00 0.00 4.45
2216 5037 1.907807 GCCACCAATGCTTCACCCA 60.908 57.895 0.00 0.00 0.00 4.51
2217 5038 2.649129 GGCCACCAATGCTTCACCC 61.649 63.158 0.00 0.00 0.00 4.61
2218 5039 1.259840 ATGGCCACCAATGCTTCACC 61.260 55.000 8.16 0.00 36.95 4.02
2219 5040 0.108520 CATGGCCACCAATGCTTCAC 60.109 55.000 8.16 0.00 36.95 3.18
2220 5041 0.251698 TCATGGCCACCAATGCTTCA 60.252 50.000 8.16 0.00 36.95 3.02
2221 5042 0.896923 TTCATGGCCACCAATGCTTC 59.103 50.000 8.16 0.00 36.95 3.86
2222 5043 0.609662 GTTCATGGCCACCAATGCTT 59.390 50.000 8.16 0.00 36.95 3.91
2223 5044 0.251922 AGTTCATGGCCACCAATGCT 60.252 50.000 8.16 0.00 36.95 3.79
2224 5045 0.174162 GAGTTCATGGCCACCAATGC 59.826 55.000 8.16 0.00 36.95 3.56
2225 5046 1.548081 TGAGTTCATGGCCACCAATG 58.452 50.000 8.16 1.52 36.95 2.82
2226 5047 2.299867 GTTTGAGTTCATGGCCACCAAT 59.700 45.455 8.16 0.00 36.95 3.16
2227 5048 1.686052 GTTTGAGTTCATGGCCACCAA 59.314 47.619 8.16 0.00 36.95 3.67
2228 5049 1.133513 AGTTTGAGTTCATGGCCACCA 60.134 47.619 8.16 0.00 38.19 4.17
2229 5050 1.620822 AGTTTGAGTTCATGGCCACC 58.379 50.000 8.16 0.00 0.00 4.61
2230 5051 2.622942 TCAAGTTTGAGTTCATGGCCAC 59.377 45.455 8.16 0.00 32.50 5.01
2231 5052 2.942804 TCAAGTTTGAGTTCATGGCCA 58.057 42.857 8.56 8.56 32.50 5.36
2232 5053 3.367703 CCATCAAGTTTGAGTTCATGGCC 60.368 47.826 0.00 0.00 41.08 5.36
2233 5054 3.841643 CCATCAAGTTTGAGTTCATGGC 58.158 45.455 0.74 0.00 41.08 4.40
2234 5055 3.256383 TGCCATCAAGTTTGAGTTCATGG 59.744 43.478 6.95 6.95 41.08 3.66
2235 5056 4.482386 CTGCCATCAAGTTTGAGTTCATG 58.518 43.478 0.74 0.00 41.08 3.07
2236 5057 3.508793 CCTGCCATCAAGTTTGAGTTCAT 59.491 43.478 0.74 0.00 41.08 2.57
2237 5058 2.886523 CCTGCCATCAAGTTTGAGTTCA 59.113 45.455 0.74 0.00 41.08 3.18
2238 5059 3.149196 TCCTGCCATCAAGTTTGAGTTC 58.851 45.455 0.74 0.00 41.08 3.01
2239 5060 3.152341 CTCCTGCCATCAAGTTTGAGTT 58.848 45.455 0.74 0.00 41.08 3.01
2240 5061 2.553904 CCTCCTGCCATCAAGTTTGAGT 60.554 50.000 0.74 0.00 41.08 3.41
2241 5062 2.089980 CCTCCTGCCATCAAGTTTGAG 58.910 52.381 0.74 0.00 41.08 3.02
2242 5063 1.425066 ACCTCCTGCCATCAAGTTTGA 59.575 47.619 0.00 0.00 42.14 2.69
2243 5064 1.915141 ACCTCCTGCCATCAAGTTTG 58.085 50.000 0.00 0.00 0.00 2.93
2244 5065 2.242043 CAACCTCCTGCCATCAAGTTT 58.758 47.619 0.00 0.00 0.00 2.66
2245 5066 1.915141 CAACCTCCTGCCATCAAGTT 58.085 50.000 0.00 0.00 0.00 2.66
2246 5067 0.610232 GCAACCTCCTGCCATCAAGT 60.610 55.000 0.00 0.00 36.25 3.16
2247 5068 1.651240 CGCAACCTCCTGCCATCAAG 61.651 60.000 0.00 0.00 39.26 3.02
2248 5069 1.675310 CGCAACCTCCTGCCATCAA 60.675 57.895 0.00 0.00 39.26 2.57
2249 5070 2.046023 CGCAACCTCCTGCCATCA 60.046 61.111 0.00 0.00 39.26 3.07
2250 5071 2.825836 CCGCAACCTCCTGCCATC 60.826 66.667 0.00 0.00 39.26 3.51
2261 5082 2.888534 TATTCTCGCGGCCGCAAC 60.889 61.111 45.26 20.83 42.06 4.17
2262 5083 2.888534 GTATTCTCGCGGCCGCAA 60.889 61.111 45.26 33.55 42.06 4.85
2272 5093 2.159421 TCCACTTCACGAGCGTATTCTC 60.159 50.000 0.00 0.00 0.00 2.87
2273 5094 1.816835 TCCACTTCACGAGCGTATTCT 59.183 47.619 0.00 0.00 0.00 2.40
2274 5095 2.159421 TCTCCACTTCACGAGCGTATTC 60.159 50.000 0.00 0.00 0.00 1.75
2275 5096 1.816835 TCTCCACTTCACGAGCGTATT 59.183 47.619 0.00 0.00 0.00 1.89
2276 5097 1.460504 TCTCCACTTCACGAGCGTAT 58.539 50.000 0.00 0.00 0.00 3.06
2277 5098 1.460504 ATCTCCACTTCACGAGCGTA 58.539 50.000 0.00 0.00 0.00 4.42
2278 5099 1.460504 TATCTCCACTTCACGAGCGT 58.539 50.000 0.00 0.00 0.00 5.07
2279 5100 2.159366 ACTTATCTCCACTTCACGAGCG 60.159 50.000 0.00 0.00 0.00 5.03
2280 5101 3.182967 CACTTATCTCCACTTCACGAGC 58.817 50.000 0.00 0.00 0.00 5.03
2281 5102 3.775202 CCACTTATCTCCACTTCACGAG 58.225 50.000 0.00 0.00 0.00 4.18
2282 5103 2.094182 GCCACTTATCTCCACTTCACGA 60.094 50.000 0.00 0.00 0.00 4.35
2283 5104 2.271800 GCCACTTATCTCCACTTCACG 58.728 52.381 0.00 0.00 0.00 4.35
2284 5105 2.094182 TCGCCACTTATCTCCACTTCAC 60.094 50.000 0.00 0.00 0.00 3.18
2285 5106 2.094182 GTCGCCACTTATCTCCACTTCA 60.094 50.000 0.00 0.00 0.00 3.02
2286 5107 2.541556 GTCGCCACTTATCTCCACTTC 58.458 52.381 0.00 0.00 0.00 3.01
2287 5108 1.135083 CGTCGCCACTTATCTCCACTT 60.135 52.381 0.00 0.00 0.00 3.16
2288 5109 0.456221 CGTCGCCACTTATCTCCACT 59.544 55.000 0.00 0.00 0.00 4.00
2289 5110 1.146358 GCGTCGCCACTTATCTCCAC 61.146 60.000 5.75 0.00 0.00 4.02
2290 5111 1.141019 GCGTCGCCACTTATCTCCA 59.859 57.895 5.75 0.00 0.00 3.86
2291 5112 0.459585 TTGCGTCGCCACTTATCTCC 60.460 55.000 15.88 0.00 0.00 3.71
2292 5113 1.571919 ATTGCGTCGCCACTTATCTC 58.428 50.000 15.88 0.00 0.00 2.75
2293 5114 1.665679 CAATTGCGTCGCCACTTATCT 59.334 47.619 15.88 0.00 0.00 1.98
2294 5115 1.268032 CCAATTGCGTCGCCACTTATC 60.268 52.381 15.88 0.00 0.00 1.75
2295 5116 0.732571 CCAATTGCGTCGCCACTTAT 59.267 50.000 15.88 0.00 0.00 1.73
2296 5117 1.302383 CCCAATTGCGTCGCCACTTA 61.302 55.000 15.88 0.00 0.00 2.24
2297 5118 2.625823 CCCAATTGCGTCGCCACTT 61.626 57.895 15.88 2.39 0.00 3.16
2298 5119 3.055719 CCCAATTGCGTCGCCACT 61.056 61.111 15.88 0.00 0.00 4.00
2299 5120 1.933115 ATTCCCAATTGCGTCGCCAC 61.933 55.000 15.88 0.00 0.00 5.01
2300 5121 1.677300 ATTCCCAATTGCGTCGCCA 60.677 52.632 15.88 3.53 0.00 5.69
2301 5122 1.226660 CATTCCCAATTGCGTCGCC 60.227 57.895 15.88 0.00 0.00 5.54
2302 5123 1.226660 CCATTCCCAATTGCGTCGC 60.227 57.895 11.10 11.10 0.00 5.19
2303 5124 1.312371 ACCCATTCCCAATTGCGTCG 61.312 55.000 0.00 0.00 0.00 5.12
2304 5125 0.455815 GACCCATTCCCAATTGCGTC 59.544 55.000 0.00 0.00 0.00 5.19
2305 5126 0.251564 TGACCCATTCCCAATTGCGT 60.252 50.000 0.00 0.00 0.00 5.24
2306 5127 0.457035 CTGACCCATTCCCAATTGCG 59.543 55.000 0.00 0.00 0.00 4.85
2307 5128 0.826062 CCTGACCCATTCCCAATTGC 59.174 55.000 0.00 0.00 0.00 3.56
2308 5129 2.530460 TCCTGACCCATTCCCAATTG 57.470 50.000 0.00 0.00 0.00 2.32
2309 5130 2.315763 ACATCCTGACCCATTCCCAATT 59.684 45.455 0.00 0.00 0.00 2.32
2310 5131 1.932338 ACATCCTGACCCATTCCCAAT 59.068 47.619 0.00 0.00 0.00 3.16
2311 5132 1.381867 ACATCCTGACCCATTCCCAA 58.618 50.000 0.00 0.00 0.00 4.12
2312 5133 2.126882 CTACATCCTGACCCATTCCCA 58.873 52.381 0.00 0.00 0.00 4.37
2313 5134 2.408565 TCTACATCCTGACCCATTCCC 58.591 52.381 0.00 0.00 0.00 3.97
2314 5135 3.711704 TCTTCTACATCCTGACCCATTCC 59.288 47.826 0.00 0.00 0.00 3.01
2315 5136 4.698575 GTCTTCTACATCCTGACCCATTC 58.301 47.826 0.00 0.00 0.00 2.67
2316 5137 3.133003 CGTCTTCTACATCCTGACCCATT 59.867 47.826 0.00 0.00 0.00 3.16
2317 5138 2.695666 CGTCTTCTACATCCTGACCCAT 59.304 50.000 0.00 0.00 0.00 4.00
2318 5139 2.100197 CGTCTTCTACATCCTGACCCA 58.900 52.381 0.00 0.00 0.00 4.51
2319 5140 2.873133 CGTCTTCTACATCCTGACCC 57.127 55.000 0.00 0.00 0.00 4.46


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.