Multiple sequence alignment - TraesCS4B01G073000

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G073000 chr4B 100.000 3086 0 0 1 3086 68126239 68123154 0.000000e+00 5699
1 TraesCS4B01G073000 chr4B 97.231 1264 25 5 1106 2368 68954952 68956206 0.000000e+00 2132
2 TraesCS4B01G073000 chr4B 89.088 1283 80 26 1106 2368 68720671 68721913 0.000000e+00 1539
3 TraesCS4B01G073000 chr4B 88.217 628 49 13 2475 3086 68956206 68956824 0.000000e+00 726
4 TraesCS4B01G073000 chr4B 83.115 610 46 9 2475 3083 68721913 68722466 1.280000e-138 503
5 TraesCS4B01G073000 chr4B 93.581 296 10 3 1100 1395 68701172 68701458 1.700000e-117 433
6 TraesCS4B01G073000 chr4B 94.191 241 7 1 1390 1630 68718803 68719036 8.140000e-96 361
7 TraesCS4B01G073000 chr4B 88.652 282 30 2 124 404 633462726 633463006 2.950000e-90 342
8 TraesCS4B01G073000 chr4B 88.571 280 30 2 130 408 82375147 82375425 3.810000e-89 339
9 TraesCS4B01G073000 chr4B 88.489 278 31 1 128 404 376479128 376479405 4.930000e-88 335
10 TraesCS4B01G073000 chr4B 87.943 282 32 2 124 404 633395596 633395876 6.380000e-87 331
11 TraesCS4B01G073000 chr4B 100.000 108 0 0 2368 2475 575905479 575905372 1.880000e-47 200
12 TraesCS4B01G073000 chr4B 92.708 96 4 3 405 499 522288540 522288633 5.370000e-28 135
13 TraesCS4B01G073000 chr4A 88.838 1299 92 21 1109 2368 551138292 551137008 0.000000e+00 1546
14 TraesCS4B01G073000 chr4A 91.410 1106 59 16 1286 2368 552250469 552251561 0.000000e+00 1483
15 TraesCS4B01G073000 chr4A 90.481 1103 64 11 1294 2368 533466896 533465807 0.000000e+00 1417
16 TraesCS4B01G073000 chr4A 90.199 602 36 10 501 1087 533473645 533473052 0.000000e+00 763
17 TraesCS4B01G073000 chr4A 86.914 619 38 21 2475 3086 533464915 533464333 0.000000e+00 654
18 TraesCS4B01G073000 chr4A 88.051 544 28 18 1669 2187 533465509 533464978 7.320000e-171 610
19 TraesCS4B01G073000 chr4A 87.992 533 36 10 501 1016 552247416 552247937 3.400000e-169 604
20 TraesCS4B01G073000 chr4A 83.725 596 37 15 2475 3065 551137008 551136468 2.750000e-140 508
21 TraesCS4B01G073000 chr4A 91.362 301 18 3 2475 2767 533465807 533465507 3.710000e-109 405
22 TraesCS4B01G073000 chr4A 87.675 357 17 11 2475 2827 552251561 552251894 1.040000e-104 390
23 TraesCS4B01G073000 chr4A 94.194 155 5 1 1109 1259 533472899 533472745 1.850000e-57 233
24 TraesCS4B01G073000 chr4A 100.000 108 0 0 2368 2475 75836012 75835905 1.880000e-47 200
25 TraesCS4B01G073000 chr4A 81.250 128 18 4 1988 2111 556805323 556805448 7.040000e-17 99
26 TraesCS4B01G073000 chr4D 86.858 1324 95 33 1109 2368 46628259 46626951 0.000000e+00 1408
27 TraesCS4B01G073000 chr4D 86.586 1327 99 33 1106 2368 47330239 47331550 0.000000e+00 1391
28 TraesCS4B01G073000 chr4D 88.953 1032 72 23 1106 2111 47322252 47323267 0.000000e+00 1236
29 TraesCS4B01G073000 chr4D 93.031 617 36 4 2475 3086 47323873 47324487 0.000000e+00 894
30 TraesCS4B01G073000 chr4D 83.522 619 34 20 2475 3083 47331550 47332110 1.640000e-142 516
31 TraesCS4B01G073000 chr4D 85.714 357 16 15 2475 2827 46626951 46626626 8.190000e-91 344
32 TraesCS4B01G073000 chr4D 88.971 272 12 6 854 1109 46628630 46628361 1.380000e-83 320
33 TraesCS4B01G073000 chr4D 92.118 203 15 1 501 702 46628896 46628694 5.040000e-73 285
34 TraesCS4B01G073000 chr4D 87.444 223 14 10 2869 3086 46626625 46626412 8.550000e-61 244
35 TraesCS4B01G073000 chr6B 89.493 276 28 1 130 404 588527946 588527671 6.330000e-92 348
36 TraesCS4B01G073000 chr6B 86.538 156 20 1 1 155 35211722 35211877 1.470000e-38 171
37 TraesCS4B01G073000 chr3B 88.298 282 31 2 124 404 816703964 816703684 1.370000e-88 337
38 TraesCS4B01G073000 chr3B 97.500 120 2 1 2371 2489 277752312 277752193 1.450000e-48 204
39 TraesCS4B01G073000 chr3B 85.897 156 21 1 1 155 74509765 74509920 6.850000e-37 165
40 TraesCS4B01G073000 chr3B 92.784 97 6 1 405 501 598973850 598973945 4.150000e-29 139
41 TraesCS4B01G073000 chr2D 81.910 398 65 6 11 404 69358076 69358470 2.290000e-86 329
42 TraesCS4B01G073000 chr2B 88.087 277 32 1 128 403 416209511 416209235 8.250000e-86 327
43 TraesCS4B01G073000 chr2B 87.179 156 19 1 1 155 416209558 416209403 3.160000e-40 176
44 TraesCS4B01G073000 chr2B 92.784 97 6 1 405 501 408431046 408431141 4.150000e-29 139
45 TraesCS4B01G073000 chr5D 80.788 406 64 8 1 404 407553700 407553307 3.870000e-79 305
46 TraesCS4B01G073000 chr5D 92.929 99 5 2 407 504 436255405 436255502 3.210000e-30 143
47 TraesCS4B01G073000 chr2A 100.000 109 0 0 2368 2476 649490125 649490017 5.220000e-48 202
48 TraesCS4B01G073000 chr5B 100.000 108 0 0 2368 2475 403717846 403717739 1.880000e-47 200
49 TraesCS4B01G073000 chr5B 87.179 156 19 1 1 155 549085135 549084980 3.160000e-40 176
50 TraesCS4B01G073000 chr5A 100.000 108 0 0 2368 2475 13889509 13889616 1.880000e-47 200
51 TraesCS4B01G073000 chr5A 100.000 108 0 0 2368 2475 596662241 596662348 1.880000e-47 200
52 TraesCS4B01G073000 chr5A 93.939 99 3 3 405 502 595103779 595103875 2.480000e-31 147
53 TraesCS4B01G073000 chr3A 99.107 112 0 1 2368 2479 555313528 555313418 1.880000e-47 200
54 TraesCS4B01G073000 chr3A 90.099 101 7 3 401 501 715942433 715942530 8.980000e-26 128
55 TraesCS4B01G073000 chr6A 98.214 112 2 0 2368 2479 9365998 9366109 2.430000e-46 196
56 TraesCS4B01G073000 chr6A 91.753 97 7 1 405 501 542233680 542233585 1.930000e-27 134
57 TraesCS4B01G073000 chr7B 89.103 156 16 1 1 155 326919955 326919800 3.140000e-45 193
58 TraesCS4B01G073000 chr1B 89.116 147 16 0 2 148 232959147 232959001 1.890000e-42 183
59 TraesCS4B01G073000 chr1B 85.350 157 20 3 1 155 225503124 225503279 3.190000e-35 159
60 TraesCS4B01G073000 chr7A 93.069 101 5 2 405 505 602238947 602238849 2.480000e-31 147
61 TraesCS4B01G073000 chr1A 90.722 97 8 1 405 501 100084927 100085022 8.980000e-26 128


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G073000 chr4B 68123154 68126239 3085 True 5699.000000 5699 100.000000 1 3086 1 chr4B.!!$R1 3085
1 TraesCS4B01G073000 chr4B 68954952 68956824 1872 False 1429.000000 2132 92.724000 1106 3086 2 chr4B.!!$F8 1980
2 TraesCS4B01G073000 chr4B 68718803 68722466 3663 False 801.000000 1539 88.798000 1106 3083 3 chr4B.!!$F7 1977
3 TraesCS4B01G073000 chr4A 551136468 551138292 1824 True 1027.000000 1546 86.281500 1109 3065 2 chr4A.!!$R4 1956
4 TraesCS4B01G073000 chr4A 552247416 552251894 4478 False 825.666667 1483 89.025667 501 2827 3 chr4A.!!$F2 2326
5 TraesCS4B01G073000 chr4A 533464333 533466896 2563 True 771.500000 1417 89.202000 1294 3086 4 chr4A.!!$R2 1792
6 TraesCS4B01G073000 chr4A 533472745 533473645 900 True 498.000000 763 92.196500 501 1259 2 chr4A.!!$R3 758
7 TraesCS4B01G073000 chr4D 47322252 47324487 2235 False 1065.000000 1236 90.992000 1106 3086 2 chr4D.!!$F1 1980
8 TraesCS4B01G073000 chr4D 47330239 47332110 1871 False 953.500000 1391 85.054000 1106 3083 2 chr4D.!!$F2 1977
9 TraesCS4B01G073000 chr4D 46626412 46628896 2484 True 520.200000 1408 88.221000 501 3086 5 chr4D.!!$R1 2585

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
263 264 0.037326 TCTTTACCGTCTGCCAGCAG 60.037 55.0 13.54 13.54 44.86 4.24 F
413 414 0.313987 TCCTGTAGTGCACACGTGAG 59.686 55.0 25.01 16.59 36.20 3.51 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2034 5168 3.186702 TCGAGTTGAACACATGAACCA 57.813 42.857 0.0 0.0 0.00 3.67 R
2386 5987 0.177141 TGGGTCTATTGTACGCAGCC 59.823 55.000 0.0 0.0 35.18 4.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 0.662619 TTTGGCAGCTTTGTCGTCAG 59.337 50.000 0.00 0.00 0.00 3.51
22 23 1.785041 TTGGCAGCTTTGTCGTCAGC 61.785 55.000 0.00 0.00 0.00 4.26
23 24 1.963338 GGCAGCTTTGTCGTCAGCT 60.963 57.895 0.00 0.00 38.25 4.24
25 26 4.368391 AGCTTTGTCGTCAGCTGG 57.632 55.556 15.13 0.00 36.15 4.85
27 28 1.963338 GCTTTGTCGTCAGCTGGCT 60.963 57.895 17.70 0.00 0.00 4.75
39 40 3.257933 CTGGCTGACGGCAAAGAC 58.742 61.111 8.86 0.00 45.84 3.01
40 41 2.281484 TGGCTGACGGCAAAGACC 60.281 61.111 8.86 0.00 43.40 3.85
41 42 2.032681 GGCTGACGGCAAAGACCT 59.967 61.111 8.86 0.00 44.01 3.85
42 43 1.600916 GGCTGACGGCAAAGACCTT 60.601 57.895 8.86 0.00 44.01 3.50
43 44 1.172812 GGCTGACGGCAAAGACCTTT 61.173 55.000 8.86 0.00 44.01 3.11
63 64 3.859650 CAACTTTGCTGTCAGCCAG 57.140 52.632 21.99 18.69 41.51 4.85
77 78 2.979676 CCAGCTGACGGCAAAGCA 60.980 61.111 17.39 0.00 44.79 3.91
78 79 2.338015 CCAGCTGACGGCAAAGCAT 61.338 57.895 17.39 0.00 44.79 3.79
79 80 1.154093 CAGCTGACGGCAAAGCATG 60.154 57.895 8.42 0.00 44.79 4.06
90 91 1.708822 CAAAGCATGCCGTTAAACCC 58.291 50.000 15.66 0.00 0.00 4.11
92 93 1.627864 AAGCATGCCGTTAAACCCTT 58.372 45.000 15.66 0.00 0.00 3.95
94 95 2.797786 AGCATGCCGTTAAACCCTTAA 58.202 42.857 15.66 0.00 0.00 1.85
95 96 2.490509 AGCATGCCGTTAAACCCTTAAC 59.509 45.455 15.66 0.00 42.34 2.01
108 109 1.021968 CCTTAACGGGCCTAATGTGC 58.978 55.000 0.84 0.00 0.00 4.57
115 116 2.485122 GCCTAATGTGCCACGTGC 59.515 61.111 10.91 6.53 41.77 5.34
144 145 1.700600 GCTCTTTGCCGTCTGCTAGC 61.701 60.000 8.10 8.10 42.00 3.42
145 146 0.108424 CTCTTTGCCGTCTGCTAGCT 60.108 55.000 17.23 0.00 42.00 3.32
146 147 0.390340 TCTTTGCCGTCTGCTAGCTG 60.390 55.000 17.23 16.05 42.00 4.24
147 148 0.390340 CTTTGCCGTCTGCTAGCTGA 60.390 55.000 19.26 19.26 42.00 4.26
152 153 4.578913 GTCTGCTAGCTGACGCAA 57.421 55.556 30.98 7.33 39.10 4.85
156 157 3.566261 GCTAGCTGACGCAAAGCA 58.434 55.556 7.70 0.00 43.12 3.91
157 158 1.133458 GCTAGCTGACGCAAAGCAC 59.867 57.895 7.70 0.00 43.12 4.40
158 159 1.417592 CTAGCTGACGCAAAGCACG 59.582 57.895 0.00 0.00 43.37 5.34
159 160 2.554365 CTAGCTGACGCAAAGCACGC 62.554 60.000 0.00 0.00 43.37 5.34
163 164 4.719616 GACGCAAAGCACGCCGTC 62.720 66.667 0.00 3.46 42.39 4.79
165 166 4.306471 CGCAAAGCACGCCGTCAA 62.306 61.111 0.00 0.00 0.00 3.18
166 167 2.025441 GCAAAGCACGCCGTCAAA 59.975 55.556 0.00 0.00 0.00 2.69
167 168 2.292916 GCAAAGCACGCCGTCAAAC 61.293 57.895 0.00 0.00 0.00 2.93
168 169 1.657181 CAAAGCACGCCGTCAAACC 60.657 57.895 0.00 0.00 0.00 3.27
169 170 2.841160 AAAGCACGCCGTCAAACCC 61.841 57.895 0.00 0.00 0.00 4.11
170 171 3.767630 AAGCACGCCGTCAAACCCT 62.768 57.895 0.00 0.00 0.00 4.34
171 172 3.284449 GCACGCCGTCAAACCCTT 61.284 61.111 0.00 0.00 0.00 3.95
172 173 1.962306 GCACGCCGTCAAACCCTTA 60.962 57.895 0.00 0.00 0.00 2.69
173 174 1.508808 GCACGCCGTCAAACCCTTAA 61.509 55.000 0.00 0.00 0.00 1.85
174 175 0.236449 CACGCCGTCAAACCCTTAAC 59.764 55.000 0.00 0.00 0.00 2.01
187 188 1.021968 CCTTAACGGGCCTAATGTGC 58.978 55.000 0.84 0.00 0.00 4.57
194 195 2.485122 GCCTAATGTGCCACGTGC 59.515 61.111 10.91 6.53 41.77 5.34
195 196 2.784596 CCTAATGTGCCACGTGCG 59.215 61.111 10.91 4.74 45.60 5.34
221 222 4.361253 GCTCTTTGCCGTCTGTCA 57.639 55.556 0.00 0.00 35.15 3.58
222 223 2.157421 GCTCTTTGCCGTCTGTCAG 58.843 57.895 0.00 0.00 35.15 3.51
223 224 1.905922 GCTCTTTGCCGTCTGTCAGC 61.906 60.000 0.00 0.00 35.15 4.26
224 225 1.621301 CTCTTTGCCGTCTGTCAGCG 61.621 60.000 8.99 8.99 0.00 5.18
235 236 3.550656 GTCAGCGGACGACAAAGG 58.449 61.111 0.00 0.00 33.68 3.11
236 237 2.357034 TCAGCGGACGACAAAGGC 60.357 61.111 0.00 0.00 0.00 4.35
239 240 2.668550 GCGGACGACAAAGGCCTT 60.669 61.111 13.78 13.78 37.08 4.35
240 241 2.258726 GCGGACGACAAAGGCCTTT 61.259 57.895 25.47 25.47 37.08 3.11
251 252 3.588955 CAAAGGCCTTTGCATCTTTACC 58.411 45.455 38.12 0.00 42.66 2.85
252 253 1.463674 AGGCCTTTGCATCTTTACCG 58.536 50.000 0.00 0.00 40.13 4.02
253 254 1.173913 GGCCTTTGCATCTTTACCGT 58.826 50.000 0.00 0.00 40.13 4.83
255 256 2.084546 GCCTTTGCATCTTTACCGTCT 58.915 47.619 0.00 0.00 37.47 4.18
256 257 2.159517 GCCTTTGCATCTTTACCGTCTG 60.160 50.000 0.00 0.00 37.47 3.51
257 258 2.159517 CCTTTGCATCTTTACCGTCTGC 60.160 50.000 0.00 0.00 0.00 4.26
258 259 1.448985 TTGCATCTTTACCGTCTGCC 58.551 50.000 0.00 0.00 31.89 4.85
259 260 0.323302 TGCATCTTTACCGTCTGCCA 59.677 50.000 0.00 0.00 31.89 4.92
260 261 1.009829 GCATCTTTACCGTCTGCCAG 58.990 55.000 0.00 0.00 0.00 4.85
261 262 1.009829 CATCTTTACCGTCTGCCAGC 58.990 55.000 0.00 0.00 0.00 4.85
262 263 0.613260 ATCTTTACCGTCTGCCAGCA 59.387 50.000 0.00 0.00 0.00 4.41
263 264 0.037326 TCTTTACCGTCTGCCAGCAG 60.037 55.000 13.54 13.54 44.86 4.24
270 271 3.137687 TCTGCCAGCAGACGACAA 58.862 55.556 18.14 0.00 46.80 3.18
271 272 1.445518 TCTGCCAGCAGACGACAAA 59.554 52.632 18.14 0.00 46.80 2.83
272 273 0.601046 TCTGCCAGCAGACGACAAAG 60.601 55.000 18.14 0.00 46.80 2.77
273 274 0.601046 CTGCCAGCAGACGACAAAGA 60.601 55.000 14.54 0.00 46.30 2.52
274 275 0.601046 TGCCAGCAGACGACAAAGAG 60.601 55.000 0.00 0.00 0.00 2.85
276 277 0.671781 CCAGCAGACGACAAAGAGGG 60.672 60.000 0.00 0.00 0.00 4.30
277 278 1.004440 AGCAGACGACAAAGAGGGC 60.004 57.895 0.00 0.00 0.00 5.19
278 279 1.004440 GCAGACGACAAAGAGGGCT 60.004 57.895 0.00 0.00 0.00 5.19
279 280 0.603975 GCAGACGACAAAGAGGGCTT 60.604 55.000 0.00 0.00 35.37 4.35
280 281 1.884235 CAGACGACAAAGAGGGCTTT 58.116 50.000 0.00 0.00 44.93 3.51
288 289 1.809684 AAAGAGGGCTTTGTCGTAGC 58.190 50.000 0.00 0.00 42.54 3.58
295 296 1.508632 GCTTTGTCGTAGCCTGTTCA 58.491 50.000 0.00 0.00 32.45 3.18
296 297 1.461127 GCTTTGTCGTAGCCTGTTCAG 59.539 52.381 0.00 0.00 32.45 3.02
297 298 1.461127 CTTTGTCGTAGCCTGTTCAGC 59.539 52.381 0.00 0.00 0.00 4.26
298 299 0.320421 TTGTCGTAGCCTGTTCAGCC 60.320 55.000 0.00 0.00 0.00 4.85
299 300 1.805945 GTCGTAGCCTGTTCAGCCG 60.806 63.158 0.00 0.00 0.00 5.52
301 302 2.978824 GTAGCCTGTTCAGCCGGA 59.021 61.111 5.05 0.00 0.00 5.14
302 303 1.522569 GTAGCCTGTTCAGCCGGAT 59.477 57.895 5.05 0.00 0.00 4.18
303 304 0.811616 GTAGCCTGTTCAGCCGGATG 60.812 60.000 15.12 15.12 0.00 3.51
304 305 1.264749 TAGCCTGTTCAGCCGGATGT 61.265 55.000 20.97 0.00 0.00 3.06
305 306 2.401766 GCCTGTTCAGCCGGATGTG 61.402 63.158 20.97 6.05 0.00 3.21
307 308 0.606401 CCTGTTCAGCCGGATGTGTT 60.606 55.000 20.97 0.00 0.00 3.32
309 310 1.210155 GTTCAGCCGGATGTGTTGC 59.790 57.895 20.97 2.93 0.00 4.17
311 312 2.672651 CAGCCGGATGTGTTGCCA 60.673 61.111 12.68 0.00 0.00 4.92
312 313 2.048023 CAGCCGGATGTGTTGCCAT 61.048 57.895 12.68 0.00 0.00 4.40
313 314 1.750399 AGCCGGATGTGTTGCCATC 60.750 57.895 5.05 0.00 40.43 3.51
314 315 1.750399 GCCGGATGTGTTGCCATCT 60.750 57.895 5.05 0.00 40.85 2.90
317 318 1.028330 CGGATGTGTTGCCATCTGCT 61.028 55.000 0.00 0.00 40.35 4.24
318 319 0.454600 GGATGTGTTGCCATCTGCTG 59.545 55.000 0.00 0.00 40.85 4.41
326 327 4.131376 CCATCTGCTGGCTAACGG 57.869 61.111 0.00 0.00 38.47 4.44
359 360 4.365111 TCCGCCAGGCATGCCTTT 62.365 61.111 36.92 15.44 45.70 3.11
360 361 4.137872 CCGCCAGGCATGCCTTTG 62.138 66.667 36.92 29.01 45.70 2.77
361 362 4.807039 CGCCAGGCATGCCTTTGC 62.807 66.667 36.92 34.95 45.70 3.68
367 368 2.180017 GCATGCCTTTGCCGTCAG 59.820 61.111 6.36 0.00 36.60 3.51
368 369 2.180017 CATGCCTTTGCCGTCAGC 59.820 61.111 0.00 0.00 44.14 4.26
369 370 3.064324 ATGCCTTTGCCGTCAGCC 61.064 61.111 0.00 0.00 42.71 4.85
370 371 3.866379 ATGCCTTTGCCGTCAGCCA 62.866 57.895 0.00 0.00 42.71 4.75
371 372 3.064324 GCCTTTGCCGTCAGCCAT 61.064 61.111 0.00 0.00 42.71 4.40
373 374 2.703798 CCTTTGCCGTCAGCCATGG 61.704 63.158 7.63 7.63 42.71 3.66
388 389 3.286751 TGGCTGACGGCAAAGTGC 61.287 61.111 8.86 0.00 43.40 4.40
399 400 1.251251 GCAAAGTGCCTGATTCCTGT 58.749 50.000 0.00 0.00 37.42 4.00
400 401 2.436417 GCAAAGTGCCTGATTCCTGTA 58.564 47.619 0.00 0.00 37.42 2.74
401 402 2.421424 GCAAAGTGCCTGATTCCTGTAG 59.579 50.000 0.00 0.00 37.42 2.74
402 403 3.679389 CAAAGTGCCTGATTCCTGTAGT 58.321 45.455 0.00 0.00 0.00 2.73
404 405 1.065854 AGTGCCTGATTCCTGTAGTGC 60.066 52.381 0.00 0.00 0.00 4.40
405 406 0.983467 TGCCTGATTCCTGTAGTGCA 59.017 50.000 0.00 0.00 0.00 4.57
406 407 1.339055 TGCCTGATTCCTGTAGTGCAC 60.339 52.381 9.40 9.40 0.00 4.57
407 408 1.339055 GCCTGATTCCTGTAGTGCACA 60.339 52.381 21.04 1.84 35.30 4.57
408 409 2.350522 CCTGATTCCTGTAGTGCACAC 58.649 52.381 21.04 15.19 32.33 3.82
410 411 1.343142 TGATTCCTGTAGTGCACACGT 59.657 47.619 21.04 0.05 36.20 4.49
411 412 1.726791 GATTCCTGTAGTGCACACGTG 59.273 52.381 21.04 15.48 36.20 4.49
412 413 0.747852 TTCCTGTAGTGCACACGTGA 59.252 50.000 25.01 11.88 36.20 4.35
413 414 0.313987 TCCTGTAGTGCACACGTGAG 59.686 55.000 25.01 16.59 36.20 3.51
414 415 0.667487 CCTGTAGTGCACACGTGAGG 60.667 60.000 25.01 14.89 36.20 3.86
415 416 0.313987 CTGTAGTGCACACGTGAGGA 59.686 55.000 25.01 13.79 36.20 3.71
416 417 0.313987 TGTAGTGCACACGTGAGGAG 59.686 55.000 25.01 9.97 36.20 3.69
417 418 0.388649 GTAGTGCACACGTGAGGAGG 60.389 60.000 25.01 7.04 36.20 4.30
419 420 1.373497 GTGCACACGTGAGGAGGAG 60.373 63.158 25.01 3.83 0.00 3.69
420 421 1.832608 TGCACACGTGAGGAGGAGT 60.833 57.895 25.01 0.00 0.00 3.85
421 422 1.373497 GCACACGTGAGGAGGAGTG 60.373 63.158 25.01 8.43 40.17 3.51
422 423 4.601042 ACACGTGAGGAGGAGTGT 57.399 55.556 25.01 0.00 42.26 3.55
423 424 0.389391 CACACGTGAGGAGGAGTGTT 59.611 55.000 25.01 0.00 44.32 3.32
425 426 0.673985 CACGTGAGGAGGAGTGTTGA 59.326 55.000 10.90 0.00 0.00 3.18
426 427 0.674534 ACGTGAGGAGGAGTGTTGAC 59.325 55.000 0.00 0.00 0.00 3.18
427 428 0.387367 CGTGAGGAGGAGTGTTGACG 60.387 60.000 0.00 0.00 0.00 4.35
428 429 0.674534 GTGAGGAGGAGTGTTGACGT 59.325 55.000 0.00 0.00 0.00 4.34
429 430 1.884579 GTGAGGAGGAGTGTTGACGTA 59.115 52.381 0.00 0.00 0.00 3.57
430 431 2.492484 GTGAGGAGGAGTGTTGACGTAT 59.508 50.000 0.00 0.00 0.00 3.06
431 432 3.693085 GTGAGGAGGAGTGTTGACGTATA 59.307 47.826 0.00 0.00 0.00 1.47
432 433 4.157289 GTGAGGAGGAGTGTTGACGTATAA 59.843 45.833 0.00 0.00 0.00 0.98
433 434 4.954202 TGAGGAGGAGTGTTGACGTATAAT 59.046 41.667 0.00 0.00 0.00 1.28
434 435 5.421056 TGAGGAGGAGTGTTGACGTATAATT 59.579 40.000 0.00 0.00 0.00 1.40
435 436 5.661458 AGGAGGAGTGTTGACGTATAATTG 58.339 41.667 0.00 0.00 0.00 2.32
436 437 5.187186 AGGAGGAGTGTTGACGTATAATTGT 59.813 40.000 0.00 0.00 0.00 2.71
437 438 5.291128 GGAGGAGTGTTGACGTATAATTGTG 59.709 44.000 0.00 0.00 0.00 3.33
439 440 6.228258 AGGAGTGTTGACGTATAATTGTGTT 58.772 36.000 0.00 0.00 0.00 3.32
440 441 6.147164 AGGAGTGTTGACGTATAATTGTGTTG 59.853 38.462 0.00 0.00 0.00 3.33
442 443 4.849383 GTGTTGACGTATAATTGTGTTGCC 59.151 41.667 0.00 0.00 0.00 4.52
444 445 5.932883 TGTTGACGTATAATTGTGTTGCCTA 59.067 36.000 0.00 0.00 0.00 3.93
445 446 6.091577 TGTTGACGTATAATTGTGTTGCCTAG 59.908 38.462 0.00 0.00 0.00 3.02
446 447 5.726397 TGACGTATAATTGTGTTGCCTAGT 58.274 37.500 0.00 0.00 0.00 2.57
447 448 5.808540 TGACGTATAATTGTGTTGCCTAGTC 59.191 40.000 0.00 0.00 0.00 2.59
448 449 5.974108 ACGTATAATTGTGTTGCCTAGTCT 58.026 37.500 0.00 0.00 0.00 3.24
449 450 6.040878 ACGTATAATTGTGTTGCCTAGTCTC 58.959 40.000 0.00 0.00 0.00 3.36
450 451 6.127423 ACGTATAATTGTGTTGCCTAGTCTCT 60.127 38.462 0.00 0.00 0.00 3.10
451 452 6.757010 CGTATAATTGTGTTGCCTAGTCTCTT 59.243 38.462 0.00 0.00 0.00 2.85
452 453 7.277981 CGTATAATTGTGTTGCCTAGTCTCTTT 59.722 37.037 0.00 0.00 0.00 2.52
455 456 4.623932 TGTGTTGCCTAGTCTCTTTCAT 57.376 40.909 0.00 0.00 0.00 2.57
456 457 4.569943 TGTGTTGCCTAGTCTCTTTCATC 58.430 43.478 0.00 0.00 0.00 2.92
457 458 4.040339 TGTGTTGCCTAGTCTCTTTCATCA 59.960 41.667 0.00 0.00 0.00 3.07
459 460 4.528206 TGTTGCCTAGTCTCTTTCATCAGA 59.472 41.667 0.00 0.00 0.00 3.27
460 461 5.188555 TGTTGCCTAGTCTCTTTCATCAGAT 59.811 40.000 0.00 0.00 0.00 2.90
462 463 4.037327 TGCCTAGTCTCTTTCATCAGATCG 59.963 45.833 0.00 0.00 0.00 3.69
463 464 4.277174 GCCTAGTCTCTTTCATCAGATCGA 59.723 45.833 0.00 0.00 0.00 3.59
464 465 5.562696 GCCTAGTCTCTTTCATCAGATCGAG 60.563 48.000 0.00 0.00 0.00 4.04
466 467 3.953612 AGTCTCTTTCATCAGATCGAGCT 59.046 43.478 0.00 0.00 0.00 4.09
467 468 4.402155 AGTCTCTTTCATCAGATCGAGCTT 59.598 41.667 0.00 0.00 0.00 3.74
468 469 5.105392 AGTCTCTTTCATCAGATCGAGCTTT 60.105 40.000 0.00 0.00 0.00 3.51
469 470 5.580297 GTCTCTTTCATCAGATCGAGCTTTT 59.420 40.000 0.00 0.00 0.00 2.27
471 472 6.091849 TCTCTTTCATCAGATCGAGCTTTTTG 59.908 38.462 0.00 0.00 0.00 2.44
473 474 5.947228 TTCATCAGATCGAGCTTTTTGTT 57.053 34.783 0.00 0.00 0.00 2.83
474 475 5.287170 TCATCAGATCGAGCTTTTTGTTG 57.713 39.130 0.00 0.00 0.00 3.33
475 476 3.542712 TCAGATCGAGCTTTTTGTTGC 57.457 42.857 0.00 0.00 0.00 4.17
476 477 2.877786 TCAGATCGAGCTTTTTGTTGCA 59.122 40.909 0.00 0.00 0.00 4.08
477 478 3.503363 TCAGATCGAGCTTTTTGTTGCAT 59.497 39.130 0.00 0.00 0.00 3.96
478 479 4.022935 TCAGATCGAGCTTTTTGTTGCATT 60.023 37.500 0.00 0.00 0.00 3.56
480 481 5.510674 CAGATCGAGCTTTTTGTTGCATTAG 59.489 40.000 0.00 0.00 0.00 1.73
481 482 3.564511 TCGAGCTTTTTGTTGCATTAGC 58.435 40.909 0.00 0.00 42.57 3.09
482 483 3.253188 TCGAGCTTTTTGTTGCATTAGCT 59.747 39.130 0.00 0.00 41.31 3.32
484 485 4.790140 CGAGCTTTTTGTTGCATTAGCTAG 59.210 41.667 0.00 0.00 38.94 3.42
485 486 5.390885 CGAGCTTTTTGTTGCATTAGCTAGA 60.391 40.000 0.00 0.00 38.94 2.43
486 487 5.947443 AGCTTTTTGTTGCATTAGCTAGAG 58.053 37.500 0.00 0.00 42.74 2.43
487 488 4.560427 GCTTTTTGTTGCATTAGCTAGAGC 59.440 41.667 11.35 11.35 42.74 4.09
490 491 4.888038 TTGTTGCATTAGCTAGAGCATG 57.112 40.909 18.96 10.10 45.16 4.06
491 492 2.615447 TGTTGCATTAGCTAGAGCATGC 59.385 45.455 18.96 18.24 45.25 4.06
493 494 2.965477 GCATTAGCTAGAGCATGCAC 57.035 50.000 21.98 14.59 44.74 4.57
494 495 2.492012 GCATTAGCTAGAGCATGCACT 58.508 47.619 21.45 21.45 44.74 4.40
495 496 2.877168 GCATTAGCTAGAGCATGCACTT 59.123 45.455 22.83 7.95 44.74 3.16
496 497 3.059051 GCATTAGCTAGAGCATGCACTTC 60.059 47.826 22.83 14.51 44.74 3.01
497 498 4.378774 CATTAGCTAGAGCATGCACTTCT 58.621 43.478 22.83 20.02 45.16 2.85
565 566 2.445682 AGGGAGTGAGCGAATAGACT 57.554 50.000 0.00 0.00 0.00 3.24
680 682 3.336715 CTGCCGACGTGTCCATCGA 62.337 63.158 0.00 0.00 40.86 3.59
697 699 1.255667 CGAACGGGGAAGAGGAGGAA 61.256 60.000 0.00 0.00 0.00 3.36
713 715 1.183549 GGAAGACCTAGAAGGCGACA 58.816 55.000 0.00 0.00 39.63 4.35
902 905 1.945580 TATGTGACAGTGTAGGCCCA 58.054 50.000 0.00 0.00 0.00 5.36
903 906 1.289160 ATGTGACAGTGTAGGCCCAT 58.711 50.000 0.00 0.00 0.00 4.00
1090 1109 4.534500 TCTGAGCACTTACCAATTTCCCTA 59.466 41.667 0.00 0.00 0.00 3.53
1095 1114 4.822350 GCACTTACCAATTTCCCTATCCTC 59.178 45.833 0.00 0.00 0.00 3.71
1096 1115 5.631481 GCACTTACCAATTTCCCTATCCTCA 60.631 44.000 0.00 0.00 0.00 3.86
1097 1116 6.058183 CACTTACCAATTTCCCTATCCTCAG 58.942 44.000 0.00 0.00 0.00 3.35
1296 4329 1.872237 CGAACGGCTCTTTCACCTTCA 60.872 52.381 0.00 0.00 0.00 3.02
1986 5109 3.459969 AGTTCCTCCTCTGGTTGTCTTTT 59.540 43.478 0.00 0.00 0.00 2.27
2034 5168 3.511934 CCTGTTAGGCTGTTACAGAGTCT 59.488 47.826 17.40 11.70 41.33 3.24
2283 5882 2.590007 CGGGATGCAGTGCCTAGC 60.590 66.667 13.72 0.00 35.88 3.42
2318 5917 7.763528 GGCTAGTGATTCTGGTCTATATGATTG 59.236 40.741 0.00 0.00 0.00 2.67
2387 5988 7.703058 AATGTTACAGAAATGTAGGGAAAGG 57.297 36.000 0.00 0.00 0.00 3.11
2388 5989 5.007682 TGTTACAGAAATGTAGGGAAAGGC 58.992 41.667 0.00 0.00 0.00 4.35
2389 5990 5.222048 TGTTACAGAAATGTAGGGAAAGGCT 60.222 40.000 0.00 0.00 0.00 4.58
2390 5991 3.690460 ACAGAAATGTAGGGAAAGGCTG 58.310 45.455 0.00 0.00 0.00 4.85
2391 5992 2.424956 CAGAAATGTAGGGAAAGGCTGC 59.575 50.000 0.00 0.00 0.00 5.25
2392 5993 1.401905 GAAATGTAGGGAAAGGCTGCG 59.598 52.381 0.00 0.00 0.00 5.18
2393 5994 0.328258 AATGTAGGGAAAGGCTGCGT 59.672 50.000 0.00 0.00 0.00 5.24
2394 5995 1.200519 ATGTAGGGAAAGGCTGCGTA 58.799 50.000 0.00 0.00 0.00 4.42
2395 5996 0.248289 TGTAGGGAAAGGCTGCGTAC 59.752 55.000 0.00 0.00 37.28 3.67
2396 5997 0.248289 GTAGGGAAAGGCTGCGTACA 59.752 55.000 0.00 0.00 36.89 2.90
2397 5998 0.978151 TAGGGAAAGGCTGCGTACAA 59.022 50.000 0.00 0.00 0.00 2.41
2398 5999 0.328258 AGGGAAAGGCTGCGTACAAT 59.672 50.000 0.00 0.00 0.00 2.71
2399 6000 1.557832 AGGGAAAGGCTGCGTACAATA 59.442 47.619 0.00 0.00 0.00 1.90
2400 6001 1.940613 GGGAAAGGCTGCGTACAATAG 59.059 52.381 0.00 0.00 0.00 1.73
2401 6002 2.419574 GGGAAAGGCTGCGTACAATAGA 60.420 50.000 0.00 0.00 0.00 1.98
2402 6003 2.608090 GGAAAGGCTGCGTACAATAGAC 59.392 50.000 0.00 0.00 0.00 2.59
2403 6004 2.311124 AAGGCTGCGTACAATAGACC 57.689 50.000 0.00 0.00 0.00 3.85
2404 6005 0.464452 AGGCTGCGTACAATAGACCC 59.536 55.000 0.00 0.00 0.00 4.46
2405 6006 0.177141 GGCTGCGTACAATAGACCCA 59.823 55.000 0.00 0.00 0.00 4.51
2406 6007 1.406341 GGCTGCGTACAATAGACCCAA 60.406 52.381 0.00 0.00 0.00 4.12
2407 6008 2.352388 GCTGCGTACAATAGACCCAAA 58.648 47.619 0.00 0.00 0.00 3.28
2408 6009 2.351726 GCTGCGTACAATAGACCCAAAG 59.648 50.000 0.00 0.00 0.00 2.77
2409 6010 3.596214 CTGCGTACAATAGACCCAAAGT 58.404 45.455 0.00 0.00 0.00 2.66
2410 6011 3.331150 TGCGTACAATAGACCCAAAGTG 58.669 45.455 0.00 0.00 0.00 3.16
2411 6012 2.676342 GCGTACAATAGACCCAAAGTGG 59.324 50.000 0.00 0.00 37.25 4.00
2412 6013 3.867216 GCGTACAATAGACCCAAAGTGGT 60.867 47.826 0.00 0.00 42.79 4.16
2417 6018 4.373771 GACCCAAAGTGGTCGGAC 57.626 61.111 0.00 0.00 44.98 4.79
2418 6019 1.302271 GACCCAAAGTGGTCGGACC 60.302 63.158 20.36 20.36 44.98 4.46
2419 6020 2.033602 CCCAAAGTGGTCGGACCC 59.966 66.667 23.81 14.91 37.50 4.46
2420 6021 2.526046 CCCAAAGTGGTCGGACCCT 61.526 63.158 23.81 16.82 37.50 4.34
2421 6022 1.454539 CCAAAGTGGTCGGACCCTT 59.545 57.895 23.81 21.08 37.50 3.95
2422 6023 0.605589 CCAAAGTGGTCGGACCCTTC 60.606 60.000 23.81 13.97 37.50 3.46
2423 6024 0.605589 CAAAGTGGTCGGACCCTTCC 60.606 60.000 23.81 9.51 37.50 3.46
2424 6025 1.775934 AAAGTGGTCGGACCCTTCCC 61.776 60.000 23.81 7.17 38.99 3.97
2425 6026 3.714001 GTGGTCGGACCCTTCCCC 61.714 72.222 23.81 0.00 38.99 4.81
2426 6027 4.257810 TGGTCGGACCCTTCCCCA 62.258 66.667 23.81 0.69 38.99 4.96
2427 6028 3.400054 GGTCGGACCCTTCCCCAG 61.400 72.222 16.55 0.00 38.99 4.45
2428 6029 2.284405 GTCGGACCCTTCCCCAGA 60.284 66.667 0.00 0.00 38.99 3.86
2429 6030 2.284405 TCGGACCCTTCCCCAGAC 60.284 66.667 0.00 0.00 38.99 3.51
2430 6031 3.400054 CGGACCCTTCCCCAGACC 61.400 72.222 0.00 0.00 38.99 3.85
2431 6032 3.015753 GGACCCTTCCCCAGACCC 61.016 72.222 0.00 0.00 35.57 4.46
2432 6033 2.125225 GACCCTTCCCCAGACCCT 59.875 66.667 0.00 0.00 0.00 4.34
2433 6034 2.204151 ACCCTTCCCCAGACCCTG 60.204 66.667 0.00 0.00 0.00 4.45
2434 6035 3.732849 CCCTTCCCCAGACCCTGC 61.733 72.222 0.00 0.00 0.00 4.85
2435 6036 4.101448 CCTTCCCCAGACCCTGCG 62.101 72.222 0.00 0.00 0.00 5.18
2436 6037 4.785453 CTTCCCCAGACCCTGCGC 62.785 72.222 0.00 0.00 0.00 6.09
2457 6058 4.115279 CGGGAGCTACATGCACTG 57.885 61.111 0.00 0.00 45.94 3.66
2458 6059 1.522355 CGGGAGCTACATGCACTGG 60.522 63.158 0.00 0.00 45.94 4.00
2459 6060 1.153086 GGGAGCTACATGCACTGGG 60.153 63.158 0.00 0.00 45.94 4.45
2460 6061 1.153086 GGAGCTACATGCACTGGGG 60.153 63.158 0.00 0.00 45.94 4.96
2461 6062 1.821332 GAGCTACATGCACTGGGGC 60.821 63.158 0.00 0.00 45.94 5.80
2462 6063 2.262774 GAGCTACATGCACTGGGGCT 62.263 60.000 13.29 13.29 45.94 5.19
2463 6064 2.117156 GCTACATGCACTGGGGCTG 61.117 63.158 0.00 0.00 42.31 4.85
2464 6065 2.045045 TACATGCACTGGGGCTGC 60.045 61.111 0.00 0.00 35.03 5.25
2465 6066 3.643595 TACATGCACTGGGGCTGCC 62.644 63.158 11.05 11.05 33.36 4.85
2470 6071 2.203684 CACTGGGGCTGCCCTTTT 60.204 61.111 34.99 17.53 44.66 2.27
2471 6072 1.838396 CACTGGGGCTGCCCTTTTT 60.838 57.895 34.99 15.74 44.66 1.94
2640 6241 6.770785 TGGACTGGGTAATGCTCATTTAATAC 59.229 38.462 0.00 0.00 32.50 1.89
2788 7293 4.662145 GCTGTATGTAGCCATGTGTTTTC 58.338 43.478 0.00 0.00 37.73 2.29
2798 7303 4.708421 AGCCATGTGTTTTCTATGATGCTT 59.292 37.500 0.00 0.00 0.00 3.91
2865 7370 3.197766 CAGCAGGGTGTCCTATTAGTTCA 59.802 47.826 0.00 0.00 42.67 3.18
2950 7462 7.824672 TCTGTTGGAGTAGTAGTAGTTAAAGC 58.175 38.462 0.00 0.00 0.00 3.51
2953 7465 9.300681 TGTTGGAGTAGTAGTAGTTAAAGCTTA 57.699 33.333 0.00 0.00 0.00 3.09
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.483877 CTGACGACAAAGCTGCCAAATA 59.516 45.455 0.00 0.00 0.00 1.40
1 2 1.267806 CTGACGACAAAGCTGCCAAAT 59.732 47.619 0.00 0.00 0.00 2.32
2 3 0.662619 CTGACGACAAAGCTGCCAAA 59.337 50.000 0.00 0.00 0.00 3.28
3 4 1.785041 GCTGACGACAAAGCTGCCAA 61.785 55.000 0.00 0.00 36.47 4.52
4 5 2.253758 GCTGACGACAAAGCTGCCA 61.254 57.895 0.00 0.00 36.47 4.92
5 6 2.558313 GCTGACGACAAAGCTGCC 59.442 61.111 0.00 0.00 36.47 4.85
9 10 1.963338 AGCCAGCTGACGACAAAGC 60.963 57.895 17.39 7.29 39.82 3.51
11 12 1.445518 TCAGCCAGCTGACGACAAA 59.554 52.632 18.14 0.00 46.80 2.83
19 20 2.974489 CTTTGCCGTCAGCCAGCTG 61.974 63.158 13.54 13.54 44.86 4.24
21 22 2.669569 TCTTTGCCGTCAGCCAGC 60.670 61.111 0.00 0.00 42.71 4.85
22 23 2.328099 GGTCTTTGCCGTCAGCCAG 61.328 63.158 0.00 0.00 42.71 4.85
23 24 2.281484 GGTCTTTGCCGTCAGCCA 60.281 61.111 0.00 0.00 42.71 4.75
25 26 0.040067 CAAAGGTCTTTGCCGTCAGC 60.040 55.000 10.05 0.00 42.66 4.26
45 46 3.859650 CTGGCTGACAGCAAAGTTG 57.140 52.632 27.87 1.96 44.75 3.16
61 62 1.154093 CATGCTTTGCCGTCAGCTG 60.154 57.895 7.63 7.63 44.23 4.24
62 63 2.986306 GCATGCTTTGCCGTCAGCT 61.986 57.895 11.37 0.00 46.15 4.24
63 64 2.505557 GCATGCTTTGCCGTCAGC 60.506 61.111 11.37 0.00 46.15 4.26
72 73 1.627864 AGGGTTTAACGGCATGCTTT 58.372 45.000 18.92 13.47 0.00 3.51
73 74 1.627864 AAGGGTTTAACGGCATGCTT 58.372 45.000 18.92 7.58 0.00 3.91
74 75 2.490509 GTTAAGGGTTTAACGGCATGCT 59.509 45.455 18.92 0.00 39.29 3.79
89 90 1.021968 GCACATTAGGCCCGTTAAGG 58.978 55.000 0.00 0.00 40.63 2.69
90 91 1.021968 GGCACATTAGGCCCGTTAAG 58.978 55.000 0.00 0.00 45.87 1.85
92 93 4.968370 GGCACATTAGGCCCGTTA 57.032 55.556 0.00 0.00 45.87 3.18
98 99 2.485122 GCACGTGGCACATTAGGC 59.515 61.111 18.88 9.13 44.52 3.93
99 100 2.784596 CGCACGTGGCACATTAGG 59.215 61.111 18.88 2.99 44.52 2.69
100 101 2.098298 GCGCACGTGGCACATTAG 59.902 61.111 18.88 7.10 44.52 1.73
101 102 3.427425 GGCGCACGTGGCACATTA 61.427 61.111 24.07 0.00 44.52 1.90
130 131 2.819117 CGTCAGCTAGCAGACGGCAA 62.819 60.000 39.52 7.24 46.97 4.52
131 132 3.342370 CGTCAGCTAGCAGACGGCA 62.342 63.158 39.52 7.94 46.97 5.69
132 133 2.580867 CGTCAGCTAGCAGACGGC 60.581 66.667 39.52 18.28 46.97 5.68
135 136 0.718343 CTTTGCGTCAGCTAGCAGAC 59.282 55.000 25.73 25.73 44.72 3.51
136 137 1.016130 GCTTTGCGTCAGCTAGCAGA 61.016 55.000 18.83 12.26 44.87 4.26
137 138 1.423056 GCTTTGCGTCAGCTAGCAG 59.577 57.895 18.83 9.54 44.87 4.24
138 139 3.566261 GCTTTGCGTCAGCTAGCA 58.434 55.556 18.83 6.60 44.87 3.49
139 140 1.133458 GTGCTTTGCGTCAGCTAGC 59.867 57.895 6.62 6.62 45.34 3.42
140 141 1.417592 CGTGCTTTGCGTCAGCTAG 59.582 57.895 3.55 0.00 45.42 3.42
141 142 2.667318 GCGTGCTTTGCGTCAGCTA 61.667 57.895 3.55 0.00 45.42 3.32
144 145 4.724697 CGGCGTGCTTTGCGTCAG 62.725 66.667 0.00 0.00 33.04 3.51
146 147 4.719616 GACGGCGTGCTTTGCGTC 62.720 66.667 21.19 5.80 0.00 5.19
149 150 2.025441 TTTGACGGCGTGCTTTGC 59.975 55.556 21.19 1.27 0.00 3.68
150 151 1.657181 GGTTTGACGGCGTGCTTTG 60.657 57.895 21.19 0.00 0.00 2.77
151 152 2.719354 GGTTTGACGGCGTGCTTT 59.281 55.556 21.19 0.00 0.00 3.51
152 153 3.284449 GGGTTTGACGGCGTGCTT 61.284 61.111 21.19 0.00 0.00 3.91
156 157 1.223417 CGTTAAGGGTTTGACGGCGT 61.223 55.000 14.65 14.65 41.12 5.68
157 158 1.494189 CGTTAAGGGTTTGACGGCG 59.506 57.895 4.80 4.80 41.12 6.46
168 169 1.021968 GCACATTAGGCCCGTTAAGG 58.978 55.000 0.00 0.00 40.63 2.69
169 170 1.021968 GGCACATTAGGCCCGTTAAG 58.978 55.000 0.00 0.00 45.87 1.85
170 171 3.178325 GGCACATTAGGCCCGTTAA 57.822 52.632 0.00 0.00 45.87 2.01
171 172 4.968370 GGCACATTAGGCCCGTTA 57.032 55.556 0.00 0.00 45.87 3.18
177 178 2.485122 GCACGTGGCACATTAGGC 59.515 61.111 18.88 9.13 44.52 3.93
178 179 2.784596 CGCACGTGGCACATTAGG 59.215 61.111 18.88 2.99 44.52 2.69
179 180 2.098298 GCGCACGTGGCACATTAG 59.902 61.111 18.88 7.10 44.52 1.73
180 181 3.427425 GGCGCACGTGGCACATTA 61.427 61.111 24.07 0.00 44.52 1.90
204 205 2.157421 CTGACAGACGGCAAAGAGC 58.843 57.895 0.00 0.00 44.65 4.09
217 218 1.300620 CCTTTGTCGTCCGCTGACA 60.301 57.895 9.06 1.77 44.17 3.58
218 219 2.668280 GCCTTTGTCGTCCGCTGAC 61.668 63.158 0.00 0.00 38.18 3.51
219 220 2.357034 GCCTTTGTCGTCCGCTGA 60.357 61.111 0.00 0.00 0.00 4.26
220 221 3.423154 GGCCTTTGTCGTCCGCTG 61.423 66.667 0.00 0.00 0.00 5.18
221 222 2.676163 AAAGGCCTTTGTCGTCCGCT 62.676 55.000 29.91 0.94 0.00 5.52
222 223 2.258726 AAAGGCCTTTGTCGTCCGC 61.259 57.895 29.91 0.00 0.00 5.54
223 224 1.574428 CAAAGGCCTTTGTCGTCCG 59.426 57.895 39.09 19.83 43.52 4.79
231 232 2.231235 CGGTAAAGATGCAAAGGCCTTT 59.769 45.455 25.47 25.47 40.13 3.11
232 233 1.818674 CGGTAAAGATGCAAAGGCCTT 59.181 47.619 13.78 13.78 40.13 4.35
233 234 1.271926 ACGGTAAAGATGCAAAGGCCT 60.272 47.619 0.00 0.00 40.13 5.19
234 235 1.132453 GACGGTAAAGATGCAAAGGCC 59.868 52.381 0.00 0.00 40.13 5.19
235 236 2.084546 AGACGGTAAAGATGCAAAGGC 58.915 47.619 0.00 0.00 41.68 4.35
236 237 2.159517 GCAGACGGTAAAGATGCAAAGG 60.160 50.000 0.00 0.00 36.88 3.11
239 240 1.271108 TGGCAGACGGTAAAGATGCAA 60.271 47.619 0.00 0.00 38.63 4.08
240 241 0.323302 TGGCAGACGGTAAAGATGCA 59.677 50.000 0.00 0.00 38.63 3.96
241 242 1.009829 CTGGCAGACGGTAAAGATGC 58.990 55.000 9.42 0.00 36.16 3.91
242 243 1.009829 GCTGGCAGACGGTAAAGATG 58.990 55.000 20.86 0.00 0.00 2.90
243 244 0.613260 TGCTGGCAGACGGTAAAGAT 59.387 50.000 20.86 0.00 0.00 2.40
245 246 0.037326 TCTGCTGGCAGACGGTAAAG 60.037 55.000 20.86 3.10 46.80 1.85
246 247 2.054458 TCTGCTGGCAGACGGTAAA 58.946 52.632 20.86 0.00 46.80 2.01
247 248 3.785982 TCTGCTGGCAGACGGTAA 58.214 55.556 20.86 0.00 46.80 2.85
255 256 0.601046 CTCTTTGTCGTCTGCTGGCA 60.601 55.000 0.00 0.00 0.00 4.92
256 257 1.294659 CCTCTTTGTCGTCTGCTGGC 61.295 60.000 0.00 0.00 0.00 4.85
257 258 0.671781 CCCTCTTTGTCGTCTGCTGG 60.672 60.000 0.00 0.00 0.00 4.85
258 259 1.294659 GCCCTCTTTGTCGTCTGCTG 61.295 60.000 0.00 0.00 0.00 4.41
259 260 1.004440 GCCCTCTTTGTCGTCTGCT 60.004 57.895 0.00 0.00 0.00 4.24
260 261 0.603975 AAGCCCTCTTTGTCGTCTGC 60.604 55.000 0.00 0.00 0.00 4.26
261 262 1.884235 AAAGCCCTCTTTGTCGTCTG 58.116 50.000 0.00 0.00 40.77 3.51
269 270 1.809684 GCTACGACAAAGCCCTCTTT 58.190 50.000 0.00 0.00 42.92 2.52
270 271 3.534721 GCTACGACAAAGCCCTCTT 57.465 52.632 0.00 0.00 33.73 2.85
276 277 1.461127 CTGAACAGGCTACGACAAAGC 59.539 52.381 0.00 0.00 39.33 3.51
277 278 1.461127 GCTGAACAGGCTACGACAAAG 59.539 52.381 3.99 0.00 0.00 2.77
278 279 1.508632 GCTGAACAGGCTACGACAAA 58.491 50.000 3.99 0.00 0.00 2.83
279 280 3.210857 GCTGAACAGGCTACGACAA 57.789 52.632 3.99 0.00 0.00 3.18
280 281 4.988065 GCTGAACAGGCTACGACA 57.012 55.556 3.99 0.00 0.00 4.35
288 289 0.606401 AACACATCCGGCTGAACAGG 60.606 55.000 13.24 0.00 34.40 4.00
289 290 0.518636 CAACACATCCGGCTGAACAG 59.481 55.000 13.24 1.54 0.00 3.16
290 291 1.514678 GCAACACATCCGGCTGAACA 61.515 55.000 13.24 0.00 0.00 3.18
291 292 1.210155 GCAACACATCCGGCTGAAC 59.790 57.895 13.24 0.00 0.00 3.18
293 294 2.359850 GGCAACACATCCGGCTGA 60.360 61.111 13.24 0.00 0.00 4.26
294 295 2.672651 TGGCAACACATCCGGCTG 60.673 61.111 3.14 3.14 46.17 4.85
311 312 0.322456 TTTGCCGTTAGCCAGCAGAT 60.322 50.000 0.00 0.00 42.71 2.90
312 313 0.955428 CTTTGCCGTTAGCCAGCAGA 60.955 55.000 0.00 0.00 42.71 4.26
313 314 1.503542 CTTTGCCGTTAGCCAGCAG 59.496 57.895 0.00 0.00 42.71 4.24
314 315 1.971167 CCTTTGCCGTTAGCCAGCA 60.971 57.895 0.00 0.00 42.71 4.41
350 351 2.180017 CTGACGGCAAAGGCATGC 59.820 61.111 9.90 9.90 45.67 4.06
352 353 3.064324 GGCTGACGGCAAAGGCAT 61.064 61.111 8.86 0.00 43.71 4.40
353 354 4.577677 TGGCTGACGGCAAAGGCA 62.578 61.111 8.86 2.32 45.67 4.75
368 369 1.973281 ACTTTGCCGTCAGCCATGG 60.973 57.895 7.63 7.63 42.71 3.66
369 370 1.210931 CACTTTGCCGTCAGCCATG 59.789 57.895 0.00 0.00 42.71 3.66
370 371 2.629656 GCACTTTGCCGTCAGCCAT 61.630 57.895 0.00 0.00 42.71 4.40
371 372 3.286751 GCACTTTGCCGTCAGCCA 61.287 61.111 0.00 0.00 42.71 4.75
381 382 3.438087 CACTACAGGAATCAGGCACTTTG 59.562 47.826 0.00 0.00 34.60 2.77
383 384 2.616510 GCACTACAGGAATCAGGCACTT 60.617 50.000 0.00 0.00 34.60 3.16
385 386 1.339055 TGCACTACAGGAATCAGGCAC 60.339 52.381 0.00 0.00 0.00 5.01
386 387 0.983467 TGCACTACAGGAATCAGGCA 59.017 50.000 0.00 0.00 0.00 4.75
388 389 2.350522 GTGTGCACTACAGGAATCAGG 58.649 52.381 19.41 0.00 40.69 3.86
389 390 1.995484 CGTGTGCACTACAGGAATCAG 59.005 52.381 19.41 0.00 45.61 2.90
390 391 1.343142 ACGTGTGCACTACAGGAATCA 59.657 47.619 19.41 0.00 45.61 2.57
391 392 1.726791 CACGTGTGCACTACAGGAATC 59.273 52.381 19.41 0.00 45.61 2.52
393 394 0.747852 TCACGTGTGCACTACAGGAA 59.252 50.000 19.41 0.00 45.61 3.36
394 395 0.313987 CTCACGTGTGCACTACAGGA 59.686 55.000 19.41 12.43 45.61 3.86
396 397 0.313987 TCCTCACGTGTGCACTACAG 59.686 55.000 19.41 12.36 40.69 2.74
397 398 0.313987 CTCCTCACGTGTGCACTACA 59.686 55.000 19.41 0.00 36.82 2.74
398 399 0.388649 CCTCCTCACGTGTGCACTAC 60.389 60.000 19.41 13.21 0.00 2.73
399 400 0.538746 TCCTCCTCACGTGTGCACTA 60.539 55.000 19.41 1.23 0.00 2.74
400 401 1.810606 CTCCTCCTCACGTGTGCACT 61.811 60.000 19.41 0.00 0.00 4.40
401 402 1.373497 CTCCTCCTCACGTGTGCAC 60.373 63.158 16.51 10.75 0.00 4.57
402 403 1.832608 ACTCCTCCTCACGTGTGCA 60.833 57.895 16.51 0.00 0.00 4.57
404 405 0.389391 AACACTCCTCCTCACGTGTG 59.611 55.000 16.51 13.39 40.19 3.82
405 406 0.389391 CAACACTCCTCCTCACGTGT 59.611 55.000 16.51 0.00 41.92 4.49
406 407 0.673985 TCAACACTCCTCCTCACGTG 59.326 55.000 9.94 9.94 0.00 4.49
407 408 0.674534 GTCAACACTCCTCCTCACGT 59.325 55.000 0.00 0.00 0.00 4.49
408 409 0.387367 CGTCAACACTCCTCCTCACG 60.387 60.000 0.00 0.00 0.00 4.35
410 411 2.281539 TACGTCAACACTCCTCCTCA 57.718 50.000 0.00 0.00 0.00 3.86
411 412 4.978083 TTATACGTCAACACTCCTCCTC 57.022 45.455 0.00 0.00 0.00 3.71
412 413 5.187186 ACAATTATACGTCAACACTCCTCCT 59.813 40.000 0.00 0.00 0.00 3.69
413 414 5.291128 CACAATTATACGTCAACACTCCTCC 59.709 44.000 0.00 0.00 0.00 4.30
414 415 5.867716 ACACAATTATACGTCAACACTCCTC 59.132 40.000 0.00 0.00 0.00 3.71
415 416 5.790593 ACACAATTATACGTCAACACTCCT 58.209 37.500 0.00 0.00 0.00 3.69
416 417 6.304126 CAACACAATTATACGTCAACACTCC 58.696 40.000 0.00 0.00 0.00 3.85
417 418 5.788531 GCAACACAATTATACGTCAACACTC 59.211 40.000 0.00 0.00 0.00 3.51
419 420 4.849383 GGCAACACAATTATACGTCAACAC 59.151 41.667 0.00 0.00 0.00 3.32
420 421 4.757657 AGGCAACACAATTATACGTCAACA 59.242 37.500 0.00 0.00 41.41 3.33
421 422 5.291293 AGGCAACACAATTATACGTCAAC 57.709 39.130 0.00 0.00 41.41 3.18
422 423 6.167685 ACTAGGCAACACAATTATACGTCAA 58.832 36.000 0.00 0.00 41.41 3.18
423 424 5.726397 ACTAGGCAACACAATTATACGTCA 58.274 37.500 0.00 0.00 41.41 4.35
425 426 5.974108 AGACTAGGCAACACAATTATACGT 58.026 37.500 0.00 0.00 41.41 3.57
426 427 6.273825 AGAGACTAGGCAACACAATTATACG 58.726 40.000 0.00 0.00 41.41 3.06
427 428 8.494016 AAAGAGACTAGGCAACACAATTATAC 57.506 34.615 0.00 0.00 41.41 1.47
428 429 8.318412 TGAAAGAGACTAGGCAACACAATTATA 58.682 33.333 0.00 0.00 41.41 0.98
429 430 7.168219 TGAAAGAGACTAGGCAACACAATTAT 58.832 34.615 0.00 0.00 41.41 1.28
430 431 6.530120 TGAAAGAGACTAGGCAACACAATTA 58.470 36.000 0.00 0.00 41.41 1.40
431 432 5.376625 TGAAAGAGACTAGGCAACACAATT 58.623 37.500 0.00 0.00 41.41 2.32
432 433 4.973168 TGAAAGAGACTAGGCAACACAAT 58.027 39.130 0.00 0.00 41.41 2.71
433 434 4.415881 TGAAAGAGACTAGGCAACACAA 57.584 40.909 0.00 0.00 41.41 3.33
434 435 4.040339 TGATGAAAGAGACTAGGCAACACA 59.960 41.667 0.00 0.00 41.41 3.72
435 436 4.569943 TGATGAAAGAGACTAGGCAACAC 58.430 43.478 0.00 0.00 41.41 3.32
436 437 4.528206 TCTGATGAAAGAGACTAGGCAACA 59.472 41.667 0.00 0.00 41.41 3.33
437 438 5.078411 TCTGATGAAAGAGACTAGGCAAC 57.922 43.478 0.00 0.00 0.00 4.17
439 440 4.037327 CGATCTGATGAAAGAGACTAGGCA 59.963 45.833 0.00 0.00 0.00 4.75
440 441 4.277174 TCGATCTGATGAAAGAGACTAGGC 59.723 45.833 0.00 0.00 0.00 3.93
442 443 5.239306 AGCTCGATCTGATGAAAGAGACTAG 59.761 44.000 0.00 0.00 34.16 2.57
444 445 3.953612 AGCTCGATCTGATGAAAGAGACT 59.046 43.478 0.00 0.00 34.16 3.24
445 446 4.305989 AGCTCGATCTGATGAAAGAGAC 57.694 45.455 0.00 0.00 34.16 3.36
446 447 4.998671 AAGCTCGATCTGATGAAAGAGA 57.001 40.909 0.00 0.00 34.16 3.10
447 448 6.128336 ACAAAAAGCTCGATCTGATGAAAGAG 60.128 38.462 0.00 0.25 34.86 2.85
448 449 5.702670 ACAAAAAGCTCGATCTGATGAAAGA 59.297 36.000 0.00 0.00 0.00 2.52
449 450 5.936054 ACAAAAAGCTCGATCTGATGAAAG 58.064 37.500 0.00 0.00 0.00 2.62
450 451 5.947228 ACAAAAAGCTCGATCTGATGAAA 57.053 34.783 0.00 0.00 0.00 2.69
451 452 5.692814 CAACAAAAAGCTCGATCTGATGAA 58.307 37.500 0.00 0.00 0.00 2.57
452 453 4.378770 GCAACAAAAAGCTCGATCTGATGA 60.379 41.667 0.00 0.00 0.00 2.92
455 456 2.877786 TGCAACAAAAAGCTCGATCTGA 59.122 40.909 0.00 0.00 0.00 3.27
456 457 3.272439 TGCAACAAAAAGCTCGATCTG 57.728 42.857 0.00 0.00 0.00 2.90
457 458 4.510038 AATGCAACAAAAAGCTCGATCT 57.490 36.364 0.00 0.00 0.00 2.75
459 460 4.082571 AGCTAATGCAACAAAAAGCTCGAT 60.083 37.500 0.00 0.00 42.74 3.59
460 461 3.253188 AGCTAATGCAACAAAAAGCTCGA 59.747 39.130 0.00 0.00 42.74 4.04
462 463 5.942872 TCTAGCTAATGCAACAAAAAGCTC 58.057 37.500 9.97 0.00 40.56 4.09
463 464 5.620879 GCTCTAGCTAATGCAACAAAAAGCT 60.621 40.000 11.39 11.02 42.58 3.74
464 465 4.560427 GCTCTAGCTAATGCAACAAAAAGC 59.440 41.667 11.39 0.00 42.74 3.51
466 467 5.703978 TGCTCTAGCTAATGCAACAAAAA 57.296 34.783 15.29 0.00 42.74 1.94
467 468 5.643664 CATGCTCTAGCTAATGCAACAAAA 58.356 37.500 19.70 1.42 42.74 2.44
468 469 4.439153 GCATGCTCTAGCTAATGCAACAAA 60.439 41.667 18.86 1.54 44.74 2.83
469 470 3.065786 GCATGCTCTAGCTAATGCAACAA 59.934 43.478 18.86 1.84 44.74 2.83
471 472 3.265070 GCATGCTCTAGCTAATGCAAC 57.735 47.619 18.86 12.85 44.74 4.17
474 475 2.492012 AGTGCATGCTCTAGCTAATGC 58.508 47.619 20.22 17.52 45.25 3.56
475 476 4.378774 AGAAGTGCATGCTCTAGCTAATG 58.621 43.478 21.70 0.00 42.66 1.90
476 477 4.686191 AGAAGTGCATGCTCTAGCTAAT 57.314 40.909 21.70 5.92 42.66 1.73
477 478 4.402474 TGTAGAAGTGCATGCTCTAGCTAA 59.598 41.667 21.70 13.22 42.66 3.09
478 479 3.954258 TGTAGAAGTGCATGCTCTAGCTA 59.046 43.478 21.70 20.57 42.66 3.32
480 481 2.863137 GTGTAGAAGTGCATGCTCTAGC 59.137 50.000 21.70 16.29 42.50 3.42
481 482 4.097741 AGAGTGTAGAAGTGCATGCTCTAG 59.902 45.833 21.70 0.00 31.26 2.43
482 483 4.019858 AGAGTGTAGAAGTGCATGCTCTA 58.980 43.478 21.70 15.62 31.26 2.43
484 485 3.186119 GAGAGTGTAGAAGTGCATGCTC 58.814 50.000 20.33 15.94 0.00 4.26
485 486 2.564504 TGAGAGTGTAGAAGTGCATGCT 59.435 45.455 20.33 0.00 0.00 3.79
486 487 2.670414 GTGAGAGTGTAGAAGTGCATGC 59.330 50.000 11.82 11.82 0.00 4.06
487 488 3.917988 TGTGAGAGTGTAGAAGTGCATG 58.082 45.455 0.00 0.00 0.00 4.06
490 491 2.734079 GCTTGTGAGAGTGTAGAAGTGC 59.266 50.000 0.00 0.00 0.00 4.40
491 492 3.321497 GGCTTGTGAGAGTGTAGAAGTG 58.679 50.000 0.00 0.00 0.00 3.16
493 494 2.564947 AGGGCTTGTGAGAGTGTAGAAG 59.435 50.000 0.00 0.00 0.00 2.85
494 495 2.609747 AGGGCTTGTGAGAGTGTAGAA 58.390 47.619 0.00 0.00 0.00 2.10
495 496 2.310779 AGGGCTTGTGAGAGTGTAGA 57.689 50.000 0.00 0.00 0.00 2.59
496 497 2.672478 CGAAGGGCTTGTGAGAGTGTAG 60.672 54.545 0.00 0.00 0.00 2.74
497 498 1.272490 CGAAGGGCTTGTGAGAGTGTA 59.728 52.381 0.00 0.00 0.00 2.90
680 682 0.116541 TCTTCCTCCTCTTCCCCGTT 59.883 55.000 0.00 0.00 0.00 4.44
697 699 2.217510 TTCTGTCGCCTTCTAGGTCT 57.782 50.000 0.00 0.00 37.80 3.85
702 704 4.127171 GCCATAATTTCTGTCGCCTTCTA 58.873 43.478 0.00 0.00 0.00 2.10
705 707 1.670811 CGCCATAATTTCTGTCGCCTT 59.329 47.619 0.00 0.00 0.00 4.35
713 715 0.381801 CGCTTGCCGCCATAATTTCT 59.618 50.000 0.00 0.00 34.21 2.52
914 919 2.096174 AGTTCTGTAACGTGCGCAAAAA 59.904 40.909 14.00 0.00 40.73 1.94
1733 4781 3.217626 ACAGGAAAACAAGAGAAGGCAG 58.782 45.455 0.00 0.00 0.00 4.85
1986 5109 5.395435 CCCATCAATTGGCATAAACACATCA 60.395 40.000 5.42 0.00 44.97 3.07
2034 5168 3.186702 TCGAGTTGAACACATGAACCA 57.813 42.857 0.00 0.00 0.00 3.67
2283 5882 3.622163 CAGAATCACTAGCCAAGAAGCAG 59.378 47.826 0.00 0.00 34.23 4.24
2367 5968 5.253330 CAGCCTTTCCCTACATTTCTGTAA 58.747 41.667 0.00 0.00 37.41 2.41
2368 5969 4.843728 CAGCCTTTCCCTACATTTCTGTA 58.156 43.478 0.00 0.00 36.79 2.74
2369 5970 3.690460 CAGCCTTTCCCTACATTTCTGT 58.310 45.455 0.00 0.00 39.49 3.41
2370 5971 2.424956 GCAGCCTTTCCCTACATTTCTG 59.575 50.000 0.00 0.00 0.00 3.02
2371 5972 2.728007 GCAGCCTTTCCCTACATTTCT 58.272 47.619 0.00 0.00 0.00 2.52
2372 5973 1.401905 CGCAGCCTTTCCCTACATTTC 59.598 52.381 0.00 0.00 0.00 2.17
2373 5974 1.271926 ACGCAGCCTTTCCCTACATTT 60.272 47.619 0.00 0.00 0.00 2.32
2374 5975 0.328258 ACGCAGCCTTTCCCTACATT 59.672 50.000 0.00 0.00 0.00 2.71
2375 5976 1.134491 GTACGCAGCCTTTCCCTACAT 60.134 52.381 0.00 0.00 0.00 2.29
2376 5977 0.248289 GTACGCAGCCTTTCCCTACA 59.752 55.000 0.00 0.00 0.00 2.74
2377 5978 0.248289 TGTACGCAGCCTTTCCCTAC 59.752 55.000 0.00 0.00 0.00 3.18
2378 5979 0.978151 TTGTACGCAGCCTTTCCCTA 59.022 50.000 0.00 0.00 0.00 3.53
2379 5980 0.328258 ATTGTACGCAGCCTTTCCCT 59.672 50.000 0.00 0.00 0.00 4.20
2380 5981 1.940613 CTATTGTACGCAGCCTTTCCC 59.059 52.381 0.00 0.00 0.00 3.97
2381 5982 2.608090 GTCTATTGTACGCAGCCTTTCC 59.392 50.000 0.00 0.00 0.00 3.13
2382 5983 2.608090 GGTCTATTGTACGCAGCCTTTC 59.392 50.000 0.00 0.00 0.00 2.62
2383 5984 2.629051 GGTCTATTGTACGCAGCCTTT 58.371 47.619 0.00 0.00 0.00 3.11
2384 5985 1.134491 GGGTCTATTGTACGCAGCCTT 60.134 52.381 0.00 0.00 0.00 4.35
2385 5986 0.464452 GGGTCTATTGTACGCAGCCT 59.536 55.000 0.00 0.00 0.00 4.58
2386 5987 0.177141 TGGGTCTATTGTACGCAGCC 59.823 55.000 0.00 0.00 35.18 4.85
2387 5988 2.018542 TTGGGTCTATTGTACGCAGC 57.981 50.000 0.00 0.00 40.36 5.25
2388 5989 3.370978 CACTTTGGGTCTATTGTACGCAG 59.629 47.826 0.00 0.00 40.36 5.18
2389 5990 3.331150 CACTTTGGGTCTATTGTACGCA 58.669 45.455 0.00 0.00 37.94 5.24
2390 5991 2.676342 CCACTTTGGGTCTATTGTACGC 59.324 50.000 0.00 0.00 32.67 4.42
2391 5992 3.934068 ACCACTTTGGGTCTATTGTACG 58.066 45.455 0.00 0.00 43.37 3.67
2401 6002 2.826003 GGGTCCGACCACTTTGGGT 61.826 63.158 19.43 0.00 43.37 4.51
2402 6003 2.033602 GGGTCCGACCACTTTGGG 59.966 66.667 19.43 0.00 43.37 4.12
2403 6004 0.605589 GAAGGGTCCGACCACTTTGG 60.606 60.000 19.43 0.00 41.02 3.28
2404 6005 0.605589 GGAAGGGTCCGACCACTTTG 60.606 60.000 19.43 0.00 41.02 2.77
2405 6006 1.759236 GGAAGGGTCCGACCACTTT 59.241 57.895 19.43 9.96 41.02 2.66
2406 6007 2.222013 GGGAAGGGTCCGACCACTT 61.222 63.158 19.43 17.88 46.04 3.16
2407 6008 2.606826 GGGAAGGGTCCGACCACT 60.607 66.667 19.43 10.80 46.04 4.00
2408 6009 3.714001 GGGGAAGGGTCCGACCAC 61.714 72.222 19.43 8.70 46.04 4.16
2409 6010 4.257810 TGGGGAAGGGTCCGACCA 62.258 66.667 19.43 0.00 46.04 4.02
2410 6011 3.400054 CTGGGGAAGGGTCCGACC 61.400 72.222 9.30 9.30 46.04 4.79
2411 6012 2.284405 TCTGGGGAAGGGTCCGAC 60.284 66.667 0.00 0.00 46.04 4.79
2412 6013 2.284405 GTCTGGGGAAGGGTCCGA 60.284 66.667 0.00 0.00 46.04 4.55
2413 6014 3.400054 GGTCTGGGGAAGGGTCCG 61.400 72.222 0.00 0.00 46.04 4.79
2414 6015 3.015753 GGGTCTGGGGAAGGGTCC 61.016 72.222 0.00 0.00 44.10 4.46
2415 6016 2.125225 AGGGTCTGGGGAAGGGTC 59.875 66.667 0.00 0.00 0.00 4.46
2416 6017 2.204151 CAGGGTCTGGGGAAGGGT 60.204 66.667 0.00 0.00 0.00 4.34
2417 6018 3.732849 GCAGGGTCTGGGGAAGGG 61.733 72.222 0.00 0.00 31.21 3.95
2418 6019 4.101448 CGCAGGGTCTGGGGAAGG 62.101 72.222 4.35 0.00 40.11 3.46
2419 6020 4.785453 GCGCAGGGTCTGGGGAAG 62.785 72.222 0.30 0.00 43.28 3.46
2431 6032 4.819761 TAGCTCCCGCTTGCGCAG 62.820 66.667 11.31 6.32 46.47 5.18
2434 6035 2.202932 ATGTAGCTCCCGCTTGCG 60.203 61.111 8.14 8.14 46.47 4.85
2435 6036 2.828128 GCATGTAGCTCCCGCTTGC 61.828 63.158 0.00 0.00 46.47 4.01
2436 6037 1.450134 TGCATGTAGCTCCCGCTTG 60.450 57.895 0.00 0.00 46.47 4.01
2437 6038 1.450312 GTGCATGTAGCTCCCGCTT 60.450 57.895 0.00 0.00 46.47 4.68
2439 6040 2.176273 CAGTGCATGTAGCTCCCGC 61.176 63.158 0.00 0.00 45.94 6.13
2440 6041 1.522355 CCAGTGCATGTAGCTCCCG 60.522 63.158 0.00 0.00 45.94 5.14
2441 6042 1.153086 CCCAGTGCATGTAGCTCCC 60.153 63.158 0.00 0.00 45.94 4.30
2442 6043 1.153086 CCCCAGTGCATGTAGCTCC 60.153 63.158 0.00 0.00 45.94 4.70
2443 6044 1.821332 GCCCCAGTGCATGTAGCTC 60.821 63.158 0.00 0.00 45.94 4.09
2444 6045 2.273449 GCCCCAGTGCATGTAGCT 59.727 61.111 0.00 0.00 45.94 3.32
2445 6046 2.117156 CAGCCCCAGTGCATGTAGC 61.117 63.158 0.00 0.00 45.96 3.58
2446 6047 2.117156 GCAGCCCCAGTGCATGTAG 61.117 63.158 0.00 0.00 40.86 2.74
2447 6048 2.045045 GCAGCCCCAGTGCATGTA 60.045 61.111 0.00 0.00 40.86 2.29
2470 6071 6.739331 AACCATGACCTACCAATTGAAAAA 57.261 33.333 7.12 0.00 0.00 1.94
2471 6072 9.707957 ATATAACCATGACCTACCAATTGAAAA 57.292 29.630 7.12 0.00 0.00 2.29
2510 6111 7.196331 AGAAAATCCTAAATCTGCAAATACGC 58.804 34.615 0.00 0.00 0.00 4.42
2740 6357 8.616076 CCTAGTGCTTGGATAAGTTTCAATTAG 58.384 37.037 0.00 0.00 36.27 1.73
2788 7293 5.181811 TCCTTGTCAACACAAAGCATCATAG 59.818 40.000 0.00 0.00 42.13 2.23
2798 7303 5.680619 AGATAAGTGTCCTTGTCAACACAA 58.319 37.500 8.58 0.00 46.47 3.33


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.