Multiple sequence alignment - TraesCS4B01G072700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G072700 chr4B 100.000 3479 0 0 1 3479 68097762 68094284 0.000000e+00 6425.0
1 TraesCS4B01G072700 chr4B 95.455 66 2 1 357 421 586458216 586458281 1.710000e-18 104.0
2 TraesCS4B01G072700 chr4B 95.385 65 3 0 357 421 592024299 592024235 1.710000e-18 104.0
3 TraesCS4B01G072700 chr4A 89.953 2150 156 27 613 2747 552407460 552409564 0.000000e+00 2719.0
4 TraesCS4B01G072700 chr4A 87.955 714 53 20 2781 3479 552409749 552410444 0.000000e+00 811.0
5 TraesCS4B01G072700 chr4A 86.254 291 27 5 132 421 187572132 187572410 1.570000e-78 303.0
6 TraesCS4B01G072700 chr4A 93.103 145 6 4 217 359 236198237 236198095 3.520000e-50 209.0
7 TraesCS4B01G072700 chr4D 87.294 1637 135 28 1856 3479 46597119 46595543 0.000000e+00 1803.0
8 TraesCS4B01G072700 chr4D 88.766 1264 75 31 579 1820 46598342 46597124 0.000000e+00 1485.0
9 TraesCS4B01G072700 chr4D 94.366 71 3 1 357 426 38303144 38303074 1.320000e-19 108.0
10 TraesCS4B01G072700 chr4D 100.000 40 0 0 20 59 46598631 46598592 1.340000e-09 75.0
11 TraesCS4B01G072700 chr4D 83.784 74 10 2 58 130 46598551 46598479 6.230000e-08 69.4
12 TraesCS4B01G072700 chr4D 95.000 40 2 0 20 59 46603050 46603011 2.900000e-06 63.9
13 TraesCS4B01G072700 chrUn 84.880 291 35 5 136 422 87837647 87837932 5.680000e-73 285.0
14 TraesCS4B01G072700 chrUn 95.588 136 5 1 227 362 322720540 322720406 2.100000e-52 217.0
15 TraesCS4B01G072700 chrUn 87.500 128 15 1 125 252 371148922 371149048 2.800000e-31 147.0
16 TraesCS4B01G072700 chr5A 96.241 133 5 0 230 362 275955527 275955395 5.850000e-53 219.0
17 TraesCS4B01G072700 chr5A 84.247 146 16 6 129 273 157478906 157478767 6.060000e-28 135.0
18 TraesCS4B01G072700 chr7A 92.466 146 9 2 213 358 78506280 78506137 1.270000e-49 207.0
19 TraesCS4B01G072700 chr7A 91.892 111 8 1 129 238 289606259 289606369 1.670000e-33 154.0
20 TraesCS4B01G072700 chr2D 92.466 146 9 2 217 361 619720687 619720543 1.270000e-49 207.0
21 TraesCS4B01G072700 chr2D 91.892 111 8 1 127 236 580013762 580013872 1.670000e-33 154.0
22 TraesCS4B01G072700 chr2D 95.522 67 2 1 357 422 585858212 585858278 4.750000e-19 106.0
23 TraesCS4B01G072700 chr3B 91.946 149 9 3 225 372 798993518 798993664 4.550000e-49 206.0
24 TraesCS4B01G072700 chr3B 90.850 153 12 2 221 373 327911297 327911447 1.640000e-48 204.0
25 TraesCS4B01G072700 chr3B 89.873 158 11 5 218 374 109844554 109844707 7.620000e-47 198.0
26 TraesCS4B01G072700 chr1B 92.414 145 9 2 218 361 623687566 623687709 4.550000e-49 206.0
27 TraesCS4B01G072700 chr5B 92.361 144 9 2 216 358 345346715 345346857 1.640000e-48 204.0
28 TraesCS4B01G072700 chr5B 90.351 114 11 0 131 244 401657464 401657351 2.160000e-32 150.0
29 TraesCS4B01G072700 chr3D 92.308 143 9 2 217 359 588394898 588394758 5.890000e-48 202.0
30 TraesCS4B01G072700 chr3A 91.781 146 8 4 213 358 471127846 471127705 2.120000e-47 200.0
31 TraesCS4B01G072700 chr2B 85.185 189 23 5 234 421 411139534 411139350 4.580000e-44 189.0
32 TraesCS4B01G072700 chr6A 92.727 110 7 1 128 236 26881654 26881545 1.290000e-34 158.0
33 TraesCS4B01G072700 chr2A 92.308 78 5 1 347 423 68018612 68018689 3.670000e-20 110.0
34 TraesCS4B01G072700 chr6D 94.203 69 3 1 357 424 95684 95752 1.710000e-18 104.0
35 TraesCS4B01G072700 chr5D 92.958 71 4 1 357 426 363003243 363003173 6.140000e-18 102.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G072700 chr4B 68094284 68097762 3478 True 6425.0 6425 100.000 1 3479 1 chr4B.!!$R1 3478
1 TraesCS4B01G072700 chr4A 552407460 552410444 2984 False 1765.0 2719 88.954 613 3479 2 chr4A.!!$F2 2866
2 TraesCS4B01G072700 chr4D 46595543 46598631 3088 True 858.1 1803 89.961 20 3479 4 chr4D.!!$R3 3459

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
248 291 0.032813 ATACTCCCTCCGTCCGGAAA 60.033 55.0 5.23 0.0 44.66 3.13 F
360 403 0.033796 TTCGGACGGAGGGAGTACAT 60.034 55.0 0.00 0.0 0.00 2.29 F
1727 1825 0.035439 CCGGGCAGGTAAACATGACT 60.035 55.0 0.00 0.0 35.69 3.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2209 2309 0.323629 TTGCCTACAAACTCCGAGGG 59.676 55.000 0.00 0.0 31.21 4.30 R
2334 2434 1.447838 GAAGTTGCGCCATCCGAGA 60.448 57.895 4.18 0.0 40.02 4.04 R
3136 3411 0.771127 CAAGAAACTCCCCACTCCCA 59.229 55.000 0.00 0.0 0.00 4.37 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
64 107 5.110940 TGACCGGCTAAAATAAACACAAC 57.889 39.130 0.00 0.00 0.00 3.32
68 111 3.602062 CGGCTAAAATAAACACAACGCAG 59.398 43.478 0.00 0.00 0.00 5.18
69 112 3.917985 GGCTAAAATAAACACAACGCAGG 59.082 43.478 0.00 0.00 0.00 4.85
70 113 3.363724 GCTAAAATAAACACAACGCAGGC 59.636 43.478 0.00 0.00 0.00 4.85
96 139 2.663196 GGCGGTTAGGAGTGCACT 59.337 61.111 21.88 21.88 0.00 4.40
101 144 2.607187 CGGTTAGGAGTGCACTTGTAG 58.393 52.381 22.65 5.57 0.00 2.74
130 173 8.319057 TCCTCTTCTCAAGGTTTAATAGCATA 57.681 34.615 0.00 0.00 35.29 3.14
131 174 8.938883 TCCTCTTCTCAAGGTTTAATAGCATAT 58.061 33.333 0.00 0.00 35.29 1.78
134 177 9.998106 TCTTCTCAAGGTTTAATAGCATATACC 57.002 33.333 0.00 0.00 0.00 2.73
135 178 9.220767 CTTCTCAAGGTTTAATAGCATATACCC 57.779 37.037 0.00 0.00 29.93 3.69
136 179 7.686434 TCTCAAGGTTTAATAGCATATACCCC 58.314 38.462 0.00 0.00 29.93 4.95
137 180 6.786122 TCAAGGTTTAATAGCATATACCCCC 58.214 40.000 0.00 0.00 29.93 5.40
138 181 6.564927 TCAAGGTTTAATAGCATATACCCCCT 59.435 38.462 0.00 0.00 29.93 4.79
139 182 6.638021 AGGTTTAATAGCATATACCCCCTC 57.362 41.667 0.00 0.00 29.93 4.30
140 183 6.340043 AGGTTTAATAGCATATACCCCCTCT 58.660 40.000 0.00 0.00 29.93 3.69
141 184 6.215636 AGGTTTAATAGCATATACCCCCTCTG 59.784 42.308 0.00 0.00 29.93 3.35
142 185 6.012771 GGTTTAATAGCATATACCCCCTCTGT 60.013 42.308 0.00 0.00 0.00 3.41
143 186 7.459234 GTTTAATAGCATATACCCCCTCTGTT 58.541 38.462 0.00 0.00 0.00 3.16
144 187 7.642094 TTAATAGCATATACCCCCTCTGTTT 57.358 36.000 0.00 0.00 0.00 2.83
145 188 5.763876 ATAGCATATACCCCCTCTGTTTC 57.236 43.478 0.00 0.00 0.00 2.78
146 189 3.669949 AGCATATACCCCCTCTGTTTCT 58.330 45.455 0.00 0.00 0.00 2.52
147 190 4.827789 AGCATATACCCCCTCTGTTTCTA 58.172 43.478 0.00 0.00 0.00 2.10
148 191 5.224441 AGCATATACCCCCTCTGTTTCTAA 58.776 41.667 0.00 0.00 0.00 2.10
149 192 5.670361 AGCATATACCCCCTCTGTTTCTAAA 59.330 40.000 0.00 0.00 0.00 1.85
150 193 6.332901 AGCATATACCCCCTCTGTTTCTAAAT 59.667 38.462 0.00 0.00 0.00 1.40
151 194 7.516209 AGCATATACCCCCTCTGTTTCTAAATA 59.484 37.037 0.00 0.00 0.00 1.40
152 195 8.329502 GCATATACCCCCTCTGTTTCTAAATAT 58.670 37.037 0.00 0.00 0.00 1.28
155 198 8.996651 ATACCCCCTCTGTTTCTAAATATTTG 57.003 34.615 11.05 1.65 0.00 2.32
156 199 6.800890 ACCCCCTCTGTTTCTAAATATTTGT 58.199 36.000 11.05 0.00 0.00 2.83
157 200 6.890268 ACCCCCTCTGTTTCTAAATATTTGTC 59.110 38.462 11.05 0.00 0.00 3.18
158 201 7.119387 CCCCCTCTGTTTCTAAATATTTGTCT 58.881 38.462 11.05 0.00 0.00 3.41
159 202 7.615757 CCCCCTCTGTTTCTAAATATTTGTCTT 59.384 37.037 11.05 0.00 0.00 3.01
160 203 9.025041 CCCCTCTGTTTCTAAATATTTGTCTTT 57.975 33.333 11.05 0.00 0.00 2.52
193 236 8.703604 TTTCAATTAGTGACTACATACAGAGC 57.296 34.615 0.00 0.00 35.39 4.09
194 237 7.404671 TCAATTAGTGACTACATACAGAGCA 57.595 36.000 0.00 0.00 0.00 4.26
195 238 7.836842 TCAATTAGTGACTACATACAGAGCAA 58.163 34.615 0.00 0.00 0.00 3.91
196 239 8.311109 TCAATTAGTGACTACATACAGAGCAAA 58.689 33.333 0.00 0.00 0.00 3.68
197 240 8.935844 CAATTAGTGACTACATACAGAGCAAAA 58.064 33.333 0.00 0.00 0.00 2.44
198 241 9.672673 AATTAGTGACTACATACAGAGCAAAAT 57.327 29.630 0.00 0.00 0.00 1.82
199 242 6.974932 AGTGACTACATACAGAGCAAAATG 57.025 37.500 0.00 0.00 0.00 2.32
200 243 6.701340 AGTGACTACATACAGAGCAAAATGA 58.299 36.000 0.00 0.00 0.00 2.57
201 244 6.815641 AGTGACTACATACAGAGCAAAATGAG 59.184 38.462 0.00 0.00 0.00 2.90
202 245 6.591834 GTGACTACATACAGAGCAAAATGAGT 59.408 38.462 0.00 0.00 0.00 3.41
203 246 6.591448 TGACTACATACAGAGCAAAATGAGTG 59.409 38.462 0.00 0.00 0.00 3.51
204 247 6.701340 ACTACATACAGAGCAAAATGAGTGA 58.299 36.000 0.00 0.00 0.00 3.41
205 248 7.161404 ACTACATACAGAGCAAAATGAGTGAA 58.839 34.615 0.00 0.00 0.00 3.18
206 249 7.826252 ACTACATACAGAGCAAAATGAGTGAAT 59.174 33.333 0.00 0.00 0.00 2.57
207 250 7.081526 ACATACAGAGCAAAATGAGTGAATC 57.918 36.000 0.00 0.00 0.00 2.52
208 251 6.883217 ACATACAGAGCAAAATGAGTGAATCT 59.117 34.615 0.00 0.00 0.00 2.40
209 252 8.043113 ACATACAGAGCAAAATGAGTGAATCTA 58.957 33.333 0.00 0.00 0.00 1.98
210 253 9.053840 CATACAGAGCAAAATGAGTGAATCTAT 57.946 33.333 0.00 0.00 0.00 1.98
212 255 8.430801 ACAGAGCAAAATGAGTGAATCTATAC 57.569 34.615 0.00 0.00 0.00 1.47
213 256 8.263640 ACAGAGCAAAATGAGTGAATCTATACT 58.736 33.333 0.00 0.00 0.00 2.12
214 257 8.763356 CAGAGCAAAATGAGTGAATCTATACTC 58.237 37.037 0.00 0.00 42.77 2.59
215 258 8.703743 AGAGCAAAATGAGTGAATCTATACTCT 58.296 33.333 0.00 0.00 42.86 3.24
216 259 9.973450 GAGCAAAATGAGTGAATCTATACTCTA 57.027 33.333 0.00 0.00 42.86 2.43
241 284 8.896722 AAAATATGTCTATATACTCCCTCCGT 57.103 34.615 0.00 0.00 0.00 4.69
242 285 8.522542 AAATATGTCTATATACTCCCTCCGTC 57.477 38.462 0.00 0.00 0.00 4.79
243 286 4.298103 TGTCTATATACTCCCTCCGTCC 57.702 50.000 0.00 0.00 0.00 4.79
244 287 3.269178 GTCTATATACTCCCTCCGTCCG 58.731 54.545 0.00 0.00 0.00 4.79
245 288 2.238144 TCTATATACTCCCTCCGTCCGG 59.762 54.545 0.00 0.00 0.00 5.14
246 289 1.070604 ATATACTCCCTCCGTCCGGA 58.929 55.000 0.00 0.00 42.90 5.14
247 290 0.846015 TATACTCCCTCCGTCCGGAA 59.154 55.000 5.23 0.00 44.66 4.30
248 291 0.032813 ATACTCCCTCCGTCCGGAAA 60.033 55.000 5.23 0.00 44.66 3.13
249 292 0.251742 TACTCCCTCCGTCCGGAAAA 60.252 55.000 5.23 0.00 44.66 2.29
250 293 0.908180 ACTCCCTCCGTCCGGAAAAT 60.908 55.000 5.23 0.00 44.66 1.82
251 294 1.117150 CTCCCTCCGTCCGGAAAATA 58.883 55.000 5.23 0.00 44.66 1.40
252 295 1.692519 CTCCCTCCGTCCGGAAAATAT 59.307 52.381 5.23 0.00 44.66 1.28
253 296 2.104281 CTCCCTCCGTCCGGAAAATATT 59.896 50.000 5.23 0.00 44.66 1.28
254 297 2.506644 TCCCTCCGTCCGGAAAATATTT 59.493 45.455 5.23 0.00 44.66 1.40
255 298 2.616842 CCCTCCGTCCGGAAAATATTTG 59.383 50.000 5.23 0.00 44.66 2.32
256 299 3.275999 CCTCCGTCCGGAAAATATTTGT 58.724 45.455 5.23 0.00 44.66 2.83
257 300 3.311596 CCTCCGTCCGGAAAATATTTGTC 59.688 47.826 5.23 2.20 44.66 3.18
258 301 3.936453 CTCCGTCCGGAAAATATTTGTCA 59.064 43.478 5.23 0.00 44.66 3.58
259 302 4.519213 TCCGTCCGGAAAATATTTGTCAT 58.481 39.130 5.23 0.00 42.05 3.06
260 303 5.672503 TCCGTCCGGAAAATATTTGTCATA 58.327 37.500 5.23 0.00 42.05 2.15
261 304 6.114089 TCCGTCCGGAAAATATTTGTCATAA 58.886 36.000 5.23 0.00 42.05 1.90
262 305 6.598457 TCCGTCCGGAAAATATTTGTCATAAA 59.402 34.615 5.23 0.00 42.05 1.40
263 306 7.120873 TCCGTCCGGAAAATATTTGTCATAAAA 59.879 33.333 5.23 0.00 42.05 1.52
264 307 7.755822 CCGTCCGGAAAATATTTGTCATAAAAA 59.244 33.333 5.23 0.00 37.50 1.94
265 308 9.296400 CGTCCGGAAAATATTTGTCATAAAAAT 57.704 29.630 5.23 0.00 0.00 1.82
277 320 8.443953 TTTGTCATAAAAATGAACAAAAGGGG 57.556 30.769 10.73 0.00 33.29 4.79
278 321 7.366847 TGTCATAAAAATGAACAAAAGGGGA 57.633 32.000 0.00 0.00 31.60 4.81
279 322 7.972301 TGTCATAAAAATGAACAAAAGGGGAT 58.028 30.769 0.00 0.00 31.60 3.85
280 323 7.877097 TGTCATAAAAATGAACAAAAGGGGATG 59.123 33.333 0.00 0.00 31.60 3.51
281 324 7.877612 GTCATAAAAATGAACAAAAGGGGATGT 59.122 33.333 0.00 0.00 31.60 3.06
282 325 9.094578 TCATAAAAATGAACAAAAGGGGATGTA 57.905 29.630 0.00 0.00 0.00 2.29
283 326 9.889128 CATAAAAATGAACAAAAGGGGATGTAT 57.111 29.630 0.00 0.00 0.00 2.29
285 328 7.797121 AAAATGAACAAAAGGGGATGTATCT 57.203 32.000 0.00 0.00 0.00 1.98
286 329 8.893563 AAAATGAACAAAAGGGGATGTATCTA 57.106 30.769 0.00 0.00 0.00 1.98
287 330 8.525290 AAATGAACAAAAGGGGATGTATCTAG 57.475 34.615 0.00 0.00 0.00 2.43
288 331 6.884472 TGAACAAAAGGGGATGTATCTAGA 57.116 37.500 0.00 0.00 0.00 2.43
289 332 7.451731 TGAACAAAAGGGGATGTATCTAGAT 57.548 36.000 10.73 10.73 0.00 1.98
290 333 7.282585 TGAACAAAAGGGGATGTATCTAGATG 58.717 38.462 15.79 0.00 0.00 2.90
291 334 6.831664 ACAAAAGGGGATGTATCTAGATGT 57.168 37.500 15.79 1.25 0.00 3.06
292 335 7.931015 ACAAAAGGGGATGTATCTAGATGTA 57.069 36.000 15.79 4.44 0.00 2.29
293 336 8.511748 ACAAAAGGGGATGTATCTAGATGTAT 57.488 34.615 15.79 9.11 0.00 2.29
294 337 8.949421 ACAAAAGGGGATGTATCTAGATGTATT 58.051 33.333 15.79 0.00 0.00 1.89
295 338 9.799106 CAAAAGGGGATGTATCTAGATGTATTT 57.201 33.333 15.79 2.90 0.00 1.40
299 342 9.845214 AGGGGATGTATCTAGATGTATTTTAGT 57.155 33.333 15.79 0.00 0.00 2.24
337 380 9.918630 CTCTTTTTATCCATTTTGATGACAAGT 57.081 29.630 0.00 0.00 37.32 3.16
344 387 8.915871 ATCCATTTTGATGACAAGTATTTTCG 57.084 30.769 0.00 0.00 37.32 3.46
345 388 7.312154 TCCATTTTGATGACAAGTATTTTCGG 58.688 34.615 0.00 0.00 37.32 4.30
346 389 7.175816 TCCATTTTGATGACAAGTATTTTCGGA 59.824 33.333 0.00 0.00 37.32 4.55
347 390 7.273381 CCATTTTGATGACAAGTATTTTCGGAC 59.727 37.037 0.00 0.00 37.32 4.79
348 391 5.524511 TTGATGACAAGTATTTTCGGACG 57.475 39.130 0.00 0.00 0.00 4.79
349 392 3.930229 TGATGACAAGTATTTTCGGACGG 59.070 43.478 0.00 0.00 0.00 4.79
350 393 3.663995 TGACAAGTATTTTCGGACGGA 57.336 42.857 0.00 0.00 0.00 4.69
351 394 3.581755 TGACAAGTATTTTCGGACGGAG 58.418 45.455 0.00 0.00 0.00 4.63
352 395 2.928116 GACAAGTATTTTCGGACGGAGG 59.072 50.000 0.00 0.00 0.00 4.30
353 396 2.277084 CAAGTATTTTCGGACGGAGGG 58.723 52.381 0.00 0.00 0.00 4.30
354 397 1.856629 AGTATTTTCGGACGGAGGGA 58.143 50.000 0.00 0.00 0.00 4.20
355 398 1.755380 AGTATTTTCGGACGGAGGGAG 59.245 52.381 0.00 0.00 0.00 4.30
356 399 1.479730 GTATTTTCGGACGGAGGGAGT 59.520 52.381 0.00 0.00 0.00 3.85
357 400 1.856629 ATTTTCGGACGGAGGGAGTA 58.143 50.000 0.00 0.00 0.00 2.59
358 401 0.890683 TTTTCGGACGGAGGGAGTAC 59.109 55.000 0.00 0.00 0.00 2.73
359 402 0.251297 TTTCGGACGGAGGGAGTACA 60.251 55.000 0.00 0.00 0.00 2.90
360 403 0.033796 TTCGGACGGAGGGAGTACAT 60.034 55.000 0.00 0.00 0.00 2.29
361 404 0.465097 TCGGACGGAGGGAGTACATC 60.465 60.000 0.00 0.00 0.00 3.06
373 416 4.500603 GGAGTACATCCGTATGTGGTAG 57.499 50.000 3.56 0.00 45.99 3.18
374 417 3.887716 GGAGTACATCCGTATGTGGTAGT 59.112 47.826 3.56 0.00 45.99 2.73
375 418 4.023365 GGAGTACATCCGTATGTGGTAGTC 60.023 50.000 3.56 0.00 45.99 2.59
376 419 3.887716 AGTACATCCGTATGTGGTAGTCC 59.112 47.826 3.56 0.00 45.99 3.85
377 420 2.742348 ACATCCGTATGTGGTAGTCCA 58.258 47.619 0.00 0.00 44.79 4.02
378 421 3.305720 ACATCCGTATGTGGTAGTCCAT 58.694 45.455 0.00 0.00 44.79 3.41
379 422 3.709653 ACATCCGTATGTGGTAGTCCATT 59.290 43.478 0.00 0.00 44.79 3.16
380 423 4.163458 ACATCCGTATGTGGTAGTCCATTT 59.837 41.667 0.00 0.00 44.79 2.32
381 424 5.364446 ACATCCGTATGTGGTAGTCCATTTA 59.636 40.000 0.00 0.00 44.79 1.40
382 425 5.936187 TCCGTATGTGGTAGTCCATTTAA 57.064 39.130 0.00 0.00 46.20 1.52
383 426 6.297080 TCCGTATGTGGTAGTCCATTTAAA 57.703 37.500 0.00 0.00 46.20 1.52
384 427 6.891388 TCCGTATGTGGTAGTCCATTTAAAT 58.109 36.000 0.00 0.00 46.20 1.40
385 428 6.987992 TCCGTATGTGGTAGTCCATTTAAATC 59.012 38.462 0.00 0.00 46.20 2.17
386 429 6.764085 CCGTATGTGGTAGTCCATTTAAATCA 59.236 38.462 0.00 0.00 46.20 2.57
387 430 7.254658 CCGTATGTGGTAGTCCATTTAAATCAC 60.255 40.741 0.00 2.71 46.20 3.06
388 431 7.494625 CGTATGTGGTAGTCCATTTAAATCACT 59.505 37.037 12.09 12.09 46.20 3.41
389 432 9.826574 GTATGTGGTAGTCCATTTAAATCACTA 57.173 33.333 10.58 10.58 46.20 2.74
391 434 9.747898 ATGTGGTAGTCCATTTAAATCACTAAA 57.252 29.630 14.25 7.01 46.20 1.85
392 435 9.575868 TGTGGTAGTCCATTTAAATCACTAAAA 57.424 29.630 14.25 6.77 46.20 1.52
417 460 9.689501 AAAGACAAATATTTATAAACGGAGGGA 57.310 29.630 0.00 0.00 0.00 4.20
418 461 8.904099 AGACAAATATTTATAAACGGAGGGAG 57.096 34.615 0.00 0.00 0.00 4.30
419 462 8.491958 AGACAAATATTTATAAACGGAGGGAGT 58.508 33.333 0.00 0.00 0.00 3.85
430 473 4.739587 ACGGAGGGAGTAGAAAAGAATC 57.260 45.455 0.00 0.00 0.00 2.52
460 503 6.732896 AAAGGTCTCAACTCTTCTTCACTA 57.267 37.500 0.00 0.00 0.00 2.74
463 506 5.598830 AGGTCTCAACTCTTCTTCACTAACA 59.401 40.000 0.00 0.00 0.00 2.41
464 507 6.098409 AGGTCTCAACTCTTCTTCACTAACAA 59.902 38.462 0.00 0.00 0.00 2.83
485 528 5.250774 ACAATATGGTACTGAACTTCCCACT 59.749 40.000 0.00 0.00 0.00 4.00
493 536 3.209410 CTGAACTTCCCACTATGGCATC 58.791 50.000 1.65 0.00 35.79 3.91
507 567 3.342377 TGGCATCACGAGATTAACCAA 57.658 42.857 6.55 0.00 30.30 3.67
539 599 8.621532 TTGTTTATATGAGCCCAAGATACATC 57.378 34.615 0.00 0.00 0.00 3.06
540 600 7.977818 TGTTTATATGAGCCCAAGATACATCT 58.022 34.615 0.00 0.00 39.22 2.90
541 601 9.100197 TGTTTATATGAGCCCAAGATACATCTA 57.900 33.333 0.00 0.00 35.76 1.98
548 608 8.441311 TGAGCCCAAGATACATCTATAATTCT 57.559 34.615 0.00 0.00 35.76 2.40
549 609 8.884323 TGAGCCCAAGATACATCTATAATTCTT 58.116 33.333 0.00 0.00 35.76 2.52
550 610 9.732130 GAGCCCAAGATACATCTATAATTCTTT 57.268 33.333 0.00 0.00 35.76 2.52
571 631 9.973661 TTCTTTTTAATAGATTGGAGGATGTCA 57.026 29.630 0.00 0.00 0.00 3.58
572 632 9.396022 TCTTTTTAATAGATTGGAGGATGTCAC 57.604 33.333 0.00 0.00 0.00 3.67
573 633 9.177608 CTTTTTAATAGATTGGAGGATGTCACA 57.822 33.333 0.00 0.00 0.00 3.58
574 634 9.699410 TTTTTAATAGATTGGAGGATGTCACAT 57.301 29.630 0.00 0.00 0.00 3.21
575 635 8.681486 TTTAATAGATTGGAGGATGTCACATG 57.319 34.615 0.00 0.00 0.00 3.21
576 636 3.572632 AGATTGGAGGATGTCACATGG 57.427 47.619 0.00 0.00 0.00 3.66
577 637 2.848694 AGATTGGAGGATGTCACATGGT 59.151 45.455 0.00 0.00 0.00 3.55
610 670 9.723601 AATTCAACACAATTTGCCTATAACATT 57.276 25.926 0.00 0.00 0.00 2.71
611 671 9.723601 ATTCAACACAATTTGCCTATAACATTT 57.276 25.926 0.00 0.00 0.00 2.32
612 672 9.553064 TTCAACACAATTTGCCTATAACATTTT 57.447 25.926 0.00 0.00 0.00 1.82
641 703 5.565509 TGACAGGCAAAAATACACTATGGA 58.434 37.500 0.00 0.00 0.00 3.41
657 719 6.772716 ACACTATGGAAATGTGTGAAAACTCT 59.227 34.615 0.00 0.00 42.43 3.24
659 721 8.137437 CACTATGGAAATGTGTGAAAACTCTTT 58.863 33.333 0.00 0.00 0.00 2.52
712 775 7.445945 ACTGGTGTAGATGCTTCTAATAATCC 58.554 38.462 10.67 9.31 36.23 3.01
713 776 7.071196 ACTGGTGTAGATGCTTCTAATAATCCA 59.929 37.037 10.67 12.41 36.23 3.41
908 987 2.902343 GCCCATAGGAAGCACCGC 60.902 66.667 0.00 0.00 44.74 5.68
1224 1307 2.932614 CTCAAGCGTGGATCTCGATTTT 59.067 45.455 13.15 3.68 34.79 1.82
1225 1308 2.672874 TCAAGCGTGGATCTCGATTTTG 59.327 45.455 13.15 12.44 34.79 2.44
1227 1310 3.520290 AGCGTGGATCTCGATTTTGTA 57.480 42.857 13.15 0.00 0.00 2.41
1229 1312 4.051922 AGCGTGGATCTCGATTTTGTATC 58.948 43.478 13.15 0.00 0.00 2.24
1236 1334 9.208022 GTGGATCTCGATTTTGTATCATTCATA 57.792 33.333 0.00 0.00 0.00 2.15
1306 1404 1.741401 CAACGGGCGCATCTCTGAA 60.741 57.895 10.83 0.00 0.00 3.02
1366 1464 2.431942 AAAGTAGCCGGCGACACG 60.432 61.111 36.15 0.00 0.00 4.49
1450 1548 2.171448 AGACCGCCTGCTCTTCAAATAT 59.829 45.455 0.00 0.00 0.00 1.28
1451 1549 2.289002 GACCGCCTGCTCTTCAAATATG 59.711 50.000 0.00 0.00 0.00 1.78
1522 1620 2.283966 CCACCACCTCCTCGTCCT 60.284 66.667 0.00 0.00 0.00 3.85
1536 1634 1.563173 GTCCTGTCAAACGTCGTGC 59.437 57.895 0.00 0.00 0.00 5.34
1582 1680 0.251634 ACTCTGCCAGAGCTAAAGGC 59.748 55.000 21.49 14.77 46.12 4.35
1726 1824 1.029947 CCCGGGCAGGTAAACATGAC 61.030 60.000 8.08 0.00 38.74 3.06
1727 1825 0.035439 CCGGGCAGGTAAACATGACT 60.035 55.000 0.00 0.00 35.69 3.41
1728 1826 1.613255 CCGGGCAGGTAAACATGACTT 60.613 52.381 0.00 0.00 35.69 3.01
1729 1827 1.468520 CGGGCAGGTAAACATGACTTG 59.531 52.381 0.00 0.00 35.69 3.16
1730 1828 2.514803 GGGCAGGTAAACATGACTTGT 58.485 47.619 0.00 0.00 41.53 3.16
1731 1829 2.228822 GGGCAGGTAAACATGACTTGTG 59.771 50.000 0.00 0.00 38.99 3.33
1732 1830 2.884639 GGCAGGTAAACATGACTTGTGT 59.115 45.455 0.00 0.00 38.99 3.72
1733 1831 3.058224 GGCAGGTAAACATGACTTGTGTC 60.058 47.826 0.00 0.00 38.99 3.67
1748 1846 4.099419 ACTTGTGTCACGATATAGGCATGA 59.901 41.667 0.00 0.00 0.00 3.07
1752 1850 4.559153 TGTCACGATATAGGCATGACATG 58.441 43.478 11.27 11.27 43.48 3.21
1803 1901 8.920665 TGCAATTTTATGTGTAACTAATGTTGC 58.079 29.630 0.00 0.00 38.89 4.17
1826 1925 6.079763 GCAGATGCATGTTATGTATTTACCG 58.920 40.000 2.46 0.00 41.59 4.02
1859 1958 0.798776 CAGGCCACGAAGATGTTGAC 59.201 55.000 5.01 0.00 0.00 3.18
1937 2036 0.171231 TGAGCGAGTTCCATCTGACG 59.829 55.000 0.00 0.00 0.00 4.35
1965 2064 3.320541 AGACAAGGAGGAGATATCAAGCG 59.679 47.826 5.32 0.00 0.00 4.68
1977 2076 3.691342 CAAGCGTCCCTGTCCCGA 61.691 66.667 0.00 0.00 0.00 5.14
1978 2077 3.692406 AAGCGTCCCTGTCCCGAC 61.692 66.667 0.00 0.00 0.00 4.79
1979 2078 4.680537 AGCGTCCCTGTCCCGACT 62.681 66.667 0.00 0.00 0.00 4.18
1981 2080 3.760035 CGTCCCTGTCCCGACTGG 61.760 72.222 12.51 12.51 46.26 4.00
2016 2115 1.535028 TGTTCGTGAATGTGATGCACC 59.465 47.619 0.00 0.00 32.73 5.01
2020 2119 1.164411 GTGAATGTGATGCACCCGAA 58.836 50.000 0.00 0.00 32.73 4.30
2028 2127 0.392998 GATGCACCCGAACCATGTCT 60.393 55.000 0.00 0.00 0.00 3.41
2038 2137 2.672651 CCATGTCTGCGGCACCAA 60.673 61.111 0.00 0.00 0.00 3.67
2076 2175 5.875359 GTGGTAAGTGTAATCTTCCTTCTGG 59.125 44.000 0.00 0.00 0.00 3.86
2097 2197 0.468029 ACCCAGACCAAAGTTGCAGG 60.468 55.000 0.00 0.00 0.00 4.85
2124 2224 7.774134 TGCAGTGACAAAATATATTCAGCAAT 58.226 30.769 0.00 0.00 0.00 3.56
2141 2241 4.072131 AGCAATTATGGTGAACTTCGTGT 58.928 39.130 0.00 0.00 35.55 4.49
2142 2242 4.154195 AGCAATTATGGTGAACTTCGTGTC 59.846 41.667 0.00 0.00 35.55 3.67
2143 2243 4.637968 CAATTATGGTGAACTTCGTGTCG 58.362 43.478 0.00 0.00 0.00 4.35
2145 2245 2.519377 ATGGTGAACTTCGTGTCGAA 57.481 45.000 4.60 4.60 43.75 3.71
2146 2246 2.296831 TGGTGAACTTCGTGTCGAAA 57.703 45.000 6.10 0.00 45.23 3.46
2147 2247 1.928503 TGGTGAACTTCGTGTCGAAAC 59.071 47.619 0.00 0.00 45.23 2.78
2148 2248 2.199236 GGTGAACTTCGTGTCGAAACT 58.801 47.619 3.82 0.00 45.23 2.66
2149 2249 2.606272 GGTGAACTTCGTGTCGAAACTT 59.394 45.455 3.82 0.00 45.23 2.66
2150 2250 3.063045 GGTGAACTTCGTGTCGAAACTTT 59.937 43.478 3.82 0.00 45.23 2.66
2154 2254 3.518590 ACTTCGTGTCGAAACTTTGAGT 58.481 40.909 3.82 0.00 45.23 3.41
2165 2265 7.439955 TGTCGAAACTTTGAGTAGAATGCTAAA 59.560 33.333 0.00 0.00 0.00 1.85
2169 2269 9.600646 GAAACTTTGAGTAGAATGCTAAACTTC 57.399 33.333 0.00 0.00 0.00 3.01
2175 2275 5.706916 AGTAGAATGCTAAACTTCGTTCGA 58.293 37.500 0.00 0.00 34.38 3.71
2183 2283 1.952266 AACTTCGTTCGAATCGCGCC 61.952 55.000 0.00 0.00 40.61 6.53
2187 2287 2.351210 GTTCGAATCGCGCCATGC 60.351 61.111 0.00 0.00 40.61 4.06
2190 2290 3.566853 CGAATCGCGCCATGCTGT 61.567 61.111 0.00 0.00 43.27 4.40
2193 2293 0.456653 GAATCGCGCCATGCTGTTTT 60.457 50.000 0.00 0.00 43.27 2.43
2194 2294 0.733566 AATCGCGCCATGCTGTTTTG 60.734 50.000 0.00 0.00 43.27 2.44
2203 2303 3.922175 GCTGTTTTGTTCCGCAGC 58.078 55.556 0.00 0.00 45.70 5.25
2205 2305 1.355210 CTGTTTTGTTCCGCAGCGT 59.645 52.632 15.05 0.00 0.00 5.07
2208 2308 0.928451 GTTTTGTTCCGCAGCGTGTC 60.928 55.000 15.05 3.78 0.00 3.67
2209 2309 2.054140 TTTTGTTCCGCAGCGTGTCC 62.054 55.000 15.05 0.00 0.00 4.02
2217 2317 4.135153 CAGCGTGTCCCCTCGGAG 62.135 72.222 0.00 0.00 39.51 4.63
2222 2322 1.752833 GTGTCCCCTCGGAGTTTGT 59.247 57.895 4.02 0.00 39.51 2.83
2226 2326 1.221021 CCCCTCGGAGTTTGTAGGC 59.779 63.158 4.02 0.00 0.00 3.93
2233 2333 2.895404 TCGGAGTTTGTAGGCAAGTACT 59.105 45.455 0.00 0.00 35.82 2.73
2239 2339 4.139038 GTTTGTAGGCAAGTACTTGGGAA 58.861 43.478 31.42 0.00 40.74 3.97
2241 2341 2.706723 TGTAGGCAAGTACTTGGGAACA 59.293 45.455 31.42 12.71 40.74 3.18
2244 2344 8.560647 TTTGTAGGCAAGTACTTGGGAACAATT 61.561 37.037 31.42 10.79 41.97 2.32
2284 2384 3.717294 GAGCCAGCGGGAAAGGGA 61.717 66.667 7.23 0.00 35.59 4.20
2318 2418 2.857575 TACGCGAGCGGAGACCACTA 62.858 60.000 21.69 0.00 44.69 2.74
2326 2426 3.468140 GAGACCACTACCGGGGCC 61.468 72.222 6.32 0.00 32.01 5.80
2400 2500 2.531103 CGACGTGTGTGTTTTCGAGTTA 59.469 45.455 0.00 0.00 0.00 2.24
2488 2588 1.364626 GGTGCGCTGAACCTGATCTG 61.365 60.000 9.73 0.00 34.66 2.90
2539 2639 1.067142 CCCGTAGAACTTGCAGCTGTA 60.067 52.381 16.64 8.31 0.00 2.74
2555 2655 6.483307 TGCAGCTGTATCACTGGAATAATAAC 59.517 38.462 16.64 0.00 34.38 1.89
2559 2659 8.486210 AGCTGTATCACTGGAATAATAACAGAA 58.514 33.333 0.00 0.00 36.17 3.02
2569 2669 5.652452 GGAATAATAACAGAAGCTGGTGGTT 59.348 40.000 0.00 0.00 35.51 3.67
2582 2682 1.066716 TGGTGGTTCGAACTTATCCCG 60.067 52.381 26.32 0.00 0.00 5.14
2607 2707 7.148804 CGGTAATCGTGATGTATTTCATACCTG 60.149 40.741 0.00 0.00 36.83 4.00
2614 2714 5.303333 TGATGTATTTCATACCTGCTACGGA 59.697 40.000 0.00 0.00 36.83 4.69
2619 2719 5.449107 TTTCATACCTGCTACGGAGTATC 57.551 43.478 0.00 0.00 44.56 2.24
2621 2721 5.494390 TCATACCTGCTACGGAGTATCTA 57.506 43.478 0.00 0.00 44.56 1.98
2674 2775 0.603975 AGGTGCACGGAAGAAGCTTC 60.604 55.000 19.11 19.11 36.80 3.86
2692 2793 4.971924 AGCTTCCTGTTGAACCTATAGGAT 59.028 41.667 26.01 14.17 37.39 3.24
2693 2794 5.071115 AGCTTCCTGTTGAACCTATAGGATC 59.929 44.000 26.01 22.48 37.39 3.36
2694 2795 5.163301 GCTTCCTGTTGAACCTATAGGATCA 60.163 44.000 23.88 23.88 43.92 2.92
2708 2809 7.721399 ACCTATAGGATCAAAAATGATGTCACC 59.279 37.037 26.01 0.00 38.94 4.02
2719 2820 1.001974 TGATGTCACCGAGTTCCCTTG 59.998 52.381 0.00 0.00 0.00 3.61
2727 2828 0.320771 CGAGTTCCCTTGACTGTGGG 60.321 60.000 0.00 0.00 44.66 4.61
2750 3013 6.349363 GGGAACATGAGAAAACCATACTTGAC 60.349 42.308 0.00 0.00 0.00 3.18
2759 3022 6.265422 AGAAAACCATACTTGACAAGGGAAAG 59.735 38.462 19.16 6.56 0.00 2.62
2760 3023 4.993705 ACCATACTTGACAAGGGAAAGA 57.006 40.909 19.16 0.00 0.00 2.52
2761 3024 5.319043 ACCATACTTGACAAGGGAAAGAA 57.681 39.130 19.16 0.00 0.00 2.52
2763 3026 6.314917 ACCATACTTGACAAGGGAAAGAAAT 58.685 36.000 19.16 0.00 0.00 2.17
2798 3061 9.670719 CAGAGAAAAACAGAGAAAAAGATTACC 57.329 33.333 0.00 0.00 0.00 2.85
2815 3078 4.908601 TTACCATCATGTCAAGACCAGT 57.091 40.909 0.00 0.00 0.00 4.00
2871 3137 8.288217 TCATAAATTTAAACGGTTGAAAGCAC 57.712 30.769 9.18 0.00 0.00 4.40
2872 3138 7.921214 TCATAAATTTAAACGGTTGAAAGCACA 59.079 29.630 9.18 0.00 0.00 4.57
2873 3139 6.969828 AAATTTAAACGGTTGAAAGCACAA 57.030 29.167 9.18 0.00 0.00 3.33
2874 3140 5.959652 ATTTAAACGGTTGAAAGCACAAC 57.040 34.783 9.18 11.21 46.20 3.32
2887 3158 5.466728 TGAAAGCACAACAGATCTACAGTTC 59.533 40.000 0.00 0.00 0.00 3.01
2907 3181 3.909430 TCGGCCATCAACGATAATACTC 58.091 45.455 2.24 0.00 33.69 2.59
2936 3211 6.232581 TCACATGTGGGTTTTCTTTGATTT 57.767 33.333 25.16 0.00 0.00 2.17
2939 3214 6.707161 CACATGTGGGTTTTCTTTGATTTCAT 59.293 34.615 18.51 0.00 0.00 2.57
2964 3239 4.546829 ACTCCCAGTTACAAATTCGCTA 57.453 40.909 0.00 0.00 0.00 4.26
2972 3247 4.986659 AGTTACAAATTCGCTACGAGTGTT 59.013 37.500 7.88 0.00 37.14 3.32
2973 3248 6.088483 CAGTTACAAATTCGCTACGAGTGTTA 59.912 38.462 7.88 0.00 37.14 2.41
3029 3304 7.366513 TGAATTAAAGATTTCAACACGCATCA 58.633 30.769 0.00 0.00 0.00 3.07
3136 3411 4.081917 GTCTAGGAGACAAAAGCTAGCACT 60.082 45.833 18.83 0.00 44.45 4.40
3179 3454 4.590850 ACTTTGCAGAATCCAGGAAAAC 57.409 40.909 0.00 0.00 0.00 2.43
3189 3464 3.553828 TCCAGGAAAACGAACTGAACT 57.446 42.857 0.00 0.00 34.21 3.01
3295 3570 0.698238 AAGGTTGCATGCCAGGTAGA 59.302 50.000 16.68 0.00 0.00 2.59
3344 3619 4.281688 ACATTGGCAGTACAAGAGCAAAAT 59.718 37.500 0.00 0.00 33.23 1.82
3378 3653 4.750098 AGATAGGTCGGTGCATTTTATTCG 59.250 41.667 0.00 0.00 0.00 3.34
3380 3655 3.541632 AGGTCGGTGCATTTTATTCGAT 58.458 40.909 0.00 0.00 0.00 3.59
3381 3656 3.312421 AGGTCGGTGCATTTTATTCGATG 59.688 43.478 0.00 0.00 0.00 3.84
3382 3657 3.311322 GGTCGGTGCATTTTATTCGATGA 59.689 43.478 0.00 0.00 0.00 2.92
3383 3658 4.518217 GTCGGTGCATTTTATTCGATGAG 58.482 43.478 0.00 0.00 0.00 2.90
3384 3659 3.559655 TCGGTGCATTTTATTCGATGAGG 59.440 43.478 0.00 0.00 0.00 3.86
3385 3660 3.312421 CGGTGCATTTTATTCGATGAGGT 59.688 43.478 0.00 0.00 0.00 3.85
3399 3679 5.670485 TCGATGAGGTTTACAACATGCTAT 58.330 37.500 0.00 0.00 0.00 2.97
3414 3694 8.262227 ACAACATGCTATGGAATCAAAATCATT 58.738 29.630 0.00 0.00 33.60 2.57
3431 3711 4.063998 TCATTGCACATACTAGCAGGAG 57.936 45.455 0.00 0.00 42.39 3.69
3432 3712 3.452264 TCATTGCACATACTAGCAGGAGT 59.548 43.478 0.00 0.00 42.39 3.85
3433 3713 2.967599 TGCACATACTAGCAGGAGTG 57.032 50.000 0.00 0.00 35.51 3.51
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.461085 AGATCATCTGCACCCCTGTAAAT 59.539 43.478 0.00 0.00 0.00 1.40
1 2 2.846206 AGATCATCTGCACCCCTGTAAA 59.154 45.455 0.00 0.00 0.00 2.01
2 3 2.435805 GAGATCATCTGCACCCCTGTAA 59.564 50.000 0.00 0.00 0.00 2.41
3 4 2.042464 GAGATCATCTGCACCCCTGTA 58.958 52.381 0.00 0.00 0.00 2.74
4 5 0.835941 GAGATCATCTGCACCCCTGT 59.164 55.000 0.00 0.00 0.00 4.00
5 6 1.129917 AGAGATCATCTGCACCCCTG 58.870 55.000 0.00 0.00 36.69 4.45
6 7 2.783379 TAGAGATCATCTGCACCCCT 57.217 50.000 0.00 0.00 39.20 4.79
7 8 4.363991 AATTAGAGATCATCTGCACCCC 57.636 45.455 0.00 0.00 39.20 4.95
8 9 7.992754 AATTAATTAGAGATCATCTGCACCC 57.007 36.000 0.00 0.00 39.20 4.61
11 12 9.208022 CGGTTAATTAATTAGAGATCATCTGCA 57.792 33.333 7.91 0.00 39.20 4.41
12 13 9.209175 ACGGTTAATTAATTAGAGATCATCTGC 57.791 33.333 7.91 0.00 39.20 4.26
76 119 4.484872 GCACTCCTAACCGCCCCC 62.485 72.222 0.00 0.00 0.00 5.40
77 120 3.712907 TGCACTCCTAACCGCCCC 61.713 66.667 0.00 0.00 0.00 5.80
79 122 1.003718 AAGTGCACTCCTAACCGCC 60.004 57.895 21.95 0.00 0.00 6.13
81 124 2.607187 CTACAAGTGCACTCCTAACCG 58.393 52.381 21.95 5.50 0.00 4.44
82 125 2.289444 TGCTACAAGTGCACTCCTAACC 60.289 50.000 21.95 8.02 35.31 2.85
91 134 1.342074 AGAGGAGTGCTACAAGTGCA 58.658 50.000 0.00 0.00 38.19 4.57
96 139 3.259374 CCTTGAGAAGAGGAGTGCTACAA 59.741 47.826 0.00 0.00 36.33 2.41
101 144 2.849294 AACCTTGAGAAGAGGAGTGC 57.151 50.000 0.00 0.00 37.72 4.40
130 173 8.566109 ACAAATATTTAGAAACAGAGGGGGTAT 58.434 33.333 0.00 0.00 0.00 2.73
131 174 7.935405 ACAAATATTTAGAAACAGAGGGGGTA 58.065 34.615 0.00 0.00 0.00 3.69
132 175 6.800890 ACAAATATTTAGAAACAGAGGGGGT 58.199 36.000 0.00 0.00 0.00 4.95
133 176 7.119387 AGACAAATATTTAGAAACAGAGGGGG 58.881 38.462 0.00 0.00 0.00 5.40
134 177 8.581253 AAGACAAATATTTAGAAACAGAGGGG 57.419 34.615 0.00 0.00 0.00 4.79
167 210 9.319143 GCTCTGTATGTAGTCACTAATTGAAAT 57.681 33.333 0.00 0.00 35.39 2.17
168 211 8.311109 TGCTCTGTATGTAGTCACTAATTGAAA 58.689 33.333 0.00 0.00 35.39 2.69
169 212 7.836842 TGCTCTGTATGTAGTCACTAATTGAA 58.163 34.615 0.00 0.00 35.39 2.69
170 213 7.404671 TGCTCTGTATGTAGTCACTAATTGA 57.595 36.000 0.00 0.00 0.00 2.57
171 214 8.479313 TTTGCTCTGTATGTAGTCACTAATTG 57.521 34.615 0.00 0.00 0.00 2.32
172 215 9.672673 ATTTTGCTCTGTATGTAGTCACTAATT 57.327 29.630 0.00 0.00 0.00 1.40
173 216 9.102757 CATTTTGCTCTGTATGTAGTCACTAAT 57.897 33.333 0.00 0.00 0.00 1.73
174 217 8.311109 TCATTTTGCTCTGTATGTAGTCACTAA 58.689 33.333 0.00 0.00 0.00 2.24
175 218 7.836842 TCATTTTGCTCTGTATGTAGTCACTA 58.163 34.615 0.00 0.00 0.00 2.74
176 219 6.701340 TCATTTTGCTCTGTATGTAGTCACT 58.299 36.000 0.00 0.00 0.00 3.41
177 220 6.591834 ACTCATTTTGCTCTGTATGTAGTCAC 59.408 38.462 0.00 0.00 0.00 3.67
178 221 6.591448 CACTCATTTTGCTCTGTATGTAGTCA 59.409 38.462 0.00 0.00 0.00 3.41
179 222 6.813649 TCACTCATTTTGCTCTGTATGTAGTC 59.186 38.462 0.00 0.00 0.00 2.59
180 223 6.701340 TCACTCATTTTGCTCTGTATGTAGT 58.299 36.000 0.00 0.00 0.00 2.73
181 224 7.601073 TTCACTCATTTTGCTCTGTATGTAG 57.399 36.000 0.00 0.00 0.00 2.74
182 225 8.043113 AGATTCACTCATTTTGCTCTGTATGTA 58.957 33.333 0.00 0.00 0.00 2.29
183 226 6.883217 AGATTCACTCATTTTGCTCTGTATGT 59.117 34.615 0.00 0.00 0.00 2.29
184 227 7.317842 AGATTCACTCATTTTGCTCTGTATG 57.682 36.000 0.00 0.00 0.00 2.39
186 229 9.534565 GTATAGATTCACTCATTTTGCTCTGTA 57.465 33.333 0.00 0.00 0.00 2.74
187 230 8.263640 AGTATAGATTCACTCATTTTGCTCTGT 58.736 33.333 0.00 0.00 0.00 3.41
188 231 8.659925 AGTATAGATTCACTCATTTTGCTCTG 57.340 34.615 0.00 0.00 0.00 3.35
189 232 8.703743 AGAGTATAGATTCACTCATTTTGCTCT 58.296 33.333 4.70 0.00 42.99 4.09
190 233 8.885494 AGAGTATAGATTCACTCATTTTGCTC 57.115 34.615 4.70 0.00 42.99 4.26
215 258 9.986157 ACGGAGGGAGTATATAGACATATTTTA 57.014 33.333 0.00 0.00 0.00 1.52
216 259 8.896722 ACGGAGGGAGTATATAGACATATTTT 57.103 34.615 0.00 0.00 0.00 1.82
217 260 7.560626 GGACGGAGGGAGTATATAGACATATTT 59.439 40.741 0.00 0.00 0.00 1.40
218 261 7.061688 GGACGGAGGGAGTATATAGACATATT 58.938 42.308 0.00 0.00 0.00 1.28
219 262 6.603224 GGACGGAGGGAGTATATAGACATAT 58.397 44.000 0.00 0.00 0.00 1.78
220 263 5.396101 CGGACGGAGGGAGTATATAGACATA 60.396 48.000 0.00 0.00 0.00 2.29
221 264 4.625805 CGGACGGAGGGAGTATATAGACAT 60.626 50.000 0.00 0.00 0.00 3.06
222 265 3.307269 CGGACGGAGGGAGTATATAGACA 60.307 52.174 0.00 0.00 0.00 3.41
223 266 3.269178 CGGACGGAGGGAGTATATAGAC 58.731 54.545 0.00 0.00 0.00 2.59
224 267 2.238144 CCGGACGGAGGGAGTATATAGA 59.762 54.545 4.40 0.00 37.50 1.98
225 268 2.238144 TCCGGACGGAGGGAGTATATAG 59.762 54.545 9.76 0.00 39.76 1.31
226 269 2.269023 TCCGGACGGAGGGAGTATATA 58.731 52.381 9.76 0.00 39.76 0.86
227 270 1.070604 TCCGGACGGAGGGAGTATAT 58.929 55.000 9.76 0.00 39.76 0.86
228 271 0.846015 TTCCGGACGGAGGGAGTATA 59.154 55.000 13.64 0.00 46.06 1.47
229 272 0.032813 TTTCCGGACGGAGGGAGTAT 60.033 55.000 13.64 0.00 46.06 2.12
230 273 0.251742 TTTTCCGGACGGAGGGAGTA 60.252 55.000 13.64 0.00 46.06 2.59
231 274 0.908180 ATTTTCCGGACGGAGGGAGT 60.908 55.000 13.64 0.00 46.06 3.85
232 275 1.117150 TATTTTCCGGACGGAGGGAG 58.883 55.000 13.64 0.00 46.06 4.30
233 276 1.797320 ATATTTTCCGGACGGAGGGA 58.203 50.000 13.64 4.60 46.06 4.20
234 277 2.616842 CAAATATTTTCCGGACGGAGGG 59.383 50.000 13.64 0.00 46.06 4.30
235 278 3.275999 ACAAATATTTTCCGGACGGAGG 58.724 45.455 13.64 0.00 46.06 4.30
236 279 3.936453 TGACAAATATTTTCCGGACGGAG 59.064 43.478 13.64 2.43 46.06 4.63
237 280 3.940319 TGACAAATATTTTCCGGACGGA 58.060 40.909 1.83 9.76 43.52 4.69
238 281 4.893424 ATGACAAATATTTTCCGGACGG 57.107 40.909 1.83 3.96 0.00 4.79
239 282 8.676454 TTTTTATGACAAATATTTTCCGGACG 57.324 30.769 1.83 0.00 0.00 4.79
251 294 9.065798 CCCCTTTTGTTCATTTTTATGACAAAT 57.934 29.630 12.29 0.00 34.67 2.32
252 295 8.267894 TCCCCTTTTGTTCATTTTTATGACAAA 58.732 29.630 0.00 0.00 33.81 2.83
253 296 7.796054 TCCCCTTTTGTTCATTTTTATGACAA 58.204 30.769 0.00 0.00 0.00 3.18
254 297 7.366847 TCCCCTTTTGTTCATTTTTATGACA 57.633 32.000 0.00 0.00 0.00 3.58
255 298 7.877612 ACATCCCCTTTTGTTCATTTTTATGAC 59.122 33.333 0.00 0.00 0.00 3.06
256 299 7.972301 ACATCCCCTTTTGTTCATTTTTATGA 58.028 30.769 0.00 0.00 0.00 2.15
257 300 9.889128 ATACATCCCCTTTTGTTCATTTTTATG 57.111 29.630 0.00 0.00 0.00 1.90
259 302 9.320295 AGATACATCCCCTTTTGTTCATTTTTA 57.680 29.630 0.00 0.00 0.00 1.52
260 303 8.206126 AGATACATCCCCTTTTGTTCATTTTT 57.794 30.769 0.00 0.00 0.00 1.94
261 304 7.797121 AGATACATCCCCTTTTGTTCATTTT 57.203 32.000 0.00 0.00 0.00 1.82
262 305 8.336235 TCTAGATACATCCCCTTTTGTTCATTT 58.664 33.333 0.00 0.00 0.00 2.32
263 306 7.872138 TCTAGATACATCCCCTTTTGTTCATT 58.128 34.615 0.00 0.00 0.00 2.57
264 307 7.451731 TCTAGATACATCCCCTTTTGTTCAT 57.548 36.000 0.00 0.00 0.00 2.57
265 308 6.884472 TCTAGATACATCCCCTTTTGTTCA 57.116 37.500 0.00 0.00 0.00 3.18
266 309 7.283329 ACATCTAGATACATCCCCTTTTGTTC 58.717 38.462 4.54 0.00 0.00 3.18
267 310 7.213178 ACATCTAGATACATCCCCTTTTGTT 57.787 36.000 4.54 0.00 0.00 2.83
268 311 6.831664 ACATCTAGATACATCCCCTTTTGT 57.168 37.500 4.54 0.00 0.00 2.83
269 312 9.799106 AAATACATCTAGATACATCCCCTTTTG 57.201 33.333 4.54 0.00 0.00 2.44
273 316 9.845214 ACTAAAATACATCTAGATACATCCCCT 57.155 33.333 4.54 0.00 0.00 4.79
311 354 9.918630 ACTTGTCATCAAAATGGATAAAAAGAG 57.081 29.630 0.00 0.00 33.42 2.85
319 362 7.975616 CCGAAAATACTTGTCATCAAAATGGAT 59.024 33.333 0.00 0.00 33.42 3.41
320 363 7.175816 TCCGAAAATACTTGTCATCAAAATGGA 59.824 33.333 0.00 0.00 33.42 3.41
321 364 7.273381 GTCCGAAAATACTTGTCATCAAAATGG 59.727 37.037 0.00 0.00 33.42 3.16
322 365 7.007367 CGTCCGAAAATACTTGTCATCAAAATG 59.993 37.037 0.00 0.00 32.87 2.32
323 366 7.021196 CGTCCGAAAATACTTGTCATCAAAAT 58.979 34.615 0.00 0.00 32.87 1.82
324 367 6.367421 CGTCCGAAAATACTTGTCATCAAAA 58.633 36.000 0.00 0.00 32.87 2.44
325 368 5.106869 CCGTCCGAAAATACTTGTCATCAAA 60.107 40.000 0.00 0.00 32.87 2.69
326 369 4.390603 CCGTCCGAAAATACTTGTCATCAA 59.609 41.667 0.00 0.00 0.00 2.57
327 370 3.930229 CCGTCCGAAAATACTTGTCATCA 59.070 43.478 0.00 0.00 0.00 3.07
328 371 4.178540 TCCGTCCGAAAATACTTGTCATC 58.821 43.478 0.00 0.00 0.00 2.92
329 372 4.181578 CTCCGTCCGAAAATACTTGTCAT 58.818 43.478 0.00 0.00 0.00 3.06
330 373 3.581755 CTCCGTCCGAAAATACTTGTCA 58.418 45.455 0.00 0.00 0.00 3.58
331 374 2.928116 CCTCCGTCCGAAAATACTTGTC 59.072 50.000 0.00 0.00 0.00 3.18
332 375 2.354403 CCCTCCGTCCGAAAATACTTGT 60.354 50.000 0.00 0.00 0.00 3.16
333 376 2.093869 TCCCTCCGTCCGAAAATACTTG 60.094 50.000 0.00 0.00 0.00 3.16
334 377 2.167900 CTCCCTCCGTCCGAAAATACTT 59.832 50.000 0.00 0.00 0.00 2.24
335 378 1.755380 CTCCCTCCGTCCGAAAATACT 59.245 52.381 0.00 0.00 0.00 2.12
336 379 1.479730 ACTCCCTCCGTCCGAAAATAC 59.520 52.381 0.00 0.00 0.00 1.89
337 380 1.856629 ACTCCCTCCGTCCGAAAATA 58.143 50.000 0.00 0.00 0.00 1.40
338 381 1.479730 GTACTCCCTCCGTCCGAAAAT 59.520 52.381 0.00 0.00 0.00 1.82
339 382 0.890683 GTACTCCCTCCGTCCGAAAA 59.109 55.000 0.00 0.00 0.00 2.29
340 383 0.251297 TGTACTCCCTCCGTCCGAAA 60.251 55.000 0.00 0.00 0.00 3.46
341 384 0.033796 ATGTACTCCCTCCGTCCGAA 60.034 55.000 0.00 0.00 0.00 4.30
342 385 0.465097 GATGTACTCCCTCCGTCCGA 60.465 60.000 0.00 0.00 0.00 4.55
343 386 1.453762 GGATGTACTCCCTCCGTCCG 61.454 65.000 0.00 0.00 38.19 4.79
344 387 1.453762 CGGATGTACTCCCTCCGTCC 61.454 65.000 14.50 0.00 45.30 4.79
345 388 2.031360 CGGATGTACTCCCTCCGTC 58.969 63.158 14.50 0.00 45.30 4.79
346 389 4.254721 CGGATGTACTCCCTCCGT 57.745 61.111 14.50 0.00 45.30 4.69
348 391 2.296471 CACATACGGATGTACTCCCTCC 59.704 54.545 14.23 0.00 44.82 4.30
349 392 2.296471 CCACATACGGATGTACTCCCTC 59.704 54.545 14.23 0.00 44.82 4.30
350 393 2.317040 CCACATACGGATGTACTCCCT 58.683 52.381 14.23 0.00 44.82 4.20
351 394 2.037144 ACCACATACGGATGTACTCCC 58.963 52.381 14.23 0.00 44.82 4.30
352 395 3.887716 ACTACCACATACGGATGTACTCC 59.112 47.826 14.23 0.00 44.82 3.85
353 396 4.023365 GGACTACCACATACGGATGTACTC 60.023 50.000 14.23 3.61 44.82 2.59
354 397 3.887716 GGACTACCACATACGGATGTACT 59.112 47.826 14.23 3.68 44.82 2.73
355 398 3.633525 TGGACTACCACATACGGATGTAC 59.366 47.826 14.23 1.29 44.82 2.90
356 399 3.900971 TGGACTACCACATACGGATGTA 58.099 45.455 14.23 0.00 44.82 2.29
391 434 9.689501 TCCCTCCGTTTATAAATATTTGTCTTT 57.310 29.630 11.05 0.00 0.00 2.52
392 435 9.338622 CTCCCTCCGTTTATAAATATTTGTCTT 57.661 33.333 11.05 0.00 0.00 3.01
393 436 8.491958 ACTCCCTCCGTTTATAAATATTTGTCT 58.508 33.333 11.05 0.00 0.00 3.41
394 437 8.672823 ACTCCCTCCGTTTATAAATATTTGTC 57.327 34.615 11.05 0.00 0.00 3.18
395 438 9.774413 CTACTCCCTCCGTTTATAAATATTTGT 57.226 33.333 11.05 6.81 0.00 2.83
396 439 9.991906 TCTACTCCCTCCGTTTATAAATATTTG 57.008 33.333 11.05 0.00 0.00 2.32
401 444 8.765517 TCTTTTCTACTCCCTCCGTTTATAAAT 58.234 33.333 0.31 0.00 0.00 1.40
402 445 8.137745 TCTTTTCTACTCCCTCCGTTTATAAA 57.862 34.615 0.00 0.00 0.00 1.40
403 446 7.722949 TCTTTTCTACTCCCTCCGTTTATAA 57.277 36.000 0.00 0.00 0.00 0.98
404 447 7.722949 TTCTTTTCTACTCCCTCCGTTTATA 57.277 36.000 0.00 0.00 0.00 0.98
405 448 6.616237 TTCTTTTCTACTCCCTCCGTTTAT 57.384 37.500 0.00 0.00 0.00 1.40
406 449 6.439692 AGATTCTTTTCTACTCCCTCCGTTTA 59.560 38.462 0.00 0.00 0.00 2.01
407 450 4.968971 TTCTTTTCTACTCCCTCCGTTT 57.031 40.909 0.00 0.00 0.00 3.60
408 451 4.778427 AGATTCTTTTCTACTCCCTCCGTT 59.222 41.667 0.00 0.00 0.00 4.44
409 452 4.354662 AGATTCTTTTCTACTCCCTCCGT 58.645 43.478 0.00 0.00 0.00 4.69
410 453 4.647399 AGAGATTCTTTTCTACTCCCTCCG 59.353 45.833 0.00 0.00 0.00 4.63
411 454 6.553953 AAGAGATTCTTTTCTACTCCCTCC 57.446 41.667 0.00 0.00 31.57 4.30
430 473 9.581099 GAAGAAGAGTTGAGACCTTTATAAGAG 57.419 37.037 0.00 0.00 0.00 2.85
438 481 6.098409 TGTTAGTGAAGAAGAGTTGAGACCTT 59.902 38.462 0.00 0.00 0.00 3.50
452 495 8.812972 AGTTCAGTACCATATTGTTAGTGAAGA 58.187 33.333 3.46 0.00 0.00 2.87
460 503 5.944007 GTGGGAAGTTCAGTACCATATTGTT 59.056 40.000 5.01 0.00 33.19 2.83
463 506 7.420214 CCATAGTGGGAAGTTCAGTACCATATT 60.420 40.741 5.01 0.00 32.67 1.28
464 507 6.043243 CCATAGTGGGAAGTTCAGTACCATAT 59.957 42.308 5.01 0.00 32.67 1.78
485 528 4.681074 TGGTTAATCTCGTGATGCCATA 57.319 40.909 0.00 0.00 32.44 2.74
545 605 9.973661 TGACATCCTCCAATCTATTAAAAAGAA 57.026 29.630 0.00 0.00 0.00 2.52
546 606 9.396022 GTGACATCCTCCAATCTATTAAAAAGA 57.604 33.333 0.00 0.00 0.00 2.52
547 607 9.177608 TGTGACATCCTCCAATCTATTAAAAAG 57.822 33.333 0.00 0.00 0.00 2.27
548 608 9.699410 ATGTGACATCCTCCAATCTATTAAAAA 57.301 29.630 0.00 0.00 0.00 1.94
549 609 9.123902 CATGTGACATCCTCCAATCTATTAAAA 57.876 33.333 0.00 0.00 0.00 1.52
550 610 7.720957 CCATGTGACATCCTCCAATCTATTAAA 59.279 37.037 0.00 0.00 0.00 1.52
551 611 7.147320 ACCATGTGACATCCTCCAATCTATTAA 60.147 37.037 0.00 0.00 0.00 1.40
552 612 6.329986 ACCATGTGACATCCTCCAATCTATTA 59.670 38.462 0.00 0.00 0.00 0.98
553 613 5.133322 ACCATGTGACATCCTCCAATCTATT 59.867 40.000 0.00 0.00 0.00 1.73
554 614 4.662179 ACCATGTGACATCCTCCAATCTAT 59.338 41.667 0.00 0.00 0.00 1.98
555 615 4.040047 ACCATGTGACATCCTCCAATCTA 58.960 43.478 0.00 0.00 0.00 1.98
556 616 2.848694 ACCATGTGACATCCTCCAATCT 59.151 45.455 0.00 0.00 0.00 2.40
557 617 3.287867 ACCATGTGACATCCTCCAATC 57.712 47.619 0.00 0.00 0.00 2.67
558 618 4.662179 AGATACCATGTGACATCCTCCAAT 59.338 41.667 0.00 0.00 0.00 3.16
559 619 4.040047 AGATACCATGTGACATCCTCCAA 58.960 43.478 0.00 0.00 0.00 3.53
560 620 3.657610 AGATACCATGTGACATCCTCCA 58.342 45.455 0.00 0.00 0.00 3.86
561 621 7.482169 TTATAGATACCATGTGACATCCTCC 57.518 40.000 0.00 0.00 0.00 4.30
562 622 9.593134 GAATTATAGATACCATGTGACATCCTC 57.407 37.037 0.00 0.00 0.00 3.71
563 623 9.104713 TGAATTATAGATACCATGTGACATCCT 57.895 33.333 0.00 0.00 0.00 3.24
564 624 9.725019 TTGAATTATAGATACCATGTGACATCC 57.275 33.333 0.00 0.00 0.00 3.51
567 627 9.325198 GTGTTGAATTATAGATACCATGTGACA 57.675 33.333 0.00 0.00 0.00 3.58
568 628 9.325198 TGTGTTGAATTATAGATACCATGTGAC 57.675 33.333 0.00 0.00 0.00 3.67
569 629 9.898152 TTGTGTTGAATTATAGATACCATGTGA 57.102 29.630 0.00 0.00 0.00 3.58
575 635 9.463443 GGCAAATTGTGTTGAATTATAGATACC 57.537 33.333 0.00 0.00 0.00 2.73
635 697 9.533253 AAAAAGAGTTTTCACACATTTCCATAG 57.467 29.630 0.00 0.00 30.96 2.23
789 856 2.034879 CACGTTGCTAGGCAGGGTG 61.035 63.158 9.36 9.36 40.61 4.61
908 987 2.625737 CTGGTGTTCTGATAGCACAGG 58.374 52.381 0.00 0.00 40.83 4.00
936 1015 0.176680 GGTGTGCAGTCGGAGATGAT 59.823 55.000 0.00 0.00 40.67 2.45
1244 1342 4.838986 AGGTAAGCTCTACAGGAAGAACAA 59.161 41.667 0.00 0.00 0.00 2.83
1306 1404 1.213926 GGGGGCTTCAGATTGATGACT 59.786 52.381 0.00 0.00 30.92 3.41
1327 1425 1.250328 TGCTCCAAGATTTGCCACTG 58.750 50.000 0.00 0.00 0.00 3.66
1451 1549 1.376037 CAAAGGAGGACGCTCCACC 60.376 63.158 11.15 11.01 46.19 4.61
1522 1620 1.153529 ACAGGCACGACGTTTGACA 60.154 52.632 0.00 0.00 0.00 3.58
1536 1634 4.193865 TGCTATGTCATTGTCATCACAGG 58.806 43.478 0.00 0.00 32.71 4.00
1726 1824 4.445718 GTCATGCCTATATCGTGACACAAG 59.554 45.833 16.46 0.00 45.20 3.16
1727 1825 4.368315 GTCATGCCTATATCGTGACACAA 58.632 43.478 16.46 0.00 45.20 3.33
1728 1826 3.977427 GTCATGCCTATATCGTGACACA 58.023 45.455 16.46 0.00 45.20 3.72
1748 1846 6.260936 GGTGCATTCTAATTAGTACTGCATGT 59.739 38.462 26.46 0.00 36.40 3.21
1752 1850 5.817816 ACTGGTGCATTCTAATTAGTACTGC 59.182 40.000 20.10 20.10 0.00 4.40
1803 1901 6.204688 ACCGGTAAATACATAACATGCATCTG 59.795 38.462 4.49 0.00 0.00 2.90
1818 1917 1.557832 AGCAGGCTCAACCGGTAAATA 59.442 47.619 8.00 0.00 46.52 1.40
1826 1925 3.060615 CCTGCAGCAGGCTCAACC 61.061 66.667 28.85 0.00 45.13 3.77
1843 1942 1.131126 CCATGTCAACATCTTCGTGGC 59.869 52.381 0.00 0.00 33.61 5.01
1847 1946 4.024302 CCATGATCCATGTCAACATCTTCG 60.024 45.833 0.00 0.00 39.94 3.79
1849 1948 4.643334 CACCATGATCCATGTCAACATCTT 59.357 41.667 0.00 0.00 39.94 2.40
1859 1958 0.887836 CCGCCTCACCATGATCCATG 60.888 60.000 0.00 0.00 41.10 3.66
1937 2036 2.239681 TCTCCTCCTTGTCTTCCTCC 57.760 55.000 0.00 0.00 0.00 4.30
1977 2076 2.115266 CGGGTTTCTTGGCCCAGT 59.885 61.111 0.00 0.00 45.07 4.00
1978 2077 2.676471 CCGGGTTTCTTGGCCCAG 60.676 66.667 0.00 0.00 45.07 4.45
1979 2078 3.503839 ACCGGGTTTCTTGGCCCA 61.504 61.111 6.32 0.00 45.07 5.36
1981 2080 1.802337 GAACACCGGGTTTCTTGGCC 61.802 60.000 6.32 0.00 40.63 5.36
1988 2087 0.948678 CATTCACGAACACCGGGTTT 59.051 50.000 6.32 0.00 43.48 3.27
2016 2115 3.499737 GCCGCAGACATGGTTCGG 61.500 66.667 11.80 11.80 42.68 4.30
2020 2119 3.490031 TTGGTGCCGCAGACATGGT 62.490 57.895 0.00 0.00 0.00 3.55
2038 2137 1.485294 TACCACAATGCTGGTCCGGT 61.485 55.000 0.00 0.00 43.94 5.28
2076 2175 1.338020 CTGCAACTTTGGTCTGGGTTC 59.662 52.381 0.00 0.00 0.00 3.62
2097 2197 7.028962 TGCTGAATATATTTTGTCACTGCAAC 58.971 34.615 0.00 0.00 0.00 4.17
2124 2224 3.646611 TCGACACGAAGTTCACCATAA 57.353 42.857 3.32 0.00 41.61 1.90
2137 2237 5.599715 CATTCTACTCAAAGTTTCGACACG 58.400 41.667 0.00 0.00 0.00 4.49
2141 2241 7.656137 AGTTTAGCATTCTACTCAAAGTTTCGA 59.344 33.333 0.00 0.00 0.00 3.71
2142 2242 7.797819 AGTTTAGCATTCTACTCAAAGTTTCG 58.202 34.615 0.00 0.00 0.00 3.46
2143 2243 9.600646 GAAGTTTAGCATTCTACTCAAAGTTTC 57.399 33.333 0.00 0.00 0.00 2.78
2145 2245 7.441458 ACGAAGTTTAGCATTCTACTCAAAGTT 59.559 33.333 0.00 0.00 37.78 2.66
2146 2246 6.929606 ACGAAGTTTAGCATTCTACTCAAAGT 59.070 34.615 0.00 0.00 37.78 2.66
2147 2247 7.352719 ACGAAGTTTAGCATTCTACTCAAAG 57.647 36.000 0.00 0.00 37.78 2.77
2165 2265 2.442188 GGCGCGATTCGAACGAAGT 61.442 57.895 12.10 4.23 41.67 3.01
2169 2269 2.053984 CATGGCGCGATTCGAACG 60.054 61.111 12.10 7.89 41.67 3.95
2183 2283 1.411394 CTGCGGAACAAAACAGCATG 58.589 50.000 0.00 0.00 46.00 4.06
2187 2287 0.929824 CACGCTGCGGAACAAAACAG 60.930 55.000 26.95 0.00 0.00 3.16
2190 2290 1.353804 GACACGCTGCGGAACAAAA 59.646 52.632 26.95 0.00 0.00 2.44
2193 2293 4.980805 GGGACACGCTGCGGAACA 62.981 66.667 26.95 0.00 0.00 3.18
2203 2303 1.374252 CAAACTCCGAGGGGACACG 60.374 63.158 0.00 0.00 44.43 4.49
2205 2305 1.263356 CTACAAACTCCGAGGGGACA 58.737 55.000 0.00 0.00 37.43 4.02
2208 2308 1.221021 GCCTACAAACTCCGAGGGG 59.779 63.158 0.00 0.00 0.00 4.79
2209 2309 0.323629 TTGCCTACAAACTCCGAGGG 59.676 55.000 0.00 0.00 31.21 4.30
2217 2317 3.746940 TCCCAAGTACTTGCCTACAAAC 58.253 45.455 27.05 0.00 39.16 2.93
2222 2322 4.650972 ATTGTTCCCAAGTACTTGCCTA 57.349 40.909 27.05 13.09 39.16 3.93
2226 2326 3.320541 TGCCAATTGTTCCCAAGTACTTG 59.679 43.478 25.79 25.79 40.13 3.16
2233 2333 3.303938 TCTCTTTGCCAATTGTTCCCAA 58.696 40.909 4.43 0.00 34.45 4.12
2239 2339 5.623824 GCAGAATGATCTCTTTGCCAATTGT 60.624 40.000 4.43 0.00 39.69 2.71
2241 2341 4.439700 CGCAGAATGATCTCTTTGCCAATT 60.440 41.667 0.00 0.00 39.69 2.32
2244 2344 2.011947 CGCAGAATGATCTCTTTGCCA 58.988 47.619 0.00 0.00 39.69 4.92
2249 2349 2.224018 GCTCTCCGCAGAATGATCTCTT 60.224 50.000 0.00 0.00 39.69 2.85
2272 2372 3.330720 CCACCTCCCTTTCCCGCT 61.331 66.667 0.00 0.00 0.00 5.52
2284 2384 4.065281 GTAGCGGACGTGCCACCT 62.065 66.667 0.00 0.00 35.94 4.00
2302 2402 2.102553 GTAGTGGTCTCCGCTCGC 59.897 66.667 5.09 0.00 40.81 5.03
2304 2404 2.772691 CCGGTAGTGGTCTCCGCTC 61.773 68.421 5.09 0.00 40.81 5.03
2314 2414 4.162690 GCAGAGGCCCCGGTAGTG 62.163 72.222 0.00 0.00 0.00 2.74
2326 2426 2.415010 CCATCCGAGACCGCAGAG 59.585 66.667 0.00 0.00 0.00 3.35
2334 2434 1.447838 GAAGTTGCGCCATCCGAGA 60.448 57.895 4.18 0.00 40.02 4.04
2336 2436 2.813474 CGAAGTTGCGCCATCCGA 60.813 61.111 4.18 0.00 40.02 4.55
2364 2464 4.680237 TCGTGTGCAAGGAGGCCG 62.680 66.667 0.00 0.00 0.00 6.13
2385 2485 4.083484 CCCTCCATTAACTCGAAAACACAC 60.083 45.833 0.00 0.00 0.00 3.82
2388 2488 4.069304 CACCCTCCATTAACTCGAAAACA 58.931 43.478 0.00 0.00 0.00 2.83
2389 2489 3.119955 GCACCCTCCATTAACTCGAAAAC 60.120 47.826 0.00 0.00 0.00 2.43
2394 2494 1.429148 GCGCACCCTCCATTAACTCG 61.429 60.000 0.30 0.00 0.00 4.18
2488 2588 2.350772 GCACATAAGTTCACACAGGCAC 60.351 50.000 0.00 0.00 0.00 5.01
2539 2639 6.769822 CCAGCTTCTGTTATTATTCCAGTGAT 59.230 38.462 0.00 0.00 0.00 3.06
2555 2655 0.868406 GTTCGAACCACCAGCTTCTG 59.132 55.000 17.68 0.00 0.00 3.02
2559 2659 2.354805 GGATAAGTTCGAACCACCAGCT 60.355 50.000 24.22 1.11 0.00 4.24
2569 2669 2.951642 ACGATTACCGGGATAAGTTCGA 59.048 45.455 6.32 0.00 43.93 3.71
2607 2707 4.337555 TGAACTTGGTAGATACTCCGTAGC 59.662 45.833 0.00 0.00 0.00 3.58
2692 2793 4.215399 GGAACTCGGTGACATCATTTTTGA 59.785 41.667 0.00 0.00 0.00 2.69
2693 2794 4.475944 GGAACTCGGTGACATCATTTTTG 58.524 43.478 0.00 0.00 0.00 2.44
2694 2795 3.506067 GGGAACTCGGTGACATCATTTTT 59.494 43.478 0.00 0.00 0.00 1.94
2695 2796 3.081804 GGGAACTCGGTGACATCATTTT 58.918 45.455 0.00 0.00 0.00 1.82
2696 2797 2.305927 AGGGAACTCGGTGACATCATTT 59.694 45.455 0.00 0.00 32.90 2.32
2699 2800 1.001974 CAAGGGAACTCGGTGACATCA 59.998 52.381 0.00 0.00 42.68 3.07
2708 2809 3.217242 CCACAGTCAAGGGAACTCG 57.783 57.895 0.00 0.00 42.68 4.18
2719 2820 3.253432 GGTTTTCTCATGTTCCCACAGTC 59.747 47.826 0.00 0.00 35.94 3.51
2727 2828 7.202016 TGTCAAGTATGGTTTTCTCATGTTC 57.798 36.000 0.00 0.00 0.00 3.18
2781 3044 7.884877 TGACATGATGGTAATCTTTTTCTCTGT 59.115 33.333 0.00 0.00 33.61 3.41
2782 3045 8.272545 TGACATGATGGTAATCTTTTTCTCTG 57.727 34.615 0.00 0.00 33.61 3.35
2783 3046 8.868522 TTGACATGATGGTAATCTTTTTCTCT 57.131 30.769 0.00 0.00 33.61 3.10
2784 3047 8.950210 TCTTGACATGATGGTAATCTTTTTCTC 58.050 33.333 0.00 0.00 33.61 2.87
2785 3048 8.734386 GTCTTGACATGATGGTAATCTTTTTCT 58.266 33.333 0.00 0.00 33.61 2.52
2786 3049 7.970614 GGTCTTGACATGATGGTAATCTTTTTC 59.029 37.037 0.00 0.00 33.61 2.29
2787 3050 7.451255 TGGTCTTGACATGATGGTAATCTTTTT 59.549 33.333 0.00 0.00 33.61 1.94
2788 3051 6.947733 TGGTCTTGACATGATGGTAATCTTTT 59.052 34.615 0.00 0.00 33.61 2.27
2789 3052 6.484288 TGGTCTTGACATGATGGTAATCTTT 58.516 36.000 0.00 0.00 33.61 2.52
2790 3053 6.065976 TGGTCTTGACATGATGGTAATCTT 57.934 37.500 0.00 0.00 33.61 2.40
2791 3054 5.190528 ACTGGTCTTGACATGATGGTAATCT 59.809 40.000 0.00 0.00 33.61 2.40
2867 3133 3.579709 CGAACTGTAGATCTGTTGTGCT 58.420 45.455 5.18 0.00 38.11 4.40
2871 3137 2.271800 GGCCGAACTGTAGATCTGTTG 58.728 52.381 5.18 0.00 38.11 3.33
2872 3138 1.899814 TGGCCGAACTGTAGATCTGTT 59.100 47.619 5.18 0.46 40.10 3.16
2873 3139 1.557099 TGGCCGAACTGTAGATCTGT 58.443 50.000 5.18 0.00 0.00 3.41
2874 3140 2.101415 TGATGGCCGAACTGTAGATCTG 59.899 50.000 5.18 0.00 0.00 2.90
2875 3141 2.388735 TGATGGCCGAACTGTAGATCT 58.611 47.619 0.00 0.00 0.00 2.75
2887 3158 3.428870 GTGAGTATTATCGTTGATGGCCG 59.571 47.826 0.00 0.00 0.00 6.13
2907 3181 3.822735 AGAAAACCCACATGTGATCTGTG 59.177 43.478 27.46 8.91 42.88 3.66
2936 3211 6.072728 CGAATTTGTAACTGGGAGTTCAATGA 60.073 38.462 0.00 0.00 39.51 2.57
2939 3214 4.023536 GCGAATTTGTAACTGGGAGTTCAA 60.024 41.667 0.00 0.00 39.51 2.69
2972 3247 5.164620 TCATGCTGTTTCTCCATGAGTTA 57.835 39.130 0.00 0.00 40.09 2.24
2973 3248 4.025040 TCATGCTGTTTCTCCATGAGTT 57.975 40.909 0.00 0.00 40.09 3.01
3029 3304 5.867903 TTCATTGGATGGTTCTTGTTTGT 57.132 34.783 0.00 0.00 0.00 2.83
3136 3411 0.771127 CAAGAAACTCCCCACTCCCA 59.229 55.000 0.00 0.00 0.00 4.37
3179 3454 3.296322 AGCTCTTCTGAGTTCAGTTCG 57.704 47.619 8.85 0.29 44.12 3.95
3189 3464 4.829968 CATCTCTTTGGAAGCTCTTCTGA 58.170 43.478 9.23 3.45 39.45 3.27
3344 3619 4.028131 ACCGACCTATCTGAACATTACCA 58.972 43.478 0.00 0.00 0.00 3.25
3385 3660 9.585099 GATTTTGATTCCATAGCATGTTGTAAA 57.415 29.630 0.00 0.00 0.00 2.01
3399 3679 7.172868 AGTATGTGCAATGATTTTGATTCCA 57.827 32.000 0.00 0.00 0.00 3.53
3414 3694 1.134699 GCACTCCTGCTAGTATGTGCA 60.135 52.381 20.17 1.46 46.64 4.57
3431 3711 8.726988 TGTTAGTTAGAATTTTATGTCCTGCAC 58.273 33.333 0.00 0.00 0.00 4.57
3432 3712 8.856153 TGTTAGTTAGAATTTTATGTCCTGCA 57.144 30.769 0.00 0.00 0.00 4.41


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.