Multiple sequence alignment - TraesCS4B01G072200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G072200 chr4B 100.000 2951 0 0 1 2951 67355225 67352275 0.000000e+00 5450.0
1 TraesCS4B01G072200 chr4B 89.022 2250 142 44 412 2592 67544463 67542250 0.000000e+00 2689.0
2 TraesCS4B01G072200 chr4B 90.447 1633 138 10 972 2592 67485155 67483529 0.000000e+00 2135.0
3 TraesCS4B01G072200 chr4B 89.273 1622 133 26 906 2501 67094932 67096538 0.000000e+00 1993.0
4 TraesCS4B01G072200 chr4B 80.314 574 35 32 412 923 67491649 67491092 2.530000e-96 363.0
5 TraesCS4B01G072200 chr4B 100.000 194 0 0 3250 3443 67351976 67351783 3.270000e-95 359.0
6 TraesCS4B01G072200 chr4B 90.659 182 14 1 729 910 67089748 67089926 4.440000e-59 239.0
7 TraesCS4B01G072200 chr4B 94.828 58 3 0 2646 2703 67483526 67483469 1.320000e-14 91.6
8 TraesCS4B01G072200 chr4D 91.663 2039 122 20 678 2703 46187710 46185707 0.000000e+00 2780.0
9 TraesCS4B01G072200 chr4D 88.925 1833 138 35 687 2500 46176686 46178472 0.000000e+00 2200.0
10 TraesCS4B01G072200 chr4D 81.797 434 27 21 181 577 46188210 46187792 1.990000e-82 316.0
11 TraesCS4B01G072200 chr4D 91.176 136 8 2 180 311 46174862 46174997 7.590000e-42 182.0
12 TraesCS4B01G072200 chr4D 94.030 67 3 1 581 646 46175424 46175490 2.190000e-17 100.0
13 TraesCS4B01G072200 chr4A 93.440 1631 89 9 683 2301 552816530 552818154 0.000000e+00 2403.0
14 TraesCS4B01G072200 chr4A 90.810 1556 111 25 924 2454 552833192 552831644 0.000000e+00 2052.0
15 TraesCS4B01G072200 chr4A 92.614 352 21 3 2325 2672 552818136 552818486 5.130000e-138 501.0
16 TraesCS4B01G072200 chr4A 88.235 136 8 2 42 169 552815330 552815465 4.600000e-34 156.0
17 TraesCS4B01G072200 chr4A 88.148 135 7 6 181 311 552844093 552843964 5.950000e-33 152.0
18 TraesCS4B01G072200 chr4A 92.453 53 4 0 2842 2894 623723203 623723151 3.680000e-10 76.8
19 TraesCS4B01G072200 chr5D 77.171 1117 214 29 1201 2289 74145213 74146316 2.270000e-171 612.0
20 TraesCS4B01G072200 chr5B 77.151 1116 216 28 1201 2289 78221084 78219981 2.270000e-171 612.0
21 TraesCS4B01G072200 chr3B 95.361 194 7 2 3251 3443 659299637 659299445 1.200000e-79 307.0
22 TraesCS4B01G072200 chr3B 97.458 118 3 0 2834 2951 659299867 659299750 5.830000e-48 202.0
23 TraesCS4B01G072200 chr6B 85.714 273 37 2 1990 2262 43276036 43275766 1.560000e-73 287.0
24 TraesCS4B01G072200 chr6B 87.069 116 15 0 2828 2943 703397606 703397721 7.750000e-27 132.0
25 TraesCS4B01G072200 chr6B 85.714 70 8 2 2828 2896 88326148 88326080 4.770000e-09 73.1
26 TraesCS4B01G072200 chr7D 93.827 81 5 0 1265 1345 564687405 564687325 4.670000e-24 122.0
27 TraesCS4B01G072200 chr6D 93.750 80 5 0 1266 1345 7294610 7294531 1.680000e-23 121.0
28 TraesCS4B01G072200 chr6D 95.918 49 1 1 2835 2883 4057998 4057951 1.020000e-10 78.7
29 TraesCS4B01G072200 chr7B 84.884 86 9 4 2829 2912 559638860 559638777 2.200000e-12 84.2
30 TraesCS4B01G072200 chr5A 91.071 56 5 0 2820 2875 452436441 452436386 3.680000e-10 76.8
31 TraesCS4B01G072200 chr7A 92.308 52 4 0 2842 2893 733692561 733692612 1.330000e-09 75.0
32 TraesCS4B01G072200 chrUn 91.489 47 4 0 2829 2875 76111102 76111148 7.980000e-07 65.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G072200 chr4B 67351783 67355225 3442 True 2904.500000 5450 100.000000 1 3443 2 chr4B.!!$R3 3442
1 TraesCS4B01G072200 chr4B 67542250 67544463 2213 True 2689.000000 2689 89.022000 412 2592 1 chr4B.!!$R2 2180
2 TraesCS4B01G072200 chr4B 67094932 67096538 1606 False 1993.000000 1993 89.273000 906 2501 1 chr4B.!!$F2 1595
3 TraesCS4B01G072200 chr4B 67483469 67485155 1686 True 1113.300000 2135 92.637500 972 2703 2 chr4B.!!$R4 1731
4 TraesCS4B01G072200 chr4B 67491092 67491649 557 True 363.000000 363 80.314000 412 923 1 chr4B.!!$R1 511
5 TraesCS4B01G072200 chr4D 46185707 46188210 2503 True 1548.000000 2780 86.730000 181 2703 2 chr4D.!!$R1 2522
6 TraesCS4B01G072200 chr4D 46174862 46178472 3610 False 827.333333 2200 91.377000 180 2500 3 chr4D.!!$F1 2320
7 TraesCS4B01G072200 chr4A 552831644 552833192 1548 True 2052.000000 2052 90.810000 924 2454 1 chr4A.!!$R1 1530
8 TraesCS4B01G072200 chr4A 552815330 552818486 3156 False 1020.000000 2403 91.429667 42 2672 3 chr4A.!!$F1 2630
9 TraesCS4B01G072200 chr5D 74145213 74146316 1103 False 612.000000 612 77.171000 1201 2289 1 chr5D.!!$F1 1088
10 TraesCS4B01G072200 chr5B 78219981 78221084 1103 True 612.000000 612 77.151000 1201 2289 1 chr5B.!!$R1 1088

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
172 181 0.175531 GTACACCCCAATTGCCATGC 59.824 55.0 0.0 0.0 0.0 4.06 F
563 1203 0.179056 ATAATCCTGCCACCGAACCG 60.179 55.0 0.0 0.0 0.0 4.44 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1101 2952 0.031314 AGCTGTAGCCGTCATCATCG 59.969 55.0 0.0 0.0 43.38 3.84 R
2545 4498 0.318445 ACGCACAACTCGTACTGGTC 60.318 55.0 0.0 0.0 38.52 4.02 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 2.840576 TGGAAACCTTGGTCCCGG 59.159 61.111 0.00 0.00 32.48 5.73
18 19 1.770927 TGGAAACCTTGGTCCCGGA 60.771 57.895 0.73 0.00 32.48 5.14
19 20 1.354168 TGGAAACCTTGGTCCCGGAA 61.354 55.000 0.73 0.00 32.48 4.30
20 21 0.608308 GGAAACCTTGGTCCCGGAAG 60.608 60.000 0.73 0.00 0.00 3.46
21 22 1.228459 AAACCTTGGTCCCGGAAGC 60.228 57.895 0.73 0.00 0.00 3.86
22 23 2.002018 AAACCTTGGTCCCGGAAGCA 62.002 55.000 0.73 0.00 0.00 3.91
23 24 2.002018 AACCTTGGTCCCGGAAGCAA 62.002 55.000 4.87 4.87 35.50 3.91
24 25 1.971695 CCTTGGTCCCGGAAGCAAC 60.972 63.158 0.00 0.00 33.41 4.17
25 26 1.073199 CTTGGTCCCGGAAGCAACT 59.927 57.895 0.00 0.00 33.41 3.16
26 27 0.955919 CTTGGTCCCGGAAGCAACTC 60.956 60.000 0.00 0.00 33.41 3.01
27 28 2.434359 GGTCCCGGAAGCAACTCG 60.434 66.667 0.73 0.00 0.00 4.18
28 29 3.119096 GTCCCGGAAGCAACTCGC 61.119 66.667 0.73 0.00 42.91 5.03
29 30 3.621805 TCCCGGAAGCAACTCGCA 61.622 61.111 0.73 0.00 46.13 5.10
30 31 3.423154 CCCGGAAGCAACTCGCAC 61.423 66.667 0.73 0.00 46.13 5.34
31 32 2.664851 CCGGAAGCAACTCGCACA 60.665 61.111 0.00 0.00 46.13 4.57
32 33 2.551270 CGGAAGCAACTCGCACAC 59.449 61.111 0.00 0.00 46.13 3.82
33 34 2.551270 GGAAGCAACTCGCACACG 59.449 61.111 0.00 0.00 46.13 4.49
34 35 2.244651 GGAAGCAACTCGCACACGT 61.245 57.895 0.00 0.00 46.13 4.49
35 36 0.942410 GGAAGCAACTCGCACACGTA 60.942 55.000 0.00 0.00 46.13 3.57
36 37 1.068474 GAAGCAACTCGCACACGTAT 58.932 50.000 0.00 0.00 46.13 3.06
37 38 0.790207 AAGCAACTCGCACACGTATG 59.210 50.000 0.00 0.00 46.13 2.39
38 39 0.319555 AGCAACTCGCACACGTATGT 60.320 50.000 0.00 0.00 46.13 2.29
39 40 1.068125 AGCAACTCGCACACGTATGTA 60.068 47.619 0.00 0.00 46.13 2.29
40 41 1.058695 GCAACTCGCACACGTATGTAC 59.941 52.381 0.00 0.00 41.79 2.90
76 77 1.363443 CCACCACACGCTTGCATTT 59.637 52.632 0.00 0.00 0.00 2.32
77 78 0.595588 CCACCACACGCTTGCATTTA 59.404 50.000 0.00 0.00 0.00 1.40
130 139 1.663173 CCAACCGATTTTGCCCGTT 59.337 52.632 0.00 0.00 0.00 4.44
131 140 0.665972 CCAACCGATTTTGCCCGTTG 60.666 55.000 0.00 0.00 0.00 4.10
169 178 1.133325 ACTTGTACACCCCAATTGCCA 60.133 47.619 0.00 0.00 0.00 4.92
170 179 2.178580 CTTGTACACCCCAATTGCCAT 58.821 47.619 0.00 0.00 0.00 4.40
171 180 1.554836 TGTACACCCCAATTGCCATG 58.445 50.000 0.00 0.00 0.00 3.66
172 181 0.175531 GTACACCCCAATTGCCATGC 59.824 55.000 0.00 0.00 0.00 4.06
173 182 0.251967 TACACCCCAATTGCCATGCA 60.252 50.000 0.00 0.00 36.47 3.96
174 183 0.910566 ACACCCCAATTGCCATGCAT 60.911 50.000 0.00 0.00 38.76 3.96
175 184 0.462937 CACCCCAATTGCCATGCATG 60.463 55.000 20.19 20.19 38.76 4.06
177 186 0.253610 CCCCAATTGCCATGCATGTT 59.746 50.000 24.58 10.02 38.76 2.71
178 187 1.658994 CCCAATTGCCATGCATGTTC 58.341 50.000 24.58 16.03 38.76 3.18
229 273 9.841295 AACAAAAGAATACTTGTACAGTTCCTA 57.159 29.630 0.00 0.00 36.88 2.94
273 319 3.940221 AGGACAGGTACGATCGATATAGC 59.060 47.826 24.34 13.40 0.00 2.97
332 388 5.046735 CAGATGAGATCTCCCGTATGGAAAT 60.047 44.000 20.03 2.53 44.57 2.17
339 395 3.317149 TCTCCCGTATGGAAATAGTGTCG 59.683 47.826 1.27 0.00 44.57 4.35
430 761 1.154016 CACGTACGAGCCTGACCAG 60.154 63.158 24.41 0.00 0.00 4.00
461 803 4.336713 GCAAGAGAATGGTCCATAGTTTCC 59.663 45.833 4.33 0.00 0.00 3.13
477 819 7.341769 CCATAGTTTCCTTATCCAATTGACCAA 59.658 37.037 7.12 0.00 0.00 3.67
481 843 7.290014 AGTTTCCTTATCCAATTGACCAAAACT 59.710 33.333 7.12 9.88 0.00 2.66
498 1117 9.880064 GACCAAAACTAGTGAGATTTTCTTTAC 57.120 33.333 0.00 0.00 0.00 2.01
499 1118 9.628500 ACCAAAACTAGTGAGATTTTCTTTACT 57.372 29.630 0.00 0.00 31.94 2.24
561 1201 2.097466 CACAATAATCCTGCCACCGAAC 59.903 50.000 0.00 0.00 0.00 3.95
563 1203 0.179056 ATAATCCTGCCACCGAACCG 60.179 55.000 0.00 0.00 0.00 4.44
635 1280 1.320344 CGAGTCCGAGACCCATTCCA 61.320 60.000 1.06 0.00 38.22 3.53
637 1282 1.486726 GAGTCCGAGACCCATTCCAAT 59.513 52.381 1.06 0.00 32.18 3.16
638 1283 2.698797 GAGTCCGAGACCCATTCCAATA 59.301 50.000 1.06 0.00 32.18 1.90
640 1285 3.716872 AGTCCGAGACCCATTCCAATAAT 59.283 43.478 1.06 0.00 32.18 1.28
641 1286 3.815401 GTCCGAGACCCATTCCAATAATG 59.185 47.826 0.00 0.00 0.00 1.90
642 1287 3.714280 TCCGAGACCCATTCCAATAATGA 59.286 43.478 0.00 0.00 0.00 2.57
646 1291 6.149474 CCGAGACCCATTCCAATAATGAATAC 59.851 42.308 0.00 0.00 31.42 1.89
676 1337 9.927668 ATGAAATAAACCGACAAAATGAAGAAT 57.072 25.926 0.00 0.00 0.00 2.40
677 1338 9.405587 TGAAATAAACCGACAAAATGAAGAATC 57.594 29.630 0.00 0.00 0.00 2.52
679 1340 7.703058 ATAAACCGACAAAATGAAGAATCCT 57.297 32.000 0.00 0.00 0.00 3.24
855 2692 0.742635 CCTCGCAAGCTTCTTCTCCC 60.743 60.000 0.00 0.00 37.18 4.30
856 2693 0.248843 CTCGCAAGCTTCTTCTCCCT 59.751 55.000 0.00 0.00 37.18 4.20
857 2694 0.687354 TCGCAAGCTTCTTCTCCCTT 59.313 50.000 0.00 0.00 37.18 3.95
897 2738 1.361668 CCTTCCGACGCAGGTCATTG 61.362 60.000 3.65 0.00 43.61 2.82
970 2818 0.620556 AACCCACCAGCTGATCGATT 59.379 50.000 17.39 0.66 0.00 3.34
985 2836 3.332761 TCGATTGTTTGCTGTGTGAAC 57.667 42.857 0.00 0.00 0.00 3.18
1029 2880 2.487986 CCACCAGAAGCTCCTCAACTTT 60.488 50.000 0.00 0.00 0.00 2.66
1086 2937 0.257616 CGAGGTCCTTCTCCTCCTCT 59.742 60.000 0.00 0.00 46.09 3.69
1090 2941 1.491668 GTCCTTCTCCTCCTCTTCCC 58.508 60.000 0.00 0.00 0.00 3.97
1098 2949 1.758906 CTCCTCTTCCCCCTCCGTC 60.759 68.421 0.00 0.00 0.00 4.79
1101 2952 1.758906 CTCTTCCCCCTCCGTCTCC 60.759 68.421 0.00 0.00 0.00 3.71
1145 2996 3.766691 CTACCCCACCACGGACGG 61.767 72.222 0.00 0.00 36.56 4.79
1314 3171 2.566529 CACGTCTACTCGCTGGCA 59.433 61.111 0.00 0.00 0.00 4.92
1464 3321 1.303236 CATCTTCACCGGCCACCAA 60.303 57.895 0.00 0.00 0.00 3.67
1590 3447 1.583495 CCACCAGCTACGTCGAGACA 61.583 60.000 0.00 0.00 0.00 3.41
1593 3450 0.240145 CCAGCTACGTCGAGACACAA 59.760 55.000 0.00 0.00 0.00 3.33
1719 3576 1.666553 CTTCAAGGTGTGGCGCGTA 60.667 57.895 8.43 0.00 0.00 4.42
1965 3822 2.646719 GTCGTGTACGTGGGCTCA 59.353 61.111 0.00 0.00 40.80 4.26
1998 3855 2.254508 GTCACCTACTGGTACTGGGTT 58.745 52.381 0.00 0.00 46.60 4.11
2184 4059 4.980805 GGACCCGTGAAGTGCGCA 62.981 66.667 5.66 5.66 0.00 6.09
2202 4080 3.474570 GCCATGGACGAGGAGGCT 61.475 66.667 18.40 0.00 42.01 4.58
2226 4107 4.851179 GGTTCGGGTGGGGATCGC 62.851 72.222 0.06 0.06 0.00 4.58
2335 4282 2.769617 CGTTAACGGAGCGCACAG 59.230 61.111 20.24 6.84 35.37 3.66
2336 4283 3.348967 CGTTAACGGAGCGCACAGC 62.349 63.158 20.24 0.00 40.20 4.40
2412 4362 2.591715 GCGCCATACCAGCCGATT 60.592 61.111 0.00 0.00 0.00 3.34
2413 4363 2.186826 GCGCCATACCAGCCGATTT 61.187 57.895 0.00 0.00 0.00 2.17
2545 4498 9.352784 GTACTAGAGAGTGTACATATACGTAGG 57.647 40.741 0.00 0.00 38.92 3.18
2714 4670 3.559238 CCGGAGAGGTGATTTTGTTTG 57.441 47.619 0.00 0.00 34.51 2.93
2715 4671 2.884639 CCGGAGAGGTGATTTTGTTTGT 59.115 45.455 0.00 0.00 34.51 2.83
2716 4672 4.069304 CCGGAGAGGTGATTTTGTTTGTA 58.931 43.478 0.00 0.00 34.51 2.41
2717 4673 4.517453 CCGGAGAGGTGATTTTGTTTGTAA 59.483 41.667 0.00 0.00 34.51 2.41
2718 4674 5.449304 CGGAGAGGTGATTTTGTTTGTAAC 58.551 41.667 0.00 0.00 0.00 2.50
2719 4675 5.562113 CGGAGAGGTGATTTTGTTTGTAACC 60.562 44.000 0.00 0.00 0.00 2.85
2720 4676 5.300792 GGAGAGGTGATTTTGTTTGTAACCA 59.699 40.000 0.00 0.00 0.00 3.67
2721 4677 6.015434 GGAGAGGTGATTTTGTTTGTAACCAT 60.015 38.462 0.00 0.00 0.00 3.55
2722 4678 7.360113 AGAGGTGATTTTGTTTGTAACCATT 57.640 32.000 0.00 0.00 0.00 3.16
2723 4679 7.209475 AGAGGTGATTTTGTTTGTAACCATTG 58.791 34.615 0.00 0.00 0.00 2.82
2724 4680 5.757808 AGGTGATTTTGTTTGTAACCATTGC 59.242 36.000 0.00 0.00 0.00 3.56
2725 4681 5.332959 GGTGATTTTGTTTGTAACCATTGCG 60.333 40.000 0.00 0.00 0.00 4.85
2726 4682 5.460419 GTGATTTTGTTTGTAACCATTGCGA 59.540 36.000 0.00 0.00 0.00 5.10
2727 4683 6.145371 GTGATTTTGTTTGTAACCATTGCGAT 59.855 34.615 0.00 0.00 0.00 4.58
2728 4684 5.896922 TTTTGTTTGTAACCATTGCGATG 57.103 34.783 6.99 6.99 0.00 3.84
2738 4694 1.469917 CATTGCGATGGATTTCGTGC 58.530 50.000 5.98 0.00 41.16 5.34
2739 4695 1.093972 ATTGCGATGGATTTCGTGCA 58.906 45.000 0.00 0.00 41.16 4.57
2740 4696 0.877743 TTGCGATGGATTTCGTGCAA 59.122 45.000 0.00 0.00 41.16 4.08
2741 4697 0.167908 TGCGATGGATTTCGTGCAAC 59.832 50.000 0.00 0.00 41.16 4.17
2742 4698 0.167908 GCGATGGATTTCGTGCAACA 59.832 50.000 0.00 0.00 41.16 3.33
2743 4699 1.400888 GCGATGGATTTCGTGCAACAA 60.401 47.619 0.00 0.00 41.16 2.83
2744 4700 2.508867 CGATGGATTTCGTGCAACAAG 58.491 47.619 0.00 0.00 35.74 3.16
2745 4701 2.728846 CGATGGATTTCGTGCAACAAGG 60.729 50.000 0.00 0.00 35.74 3.61
2746 4702 1.686355 TGGATTTCGTGCAACAAGGT 58.314 45.000 0.00 0.00 35.74 3.50
2747 4703 1.336440 TGGATTTCGTGCAACAAGGTG 59.664 47.619 0.00 0.00 35.74 4.00
2748 4704 1.336755 GGATTTCGTGCAACAAGGTGT 59.663 47.619 0.00 0.00 35.74 4.16
2749 4705 2.384382 GATTTCGTGCAACAAGGTGTG 58.616 47.619 0.00 0.00 35.74 3.82
2750 4706 0.179150 TTTCGTGCAACAAGGTGTGC 60.179 50.000 0.00 0.00 35.74 4.57
2751 4707 1.308783 TTCGTGCAACAAGGTGTGCA 61.309 50.000 0.00 0.00 35.74 4.57
2752 4708 1.100463 TCGTGCAACAAGGTGTGCAT 61.100 50.000 1.20 0.00 37.00 3.96
2753 4709 0.248990 CGTGCAACAAGGTGTGCATT 60.249 50.000 1.20 0.00 37.00 3.56
2754 4710 1.001924 CGTGCAACAAGGTGTGCATTA 60.002 47.619 1.20 0.00 37.00 1.90
2755 4711 2.542618 CGTGCAACAAGGTGTGCATTAA 60.543 45.455 1.20 0.00 37.00 1.40
2756 4712 3.452474 GTGCAACAAGGTGTGCATTAAA 58.548 40.909 1.20 0.00 37.00 1.52
2757 4713 4.057432 GTGCAACAAGGTGTGCATTAAAT 58.943 39.130 1.20 0.00 37.00 1.40
2758 4714 4.056740 TGCAACAAGGTGTGCATTAAATG 58.943 39.130 0.00 0.00 32.45 2.32
2759 4715 4.202192 TGCAACAAGGTGTGCATTAAATGA 60.202 37.500 0.00 0.00 32.45 2.57
2760 4716 4.931002 GCAACAAGGTGTGCATTAAATGAT 59.069 37.500 0.00 0.00 0.00 2.45
2761 4717 5.409214 GCAACAAGGTGTGCATTAAATGATT 59.591 36.000 0.00 0.00 0.00 2.57
2762 4718 6.619018 GCAACAAGGTGTGCATTAAATGATTG 60.619 38.462 0.00 0.00 0.00 2.67
2763 4719 6.100404 ACAAGGTGTGCATTAAATGATTGT 57.900 33.333 0.00 0.00 0.00 2.71
2764 4720 6.523840 ACAAGGTGTGCATTAAATGATTGTT 58.476 32.000 0.00 0.00 0.00 2.83
2765 4721 7.665690 ACAAGGTGTGCATTAAATGATTGTTA 58.334 30.769 0.00 0.00 0.00 2.41
2766 4722 8.147058 ACAAGGTGTGCATTAAATGATTGTTAA 58.853 29.630 0.00 0.00 0.00 2.01
2767 4723 8.434661 CAAGGTGTGCATTAAATGATTGTTAAC 58.565 33.333 0.00 0.00 0.00 2.01
2768 4724 7.895759 AGGTGTGCATTAAATGATTGTTAACT 58.104 30.769 7.22 0.00 0.00 2.24
2769 4725 8.367156 AGGTGTGCATTAAATGATTGTTAACTT 58.633 29.630 7.22 0.00 0.00 2.66
2770 4726 8.434661 GGTGTGCATTAAATGATTGTTAACTTG 58.565 33.333 7.22 0.00 0.00 3.16
2771 4727 8.977505 GTGTGCATTAAATGATTGTTAACTTGT 58.022 29.630 7.22 0.00 0.00 3.16
2772 4728 9.539825 TGTGCATTAAATGATTGTTAACTTGTT 57.460 25.926 7.22 0.00 0.00 2.83
2775 4731 9.316859 GCATTAAATGATTGTTAACTTGTTTGC 57.683 29.630 7.22 0.05 0.00 3.68
2776 4732 9.810231 CATTAAATGATTGTTAACTTGTTTGCC 57.190 29.630 7.22 0.00 0.00 4.52
2777 4733 9.777297 ATTAAATGATTGTTAACTTGTTTGCCT 57.223 25.926 7.22 0.00 0.00 4.75
2780 4736 9.777297 AAATGATTGTTAACTTGTTTGCCTAAT 57.223 25.926 7.22 0.00 0.00 1.73
2781 4737 9.777297 AATGATTGTTAACTTGTTTGCCTAATT 57.223 25.926 7.22 0.00 0.00 1.40
2782 4738 8.810652 TGATTGTTAACTTGTTTGCCTAATTC 57.189 30.769 7.22 0.00 0.00 2.17
2783 4739 8.417106 TGATTGTTAACTTGTTTGCCTAATTCA 58.583 29.630 7.22 0.00 0.00 2.57
2784 4740 7.995463 TTGTTAACTTGTTTGCCTAATTCAC 57.005 32.000 7.22 0.00 0.00 3.18
2785 4741 7.101652 TGTTAACTTGTTTGCCTAATTCACA 57.898 32.000 7.22 0.00 0.00 3.58
2786 4742 7.721402 TGTTAACTTGTTTGCCTAATTCACAT 58.279 30.769 7.22 0.00 0.00 3.21
2787 4743 7.865385 TGTTAACTTGTTTGCCTAATTCACATC 59.135 33.333 7.22 0.00 0.00 3.06
2788 4744 6.655078 AACTTGTTTGCCTAATTCACATCT 57.345 33.333 0.00 0.00 0.00 2.90
2789 4745 7.759489 AACTTGTTTGCCTAATTCACATCTA 57.241 32.000 0.00 0.00 0.00 1.98
2790 4746 7.383102 ACTTGTTTGCCTAATTCACATCTAG 57.617 36.000 0.00 0.00 0.00 2.43
2791 4747 7.168219 ACTTGTTTGCCTAATTCACATCTAGA 58.832 34.615 0.00 0.00 0.00 2.43
2792 4748 7.831193 ACTTGTTTGCCTAATTCACATCTAGAT 59.169 33.333 0.00 0.00 0.00 1.98
2793 4749 7.558161 TGTTTGCCTAATTCACATCTAGATG 57.442 36.000 27.63 27.63 44.15 2.90
2818 4774 4.571372 TTTTTAGGGTAACTTGTTGCCG 57.429 40.909 13.00 0.00 0.00 5.69
2819 4775 1.525941 TTAGGGTAACTTGTTGCCGC 58.474 50.000 13.00 7.48 0.00 6.53
2820 4776 0.688487 TAGGGTAACTTGTTGCCGCT 59.312 50.000 13.00 12.92 0.00 5.52
2821 4777 0.179001 AGGGTAACTTGTTGCCGCTT 60.179 50.000 13.00 1.21 0.00 4.68
2822 4778 0.671796 GGGTAACTTGTTGCCGCTTT 59.328 50.000 13.00 0.00 0.00 3.51
2823 4779 1.881324 GGGTAACTTGTTGCCGCTTTA 59.119 47.619 13.00 0.00 0.00 1.85
2824 4780 2.351060 GGGTAACTTGTTGCCGCTTTAC 60.351 50.000 13.00 0.00 0.00 2.01
2825 4781 2.551032 GGTAACTTGTTGCCGCTTTACT 59.449 45.455 4.97 0.00 0.00 2.24
2826 4782 3.004002 GGTAACTTGTTGCCGCTTTACTT 59.996 43.478 4.97 0.00 0.00 2.24
2827 4783 4.213906 GGTAACTTGTTGCCGCTTTACTTA 59.786 41.667 4.97 0.00 0.00 2.24
2828 4784 4.904253 AACTTGTTGCCGCTTTACTTAA 57.096 36.364 0.00 0.00 0.00 1.85
2829 4785 4.483476 ACTTGTTGCCGCTTTACTTAAG 57.517 40.909 0.00 0.00 36.90 1.85
2830 4786 3.252458 ACTTGTTGCCGCTTTACTTAAGG 59.748 43.478 7.53 0.00 34.26 2.69
2831 4787 2.156098 TGTTGCCGCTTTACTTAAGGG 58.844 47.619 7.53 0.00 44.19 3.95
2832 4788 1.135489 GTTGCCGCTTTACTTAAGGGC 60.135 52.381 7.53 9.15 44.20 5.19
2833 4789 1.022451 TGCCGCTTTACTTAAGGGCG 61.022 55.000 19.64 19.64 45.60 6.13
2835 4791 3.148340 CGCTTTACTTAAGGGCGGT 57.852 52.632 19.15 0.00 39.56 5.68
2836 4792 2.298411 CGCTTTACTTAAGGGCGGTA 57.702 50.000 19.15 0.00 39.56 4.02
2837 4793 1.929169 CGCTTTACTTAAGGGCGGTAC 59.071 52.381 19.15 0.00 39.56 3.34
2838 4794 2.417787 CGCTTTACTTAAGGGCGGTACT 60.418 50.000 19.15 0.00 39.56 2.73
2839 4795 3.181487 CGCTTTACTTAAGGGCGGTACTA 60.181 47.826 19.15 0.00 39.56 1.82
2840 4796 4.366586 GCTTTACTTAAGGGCGGTACTAG 58.633 47.826 7.53 0.00 34.26 2.57
2841 4797 4.738839 GCTTTACTTAAGGGCGGTACTAGG 60.739 50.000 7.53 0.00 34.26 3.02
2842 4798 1.117994 ACTTAAGGGCGGTACTAGGC 58.882 55.000 7.53 6.85 0.00 3.93
2843 4799 0.031721 CTTAAGGGCGGTACTAGGCG 59.968 60.000 0.00 0.00 34.74 5.52
2844 4800 2.019897 TTAAGGGCGGTACTAGGCGC 62.020 60.000 0.00 0.00 41.84 6.53
2849 4805 4.564116 CGGTACTAGGCGCCGGTG 62.564 72.222 29.13 21.78 41.60 4.94
2850 4806 4.886121 GGTACTAGGCGCCGGTGC 62.886 72.222 31.86 31.86 0.00 5.01
2866 4822 4.753877 GCGCCGGCCGAAAGTTTC 62.754 66.667 30.73 5.47 40.02 2.78
2867 4823 3.350612 CGCCGGCCGAAAGTTTCA 61.351 61.111 30.73 0.00 40.02 2.69
2868 4824 2.561373 GCCGGCCGAAAGTTTCAG 59.439 61.111 30.73 7.40 0.00 3.02
2869 4825 2.561373 CCGGCCGAAAGTTTCAGC 59.439 61.111 30.73 14.30 32.34 4.26
2871 4827 2.561373 GGCCGAAAGTTTCAGCCG 59.439 61.111 23.57 7.20 42.81 5.52
2872 4828 2.561373 GCCGAAAGTTTCAGCCGG 59.439 61.111 15.67 11.97 42.74 6.13
2873 4829 2.258726 GCCGAAAGTTTCAGCCGGT 61.259 57.895 15.67 0.00 41.95 5.28
2874 4830 1.866925 CCGAAAGTTTCAGCCGGTC 59.133 57.895 15.67 0.00 35.83 4.79
2875 4831 1.491563 CGAAAGTTTCAGCCGGTCG 59.508 57.895 15.67 0.00 0.00 4.79
2876 4832 1.206831 GAAAGTTTCAGCCGGTCGC 59.793 57.895 10.81 0.00 37.98 5.19
2877 4833 1.503818 GAAAGTTTCAGCCGGTCGCA 61.504 55.000 10.81 0.00 41.38 5.10
2878 4834 1.782028 AAAGTTTCAGCCGGTCGCAC 61.782 55.000 1.90 0.00 41.38 5.34
2879 4835 3.723348 GTTTCAGCCGGTCGCACC 61.723 66.667 1.90 0.00 41.38 5.01
2893 4849 3.853330 CACCGCAAGCGTCCGATG 61.853 66.667 13.80 0.00 37.81 3.84
2898 4854 3.197790 CAAGCGTCCGATGGGCTG 61.198 66.667 0.00 0.00 37.06 4.85
2899 4855 4.473520 AAGCGTCCGATGGGCTGG 62.474 66.667 0.00 0.00 37.06 4.85
2902 4858 4.473520 CGTCCGATGGGCTGGCTT 62.474 66.667 0.00 0.00 0.00 4.35
2903 4859 2.514824 GTCCGATGGGCTGGCTTC 60.515 66.667 0.00 0.00 0.00 3.86
2904 4860 3.797353 TCCGATGGGCTGGCTTCC 61.797 66.667 0.00 0.00 0.00 3.46
2905 4861 4.113815 CCGATGGGCTGGCTTCCA 62.114 66.667 0.00 0.00 37.46 3.53
2916 4872 3.987404 GCTTCCAGCCGTTCACAT 58.013 55.556 0.00 0.00 34.48 3.21
2917 4873 1.796796 GCTTCCAGCCGTTCACATC 59.203 57.895 0.00 0.00 34.48 3.06
2918 4874 1.970917 GCTTCCAGCCGTTCACATCG 61.971 60.000 0.00 0.00 34.48 3.84
2919 4875 0.389817 CTTCCAGCCGTTCACATCGA 60.390 55.000 0.00 0.00 0.00 3.59
2920 4876 0.034198 TTCCAGCCGTTCACATCGAA 59.966 50.000 0.00 0.00 0.00 3.71
2921 4877 0.249120 TCCAGCCGTTCACATCGAAT 59.751 50.000 0.00 0.00 35.63 3.34
2922 4878 0.652592 CCAGCCGTTCACATCGAATC 59.347 55.000 0.00 0.00 35.63 2.52
2923 4879 1.645034 CAGCCGTTCACATCGAATCT 58.355 50.000 0.00 0.00 35.63 2.40
2924 4880 2.002586 CAGCCGTTCACATCGAATCTT 58.997 47.619 0.00 0.00 35.63 2.40
2925 4881 2.029728 CAGCCGTTCACATCGAATCTTC 59.970 50.000 0.00 0.00 35.63 2.87
2926 4882 2.093973 AGCCGTTCACATCGAATCTTCT 60.094 45.455 0.00 0.00 35.63 2.85
2927 4883 2.029728 GCCGTTCACATCGAATCTTCTG 59.970 50.000 0.00 0.00 35.63 3.02
2928 4884 3.254060 CCGTTCACATCGAATCTTCTGT 58.746 45.455 0.00 0.00 35.63 3.41
2929 4885 3.679980 CCGTTCACATCGAATCTTCTGTT 59.320 43.478 0.00 0.00 35.63 3.16
2930 4886 4.201628 CCGTTCACATCGAATCTTCTGTTC 60.202 45.833 0.00 0.00 35.63 3.18
2931 4887 4.385748 CGTTCACATCGAATCTTCTGTTCA 59.614 41.667 0.00 0.00 35.63 3.18
2932 4888 5.062683 CGTTCACATCGAATCTTCTGTTCAT 59.937 40.000 0.00 0.00 35.63 2.57
2933 4889 6.473521 GTTCACATCGAATCTTCTGTTCATC 58.526 40.000 0.00 0.00 35.63 2.92
2934 4890 5.111989 TCACATCGAATCTTCTGTTCATCC 58.888 41.667 0.00 0.00 0.00 3.51
2935 4891 4.272018 CACATCGAATCTTCTGTTCATCCC 59.728 45.833 0.00 0.00 0.00 3.85
2936 4892 3.543680 TCGAATCTTCTGTTCATCCCC 57.456 47.619 0.00 0.00 0.00 4.81
2937 4893 3.107601 TCGAATCTTCTGTTCATCCCCT 58.892 45.455 0.00 0.00 0.00 4.79
2938 4894 3.519510 TCGAATCTTCTGTTCATCCCCTT 59.480 43.478 0.00 0.00 0.00 3.95
2939 4895 3.873952 CGAATCTTCTGTTCATCCCCTTC 59.126 47.826 0.00 0.00 0.00 3.46
2940 4896 3.941704 ATCTTCTGTTCATCCCCTTCC 57.058 47.619 0.00 0.00 0.00 3.46
2941 4897 2.921221 TCTTCTGTTCATCCCCTTCCT 58.079 47.619 0.00 0.00 0.00 3.36
2942 4898 2.840651 TCTTCTGTTCATCCCCTTCCTC 59.159 50.000 0.00 0.00 0.00 3.71
2943 4899 2.649742 TCTGTTCATCCCCTTCCTCT 57.350 50.000 0.00 0.00 0.00 3.69
2944 4900 3.776731 TCTGTTCATCCCCTTCCTCTA 57.223 47.619 0.00 0.00 0.00 2.43
2945 4901 3.375699 TCTGTTCATCCCCTTCCTCTAC 58.624 50.000 0.00 0.00 0.00 2.59
2946 4902 3.107601 CTGTTCATCCCCTTCCTCTACA 58.892 50.000 0.00 0.00 0.00 2.74
2947 4903 3.713764 CTGTTCATCCCCTTCCTCTACAT 59.286 47.826 0.00 0.00 0.00 2.29
2948 4904 3.711704 TGTTCATCCCCTTCCTCTACATC 59.288 47.826 0.00 0.00 0.00 3.06
2949 4905 2.598565 TCATCCCCTTCCTCTACATCG 58.401 52.381 0.00 0.00 0.00 3.84
2950 4906 2.091278 TCATCCCCTTCCTCTACATCGT 60.091 50.000 0.00 0.00 0.00 3.73
3266 5222 3.724624 CCCTCTCTTGCAGCTCCT 58.275 61.111 0.00 0.00 0.00 3.69
3267 5223 1.221293 CCCTCTCTTGCAGCTCCTG 59.779 63.158 0.00 0.00 34.12 3.86
3268 5224 1.221293 CCTCTCTTGCAGCTCCTGG 59.779 63.158 0.00 0.00 31.21 4.45
3269 5225 1.449956 CTCTCTTGCAGCTCCTGGC 60.450 63.158 0.00 0.00 42.19 4.85
3270 5226 2.438075 CTCTTGCAGCTCCTGGCC 60.438 66.667 0.00 0.00 43.05 5.36
3271 5227 3.251509 TCTTGCAGCTCCTGGCCA 61.252 61.111 4.71 4.71 43.05 5.36
3272 5228 2.044252 CTTGCAGCTCCTGGCCAT 60.044 61.111 5.51 0.00 43.05 4.40
3273 5229 2.361992 TTGCAGCTCCTGGCCATG 60.362 61.111 5.51 2.84 43.05 3.66
3274 5230 3.949885 TTGCAGCTCCTGGCCATGG 62.950 63.158 5.51 7.63 43.05 3.66
3275 5231 4.119363 GCAGCTCCTGGCCATGGA 62.119 66.667 18.40 19.14 43.05 3.41
3276 5232 2.124403 CAGCTCCTGGCCATGGAC 60.124 66.667 18.40 15.32 43.05 4.02
3277 5233 3.415087 AGCTCCTGGCCATGGACC 61.415 66.667 17.19 16.42 43.05 4.46
3278 5234 4.512914 GCTCCTGGCCATGGACCC 62.513 72.222 17.19 8.46 34.27 4.46
3279 5235 4.181010 CTCCTGGCCATGGACCCG 62.181 72.222 17.19 12.01 0.00 5.28
3281 5237 4.489771 CCTGGCCATGGACCCGTC 62.490 72.222 17.19 0.00 0.00 4.79
3282 5238 3.402681 CTGGCCATGGACCCGTCT 61.403 66.667 17.19 0.00 0.00 4.18
3283 5239 3.687321 CTGGCCATGGACCCGTCTG 62.687 68.421 17.19 0.00 0.00 3.51
3284 5240 4.489771 GGCCATGGACCCGTCTGG 62.490 72.222 18.40 0.00 41.37 3.86
3310 5266 4.476752 GCCCCGCCCGTGATTGTA 62.477 66.667 0.00 0.00 0.00 2.41
3311 5267 2.203015 CCCCGCCCGTGATTGTAG 60.203 66.667 0.00 0.00 0.00 2.74
3312 5268 2.895372 CCCGCCCGTGATTGTAGC 60.895 66.667 0.00 0.00 0.00 3.58
3313 5269 2.186903 CCGCCCGTGATTGTAGCT 59.813 61.111 0.00 0.00 0.00 3.32
3314 5270 1.883084 CCGCCCGTGATTGTAGCTC 60.883 63.158 0.00 0.00 0.00 4.09
3315 5271 1.153647 CGCCCGTGATTGTAGCTCA 60.154 57.895 0.00 0.00 0.00 4.26
3316 5272 1.421410 CGCCCGTGATTGTAGCTCAC 61.421 60.000 0.00 0.00 39.69 3.51
3317 5273 1.090052 GCCCGTGATTGTAGCTCACC 61.090 60.000 0.00 0.00 39.89 4.02
3318 5274 0.249120 CCCGTGATTGTAGCTCACCA 59.751 55.000 0.00 0.00 39.89 4.17
3319 5275 1.359848 CCGTGATTGTAGCTCACCAC 58.640 55.000 0.00 0.00 39.89 4.16
3320 5276 1.359848 CGTGATTGTAGCTCACCACC 58.640 55.000 0.00 0.00 39.89 4.61
3321 5277 1.739067 GTGATTGTAGCTCACCACCC 58.261 55.000 0.00 0.00 37.61 4.61
3322 5278 0.618458 TGATTGTAGCTCACCACCCC 59.382 55.000 0.00 0.00 0.00 4.95
3323 5279 0.618458 GATTGTAGCTCACCACCCCA 59.382 55.000 0.00 0.00 0.00 4.96
3324 5280 1.212935 GATTGTAGCTCACCACCCCAT 59.787 52.381 0.00 0.00 0.00 4.00
3325 5281 0.327924 TTGTAGCTCACCACCCCATG 59.672 55.000 0.00 0.00 0.00 3.66
3333 5289 3.384532 CCACCCCATGGTTGCAGC 61.385 66.667 11.73 0.00 44.75 5.25
3334 5290 2.601067 CACCCCATGGTTGCAGCA 60.601 61.111 11.73 0.00 44.75 4.41
3335 5291 2.601367 ACCCCATGGTTGCAGCAC 60.601 61.111 11.73 0.00 44.75 4.40
3336 5292 3.384532 CCCCATGGTTGCAGCACC 61.385 66.667 11.73 1.07 37.34 5.01
3337 5293 3.751246 CCCATGGTTGCAGCACCG 61.751 66.667 11.73 0.00 40.09 4.94
3338 5294 3.751246 CCATGGTTGCAGCACCGG 61.751 66.667 2.57 0.00 40.09 5.28
3339 5295 3.751246 CATGGTTGCAGCACCGGG 61.751 66.667 6.32 0.00 40.09 5.73
3343 5299 2.281900 GTTGCAGCACCGGGGTTA 60.282 61.111 5.12 0.00 0.00 2.85
3344 5300 2.281900 TTGCAGCACCGGGGTTAC 60.282 61.111 5.12 0.00 0.00 2.50
3345 5301 4.690719 TGCAGCACCGGGGTTACG 62.691 66.667 5.12 0.00 0.00 3.18
3346 5302 4.692475 GCAGCACCGGGGTTACGT 62.692 66.667 5.12 0.00 0.00 3.57
3347 5303 2.031465 CAGCACCGGGGTTACGTT 59.969 61.111 5.12 0.00 0.00 3.99
3348 5304 2.031465 AGCACCGGGGTTACGTTG 59.969 61.111 5.12 0.00 0.00 4.10
3349 5305 3.729698 GCACCGGGGTTACGTTGC 61.730 66.667 5.12 0.00 44.50 4.17
3350 5306 3.051479 CACCGGGGTTACGTTGCC 61.051 66.667 6.32 0.00 0.00 4.52
3351 5307 4.334118 ACCGGGGTTACGTTGCCC 62.334 66.667 16.20 16.20 44.09 5.36
3357 5313 2.748647 GTTACGTTGCCCCGCCAT 60.749 61.111 0.00 0.00 0.00 4.40
3358 5314 2.748251 TTACGTTGCCCCGCCATG 60.748 61.111 0.00 0.00 0.00 3.66
3359 5315 3.255423 TTACGTTGCCCCGCCATGA 62.255 57.895 0.00 0.00 0.00 3.07
3360 5316 3.673956 TACGTTGCCCCGCCATGAG 62.674 63.158 0.00 0.00 0.00 2.90
3363 5319 4.445710 TTGCCCCGCCATGAGCAT 62.446 61.111 0.00 0.00 44.04 3.79
3364 5320 3.961225 TTGCCCCGCCATGAGCATT 62.961 57.895 0.00 0.00 44.04 3.56
3365 5321 3.599704 GCCCCGCCATGAGCATTC 61.600 66.667 0.00 0.00 44.04 2.67
3366 5322 3.282157 CCCCGCCATGAGCATTCG 61.282 66.667 0.00 0.00 44.04 3.34
3367 5323 2.203056 CCCGCCATGAGCATTCGA 60.203 61.111 0.00 0.00 44.04 3.71
3368 5324 2.537560 CCCGCCATGAGCATTCGAC 61.538 63.158 0.00 0.00 44.04 4.20
3369 5325 2.622629 CGCCATGAGCATTCGACG 59.377 61.111 0.00 0.00 44.04 5.12
3370 5326 2.325857 GCCATGAGCATTCGACGC 59.674 61.111 0.00 0.00 42.97 5.19
3371 5327 2.463620 GCCATGAGCATTCGACGCA 61.464 57.895 8.60 0.00 42.97 5.24
3372 5328 1.349627 CCATGAGCATTCGACGCAC 59.650 57.895 8.60 3.00 0.00 5.34
3373 5329 1.360931 CCATGAGCATTCGACGCACA 61.361 55.000 8.27 8.27 34.46 4.57
3374 5330 0.025898 CATGAGCATTCGACGCACAG 59.974 55.000 10.95 2.15 33.46 3.66
3375 5331 1.086067 ATGAGCATTCGACGCACAGG 61.086 55.000 10.95 0.00 33.46 4.00
3376 5332 2.434884 AGCATTCGACGCACAGGG 60.435 61.111 8.60 0.00 0.00 4.45
3377 5333 3.499737 GCATTCGACGCACAGGGG 61.500 66.667 1.17 0.00 0.00 4.79
3378 5334 3.499737 CATTCGACGCACAGGGGC 61.500 66.667 0.00 0.00 0.00 5.80
3379 5335 4.015406 ATTCGACGCACAGGGGCA 62.015 61.111 0.00 0.00 0.00 5.36
3380 5336 3.329542 ATTCGACGCACAGGGGCAT 62.330 57.895 0.00 0.00 0.00 4.40
3381 5337 3.950794 TTCGACGCACAGGGGCATC 62.951 63.158 0.00 0.00 0.00 3.91
3383 5339 4.760047 GACGCACAGGGGCATCGT 62.760 66.667 0.00 0.00 35.98 3.73
3384 5340 4.760047 ACGCACAGGGGCATCGTC 62.760 66.667 0.00 0.00 0.00 4.20
3386 5342 4.408821 GCACAGGGGCATCGTCCA 62.409 66.667 0.00 0.00 0.00 4.02
3387 5343 2.436646 CACAGGGGCATCGTCCAC 60.437 66.667 0.00 0.00 0.00 4.02
3388 5344 2.607750 ACAGGGGCATCGTCCACT 60.608 61.111 0.00 0.00 41.52 4.00
3390 5346 4.101448 AGGGGCATCGTCCACTGC 62.101 66.667 0.00 0.00 38.74 4.40
3394 5350 3.188786 GCATCGTCCACTGCCGTC 61.189 66.667 0.00 0.00 32.15 4.79
3395 5351 2.573869 CATCGTCCACTGCCGTCT 59.426 61.111 0.00 0.00 0.00 4.18
3396 5352 1.517257 CATCGTCCACTGCCGTCTC 60.517 63.158 0.00 0.00 0.00 3.36
3397 5353 3.052620 ATCGTCCACTGCCGTCTCG 62.053 63.158 0.00 0.00 0.00 4.04
3398 5354 4.039357 CGTCCACTGCCGTCTCGT 62.039 66.667 0.00 0.00 0.00 4.18
3399 5355 2.126424 GTCCACTGCCGTCTCGTC 60.126 66.667 0.00 0.00 0.00 4.20
3400 5356 3.733960 TCCACTGCCGTCTCGTCG 61.734 66.667 0.00 0.00 0.00 5.12
3402 5358 4.406173 CACTGCCGTCTCGTCGCT 62.406 66.667 0.00 0.00 0.00 4.93
3403 5359 4.406173 ACTGCCGTCTCGTCGCTG 62.406 66.667 0.00 0.00 0.00 5.18
3404 5360 4.406173 CTGCCGTCTCGTCGCTGT 62.406 66.667 0.00 0.00 0.00 4.40
3405 5361 4.400109 TGCCGTCTCGTCGCTGTC 62.400 66.667 0.00 0.00 0.00 3.51
3406 5362 4.400109 GCCGTCTCGTCGCTGTCA 62.400 66.667 0.00 0.00 0.00 3.58
3407 5363 2.485582 CCGTCTCGTCGCTGTCAT 59.514 61.111 0.00 0.00 0.00 3.06
3408 5364 1.583967 CCGTCTCGTCGCTGTCATC 60.584 63.158 0.00 0.00 0.00 2.92
3409 5365 1.930188 CGTCTCGTCGCTGTCATCG 60.930 63.158 0.00 0.00 0.00 3.84
3410 5366 2.100410 TCTCGTCGCTGTCATCGC 59.900 61.111 0.00 0.00 0.00 4.58
3411 5367 2.951745 CTCGTCGCTGTCATCGCC 60.952 66.667 0.00 0.00 0.00 5.54
3412 5368 3.683587 CTCGTCGCTGTCATCGCCA 62.684 63.158 0.00 0.00 0.00 5.69
3413 5369 2.583319 CGTCGCTGTCATCGCCAT 60.583 61.111 0.00 0.00 0.00 4.40
3414 5370 2.580470 CGTCGCTGTCATCGCCATC 61.580 63.158 0.00 0.00 0.00 3.51
3415 5371 1.519234 GTCGCTGTCATCGCCATCA 60.519 57.895 0.00 0.00 0.00 3.07
3416 5372 1.083806 GTCGCTGTCATCGCCATCAA 61.084 55.000 0.00 0.00 0.00 2.57
3417 5373 1.083806 TCGCTGTCATCGCCATCAAC 61.084 55.000 0.00 0.00 0.00 3.18
3418 5374 1.360931 CGCTGTCATCGCCATCAACA 61.361 55.000 0.00 0.00 0.00 3.33
3419 5375 0.097674 GCTGTCATCGCCATCAACAC 59.902 55.000 0.00 0.00 0.00 3.32
3420 5376 1.730501 CTGTCATCGCCATCAACACT 58.269 50.000 0.00 0.00 0.00 3.55
3421 5377 1.662629 CTGTCATCGCCATCAACACTC 59.337 52.381 0.00 0.00 0.00 3.51
3422 5378 0.647410 GTCATCGCCATCAACACTCG 59.353 55.000 0.00 0.00 0.00 4.18
3423 5379 1.083806 TCATCGCCATCAACACTCGC 61.084 55.000 0.00 0.00 0.00 5.03
3424 5380 1.815421 ATCGCCATCAACACTCGCC 60.815 57.895 0.00 0.00 0.00 5.54
3425 5381 3.499737 CGCCATCAACACTCGCCC 61.500 66.667 0.00 0.00 0.00 6.13
3426 5382 3.134127 GCCATCAACACTCGCCCC 61.134 66.667 0.00 0.00 0.00 5.80
3427 5383 2.438434 CCATCAACACTCGCCCCC 60.438 66.667 0.00 0.00 0.00 5.40
3441 5397 3.922366 CCCCCTGGGTCTCTGTTT 58.078 61.111 12.71 0.00 38.25 2.83
3442 5398 1.685820 CCCCCTGGGTCTCTGTTTC 59.314 63.158 12.71 0.00 38.25 2.78
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.354168 TTCCGGGACCAAGGTTTCCA 61.354 55.000 0.00 0.00 33.01 3.53
1 2 0.608308 CTTCCGGGACCAAGGTTTCC 60.608 60.000 0.00 0.00 0.00 3.13
2 3 1.241990 GCTTCCGGGACCAAGGTTTC 61.242 60.000 0.00 0.00 0.00 2.78
3 4 1.228459 GCTTCCGGGACCAAGGTTT 60.228 57.895 0.00 0.00 0.00 3.27
4 5 2.002018 TTGCTTCCGGGACCAAGGTT 62.002 55.000 0.00 0.00 0.00 3.50
5 6 2.457323 TTGCTTCCGGGACCAAGGT 61.457 57.895 0.00 0.00 0.00 3.50
6 7 1.971695 GTTGCTTCCGGGACCAAGG 60.972 63.158 0.00 0.00 0.00 3.61
7 8 0.955919 GAGTTGCTTCCGGGACCAAG 60.956 60.000 0.00 0.00 0.00 3.61
8 9 1.072505 GAGTTGCTTCCGGGACCAA 59.927 57.895 0.00 0.25 0.00 3.67
9 10 2.747686 GAGTTGCTTCCGGGACCA 59.252 61.111 0.00 0.00 0.00 4.02
10 11 2.434359 CGAGTTGCTTCCGGGACC 60.434 66.667 0.00 0.00 0.00 4.46
11 12 3.119096 GCGAGTTGCTTCCGGGAC 61.119 66.667 0.00 0.00 41.73 4.46
12 13 3.621805 TGCGAGTTGCTTCCGGGA 61.622 61.111 0.00 0.00 46.63 5.14
13 14 3.423154 GTGCGAGTTGCTTCCGGG 61.423 66.667 0.00 0.00 46.63 5.73
14 15 2.664851 TGTGCGAGTTGCTTCCGG 60.665 61.111 3.50 0.00 46.63 5.14
15 16 2.551270 GTGTGCGAGTTGCTTCCG 59.449 61.111 3.50 0.00 46.63 4.30
16 17 0.942410 TACGTGTGCGAGTTGCTTCC 60.942 55.000 3.50 0.00 46.63 3.46
17 18 1.068474 ATACGTGTGCGAGTTGCTTC 58.932 50.000 3.50 0.00 46.63 3.86
18 19 0.790207 CATACGTGTGCGAGTTGCTT 59.210 50.000 3.50 0.00 46.63 3.91
19 20 0.319555 ACATACGTGTGCGAGTTGCT 60.320 50.000 12.67 0.00 46.63 3.91
20 21 1.058695 GTACATACGTGTGCGAGTTGC 59.941 52.381 12.67 0.00 46.70 4.17
33 34 0.599204 CCGCCATGGACCGTACATAC 60.599 60.000 18.40 0.00 42.00 2.39
34 35 1.044231 ACCGCCATGGACCGTACATA 61.044 55.000 18.40 0.00 42.00 2.29
35 36 2.363975 ACCGCCATGGACCGTACAT 61.364 57.895 18.40 0.00 42.00 2.29
36 37 2.998480 ACCGCCATGGACCGTACA 60.998 61.111 18.40 0.00 42.00 2.90
37 38 2.510691 CACCGCCATGGACCGTAC 60.511 66.667 18.40 0.00 42.00 3.67
38 39 3.776781 CCACCGCCATGGACCGTA 61.777 66.667 18.40 0.00 43.02 4.02
67 68 1.730064 TCGTCTCCGTTAAATGCAAGC 59.270 47.619 0.00 0.00 35.01 4.01
68 69 2.222819 GCTCGTCTCCGTTAAATGCAAG 60.223 50.000 0.00 0.00 35.01 4.01
69 70 1.730064 GCTCGTCTCCGTTAAATGCAA 59.270 47.619 0.00 0.00 35.01 4.08
70 71 1.355971 GCTCGTCTCCGTTAAATGCA 58.644 50.000 0.00 0.00 35.01 3.96
71 72 0.651031 GGCTCGTCTCCGTTAAATGC 59.349 55.000 0.00 0.00 35.01 3.56
72 73 0.921347 CGGCTCGTCTCCGTTAAATG 59.079 55.000 4.97 0.00 41.85 2.32
73 74 3.340727 CGGCTCGTCTCCGTTAAAT 57.659 52.632 4.97 0.00 41.85 1.40
108 117 2.126110 GCAAAATCGGTTGGGCGG 60.126 61.111 0.00 0.00 0.00 6.13
110 119 2.264480 GGGCAAAATCGGTTGGGC 59.736 61.111 0.00 0.00 0.00 5.36
115 124 2.272447 CCCAACGGGCAAAATCGGT 61.272 57.895 0.00 0.00 35.35 4.69
130 139 1.300963 GGTGCATGCTCTTCTCCCA 59.699 57.895 20.33 0.00 0.00 4.37
131 140 1.028868 GTGGTGCATGCTCTTCTCCC 61.029 60.000 20.33 7.64 0.00 4.30
139 148 1.238439 GTGTACAAGTGGTGCATGCT 58.762 50.000 20.33 0.00 44.13 3.79
171 180 1.334556 TGTGTTGTGCAGAGAACATGC 59.665 47.619 8.64 0.00 37.65 4.06
172 181 3.696281 TTGTGTTGTGCAGAGAACATG 57.304 42.857 8.64 0.00 37.65 3.21
173 182 3.696051 ACTTTGTGTTGTGCAGAGAACAT 59.304 39.130 8.64 0.00 37.65 2.71
174 183 3.081061 ACTTTGTGTTGTGCAGAGAACA 58.919 40.909 0.00 0.00 33.13 3.18
175 184 3.126858 TGACTTTGTGTTGTGCAGAGAAC 59.873 43.478 0.00 0.00 0.00 3.01
177 186 2.984562 TGACTTTGTGTTGTGCAGAGA 58.015 42.857 0.00 0.00 0.00 3.10
178 187 3.313249 TGATGACTTTGTGTTGTGCAGAG 59.687 43.478 0.00 0.00 0.00 3.35
229 273 1.606313 CCAATTTGGTGGGCGGAGT 60.606 57.895 7.31 0.00 34.77 3.85
273 319 1.078143 GAGCCACCCAAGCCTACAG 60.078 63.158 0.00 0.00 0.00 2.74
288 336 1.464997 GGTTTGAGTGTTGGATCGAGC 59.535 52.381 0.00 0.00 0.00 5.03
332 388 7.604549 TGGAAAAACTGTATGTATCGACACTA 58.395 34.615 0.00 0.00 38.76 2.74
339 395 6.879458 ACTCCACTGGAAAAACTGTATGTATC 59.121 38.462 0.00 0.00 0.00 2.24
378 577 1.067142 TGCACTCGGTCCATACTCAAC 60.067 52.381 0.00 0.00 0.00 3.18
390 589 4.036852 TGAGATCACTAGTATTGCACTCGG 59.963 45.833 0.00 0.00 38.80 4.63
430 761 2.541762 GACCATTCTCTTGCGATGCTAC 59.458 50.000 0.00 0.00 0.00 3.58
452 789 7.880160 TGGTCAATTGGATAAGGAAACTATG 57.120 36.000 5.42 0.00 42.68 2.23
461 803 8.335532 TCACTAGTTTTGGTCAATTGGATAAG 57.664 34.615 5.42 0.00 0.00 1.73
510 1129 8.421249 TCATTATTGGATGGTTTCTTCACTTT 57.579 30.769 0.00 0.00 0.00 2.66
547 1175 4.096003 CCGGTTCGGTGGCAGGAT 62.096 66.667 0.00 0.00 42.73 3.24
577 1217 1.006571 CAACAGTGGGTACGCGACT 60.007 57.895 15.93 1.20 0.00 4.18
578 1218 2.025418 CCAACAGTGGGTACGCGAC 61.025 63.158 15.93 6.63 41.77 5.19
579 1219 2.340809 CCAACAGTGGGTACGCGA 59.659 61.111 15.93 0.00 41.77 5.87
695 2507 4.713321 CCAGGGGTCTGATTTGATTGATTT 59.287 41.667 0.00 0.00 43.49 2.17
897 2738 1.202818 AGGAAAGGGAGCCGAATATGC 60.203 52.381 0.00 0.00 0.00 3.14
948 2792 1.308069 CGATCAGCTGGTGGGTTTGG 61.308 60.000 15.13 0.00 0.00 3.28
955 2803 2.730090 GCAAACAATCGATCAGCTGGTG 60.730 50.000 15.13 4.08 0.00 4.17
970 2818 1.472082 CCACAGTTCACACAGCAAACA 59.528 47.619 0.00 0.00 0.00 2.83
985 2836 0.887836 CCCATGGATCGATGCCACAG 60.888 60.000 15.22 11.33 38.44 3.66
1101 2952 0.031314 AGCTGTAGCCGTCATCATCG 59.969 55.000 0.00 0.00 43.38 3.84
1113 2964 0.382515 GGTAGGACGAGCAGCTGTAG 59.617 60.000 16.64 9.49 0.00 2.74
1533 3390 1.183549 GGTAGTCCTTGAGCTTCGGA 58.816 55.000 0.00 0.00 0.00 4.55
1719 3576 1.901085 GAGGCACTTGGAGTCCGAT 59.099 57.895 4.30 0.00 41.55 4.18
1965 3822 3.771160 GTGACCAGCCCGTCCGAT 61.771 66.667 0.00 0.00 31.35 4.18
1998 3855 2.515290 TATCTCGCCTCGCCGTCA 60.515 61.111 0.00 0.00 0.00 4.35
2183 4058 2.503061 CCTCCTCGTCCATGGCTG 59.497 66.667 6.96 1.19 0.00 4.85
2184 4059 3.474570 GCCTCCTCGTCCATGGCT 61.475 66.667 6.96 0.00 40.36 4.75
2226 4107 2.025418 GCTGTACACCACGAACCGG 61.025 63.158 0.00 0.00 0.00 5.28
2318 4265 2.769617 CTGTGCGCTCCGTTAACG 59.230 61.111 20.99 20.99 39.44 3.18
2319 4266 2.227968 CTGCTGTGCGCTCCGTTAAC 62.228 60.000 9.73 0.00 40.11 2.01
2320 4267 2.027073 CTGCTGTGCGCTCCGTTAA 61.027 57.895 9.73 0.00 40.11 2.01
2321 4268 2.432456 CTGCTGTGCGCTCCGTTA 60.432 61.111 9.73 0.00 40.11 3.18
2436 4389 4.314440 TTGCTTCGCCCTCACGCT 62.314 61.111 0.00 0.00 0.00 5.07
2462 4415 2.510464 TTCCATGCGCGCACGTAT 60.510 55.556 39.05 19.06 46.07 3.06
2545 4498 0.318445 ACGCACAACTCGTACTGGTC 60.318 55.000 0.00 0.00 38.52 4.02
2695 4651 5.449304 GTTACAAACAAAATCACCTCTCCG 58.551 41.667 0.00 0.00 0.00 4.63
2697 4653 6.385649 TGGTTACAAACAAAATCACCTCTC 57.614 37.500 0.00 0.00 0.00 3.20
2703 4659 5.592054 TCGCAATGGTTACAAACAAAATCA 58.408 33.333 0.00 0.00 0.00 2.57
2704 4660 6.400940 CCATCGCAATGGTTACAAACAAAATC 60.401 38.462 0.00 0.00 46.43 2.17
2705 4661 5.407995 CCATCGCAATGGTTACAAACAAAAT 59.592 36.000 0.00 0.00 46.43 1.82
2706 4662 4.747108 CCATCGCAATGGTTACAAACAAAA 59.253 37.500 0.00 0.00 46.43 2.44
2707 4663 4.302455 CCATCGCAATGGTTACAAACAAA 58.698 39.130 0.00 0.00 46.43 2.83
2708 4664 3.906998 CCATCGCAATGGTTACAAACAA 58.093 40.909 0.00 0.00 46.43 2.83
2709 4665 3.567576 CCATCGCAATGGTTACAAACA 57.432 42.857 0.00 0.00 46.43 2.83
2719 4675 1.202166 TGCACGAAATCCATCGCAATG 60.202 47.619 0.00 0.00 46.51 2.82
2720 4676 1.093972 TGCACGAAATCCATCGCAAT 58.906 45.000 0.00 0.00 46.51 3.56
2721 4677 0.877743 TTGCACGAAATCCATCGCAA 59.122 45.000 0.00 0.00 46.51 4.85
2722 4678 0.167908 GTTGCACGAAATCCATCGCA 59.832 50.000 0.00 0.00 46.51 5.10
2723 4679 0.167908 TGTTGCACGAAATCCATCGC 59.832 50.000 0.00 0.00 46.51 4.58
2725 4681 2.228822 ACCTTGTTGCACGAAATCCATC 59.771 45.455 0.00 0.00 0.00 3.51
2726 4682 2.030007 CACCTTGTTGCACGAAATCCAT 60.030 45.455 0.00 0.00 0.00 3.41
2727 4683 1.336440 CACCTTGTTGCACGAAATCCA 59.664 47.619 0.00 0.00 0.00 3.41
2728 4684 1.336755 ACACCTTGTTGCACGAAATCC 59.663 47.619 0.00 0.00 0.00 3.01
2729 4685 2.384382 CACACCTTGTTGCACGAAATC 58.616 47.619 0.00 0.00 0.00 2.17
2730 4686 1.535860 GCACACCTTGTTGCACGAAAT 60.536 47.619 0.00 0.00 0.00 2.17
2731 4687 0.179150 GCACACCTTGTTGCACGAAA 60.179 50.000 0.00 0.00 0.00 3.46
2732 4688 1.308783 TGCACACCTTGTTGCACGAA 61.309 50.000 0.00 0.00 32.45 3.85
2733 4689 1.100463 ATGCACACCTTGTTGCACGA 61.100 50.000 0.00 0.00 37.28 4.35
2734 4690 0.248990 AATGCACACCTTGTTGCACG 60.249 50.000 0.00 0.00 37.28 5.34
2735 4691 2.791383 TAATGCACACCTTGTTGCAC 57.209 45.000 0.00 0.00 37.28 4.57
2736 4692 3.808466 TTTAATGCACACCTTGTTGCA 57.192 38.095 0.00 0.00 38.21 4.08
2737 4693 4.305769 TCATTTAATGCACACCTTGTTGC 58.694 39.130 0.00 0.00 0.00 4.17
2738 4694 6.424509 ACAATCATTTAATGCACACCTTGTTG 59.575 34.615 0.00 0.00 0.00 3.33
2739 4695 6.523840 ACAATCATTTAATGCACACCTTGTT 58.476 32.000 0.00 0.00 0.00 2.83
2740 4696 6.100404 ACAATCATTTAATGCACACCTTGT 57.900 33.333 0.00 1.37 0.00 3.16
2741 4697 8.434661 GTTAACAATCATTTAATGCACACCTTG 58.565 33.333 0.00 0.85 0.00 3.61
2742 4698 8.367156 AGTTAACAATCATTTAATGCACACCTT 58.633 29.630 8.61 0.00 0.00 3.50
2743 4699 7.895759 AGTTAACAATCATTTAATGCACACCT 58.104 30.769 8.61 0.00 0.00 4.00
2744 4700 8.434661 CAAGTTAACAATCATTTAATGCACACC 58.565 33.333 8.61 0.00 0.00 4.16
2745 4701 8.977505 ACAAGTTAACAATCATTTAATGCACAC 58.022 29.630 8.61 0.00 0.00 3.82
2746 4702 9.539825 AACAAGTTAACAATCATTTAATGCACA 57.460 25.926 8.61 0.00 0.00 4.57
2749 4705 9.316859 GCAAACAAGTTAACAATCATTTAATGC 57.683 29.630 8.61 1.85 0.00 3.56
2750 4706 9.810231 GGCAAACAAGTTAACAATCATTTAATG 57.190 29.630 8.61 0.00 0.00 1.90
2751 4707 9.777297 AGGCAAACAAGTTAACAATCATTTAAT 57.223 25.926 8.61 0.00 0.00 1.40
2754 4710 9.777297 ATTAGGCAAACAAGTTAACAATCATTT 57.223 25.926 8.61 0.00 0.00 2.32
2755 4711 9.777297 AATTAGGCAAACAAGTTAACAATCATT 57.223 25.926 8.61 0.00 0.00 2.57
2756 4712 9.423061 GAATTAGGCAAACAAGTTAACAATCAT 57.577 29.630 8.61 0.00 0.00 2.45
2757 4713 8.417106 TGAATTAGGCAAACAAGTTAACAATCA 58.583 29.630 8.61 0.00 0.00 2.57
2758 4714 8.699749 GTGAATTAGGCAAACAAGTTAACAATC 58.300 33.333 8.61 0.00 0.00 2.67
2759 4715 8.200792 TGTGAATTAGGCAAACAAGTTAACAAT 58.799 29.630 8.61 0.00 0.00 2.71
2760 4716 7.548097 TGTGAATTAGGCAAACAAGTTAACAA 58.452 30.769 8.61 0.00 0.00 2.83
2761 4717 7.101652 TGTGAATTAGGCAAACAAGTTAACA 57.898 32.000 8.61 0.00 0.00 2.41
2762 4718 8.082242 AGATGTGAATTAGGCAAACAAGTTAAC 58.918 33.333 0.00 0.00 0.00 2.01
2763 4719 8.177119 AGATGTGAATTAGGCAAACAAGTTAA 57.823 30.769 0.00 0.00 0.00 2.01
2764 4720 7.759489 AGATGTGAATTAGGCAAACAAGTTA 57.241 32.000 0.00 0.00 0.00 2.24
2765 4721 6.655078 AGATGTGAATTAGGCAAACAAGTT 57.345 33.333 0.00 0.00 0.00 2.66
2766 4722 7.168219 TCTAGATGTGAATTAGGCAAACAAGT 58.832 34.615 0.00 0.00 0.00 3.16
2767 4723 7.615582 TCTAGATGTGAATTAGGCAAACAAG 57.384 36.000 0.00 0.00 0.00 3.16
2768 4724 7.988737 CATCTAGATGTGAATTAGGCAAACAA 58.011 34.615 22.42 0.00 34.23 2.83
2769 4725 7.558161 CATCTAGATGTGAATTAGGCAAACA 57.442 36.000 22.42 0.00 34.23 2.83
2797 4753 3.243468 GCGGCAACAAGTTACCCTAAAAA 60.243 43.478 0.00 0.00 0.00 1.94
2798 4754 2.293955 GCGGCAACAAGTTACCCTAAAA 59.706 45.455 0.00 0.00 0.00 1.52
2799 4755 1.881324 GCGGCAACAAGTTACCCTAAA 59.119 47.619 0.00 0.00 0.00 1.85
2800 4756 1.072648 AGCGGCAACAAGTTACCCTAA 59.927 47.619 1.45 0.00 0.00 2.69
2801 4757 0.688487 AGCGGCAACAAGTTACCCTA 59.312 50.000 1.45 0.00 0.00 3.53
2802 4758 0.179001 AAGCGGCAACAAGTTACCCT 60.179 50.000 1.45 0.00 0.00 4.34
2803 4759 0.671796 AAAGCGGCAACAAGTTACCC 59.328 50.000 1.45 0.00 0.00 3.69
2804 4760 2.551032 AGTAAAGCGGCAACAAGTTACC 59.449 45.455 1.45 0.00 0.00 2.85
2805 4761 3.891056 AGTAAAGCGGCAACAAGTTAC 57.109 42.857 1.45 1.28 0.00 2.50
2806 4762 5.049267 CCTTAAGTAAAGCGGCAACAAGTTA 60.049 40.000 1.45 0.00 33.49 2.24
2807 4763 4.261447 CCTTAAGTAAAGCGGCAACAAGTT 60.261 41.667 1.45 0.00 33.49 2.66
2808 4764 3.252458 CCTTAAGTAAAGCGGCAACAAGT 59.748 43.478 1.45 0.00 33.49 3.16
2809 4765 3.365969 CCCTTAAGTAAAGCGGCAACAAG 60.366 47.826 1.45 0.00 33.49 3.16
2810 4766 2.554893 CCCTTAAGTAAAGCGGCAACAA 59.445 45.455 1.45 0.00 33.49 2.83
2811 4767 2.156098 CCCTTAAGTAAAGCGGCAACA 58.844 47.619 1.45 0.00 33.49 3.33
2812 4768 1.135489 GCCCTTAAGTAAAGCGGCAAC 60.135 52.381 11.86 0.00 44.57 4.17
2813 4769 1.170442 GCCCTTAAGTAAAGCGGCAA 58.830 50.000 11.86 0.00 44.57 4.52
2814 4770 1.022451 CGCCCTTAAGTAAAGCGGCA 61.022 55.000 15.60 0.00 45.03 5.69
2815 4771 1.719709 CGCCCTTAAGTAAAGCGGC 59.280 57.895 14.85 11.61 43.07 6.53
2817 4773 1.929169 GTACCGCCCTTAAGTAAAGCG 59.071 52.381 15.41 15.41 46.04 4.68
2818 4774 3.257469 AGTACCGCCCTTAAGTAAAGC 57.743 47.619 0.97 0.00 33.49 3.51
2819 4775 4.738839 GCCTAGTACCGCCCTTAAGTAAAG 60.739 50.000 0.97 0.00 34.73 1.85
2820 4776 3.132824 GCCTAGTACCGCCCTTAAGTAAA 59.867 47.826 0.97 0.00 0.00 2.01
2821 4777 2.695147 GCCTAGTACCGCCCTTAAGTAA 59.305 50.000 0.97 0.00 0.00 2.24
2822 4778 2.310538 GCCTAGTACCGCCCTTAAGTA 58.689 52.381 0.97 0.00 0.00 2.24
2823 4779 1.117994 GCCTAGTACCGCCCTTAAGT 58.882 55.000 0.97 0.00 0.00 2.24
2824 4780 0.031721 CGCCTAGTACCGCCCTTAAG 59.968 60.000 0.00 0.00 0.00 1.85
2825 4781 2.019897 GCGCCTAGTACCGCCCTTAA 62.020 60.000 0.00 0.00 44.10 1.85
2826 4782 2.492773 GCGCCTAGTACCGCCCTTA 61.493 63.158 0.00 0.00 44.10 2.69
2827 4783 3.846430 GCGCCTAGTACCGCCCTT 61.846 66.667 0.00 0.00 44.10 3.95
2832 4788 4.564116 CACCGGCGCCTAGTACCG 62.564 72.222 26.68 9.09 46.50 4.02
2833 4789 4.886121 GCACCGGCGCCTAGTACC 62.886 72.222 26.68 11.99 0.00 3.34
2849 4805 4.753877 GAAACTTTCGGCCGGCGC 62.754 66.667 27.83 12.82 0.00 6.53
2850 4806 3.308878 CTGAAACTTTCGGCCGGCG 62.309 63.158 27.83 16.23 0.00 6.46
2851 4807 2.561373 CTGAAACTTTCGGCCGGC 59.439 61.111 27.83 21.18 0.00 6.13
2856 4812 1.866925 GACCGGCTGAAACTTTCGG 59.133 57.895 0.00 6.03 45.42 4.30
2857 4813 1.491563 CGACCGGCTGAAACTTTCG 59.508 57.895 0.00 0.00 0.00 3.46
2858 4814 1.206831 GCGACCGGCTGAAACTTTC 59.793 57.895 0.00 0.00 39.11 2.62
2859 4815 1.525077 TGCGACCGGCTGAAACTTT 60.525 52.632 0.00 0.00 44.05 2.66
2860 4816 2.110213 TGCGACCGGCTGAAACTT 59.890 55.556 0.00 0.00 44.05 2.66
2861 4817 2.665185 GTGCGACCGGCTGAAACT 60.665 61.111 0.00 0.00 44.05 2.66
2862 4818 3.723348 GGTGCGACCGGCTGAAAC 61.723 66.667 0.00 0.00 44.05 2.78
2876 4832 3.853330 CATCGGACGCTTGCGGTG 61.853 66.667 19.19 2.43 41.61 4.94
2881 4837 3.197790 CAGCCCATCGGACGCTTG 61.198 66.667 0.00 0.00 0.00 4.01
2882 4838 4.473520 CCAGCCCATCGGACGCTT 62.474 66.667 0.00 0.00 0.00 4.68
2885 4841 4.473520 AAGCCAGCCCATCGGACG 62.474 66.667 0.00 0.00 0.00 4.79
2886 4842 2.514824 GAAGCCAGCCCATCGGAC 60.515 66.667 0.00 0.00 0.00 4.79
2887 4843 3.797353 GGAAGCCAGCCCATCGGA 61.797 66.667 0.00 0.00 0.00 4.55
2888 4844 4.113815 TGGAAGCCAGCCCATCGG 62.114 66.667 0.00 0.00 0.00 4.18
2889 4845 2.515523 CTGGAAGCCAGCCCATCG 60.516 66.667 0.00 0.00 45.13 3.84
2900 4856 0.389817 TCGATGTGAACGGCTGGAAG 60.390 55.000 0.00 0.00 0.00 3.46
2901 4857 0.034198 TTCGATGTGAACGGCTGGAA 59.966 50.000 0.00 0.00 0.00 3.53
2902 4858 0.249120 ATTCGATGTGAACGGCTGGA 59.751 50.000 0.00 0.00 40.00 3.86
2903 4859 0.652592 GATTCGATGTGAACGGCTGG 59.347 55.000 0.00 0.00 40.00 4.85
2904 4860 1.645034 AGATTCGATGTGAACGGCTG 58.355 50.000 0.00 0.00 40.00 4.85
2905 4861 2.093973 AGAAGATTCGATGTGAACGGCT 60.094 45.455 0.00 0.00 40.00 5.52
2906 4862 2.029728 CAGAAGATTCGATGTGAACGGC 59.970 50.000 0.00 0.00 40.00 5.68
2907 4863 3.254060 ACAGAAGATTCGATGTGAACGG 58.746 45.455 0.00 0.00 40.00 4.44
2908 4864 4.385748 TGAACAGAAGATTCGATGTGAACG 59.614 41.667 0.00 0.00 40.00 3.95
2909 4865 5.845985 TGAACAGAAGATTCGATGTGAAC 57.154 39.130 0.00 0.00 40.00 3.18
2910 4866 5.582269 GGATGAACAGAAGATTCGATGTGAA 59.418 40.000 0.00 0.00 41.81 3.18
2911 4867 5.111989 GGATGAACAGAAGATTCGATGTGA 58.888 41.667 0.00 0.00 0.00 3.58
2912 4868 4.272018 GGGATGAACAGAAGATTCGATGTG 59.728 45.833 0.00 0.00 0.00 3.21
2913 4869 4.446371 GGGATGAACAGAAGATTCGATGT 58.554 43.478 0.00 0.00 0.00 3.06
2914 4870 3.812053 GGGGATGAACAGAAGATTCGATG 59.188 47.826 0.00 0.00 0.00 3.84
2915 4871 3.713764 AGGGGATGAACAGAAGATTCGAT 59.286 43.478 0.00 0.00 0.00 3.59
2916 4872 3.107601 AGGGGATGAACAGAAGATTCGA 58.892 45.455 0.00 0.00 0.00 3.71
2917 4873 3.550437 AGGGGATGAACAGAAGATTCG 57.450 47.619 0.00 0.00 0.00 3.34
2918 4874 4.080072 AGGAAGGGGATGAACAGAAGATTC 60.080 45.833 0.00 0.00 0.00 2.52
2919 4875 3.854994 AGGAAGGGGATGAACAGAAGATT 59.145 43.478 0.00 0.00 0.00 2.40
2920 4876 3.457749 GAGGAAGGGGATGAACAGAAGAT 59.542 47.826 0.00 0.00 0.00 2.40
2921 4877 2.840651 GAGGAAGGGGATGAACAGAAGA 59.159 50.000 0.00 0.00 0.00 2.87
2922 4878 2.843113 AGAGGAAGGGGATGAACAGAAG 59.157 50.000 0.00 0.00 0.00 2.85
2923 4879 2.921221 AGAGGAAGGGGATGAACAGAA 58.079 47.619 0.00 0.00 0.00 3.02
2924 4880 2.649742 AGAGGAAGGGGATGAACAGA 57.350 50.000 0.00 0.00 0.00 3.41
2925 4881 3.107601 TGTAGAGGAAGGGGATGAACAG 58.892 50.000 0.00 0.00 0.00 3.16
2926 4882 3.199442 TGTAGAGGAAGGGGATGAACA 57.801 47.619 0.00 0.00 0.00 3.18
2927 4883 3.243907 CGATGTAGAGGAAGGGGATGAAC 60.244 52.174 0.00 0.00 0.00 3.18
2928 4884 2.965831 CGATGTAGAGGAAGGGGATGAA 59.034 50.000 0.00 0.00 0.00 2.57
2929 4885 2.091278 ACGATGTAGAGGAAGGGGATGA 60.091 50.000 0.00 0.00 0.00 2.92
2930 4886 2.320781 ACGATGTAGAGGAAGGGGATG 58.679 52.381 0.00 0.00 0.00 3.51
2931 4887 2.777459 ACGATGTAGAGGAAGGGGAT 57.223 50.000 0.00 0.00 0.00 3.85
3249 5205 1.221293 CAGGAGCTGCAAGAGAGGG 59.779 63.158 8.35 0.00 34.07 4.30
3250 5206 1.221293 CCAGGAGCTGCAAGAGAGG 59.779 63.158 8.35 0.00 34.07 3.69
3251 5207 1.449956 GCCAGGAGCTGCAAGAGAG 60.450 63.158 8.35 0.00 38.99 3.20
3252 5208 2.667418 GCCAGGAGCTGCAAGAGA 59.333 61.111 8.35 0.00 38.99 3.10
3253 5209 2.438075 GGCCAGGAGCTGCAAGAG 60.438 66.667 8.35 0.00 43.05 2.85
3254 5210 2.609534 ATGGCCAGGAGCTGCAAGA 61.610 57.895 13.05 0.00 43.05 3.02
3255 5211 2.044252 ATGGCCAGGAGCTGCAAG 60.044 61.111 13.05 0.00 43.05 4.01
3256 5212 2.361992 CATGGCCAGGAGCTGCAA 60.362 61.111 13.35 0.00 43.05 4.08
3257 5213 4.435970 CCATGGCCAGGAGCTGCA 62.436 66.667 21.32 0.00 43.05 4.41
3258 5214 4.119363 TCCATGGCCAGGAGCTGC 62.119 66.667 21.32 0.00 43.05 5.25
3259 5215 2.124403 GTCCATGGCCAGGAGCTG 60.124 66.667 21.32 7.77 43.05 4.24
3262 5218 4.181010 CGGGTCCATGGCCAGGAG 62.181 72.222 21.32 9.37 35.42 3.69
3264 5220 4.489771 GACGGGTCCATGGCCAGG 62.490 72.222 22.28 12.17 0.00 4.45
3265 5221 3.402681 AGACGGGTCCATGGCCAG 61.403 66.667 21.92 20.31 0.00 4.85
3266 5222 3.716195 CAGACGGGTCCATGGCCA 61.716 66.667 21.92 8.56 0.00 5.36
3267 5223 4.489771 CCAGACGGGTCCATGGCC 62.490 72.222 6.96 11.82 0.00 5.36
3293 5249 4.476752 TACAATCACGGGCGGGGC 62.477 66.667 0.00 0.00 0.00 5.80
3294 5250 2.203015 CTACAATCACGGGCGGGG 60.203 66.667 0.00 0.00 0.00 5.73
3295 5251 2.895372 GCTACAATCACGGGCGGG 60.895 66.667 0.00 0.00 0.00 6.13
3296 5252 1.883084 GAGCTACAATCACGGGCGG 60.883 63.158 0.00 0.00 0.00 6.13
3297 5253 1.153647 TGAGCTACAATCACGGGCG 60.154 57.895 0.00 0.00 0.00 6.13
3298 5254 1.090052 GGTGAGCTACAATCACGGGC 61.090 60.000 0.00 0.00 46.49 6.13
3299 5255 0.249120 TGGTGAGCTACAATCACGGG 59.751 55.000 0.00 0.00 46.49 5.28
3300 5256 1.359848 GTGGTGAGCTACAATCACGG 58.640 55.000 0.00 0.00 46.49 4.94
3301 5257 1.359848 GGTGGTGAGCTACAATCACG 58.640 55.000 0.00 0.00 46.49 4.35
3302 5258 1.679032 GGGGTGGTGAGCTACAATCAC 60.679 57.143 0.00 0.00 45.12 3.06
3303 5259 0.618458 GGGGTGGTGAGCTACAATCA 59.382 55.000 0.00 0.00 0.00 2.57
3304 5260 0.618458 TGGGGTGGTGAGCTACAATC 59.382 55.000 0.00 0.00 0.00 2.67
3305 5261 1.064463 CATGGGGTGGTGAGCTACAAT 60.064 52.381 0.00 0.00 0.00 2.71
3306 5262 0.327924 CATGGGGTGGTGAGCTACAA 59.672 55.000 0.00 0.00 0.00 2.41
3307 5263 1.561769 CCATGGGGTGGTGAGCTACA 61.562 60.000 2.85 0.00 43.44 2.74
3308 5264 1.224592 CCATGGGGTGGTGAGCTAC 59.775 63.158 2.85 0.00 43.44 3.58
3309 5265 3.739922 CCATGGGGTGGTGAGCTA 58.260 61.111 2.85 0.00 43.44 3.32
3319 5275 3.384532 GGTGCTGCAACCATGGGG 61.385 66.667 18.09 9.11 40.22 4.96
3320 5276 3.751246 CGGTGCTGCAACCATGGG 61.751 66.667 18.09 0.00 40.53 4.00
3321 5277 3.751246 CCGGTGCTGCAACCATGG 61.751 66.667 12.81 11.19 40.53 3.66
3322 5278 3.751246 CCCGGTGCTGCAACCATG 61.751 66.667 12.81 0.66 40.53 3.66
3325 5281 3.853698 TAACCCCGGTGCTGCAACC 62.854 63.158 12.81 11.21 36.82 3.77
3326 5282 2.281900 TAACCCCGGTGCTGCAAC 60.282 61.111 7.83 7.83 0.00 4.17
3327 5283 2.281900 GTAACCCCGGTGCTGCAA 60.282 61.111 2.77 0.00 0.00 4.08
3328 5284 4.690719 CGTAACCCCGGTGCTGCA 62.691 66.667 0.00 0.00 0.00 4.41
3329 5285 4.692475 ACGTAACCCCGGTGCTGC 62.692 66.667 0.00 0.00 0.00 5.25
3330 5286 2.031465 AACGTAACCCCGGTGCTG 59.969 61.111 0.00 0.00 0.00 4.41
3331 5287 2.031465 CAACGTAACCCCGGTGCT 59.969 61.111 0.00 0.00 38.88 4.40
3334 5290 4.334118 GGGCAACGTAACCCCGGT 62.334 66.667 13.70 0.00 40.56 5.28
3340 5296 2.748647 ATGGCGGGGCAACGTAAC 60.749 61.111 0.00 0.00 35.98 2.50
3341 5297 2.748251 CATGGCGGGGCAACGTAA 60.748 61.111 0.00 0.00 35.98 3.18
3342 5298 3.673956 CTCATGGCGGGGCAACGTA 62.674 63.158 0.00 0.00 35.98 3.57
3346 5302 3.961225 AATGCTCATGGCGGGGCAA 62.961 57.895 7.63 0.00 45.43 4.52
3347 5303 4.445710 AATGCTCATGGCGGGGCA 62.446 61.111 5.97 5.97 45.43 5.36
3348 5304 3.599704 GAATGCTCATGGCGGGGC 61.600 66.667 0.00 0.00 45.43 5.80
3349 5305 3.282157 CGAATGCTCATGGCGGGG 61.282 66.667 0.00 0.00 45.43 5.73
3350 5306 2.203056 TCGAATGCTCATGGCGGG 60.203 61.111 0.00 0.00 45.43 6.13
3351 5307 2.874694 CGTCGAATGCTCATGGCGG 61.875 63.158 0.00 0.00 45.43 6.13
3352 5308 2.622629 CGTCGAATGCTCATGGCG 59.377 61.111 0.00 0.00 45.43 5.69
3353 5309 2.325857 GCGTCGAATGCTCATGGC 59.674 61.111 0.00 0.00 42.22 4.40
3354 5310 1.349627 GTGCGTCGAATGCTCATGG 59.650 57.895 11.65 0.00 0.00 3.66
3355 5311 0.025898 CTGTGCGTCGAATGCTCATG 59.974 55.000 13.81 6.92 33.78 3.07
3356 5312 1.086067 CCTGTGCGTCGAATGCTCAT 61.086 55.000 13.81 0.00 33.78 2.90
3357 5313 1.737735 CCTGTGCGTCGAATGCTCA 60.738 57.895 11.65 12.41 33.28 4.26
3358 5314 2.456119 CCCTGTGCGTCGAATGCTC 61.456 63.158 11.65 8.80 0.00 4.26
3359 5315 2.434884 CCCTGTGCGTCGAATGCT 60.435 61.111 11.65 0.00 0.00 3.79
3360 5316 3.499737 CCCCTGTGCGTCGAATGC 61.500 66.667 0.00 4.04 0.00 3.56
3361 5317 3.499737 GCCCCTGTGCGTCGAATG 61.500 66.667 0.00 0.00 0.00 2.67
3362 5318 3.329542 ATGCCCCTGTGCGTCGAAT 62.330 57.895 0.00 0.00 0.00 3.34
3363 5319 3.950794 GATGCCCCTGTGCGTCGAA 62.951 63.158 0.00 0.00 37.51 3.71
3364 5320 4.451150 GATGCCCCTGTGCGTCGA 62.451 66.667 0.00 0.00 37.51 4.20
3366 5322 4.760047 ACGATGCCCCTGTGCGTC 62.760 66.667 0.00 0.00 42.57 5.19
3367 5323 4.760047 GACGATGCCCCTGTGCGT 62.760 66.667 0.00 0.00 37.97 5.24
3369 5325 4.408821 TGGACGATGCCCCTGTGC 62.409 66.667 0.00 0.00 0.00 4.57
3370 5326 2.436646 GTGGACGATGCCCCTGTG 60.437 66.667 0.00 0.00 0.00 3.66
3371 5327 2.607750 AGTGGACGATGCCCCTGT 60.608 61.111 0.00 0.00 0.00 4.00
3372 5328 2.124983 CAGTGGACGATGCCCCTG 60.125 66.667 0.00 0.00 0.00 4.45
3373 5329 4.101448 GCAGTGGACGATGCCCCT 62.101 66.667 0.00 0.00 36.41 4.79
3382 5338 2.126424 GACGAGACGGCAGTGGAC 60.126 66.667 0.00 0.00 33.63 4.02
3383 5339 3.733960 CGACGAGACGGCAGTGGA 61.734 66.667 0.00 0.00 32.52 4.02
3385 5341 4.406173 AGCGACGAGACGGCAGTG 62.406 66.667 0.00 0.00 32.52 3.66
3386 5342 4.406173 CAGCGACGAGACGGCAGT 62.406 66.667 0.00 0.00 32.52 4.40
3387 5343 4.406173 ACAGCGACGAGACGGCAG 62.406 66.667 0.00 0.00 32.52 4.85
3388 5344 4.400109 GACAGCGACGAGACGGCA 62.400 66.667 0.00 0.00 32.52 5.69
3389 5345 3.685214 ATGACAGCGACGAGACGGC 62.685 63.158 0.00 0.00 0.00 5.68
3390 5346 1.583967 GATGACAGCGACGAGACGG 60.584 63.158 0.00 0.00 0.00 4.79
3391 5347 1.930188 CGATGACAGCGACGAGACG 60.930 63.158 7.46 0.00 0.00 4.18
3392 5348 2.218239 GCGATGACAGCGACGAGAC 61.218 63.158 18.71 0.00 0.00 3.36
3393 5349 2.100410 GCGATGACAGCGACGAGA 59.900 61.111 18.71 0.00 0.00 4.04
3394 5350 2.943680 ATGGCGATGACAGCGACGAG 62.944 60.000 18.71 0.00 40.33 4.18
3395 5351 2.936829 GATGGCGATGACAGCGACGA 62.937 60.000 18.71 5.36 40.33 4.20
3396 5352 2.580470 GATGGCGATGACAGCGACG 61.580 63.158 18.71 3.64 40.33 5.12
3397 5353 1.083806 TTGATGGCGATGACAGCGAC 61.084 55.000 18.71 15.97 37.28 5.19
3398 5354 1.083806 GTTGATGGCGATGACAGCGA 61.084 55.000 18.71 0.00 35.00 4.93
3399 5355 1.349627 GTTGATGGCGATGACAGCG 59.650 57.895 9.11 9.11 35.00 5.18
3400 5356 0.097674 GTGTTGATGGCGATGACAGC 59.902 55.000 0.00 0.00 0.00 4.40
3401 5357 1.662629 GAGTGTTGATGGCGATGACAG 59.337 52.381 0.00 0.00 0.00 3.51
3402 5358 1.725641 GAGTGTTGATGGCGATGACA 58.274 50.000 0.00 0.00 0.00 3.58
3403 5359 0.647410 CGAGTGTTGATGGCGATGAC 59.353 55.000 0.00 0.00 0.00 3.06
3404 5360 1.083806 GCGAGTGTTGATGGCGATGA 61.084 55.000 0.00 0.00 0.00 2.92
3405 5361 1.349627 GCGAGTGTTGATGGCGATG 59.650 57.895 0.00 0.00 0.00 3.84
3406 5362 1.815421 GGCGAGTGTTGATGGCGAT 60.815 57.895 0.00 0.00 0.00 4.58
3407 5363 2.434185 GGCGAGTGTTGATGGCGA 60.434 61.111 0.00 0.00 0.00 5.54
3408 5364 3.499737 GGGCGAGTGTTGATGGCG 61.500 66.667 0.00 0.00 0.00 5.69
3409 5365 3.134127 GGGGCGAGTGTTGATGGC 61.134 66.667 0.00 0.00 0.00 4.40
3410 5366 2.438434 GGGGGCGAGTGTTGATGG 60.438 66.667 0.00 0.00 0.00 3.51


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.