Multiple sequence alignment - TraesCS4B01G071800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G071800 chr4B 100.000 5410 0 0 1 5410 66464097 66469506 0.000000e+00 9991.0
1 TraesCS4B01G071800 chr4B 74.747 495 113 11 2816 3304 66173721 66173233 1.530000e-50 211.0
2 TraesCS4B01G071800 chr4D 93.457 4142 167 50 314 4409 45721945 45717862 0.000000e+00 6052.0
3 TraesCS4B01G071800 chr4D 94.915 649 22 7 4487 5132 45714846 45714206 0.000000e+00 1005.0
4 TraesCS4B01G071800 chr4D 94.308 650 26 9 4487 5132 45717862 45717220 0.000000e+00 985.0
5 TraesCS4B01G071800 chr4D 93.814 388 17 3 4029 4409 45715233 45714846 1.310000e-160 577.0
6 TraesCS4B01G071800 chr4D 93.987 316 16 3 1 314 48676814 48677128 4.900000e-130 475.0
7 TraesCS4B01G071800 chr4D 90.955 199 17 1 5213 5410 45717222 45717024 3.210000e-67 267.0
8 TraesCS4B01G071800 chr4D 75.506 494 111 9 2816 3304 45700813 45700325 3.260000e-57 233.0
9 TraesCS4B01G071800 chr4A 92.097 3682 174 59 794 4404 553310327 553313962 0.000000e+00 5079.0
10 TraesCS4B01G071800 chr4A 86.188 362 35 9 440 795 553309927 553310279 1.420000e-100 377.0
11 TraesCS4B01G071800 chr4A 88.148 135 16 0 314 448 553169901 553170035 1.560000e-35 161.0
12 TraesCS4B01G071800 chr4A 91.837 98 7 1 4584 4681 553314101 553314197 9.450000e-28 135.0
13 TraesCS4B01G071800 chr4A 90.000 100 10 0 5124 5223 435016526 435016427 4.400000e-26 130.0
14 TraesCS4B01G071800 chr2B 94.268 314 17 1 1 313 435695069 435694756 3.790000e-131 479.0
15 TraesCS4B01G071800 chr2B 92.675 314 22 1 1 313 91945142 91944829 8.260000e-123 451.0
16 TraesCS4B01G071800 chr2B 89.899 99 7 2 4396 4491 103270292 103270390 2.050000e-24 124.0
17 TraesCS4B01G071800 chr2B 86.364 110 12 3 5124 5233 494265176 494265070 3.420000e-22 117.0
18 TraesCS4B01G071800 chr3B 93.016 315 21 1 1 314 393345971 393346285 4.940000e-125 459.0
19 TraesCS4B01G071800 chr3B 92.473 93 4 2 4400 4489 293282141 293282049 4.400000e-26 130.0
20 TraesCS4B01G071800 chr6B 92.994 314 21 1 1 313 206439710 206440023 1.780000e-124 457.0
21 TraesCS4B01G071800 chr3D 92.994 314 21 1 1 313 427183892 427184205 1.780000e-124 457.0
22 TraesCS4B01G071800 chr3D 88.679 106 10 2 5111 5215 22679040 22679144 1.580000e-25 128.0
23 TraesCS4B01G071800 chr3D 89.320 103 9 2 5114 5215 22767915 22767814 1.580000e-25 128.0
24 TraesCS4B01G071800 chr3D 88.406 69 6 2 4776 4842 503845236 503845168 1.250000e-11 82.4
25 TraesCS4B01G071800 chr3D 94.000 50 3 0 4588 4637 593670797 593670748 5.810000e-10 76.8
26 TraesCS4B01G071800 chr1B 93.016 315 19 3 1 314 383179639 383179327 1.780000e-124 457.0
27 TraesCS4B01G071800 chr1A 93.248 311 18 3 1 309 452855081 452855390 6.390000e-124 455.0
28 TraesCS4B01G071800 chr1A 87.273 110 9 4 5130 5235 518662760 518662868 2.650000e-23 121.0
29 TraesCS4B01G071800 chr1A 77.273 198 36 9 4665 4860 541148291 541148481 2.060000e-19 108.0
30 TraesCS4B01G071800 chr1A 82.653 98 13 3 4757 4850 65627231 65627134 3.470000e-12 84.2
31 TraesCS4B01G071800 chr5D 92.675 314 22 1 1 313 308401907 308401594 8.260000e-123 451.0
32 TraesCS4B01G071800 chr5D 91.304 92 7 1 5128 5219 446918168 446918258 2.050000e-24 124.0
33 TraesCS4B01G071800 chr7A 93.750 96 3 2 4400 4492 129876932 129877027 2.030000e-29 141.0
34 TraesCS4B01G071800 chr7D 93.478 92 4 1 4402 4491 98275862 98275771 9.450000e-28 135.0
35 TraesCS4B01G071800 chr7D 94.186 86 4 1 4406 4490 181912001 181911916 4.400000e-26 130.0
36 TraesCS4B01G071800 chrUn 93.333 90 4 1 4403 4490 135090715 135090804 1.220000e-26 132.0
37 TraesCS4B01G071800 chrUn 93.333 90 4 1 4403 4490 152687571 152687660 1.220000e-26 132.0
38 TraesCS4B01G071800 chr7B 92.553 94 3 2 4396 4487 312542187 312542096 1.220000e-26 132.0
39 TraesCS4B01G071800 chr7B 90.526 95 8 1 5131 5225 639796199 639796292 2.050000e-24 124.0
40 TraesCS4B01G071800 chr2D 90.291 103 6 3 4398 4496 651527887 651527785 1.220000e-26 132.0
41 TraesCS4B01G071800 chr3A 90.625 96 9 0 5129 5224 22230721 22230626 1.580000e-25 128.0
42 TraesCS4B01G071800 chr3A 89.216 102 8 3 5124 5223 57262244 57262144 2.050000e-24 124.0
43 TraesCS4B01G071800 chr3A 97.959 49 1 0 4588 4636 724662063 724662015 9.650000e-13 86.1
44 TraesCS4B01G071800 chr2A 96.226 53 2 0 4583 4635 771519506 771519454 2.680000e-13 87.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G071800 chr4B 66464097 66469506 5409 False 9991.000000 9991 100.000000 1 5410 1 chr4B.!!$F1 5409
1 TraesCS4B01G071800 chr4D 45714206 45721945 7739 True 1777.200000 6052 93.489800 314 5410 5 chr4D.!!$R2 5096
2 TraesCS4B01G071800 chr4A 553309927 553314197 4270 False 1863.666667 5079 90.040667 440 4681 3 chr4A.!!$F2 4241

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
582 585 0.179018 GCACATGGTATCTCCCCCAC 60.179 60.0 0.00 0.0 32.49 4.61 F
1052 1139 0.179012 TTTCCGGAAAAACCCTCGCT 60.179 50.0 27.12 0.0 34.64 4.93 F
1799 1895 0.610232 ACATGCACAGCTTCCCTTCC 60.610 55.0 0.00 0.0 0.00 3.46 F
2748 2857 0.109689 AACACGTCTACGCAGCTCTC 60.110 55.0 1.74 0.0 44.43 3.20 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1784 1879 0.250901 TTCAGGAAGGGAAGCTGTGC 60.251 55.0 0.00 0.0 0.00 4.57 R
1872 1968 0.673985 CCATGCTTGATGCCCTCATG 59.326 55.0 0.22 0.0 42.00 3.07 R
3541 3657 0.306840 CACATAGCCAGCTGCATTCG 59.693 55.0 8.66 0.0 44.83 3.34 R
4468 4618 0.042131 TACTCCCTCCGTCCCACAAT 59.958 55.0 0.00 0.0 0.00 2.71 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
30 31 9.965902 ACATAGTCTTGATCAACCTTAAATCTT 57.034 29.630 3.38 0.00 0.00 2.40
33 34 8.341892 AGTCTTGATCAACCTTAAATCTTTCC 57.658 34.615 3.38 0.00 0.00 3.13
34 35 7.944554 AGTCTTGATCAACCTTAAATCTTTCCA 59.055 33.333 3.38 0.00 0.00 3.53
35 36 8.576442 GTCTTGATCAACCTTAAATCTTTCCAA 58.424 33.333 3.38 0.00 0.00 3.53
36 37 8.576442 TCTTGATCAACCTTAAATCTTTCCAAC 58.424 33.333 3.38 0.00 0.00 3.77
37 38 8.477419 TTGATCAACCTTAAATCTTTCCAACT 57.523 30.769 3.38 0.00 0.00 3.16
38 39 8.477419 TGATCAACCTTAAATCTTTCCAACTT 57.523 30.769 0.00 0.00 0.00 2.66
39 40 8.923270 TGATCAACCTTAAATCTTTCCAACTTT 58.077 29.630 0.00 0.00 0.00 2.66
40 41 9.411801 GATCAACCTTAAATCTTTCCAACTTTC 57.588 33.333 0.00 0.00 0.00 2.62
41 42 8.533569 TCAACCTTAAATCTTTCCAACTTTCT 57.466 30.769 0.00 0.00 0.00 2.52
42 43 8.977412 TCAACCTTAAATCTTTCCAACTTTCTT 58.023 29.630 0.00 0.00 0.00 2.52
43 44 9.249457 CAACCTTAAATCTTTCCAACTTTCTTC 57.751 33.333 0.00 0.00 0.00 2.87
44 45 8.533569 ACCTTAAATCTTTCCAACTTTCTTCA 57.466 30.769 0.00 0.00 0.00 3.02
45 46 9.147732 ACCTTAAATCTTTCCAACTTTCTTCAT 57.852 29.630 0.00 0.00 0.00 2.57
46 47 9.987272 CCTTAAATCTTTCCAACTTTCTTCATT 57.013 29.630 0.00 0.00 0.00 2.57
53 54 9.573166 TCTTTCCAACTTTCTTCATTAAGATGA 57.427 29.630 0.00 0.00 41.36 2.92
56 57 8.868522 TCCAACTTTCTTCATTAAGATGATGT 57.131 30.769 0.00 0.00 41.71 3.06
57 58 8.950210 TCCAACTTTCTTCATTAAGATGATGTC 58.050 33.333 0.00 0.00 41.71 3.06
58 59 8.954350 CCAACTTTCTTCATTAAGATGATGTCT 58.046 33.333 0.00 0.00 41.71 3.41
61 62 9.730705 ACTTTCTTCATTAAGATGATGTCTTGA 57.269 29.630 0.79 0.00 46.50 3.02
64 65 8.728337 TCTTCATTAAGATGATGTCTTGAAGG 57.272 34.615 13.66 3.52 46.50 3.46
65 66 8.324306 TCTTCATTAAGATGATGTCTTGAAGGT 58.676 33.333 13.66 0.00 46.50 3.50
66 67 9.605275 CTTCATTAAGATGATGTCTTGAAGGTA 57.395 33.333 8.86 0.00 46.50 3.08
67 68 9.958180 TTCATTAAGATGATGTCTTGAAGGTAA 57.042 29.630 0.79 0.00 46.50 2.85
68 69 9.958180 TCATTAAGATGATGTCTTGAAGGTAAA 57.042 29.630 0.79 0.00 46.50 2.01
69 70 9.994432 CATTAAGATGATGTCTTGAAGGTAAAC 57.006 33.333 0.79 0.00 46.50 2.01
70 71 9.739276 ATTAAGATGATGTCTTGAAGGTAAACA 57.261 29.630 0.79 0.00 46.50 2.83
71 72 9.739276 TTAAGATGATGTCTTGAAGGTAAACAT 57.261 29.630 0.00 0.00 46.50 2.71
72 73 7.621428 AGATGATGTCTTGAAGGTAAACATG 57.379 36.000 2.47 0.00 31.47 3.21
73 74 7.397221 AGATGATGTCTTGAAGGTAAACATGA 58.603 34.615 0.00 0.00 31.47 3.07
74 75 7.884877 AGATGATGTCTTGAAGGTAAACATGAA 59.115 33.333 0.00 0.00 31.47 2.57
75 76 8.585471 ATGATGTCTTGAAGGTAAACATGAAT 57.415 30.769 0.00 0.00 31.04 2.57
76 77 7.819644 TGATGTCTTGAAGGTAAACATGAATG 58.180 34.615 0.00 0.00 31.04 2.67
77 78 7.448161 TGATGTCTTGAAGGTAAACATGAATGT 59.552 33.333 0.00 0.00 44.20 2.71
94 95 9.017509 ACATGAATGTTCACACAATCTTATTCT 57.982 29.630 0.00 0.00 40.49 2.40
95 96 9.850628 CATGAATGTTCACACAATCTTATTCTT 57.149 29.630 0.00 0.00 40.49 2.52
97 98 9.065798 TGAATGTTCACACAATCTTATTCTTCA 57.934 29.630 0.00 0.00 36.16 3.02
98 99 9.897744 GAATGTTCACACAATCTTATTCTTCAA 57.102 29.630 0.00 0.00 36.16 2.69
99 100 9.903682 AATGTTCACACAATCTTATTCTTCAAG 57.096 29.630 0.00 0.00 36.16 3.02
100 101 8.675705 TGTTCACACAATCTTATTCTTCAAGA 57.324 30.769 0.00 0.00 36.50 3.02
101 102 8.559536 TGTTCACACAATCTTATTCTTCAAGAC 58.440 33.333 0.00 0.00 34.96 3.01
102 103 8.778358 GTTCACACAATCTTATTCTTCAAGACT 58.222 33.333 0.00 0.00 34.96 3.24
103 104 8.908786 TCACACAATCTTATTCTTCAAGACTT 57.091 30.769 0.00 0.00 34.96 3.01
104 105 8.777413 TCACACAATCTTATTCTTCAAGACTTG 58.223 33.333 9.03 9.03 34.96 3.16
105 106 8.562892 CACACAATCTTATTCTTCAAGACTTGT 58.437 33.333 14.75 0.00 35.96 3.16
106 107 9.125026 ACACAATCTTATTCTTCAAGACTTGTT 57.875 29.630 14.75 0.00 34.82 2.83
107 108 9.956720 CACAATCTTATTCTTCAAGACTTGTTT 57.043 29.630 14.75 0.40 34.82 2.83
108 109 9.956720 ACAATCTTATTCTTCAAGACTTGTTTG 57.043 29.630 14.75 6.76 34.16 2.93
109 110 8.909671 CAATCTTATTCTTCAAGACTTGTTTGC 58.090 33.333 14.75 0.00 34.96 3.68
110 111 7.566760 TCTTATTCTTCAAGACTTGTTTGCA 57.433 32.000 14.75 0.00 0.00 4.08
111 112 7.995289 TCTTATTCTTCAAGACTTGTTTGCAA 58.005 30.769 14.75 0.00 0.00 4.08
112 113 8.632679 TCTTATTCTTCAAGACTTGTTTGCAAT 58.367 29.630 14.75 9.46 33.65 3.56
113 114 9.897744 CTTATTCTTCAAGACTTGTTTGCAATA 57.102 29.630 14.75 8.66 33.65 1.90
115 116 8.807667 ATTCTTCAAGACTTGTTTGCAATAAG 57.192 30.769 14.75 17.57 35.92 1.73
116 117 6.208644 TCTTCAAGACTTGTTTGCAATAAGC 58.791 36.000 18.57 13.26 45.96 3.09
117 118 5.772825 TCAAGACTTGTTTGCAATAAGCT 57.227 34.783 18.57 14.68 45.94 3.74
118 119 5.762045 TCAAGACTTGTTTGCAATAAGCTC 58.238 37.500 18.57 15.36 45.94 4.09
119 120 5.299028 TCAAGACTTGTTTGCAATAAGCTCA 59.701 36.000 18.57 8.56 45.94 4.26
120 121 5.772825 AGACTTGTTTGCAATAAGCTCAA 57.227 34.783 18.57 9.36 45.94 3.02
121 122 5.523369 AGACTTGTTTGCAATAAGCTCAAC 58.477 37.500 18.57 5.51 45.94 3.18
122 123 5.300286 AGACTTGTTTGCAATAAGCTCAACT 59.700 36.000 18.57 10.59 45.94 3.16
123 124 5.523369 ACTTGTTTGCAATAAGCTCAACTC 58.477 37.500 18.57 0.00 45.94 3.01
124 125 5.067674 ACTTGTTTGCAATAAGCTCAACTCA 59.932 36.000 18.57 0.00 45.94 3.41
125 126 4.858935 TGTTTGCAATAAGCTCAACTCAC 58.141 39.130 0.00 0.00 45.94 3.51
126 127 4.337836 TGTTTGCAATAAGCTCAACTCACA 59.662 37.500 0.00 0.00 45.94 3.58
127 128 4.488126 TTGCAATAAGCTCAACTCACAC 57.512 40.909 0.00 0.00 45.94 3.82
128 129 3.475575 TGCAATAAGCTCAACTCACACA 58.524 40.909 0.00 0.00 45.94 3.72
129 130 4.074259 TGCAATAAGCTCAACTCACACAT 58.926 39.130 0.00 0.00 45.94 3.21
130 131 4.083164 TGCAATAAGCTCAACTCACACATG 60.083 41.667 0.00 0.00 45.94 3.21
131 132 4.154737 GCAATAAGCTCAACTCACACATGA 59.845 41.667 0.00 0.00 41.15 3.07
132 133 5.625251 CAATAAGCTCAACTCACACATGAC 58.375 41.667 0.00 0.00 0.00 3.06
133 134 2.175878 AGCTCAACTCACACATGACC 57.824 50.000 0.00 0.00 0.00 4.02
134 135 1.417517 AGCTCAACTCACACATGACCA 59.582 47.619 0.00 0.00 0.00 4.02
135 136 2.158769 AGCTCAACTCACACATGACCAA 60.159 45.455 0.00 0.00 0.00 3.67
136 137 2.816087 GCTCAACTCACACATGACCAAT 59.184 45.455 0.00 0.00 0.00 3.16
137 138 3.120060 GCTCAACTCACACATGACCAATC 60.120 47.826 0.00 0.00 0.00 2.67
138 139 4.321718 CTCAACTCACACATGACCAATCT 58.678 43.478 0.00 0.00 0.00 2.40
139 140 4.717877 TCAACTCACACATGACCAATCTT 58.282 39.130 0.00 0.00 0.00 2.40
140 141 5.132502 TCAACTCACACATGACCAATCTTT 58.867 37.500 0.00 0.00 0.00 2.52
141 142 5.008911 TCAACTCACACATGACCAATCTTTG 59.991 40.000 0.00 0.00 0.00 2.77
161 162 8.725405 TCTTTGGATAAATCGTTAATAGCACA 57.275 30.769 0.00 0.00 0.00 4.57
162 163 9.337396 TCTTTGGATAAATCGTTAATAGCACAT 57.663 29.630 0.00 0.00 0.00 3.21
163 164 9.950680 CTTTGGATAAATCGTTAATAGCACATT 57.049 29.630 0.00 0.00 0.00 2.71
164 165 9.729023 TTTGGATAAATCGTTAATAGCACATTG 57.271 29.630 0.00 0.00 0.00 2.82
165 166 7.870826 TGGATAAATCGTTAATAGCACATTGG 58.129 34.615 0.00 0.00 0.00 3.16
166 167 7.500892 TGGATAAATCGTTAATAGCACATTGGT 59.499 33.333 0.00 0.00 0.00 3.67
167 168 8.015658 GGATAAATCGTTAATAGCACATTGGTC 58.984 37.037 0.00 0.00 0.00 4.02
168 169 6.751514 AAATCGTTAATAGCACATTGGTCA 57.248 33.333 0.00 0.00 0.00 4.02
169 170 6.751514 AATCGTTAATAGCACATTGGTCAA 57.248 33.333 0.00 0.00 0.00 3.18
170 171 5.539582 TCGTTAATAGCACATTGGTCAAC 57.460 39.130 0.00 0.00 0.00 3.18
171 172 4.998033 TCGTTAATAGCACATTGGTCAACA 59.002 37.500 0.00 0.00 0.00 3.33
172 173 5.086058 CGTTAATAGCACATTGGTCAACAC 58.914 41.667 0.00 0.00 0.00 3.32
173 174 5.334491 CGTTAATAGCACATTGGTCAACACA 60.334 40.000 0.00 0.00 0.00 3.72
174 175 6.620678 GTTAATAGCACATTGGTCAACACAT 58.379 36.000 0.00 0.00 0.00 3.21
175 176 7.413548 CGTTAATAGCACATTGGTCAACACATA 60.414 37.037 0.00 0.00 0.00 2.29
176 177 6.832520 AATAGCACATTGGTCAACACATAA 57.167 33.333 0.00 0.00 0.00 1.90
177 178 6.832520 ATAGCACATTGGTCAACACATAAA 57.167 33.333 0.00 0.00 0.00 1.40
178 179 4.870363 AGCACATTGGTCAACACATAAAC 58.130 39.130 0.00 0.00 0.00 2.01
179 180 3.987220 GCACATTGGTCAACACATAAACC 59.013 43.478 0.00 0.00 0.00 3.27
180 181 4.555262 CACATTGGTCAACACATAAACCC 58.445 43.478 0.00 0.00 0.00 4.11
181 182 3.576550 ACATTGGTCAACACATAAACCCC 59.423 43.478 0.00 0.00 0.00 4.95
182 183 3.603965 TTGGTCAACACATAAACCCCT 57.396 42.857 0.00 0.00 0.00 4.79
183 184 3.603965 TGGTCAACACATAAACCCCTT 57.396 42.857 0.00 0.00 0.00 3.95
184 185 3.226777 TGGTCAACACATAAACCCCTTG 58.773 45.455 0.00 0.00 0.00 3.61
185 186 3.117474 TGGTCAACACATAAACCCCTTGA 60.117 43.478 0.00 0.00 0.00 3.02
186 187 3.892588 GGTCAACACATAAACCCCTTGAA 59.107 43.478 0.00 0.00 0.00 2.69
187 188 4.342665 GGTCAACACATAAACCCCTTGAAA 59.657 41.667 0.00 0.00 0.00 2.69
188 189 5.286438 GTCAACACATAAACCCCTTGAAAC 58.714 41.667 0.00 0.00 0.00 2.78
189 190 4.342665 TCAACACATAAACCCCTTGAAACC 59.657 41.667 0.00 0.00 0.00 3.27
190 191 3.917300 ACACATAAACCCCTTGAAACCA 58.083 40.909 0.00 0.00 0.00 3.67
191 192 4.290942 ACACATAAACCCCTTGAAACCAA 58.709 39.130 0.00 0.00 0.00 3.67
192 193 4.100344 ACACATAAACCCCTTGAAACCAAC 59.900 41.667 0.00 0.00 0.00 3.77
193 194 4.100189 CACATAAACCCCTTGAAACCAACA 59.900 41.667 0.00 0.00 0.00 3.33
194 195 4.100344 ACATAAACCCCTTGAAACCAACAC 59.900 41.667 0.00 0.00 0.00 3.32
195 196 2.239681 AACCCCTTGAAACCAACACA 57.760 45.000 0.00 0.00 0.00 3.72
196 197 2.470057 ACCCCTTGAAACCAACACAT 57.530 45.000 0.00 0.00 0.00 3.21
197 198 2.038659 ACCCCTTGAAACCAACACATG 58.961 47.619 0.00 0.00 0.00 3.21
212 213 4.918810 ACACATGGACTTCAAGAAAACC 57.081 40.909 0.00 0.00 0.00 3.27
213 214 4.536765 ACACATGGACTTCAAGAAAACCT 58.463 39.130 0.00 0.00 0.00 3.50
214 215 5.690865 ACACATGGACTTCAAGAAAACCTA 58.309 37.500 0.00 0.00 0.00 3.08
215 216 6.306987 ACACATGGACTTCAAGAAAACCTAT 58.693 36.000 0.00 0.00 0.00 2.57
216 217 6.207417 ACACATGGACTTCAAGAAAACCTATG 59.793 38.462 0.00 0.00 0.00 2.23
217 218 5.711976 ACATGGACTTCAAGAAAACCTATGG 59.288 40.000 0.00 0.00 0.00 2.74
218 219 5.576563 TGGACTTCAAGAAAACCTATGGA 57.423 39.130 0.00 0.00 0.00 3.41
219 220 5.313712 TGGACTTCAAGAAAACCTATGGAC 58.686 41.667 0.00 0.00 0.00 4.02
220 221 5.163141 TGGACTTCAAGAAAACCTATGGACA 60.163 40.000 0.00 0.00 0.00 4.02
221 222 5.768164 GGACTTCAAGAAAACCTATGGACAA 59.232 40.000 0.00 0.00 0.00 3.18
222 223 6.264518 GGACTTCAAGAAAACCTATGGACAAA 59.735 38.462 0.00 0.00 0.00 2.83
223 224 7.039714 GGACTTCAAGAAAACCTATGGACAAAT 60.040 37.037 0.00 0.00 0.00 2.32
224 225 7.886338 ACTTCAAGAAAACCTATGGACAAATC 58.114 34.615 0.00 0.00 0.00 2.17
225 226 6.834168 TCAAGAAAACCTATGGACAAATCC 57.166 37.500 0.00 0.00 46.48 3.01
226 227 6.552008 TCAAGAAAACCTATGGACAAATCCT 58.448 36.000 0.00 0.00 46.43 3.24
227 228 7.010160 TCAAGAAAACCTATGGACAAATCCTT 58.990 34.615 0.00 0.00 46.43 3.36
228 229 7.176690 TCAAGAAAACCTATGGACAAATCCTTC 59.823 37.037 0.00 0.00 46.43 3.46
229 230 6.552008 AGAAAACCTATGGACAAATCCTTCA 58.448 36.000 0.00 0.00 46.43 3.02
230 231 7.010160 AGAAAACCTATGGACAAATCCTTCAA 58.990 34.615 0.00 0.00 46.43 2.69
231 232 7.508977 AGAAAACCTATGGACAAATCCTTCAAA 59.491 33.333 0.00 0.00 46.43 2.69
232 233 7.797121 AAACCTATGGACAAATCCTTCAAAT 57.203 32.000 0.00 0.00 46.43 2.32
233 234 8.893563 AAACCTATGGACAAATCCTTCAAATA 57.106 30.769 0.00 0.00 46.43 1.40
234 235 9.492730 AAACCTATGGACAAATCCTTCAAATAT 57.507 29.630 0.00 0.00 46.43 1.28
236 237 9.799106 ACCTATGGACAAATCCTTCAAATATAG 57.201 33.333 0.00 0.00 46.43 1.31
237 238 8.734386 CCTATGGACAAATCCTTCAAATATAGC 58.266 37.037 0.00 0.00 46.43 2.97
238 239 9.512588 CTATGGACAAATCCTTCAAATATAGCT 57.487 33.333 0.00 0.00 46.43 3.32
239 240 7.807977 TGGACAAATCCTTCAAATATAGCTC 57.192 36.000 0.00 0.00 46.43 4.09
240 241 7.345691 TGGACAAATCCTTCAAATATAGCTCA 58.654 34.615 0.00 0.00 46.43 4.26
241 242 7.833682 TGGACAAATCCTTCAAATATAGCTCAA 59.166 33.333 0.00 0.00 46.43 3.02
242 243 8.348507 GGACAAATCCTTCAAATATAGCTCAAG 58.651 37.037 0.00 0.00 42.45 3.02
243 244 8.230472 ACAAATCCTTCAAATATAGCTCAAGG 57.770 34.615 0.00 0.00 33.05 3.61
244 245 6.890979 AATCCTTCAAATATAGCTCAAGGC 57.109 37.500 0.00 0.00 42.19 4.35
245 246 5.372343 TCCTTCAAATATAGCTCAAGGCA 57.628 39.130 0.00 0.00 44.79 4.75
246 247 5.754782 TCCTTCAAATATAGCTCAAGGCAA 58.245 37.500 0.00 0.00 44.79 4.52
247 248 5.590259 TCCTTCAAATATAGCTCAAGGCAAC 59.410 40.000 0.00 0.00 44.79 4.17
248 249 5.221126 CCTTCAAATATAGCTCAAGGCAACC 60.221 44.000 0.00 0.00 44.79 3.77
249 250 4.854173 TCAAATATAGCTCAAGGCAACCA 58.146 39.130 0.00 0.00 44.79 3.67
250 251 5.448654 TCAAATATAGCTCAAGGCAACCAT 58.551 37.500 0.00 0.00 44.79 3.55
251 252 5.893255 TCAAATATAGCTCAAGGCAACCATT 59.107 36.000 0.00 0.00 44.79 3.16
252 253 7.059788 TCAAATATAGCTCAAGGCAACCATTA 58.940 34.615 0.00 0.00 44.79 1.90
253 254 7.229306 TCAAATATAGCTCAAGGCAACCATTAG 59.771 37.037 0.00 0.00 44.79 1.73
254 255 2.887151 AGCTCAAGGCAACCATTAGT 57.113 45.000 0.00 0.00 44.79 2.24
255 256 2.716217 AGCTCAAGGCAACCATTAGTC 58.284 47.619 0.00 0.00 44.79 2.59
256 257 1.745653 GCTCAAGGCAACCATTAGTCC 59.254 52.381 0.00 0.00 41.35 3.85
257 258 2.879756 GCTCAAGGCAACCATTAGTCCA 60.880 50.000 0.00 0.00 41.35 4.02
258 259 3.624777 CTCAAGGCAACCATTAGTCCAT 58.375 45.455 0.00 0.00 37.17 3.41
259 260 4.780815 CTCAAGGCAACCATTAGTCCATA 58.219 43.478 0.00 0.00 37.17 2.74
260 261 4.780815 TCAAGGCAACCATTAGTCCATAG 58.219 43.478 0.00 0.00 37.17 2.23
261 262 4.473196 TCAAGGCAACCATTAGTCCATAGA 59.527 41.667 0.00 0.00 37.17 1.98
262 263 5.045213 TCAAGGCAACCATTAGTCCATAGAA 60.045 40.000 0.00 0.00 37.17 2.10
263 264 5.450818 AGGCAACCATTAGTCCATAGAAA 57.549 39.130 0.00 0.00 37.17 2.52
264 265 5.826643 AGGCAACCATTAGTCCATAGAAAA 58.173 37.500 0.00 0.00 37.17 2.29
265 266 6.435164 AGGCAACCATTAGTCCATAGAAAAT 58.565 36.000 0.00 0.00 37.17 1.82
266 267 6.322201 AGGCAACCATTAGTCCATAGAAAATG 59.678 38.462 0.00 0.00 31.74 2.32
267 268 6.096846 GGCAACCATTAGTCCATAGAAAATGT 59.903 38.462 0.00 0.00 30.73 2.71
268 269 7.196331 GCAACCATTAGTCCATAGAAAATGTC 58.804 38.462 0.00 0.00 30.73 3.06
269 270 7.148086 GCAACCATTAGTCCATAGAAAATGTCA 60.148 37.037 0.00 0.00 30.73 3.58
270 271 8.906867 CAACCATTAGTCCATAGAAAATGTCAT 58.093 33.333 0.00 0.00 30.73 3.06
271 272 8.682936 ACCATTAGTCCATAGAAAATGTCATC 57.317 34.615 0.00 0.00 30.73 2.92
272 273 8.274322 ACCATTAGTCCATAGAAAATGTCATCA 58.726 33.333 0.00 0.00 30.73 3.07
273 274 9.123902 CCATTAGTCCATAGAAAATGTCATCAA 57.876 33.333 0.00 0.00 30.73 2.57
278 279 9.685276 AGTCCATAGAAAATGTCATCAATTACA 57.315 29.630 0.00 0.00 0.00 2.41
289 290 9.775854 AATGTCATCAATTACAAAATCCAAACA 57.224 25.926 0.00 0.00 0.00 2.83
290 291 9.947433 ATGTCATCAATTACAAAATCCAAACAT 57.053 25.926 0.00 0.00 0.00 2.71
291 292 9.205719 TGTCATCAATTACAAAATCCAAACATG 57.794 29.630 0.00 0.00 0.00 3.21
292 293 9.421806 GTCATCAATTACAAAATCCAAACATGA 57.578 29.630 0.00 0.00 0.00 3.07
293 294 9.642327 TCATCAATTACAAAATCCAAACATGAG 57.358 29.630 0.00 0.00 0.00 2.90
294 295 8.875803 CATCAATTACAAAATCCAAACATGAGG 58.124 33.333 0.00 0.00 0.00 3.86
295 296 7.385267 TCAATTACAAAATCCAAACATGAGGG 58.615 34.615 0.00 0.00 0.00 4.30
296 297 3.683365 ACAAAATCCAAACATGAGGGC 57.317 42.857 0.00 0.00 0.00 5.19
297 298 2.971330 ACAAAATCCAAACATGAGGGCA 59.029 40.909 0.00 0.00 0.00 5.36
298 299 3.244181 ACAAAATCCAAACATGAGGGCAC 60.244 43.478 0.00 0.00 0.00 5.01
311 312 3.987404 GGCACCACATGTCCTGTC 58.013 61.111 0.00 0.00 35.29 3.51
312 313 1.073025 GGCACCACATGTCCTGTCA 59.927 57.895 0.00 0.00 35.29 3.58
316 317 0.318441 ACCACATGTCCTGTCACTCG 59.682 55.000 0.00 0.00 35.29 4.18
322 323 3.118629 ACATGTCCTGTCACTCGCATTAT 60.119 43.478 0.00 0.00 29.94 1.28
326 327 4.081917 TGTCCTGTCACTCGCATTATACAA 60.082 41.667 0.00 0.00 0.00 2.41
327 328 4.868171 GTCCTGTCACTCGCATTATACAAA 59.132 41.667 0.00 0.00 0.00 2.83
340 341 6.071952 CGCATTATACAAAAGGCCAAGGATAT 60.072 38.462 5.01 0.00 32.71 1.63
349 350 7.038373 ACAAAAGGCCAAGGATATAACATGTTT 60.038 33.333 17.78 7.40 0.00 2.83
372 373 8.918202 TTTGATTCAAACACTAACTGTATCCT 57.082 30.769 7.74 0.00 30.51 3.24
380 381 6.607004 ACACTAACTGTATCCTAACAAGCT 57.393 37.500 0.00 0.00 0.00 3.74
381 382 7.005709 ACACTAACTGTATCCTAACAAGCTT 57.994 36.000 0.00 0.00 0.00 3.74
382 383 7.097834 ACACTAACTGTATCCTAACAAGCTTC 58.902 38.462 0.00 0.00 0.00 3.86
415 416 3.758521 TCGACGCGACTAAAAACTTTC 57.241 42.857 15.93 0.00 0.00 2.62
418 419 1.070376 ACGCGACTAAAAACTTTCGGC 60.070 47.619 15.93 0.00 32.04 5.54
423 424 5.487581 GCGACTAAAAACTTTCGGCTATAC 58.512 41.667 0.00 0.00 32.04 1.47
424 425 5.290400 GCGACTAAAAACTTTCGGCTATACT 59.710 40.000 0.00 0.00 32.04 2.12
426 427 7.305878 GCGACTAAAAACTTTCGGCTATACTAG 60.306 40.741 0.00 0.00 32.04 2.57
457 458 4.859629 ACGAAAGATTAACCGAGCAATC 57.140 40.909 0.00 0.00 0.00 2.67
465 466 0.179032 AACCGAGCAATCACACACCA 60.179 50.000 0.00 0.00 0.00 4.17
552 553 4.853924 AACTCCAATGCTACCTTTTGTG 57.146 40.909 0.00 0.00 0.00 3.33
582 585 0.179018 GCACATGGTATCTCCCCCAC 60.179 60.000 0.00 0.00 32.49 4.61
592 595 2.352561 TCTCCCCCACCTAACAATCA 57.647 50.000 0.00 0.00 0.00 2.57
593 596 2.858644 TCTCCCCCACCTAACAATCAT 58.141 47.619 0.00 0.00 0.00 2.45
595 599 2.509548 CTCCCCCACCTAACAATCATGA 59.490 50.000 0.00 0.00 0.00 3.07
630 634 3.646650 GCATGTGCACCGCAATAAT 57.353 47.368 20.12 0.88 41.47 1.28
642 650 0.317160 GCAATAATTTAGCCGGGCCC 59.683 55.000 17.02 13.57 0.00 5.80
644 652 2.247358 CAATAATTTAGCCGGGCCCAT 58.753 47.619 24.92 9.74 0.00 4.00
671 679 3.570550 CACTCACCCCGTTCCAAAATAAA 59.429 43.478 0.00 0.00 0.00 1.40
686 694 7.092079 TCCAAAATAAACGTCGTGATTCTAGA 58.908 34.615 0.00 0.00 0.00 2.43
690 698 9.577110 AAAATAAACGTCGTGATTCTAGATACA 57.423 29.630 0.00 0.00 0.00 2.29
828 885 6.183361 TGTCCTTCAGGTGGATTGTGATATAG 60.183 42.308 0.00 0.00 35.87 1.31
856 928 1.090625 CCGGTTCCAACACGTCAACA 61.091 55.000 0.00 0.00 0.00 3.33
858 931 1.088306 GGTTCCAACACGTCAACACA 58.912 50.000 0.00 0.00 0.00 3.72
863 936 1.465020 CCAACACGTCAACACACACAC 60.465 52.381 0.00 0.00 0.00 3.82
864 937 1.195674 CAACACGTCAACACACACACA 59.804 47.619 0.00 0.00 0.00 3.72
865 938 0.793861 ACACGTCAACACACACACAC 59.206 50.000 0.00 0.00 0.00 3.82
886 969 1.982938 CCGAGTCGAACCTCCCCTT 60.983 63.158 15.64 0.00 0.00 3.95
887 970 1.215647 CGAGTCGAACCTCCCCTTG 59.784 63.158 6.73 0.00 0.00 3.61
986 1073 2.856494 TTACCCAGCCACCAGCCA 60.856 61.111 0.00 0.00 45.47 4.75
987 1074 3.204467 TTACCCAGCCACCAGCCAC 62.204 63.158 0.00 0.00 45.47 5.01
1009 1096 1.006825 GCCAAAATCCGCGACCAAAC 61.007 55.000 8.23 0.00 0.00 2.93
1052 1139 0.179012 TTTCCGGAAAAACCCTCGCT 60.179 50.000 27.12 0.00 34.64 4.93
1194 1284 0.631998 AGGATGAGGAGGAGGAGGGA 60.632 60.000 0.00 0.00 0.00 4.20
1315 1405 4.070552 GGGTGAGTTCTCGCGGCT 62.071 66.667 6.13 0.00 0.00 5.52
1316 1406 2.811317 GGTGAGTTCTCGCGGCTG 60.811 66.667 6.13 0.00 0.00 4.85
1317 1407 2.811317 GTGAGTTCTCGCGGCTGG 60.811 66.667 6.13 0.00 0.00 4.85
1318 1408 4.742201 TGAGTTCTCGCGGCTGGC 62.742 66.667 6.13 0.00 38.69 4.85
1578 1669 3.739613 GGGGCGGGGTTGGAATCT 61.740 66.667 0.00 0.00 0.00 2.40
1594 1686 3.938963 GGAATCTGTTAATGCCGACTGAA 59.061 43.478 0.00 0.00 0.00 3.02
1618 1710 4.019051 ACAGAGTCCCAATGTGATTGATCA 60.019 41.667 0.00 0.00 42.83 2.92
1620 1712 3.285484 AGTCCCAATGTGATTGATCAGC 58.715 45.455 0.00 0.00 42.83 4.26
1625 1717 4.380761 CCCAATGTGATTGATCAGCGAAAA 60.381 41.667 0.00 0.00 42.83 2.29
1674 1769 1.023513 AATCACGCAGCTCTCTTGGC 61.024 55.000 0.00 0.00 0.00 4.52
1706 1801 6.658831 TCTGTTTTAGTTGCGAGATCTTTTG 58.341 36.000 0.00 0.00 0.00 2.44
1767 1862 9.685276 ATGAATCACATTTTATGAACCAGTAGA 57.315 29.630 0.00 0.00 35.45 2.59
1768 1863 9.685276 TGAATCACATTTTATGAACCAGTAGAT 57.315 29.630 0.00 0.00 0.00 1.98
1769 1864 9.941664 GAATCACATTTTATGAACCAGTAGATG 57.058 33.333 0.00 0.00 0.00 2.90
1770 1865 9.685276 AATCACATTTTATGAACCAGTAGATGA 57.315 29.630 0.00 0.00 0.00 2.92
1771 1866 8.492673 TCACATTTTATGAACCAGTAGATGAC 57.507 34.615 0.00 0.00 0.00 3.06
1780 1875 5.714806 TGAACCAGTAGATGACACACTATGA 59.285 40.000 0.00 0.00 0.00 2.15
1784 1879 5.981915 CCAGTAGATGACACACTATGACATG 59.018 44.000 0.00 0.00 42.69 3.21
1785 1880 5.461407 CAGTAGATGACACACTATGACATGC 59.539 44.000 0.00 0.00 42.69 4.06
1786 1881 4.476628 AGATGACACACTATGACATGCA 57.523 40.909 0.00 0.00 42.69 3.96
1787 1882 4.186926 AGATGACACACTATGACATGCAC 58.813 43.478 0.00 0.00 42.69 4.57
1799 1895 0.610232 ACATGCACAGCTTCCCTTCC 60.610 55.000 0.00 0.00 0.00 3.46
1806 1902 1.988107 ACAGCTTCCCTTCCTGAATGA 59.012 47.619 0.00 0.00 0.00 2.57
1812 1908 6.016443 CAGCTTCCCTTCCTGAATGAATAATC 60.016 42.308 0.00 0.00 0.00 1.75
1819 1915 7.013083 CCCTTCCTGAATGAATAATCTGTTCTG 59.987 40.741 0.00 0.00 0.00 3.02
1885 1981 1.179152 CTGCAACATGAGGGCATCAA 58.821 50.000 5.73 0.00 42.53 2.57
1905 2001 0.757935 GCATGGATGCCATTCCTGGT 60.758 55.000 0.00 0.00 42.23 4.00
1906 2002 1.325355 CATGGATGCCATTCCTGGTC 58.675 55.000 0.00 0.00 42.23 4.02
1917 2013 3.118112 CCATTCCTGGTCTGCTGATAGTT 60.118 47.826 0.00 0.00 37.79 2.24
1968 2064 5.596836 AGCTCTGAACCTCTCATCTTTAG 57.403 43.478 0.00 0.00 32.14 1.85
2050 2154 9.357652 GTATTTTGCATTGTCTGTGATTTATGT 57.642 29.630 0.00 0.00 0.00 2.29
2051 2155 7.640616 TTTTGCATTGTCTGTGATTTATGTG 57.359 32.000 0.00 0.00 0.00 3.21
2061 2165 6.201044 GTCTGTGATTTATGTGTCCGGATTAG 59.799 42.308 7.81 0.00 0.00 1.73
2277 2383 8.704234 GTTCACTGACTGTTTCTTTATCTACTG 58.296 37.037 0.00 0.00 0.00 2.74
2742 2851 1.004398 CTTGCAAAACACGTCTACGCA 60.004 47.619 0.00 0.00 44.43 5.24
2743 2852 0.579630 TGCAAAACACGTCTACGCAG 59.420 50.000 1.74 0.00 44.43 5.18
2744 2853 0.721483 GCAAAACACGTCTACGCAGC 60.721 55.000 1.74 0.00 44.43 5.25
2745 2854 0.859232 CAAAACACGTCTACGCAGCT 59.141 50.000 1.74 0.00 44.43 4.24
2746 2855 1.136611 CAAAACACGTCTACGCAGCTC 60.137 52.381 1.74 0.00 44.43 4.09
2747 2856 0.314302 AAACACGTCTACGCAGCTCT 59.686 50.000 1.74 0.00 44.43 4.09
2748 2857 0.109689 AACACGTCTACGCAGCTCTC 60.110 55.000 1.74 0.00 44.43 3.20
2850 2965 3.011818 CACTTCAATGCAGCCATAGACA 58.988 45.455 0.00 0.00 0.00 3.41
2852 2967 3.276857 CTTCAATGCAGCCATAGACAGT 58.723 45.455 0.00 0.00 0.00 3.55
3083 3198 0.790814 GTTACTGCGAGGTCAAGTGC 59.209 55.000 0.00 0.00 0.00 4.40
3134 3249 1.048160 TGGAGCAGACACACTCACCA 61.048 55.000 0.00 0.00 34.48 4.17
3145 3260 0.321210 CACTCACCATGCCCGTGTAA 60.321 55.000 1.28 0.00 32.86 2.41
3154 3269 2.613026 TGCCCGTGTAACATATGGAG 57.387 50.000 7.80 0.00 35.74 3.86
3203 3318 5.583854 CGAGTCAGAGAACATCAAATGGATT 59.416 40.000 0.00 0.00 32.57 3.01
3311 3426 6.017852 GCCAGTATATGTGGTAAGCTCTTTTC 60.018 42.308 7.56 0.00 37.40 2.29
3330 3445 4.422073 TTCACATATGGGGTCATCTGTC 57.578 45.455 4.82 0.00 38.23 3.51
3386 3501 2.090400 TCTGTGAACTGCTCATCAGC 57.910 50.000 0.00 0.00 46.76 4.26
3724 3840 3.173151 TGAGGACTCATACAAGGAGCAA 58.827 45.455 0.00 0.00 35.79 3.91
4012 4128 2.375766 GCTGTCGAAGGTGCTCGTG 61.376 63.158 0.00 0.00 39.84 4.35
4023 4139 0.669077 GTGCTCGTGACGGATATCCT 59.331 55.000 19.61 6.80 0.00 3.24
4168 4284 4.552365 CCCATGGACATCGCCGCT 62.552 66.667 15.22 0.00 0.00 5.52
4236 4355 1.742268 GGCTTCTTCACTTGGATGCTC 59.258 52.381 0.00 0.00 34.46 4.26
4237 4356 1.742268 GCTTCTTCACTTGGATGCTCC 59.258 52.381 0.00 0.00 36.96 4.70
4238 4357 2.877300 GCTTCTTCACTTGGATGCTCCA 60.877 50.000 1.25 1.25 46.61 3.86
4253 4375 1.383109 TCCATCTCCAGGCGGACAT 60.383 57.895 0.00 0.00 35.91 3.06
4256 4378 0.752658 CATCTCCAGGCGGACATACA 59.247 55.000 0.00 0.00 35.91 2.29
4418 4568 6.854091 AGATTATTATTACTCCCTCCGTCC 57.146 41.667 0.00 0.00 0.00 4.79
4419 4569 5.720520 AGATTATTATTACTCCCTCCGTCCC 59.279 44.000 0.00 0.00 0.00 4.46
4420 4570 2.852714 TTATTACTCCCTCCGTCCCA 57.147 50.000 0.00 0.00 0.00 4.37
4421 4571 2.852714 TATTACTCCCTCCGTCCCAA 57.147 50.000 0.00 0.00 0.00 4.12
4422 4572 2.191981 ATTACTCCCTCCGTCCCAAT 57.808 50.000 0.00 0.00 0.00 3.16
4423 4573 1.200519 TTACTCCCTCCGTCCCAATG 58.799 55.000 0.00 0.00 0.00 2.82
4424 4574 0.042131 TACTCCCTCCGTCCCAATGT 59.958 55.000 0.00 0.00 0.00 2.71
4425 4575 0.042131 ACTCCCTCCGTCCCAATGTA 59.958 55.000 0.00 0.00 0.00 2.29
4426 4576 1.200519 CTCCCTCCGTCCCAATGTAA 58.799 55.000 0.00 0.00 0.00 2.41
4427 4577 1.139058 CTCCCTCCGTCCCAATGTAAG 59.861 57.143 0.00 0.00 0.00 2.34
4428 4578 0.909623 CCCTCCGTCCCAATGTAAGT 59.090 55.000 0.00 0.00 0.00 2.24
4429 4579 1.134491 CCCTCCGTCCCAATGTAAGTC 60.134 57.143 0.00 0.00 0.00 3.01
4430 4580 1.553248 CCTCCGTCCCAATGTAAGTCA 59.447 52.381 0.00 0.00 0.00 3.41
4431 4581 2.170607 CCTCCGTCCCAATGTAAGTCAT 59.829 50.000 0.00 0.00 38.57 3.06
4432 4582 3.370527 CCTCCGTCCCAATGTAAGTCATT 60.371 47.826 0.00 0.00 46.32 2.57
4433 4583 4.261801 CTCCGTCCCAATGTAAGTCATTT 58.738 43.478 0.00 0.00 43.33 2.32
4434 4584 4.658063 TCCGTCCCAATGTAAGTCATTTT 58.342 39.130 0.00 0.00 43.33 1.82
4435 4585 5.074115 TCCGTCCCAATGTAAGTCATTTTT 58.926 37.500 0.00 0.00 43.33 1.94
4477 4627 4.823790 AAAACGTCTTACATTGTGGGAC 57.176 40.909 0.00 6.72 0.00 4.46
4479 4629 1.355971 CGTCTTACATTGTGGGACGG 58.644 55.000 24.96 14.26 43.69 4.79
4480 4630 1.067425 CGTCTTACATTGTGGGACGGA 60.067 52.381 24.96 5.37 43.69 4.69
4481 4631 2.618053 GTCTTACATTGTGGGACGGAG 58.382 52.381 0.00 0.00 0.00 4.63
4482 4632 1.553248 TCTTACATTGTGGGACGGAGG 59.447 52.381 0.00 0.00 0.00 4.30
4483 4633 0.616371 TTACATTGTGGGACGGAGGG 59.384 55.000 0.00 0.00 0.00 4.30
4484 4634 0.252330 TACATTGTGGGACGGAGGGA 60.252 55.000 0.00 0.00 0.00 4.20
4485 4635 1.221840 CATTGTGGGACGGAGGGAG 59.778 63.158 0.00 0.00 0.00 4.30
4504 4654 3.503748 GGAGTAGTTTGCAAGTGAAGCAT 59.496 43.478 0.00 0.00 42.33 3.79
4525 4679 2.364324 TGTACGGGTTCATCCAGCTATC 59.636 50.000 0.00 0.00 38.11 2.08
4723 4909 6.944557 TTAATATCGTTAGATGCATCGTGG 57.055 37.500 20.67 11.59 37.70 4.94
4724 4910 4.783764 ATATCGTTAGATGCATCGTGGA 57.216 40.909 20.67 16.10 37.70 4.02
4739 4925 6.202762 TGCATCGTGGAACTAATATTTGCTAG 59.797 38.462 0.00 0.00 31.75 3.42
4740 4926 6.202954 GCATCGTGGAACTAATATTTGCTAGT 59.797 38.462 0.00 0.00 31.75 2.57
4741 4927 7.384115 GCATCGTGGAACTAATATTTGCTAGTA 59.616 37.037 0.00 0.00 31.75 1.82
4742 4928 9.424319 CATCGTGGAACTAATATTTGCTAGTAT 57.576 33.333 0.00 0.00 31.75 2.12
4743 4929 9.998106 ATCGTGGAACTAATATTTGCTAGTATT 57.002 29.630 0.00 1.96 31.75 1.89
4876 5062 8.350852 AGAAGTATATATACGAGGACTTTGGG 57.649 38.462 15.57 0.00 38.28 4.12
4877 5063 8.168725 AGAAGTATATATACGAGGACTTTGGGA 58.831 37.037 15.57 0.00 38.28 4.37
4907 5093 7.123355 TCATGGATAAATGATTTTGTTCCCC 57.877 36.000 0.00 0.00 31.58 4.81
4975 5163 2.796031 GTGGCATGTGTGTGTTCAATTG 59.204 45.455 0.00 0.00 0.00 2.32
5020 5209 7.063191 GCTATGTGTATGTGCAATCTATGAGAG 59.937 40.741 0.00 0.00 0.00 3.20
5037 5226 9.152327 TCTATGAGAGATATGTTTCCATTGAGT 57.848 33.333 0.00 0.00 32.29 3.41
5098 5287 2.960819 AGTGTAGTTCATTCGAGTGCC 58.039 47.619 2.51 0.00 0.00 5.01
5119 5308 8.512138 AGTGCCTAATTAAGTTGTGTAATGTTC 58.488 33.333 0.00 0.00 0.00 3.18
5130 5319 8.232913 AGTTGTGTAATGTTCCACTATTTTGT 57.767 30.769 0.00 0.00 32.76 2.83
5131 5320 9.344772 AGTTGTGTAATGTTCCACTATTTTGTA 57.655 29.630 0.00 0.00 32.76 2.41
5132 5321 9.389570 GTTGTGTAATGTTCCACTATTTTGTAC 57.610 33.333 0.00 0.00 32.76 2.90
5133 5322 8.911918 TGTGTAATGTTCCACTATTTTGTACT 57.088 30.769 0.00 0.00 32.76 2.73
5134 5323 9.999660 TGTGTAATGTTCCACTATTTTGTACTA 57.000 29.630 0.00 0.00 32.76 1.82
5136 5325 9.439500 TGTAATGTTCCACTATTTTGTACTACC 57.561 33.333 0.00 0.00 0.00 3.18
5137 5326 9.662947 GTAATGTTCCACTATTTTGTACTACCT 57.337 33.333 0.00 0.00 0.00 3.08
5138 5327 8.788325 AATGTTCCACTATTTTGTACTACCTC 57.212 34.615 0.00 0.00 0.00 3.85
5139 5328 6.704310 TGTTCCACTATTTTGTACTACCTCC 58.296 40.000 0.00 0.00 0.00 4.30
5140 5329 5.587388 TCCACTATTTTGTACTACCTCCG 57.413 43.478 0.00 0.00 0.00 4.63
5141 5330 5.018809 TCCACTATTTTGTACTACCTCCGT 58.981 41.667 0.00 0.00 0.00 4.69
5142 5331 6.186957 TCCACTATTTTGTACTACCTCCGTA 58.813 40.000 0.00 0.00 0.00 4.02
5143 5332 6.319658 TCCACTATTTTGTACTACCTCCGTAG 59.680 42.308 0.00 0.00 46.41 3.51
5144 5333 6.319658 CCACTATTTTGTACTACCTCCGTAGA 59.680 42.308 4.36 0.00 44.18 2.59
5145 5334 7.148018 CCACTATTTTGTACTACCTCCGTAGAA 60.148 40.741 4.36 0.00 44.18 2.10
5146 5335 8.246180 CACTATTTTGTACTACCTCCGTAGAAA 58.754 37.037 4.36 0.00 44.18 2.52
5147 5336 8.806146 ACTATTTTGTACTACCTCCGTAGAAAA 58.194 33.333 4.36 7.41 44.18 2.29
5148 5337 9.643693 CTATTTTGTACTACCTCCGTAGAAAAA 57.356 33.333 4.36 7.96 44.18 1.94
5157 5346 9.322773 ACTACCTCCGTAGAAAAATATAAAAGC 57.677 33.333 4.36 0.00 44.18 3.51
5158 5347 7.242914 ACCTCCGTAGAAAAATATAAAAGCG 57.757 36.000 0.00 0.00 0.00 4.68
5159 5348 6.820152 ACCTCCGTAGAAAAATATAAAAGCGT 59.180 34.615 0.00 0.00 0.00 5.07
5160 5349 7.335171 ACCTCCGTAGAAAAATATAAAAGCGTT 59.665 33.333 0.00 0.00 0.00 4.84
5161 5350 8.179615 CCTCCGTAGAAAAATATAAAAGCGTTT 58.820 33.333 2.53 2.53 0.00 3.60
5181 5370 9.988350 AGCGTTTAAATCACTACTTTAATGATG 57.012 29.630 0.00 0.00 33.37 3.07
5182 5371 9.769093 GCGTTTAAATCACTACTTTAATGATGT 57.231 29.630 0.00 0.00 33.37 3.06
5188 5377 9.769093 AAATCACTACTTTAATGATGTAAACGC 57.231 29.630 0.00 0.00 33.37 4.84
5189 5378 8.718102 ATCACTACTTTAATGATGTAAACGCT 57.282 30.769 0.00 0.00 31.84 5.07
5190 5379 8.181487 TCACTACTTTAATGATGTAAACGCTC 57.819 34.615 0.00 0.00 0.00 5.03
5191 5380 8.033038 TCACTACTTTAATGATGTAAACGCTCT 58.967 33.333 0.00 0.00 0.00 4.09
5192 5381 8.656849 CACTACTTTAATGATGTAAACGCTCTT 58.343 33.333 0.00 0.00 0.00 2.85
5193 5382 9.865321 ACTACTTTAATGATGTAAACGCTCTTA 57.135 29.630 0.00 0.00 0.00 2.10
5209 5398 8.649973 AACGCTCTTATATTTCTTTACAGAGG 57.350 34.615 0.00 0.00 0.00 3.69
5210 5399 7.210873 ACGCTCTTATATTTCTTTACAGAGGG 58.789 38.462 8.36 8.36 42.53 4.30
5211 5400 7.069578 ACGCTCTTATATTTCTTTACAGAGGGA 59.930 37.037 14.96 0.00 40.49 4.20
5247 5436 4.080015 TCCCAAAATGTACTAGTGATGGGG 60.080 45.833 20.08 14.84 45.09 4.96
5281 5471 1.097547 CCGCTAAGGCCAATGGTCTG 61.098 60.000 7.36 0.00 36.17 3.51
5323 5513 0.685660 GAAACTCCCACGGACTTCCT 59.314 55.000 0.00 0.00 0.00 3.36
5330 5520 2.907696 TCCCACGGACTTCCTTTCATTA 59.092 45.455 0.00 0.00 0.00 1.90
5337 5527 3.869832 GGACTTCCTTTCATTAGTACCGC 59.130 47.826 0.00 0.00 0.00 5.68
5351 5541 2.417933 AGTACCGCTGTTACTAGTGACG 59.582 50.000 12.62 8.76 0.00 4.35
5364 5554 2.749280 AGTGACGAGCATCATGTGAA 57.251 45.000 0.00 0.00 33.17 3.18
5365 5555 3.044235 AGTGACGAGCATCATGTGAAA 57.956 42.857 0.00 0.00 33.17 2.69
5374 5564 5.565259 CGAGCATCATGTGAAAAGTTGTTAC 59.435 40.000 0.00 0.00 33.17 2.50
5381 5571 5.229921 TGTGAAAAGTTGTTACTGACTGC 57.770 39.130 0.00 0.00 34.01 4.40
5382 5572 4.697828 TGTGAAAAGTTGTTACTGACTGCA 59.302 37.500 0.00 0.00 34.01 4.41
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
4 5 9.965902 AAGATTTAAGGTTGATCAAGACTATGT 57.034 29.630 8.80 0.00 0.00 2.29
7 8 9.449719 GGAAAGATTTAAGGTTGATCAAGACTA 57.550 33.333 8.80 0.00 0.00 2.59
8 9 7.944554 TGGAAAGATTTAAGGTTGATCAAGACT 59.055 33.333 8.80 7.58 0.00 3.24
9 10 8.110860 TGGAAAGATTTAAGGTTGATCAAGAC 57.889 34.615 8.80 5.15 0.00 3.01
10 11 8.576442 GTTGGAAAGATTTAAGGTTGATCAAGA 58.424 33.333 8.80 0.00 0.00 3.02
11 12 8.579863 AGTTGGAAAGATTTAAGGTTGATCAAG 58.420 33.333 8.80 0.00 0.00 3.02
12 13 8.477419 AGTTGGAAAGATTTAAGGTTGATCAA 57.523 30.769 3.38 3.38 0.00 2.57
13 14 8.477419 AAGTTGGAAAGATTTAAGGTTGATCA 57.523 30.769 0.00 0.00 0.00 2.92
14 15 9.411801 GAAAGTTGGAAAGATTTAAGGTTGATC 57.588 33.333 0.00 0.00 0.00 2.92
15 16 9.147732 AGAAAGTTGGAAAGATTTAAGGTTGAT 57.852 29.630 0.00 0.00 0.00 2.57
16 17 8.533569 AGAAAGTTGGAAAGATTTAAGGTTGA 57.466 30.769 0.00 0.00 0.00 3.18
17 18 9.249457 GAAGAAAGTTGGAAAGATTTAAGGTTG 57.751 33.333 0.00 0.00 0.00 3.77
18 19 8.977412 TGAAGAAAGTTGGAAAGATTTAAGGTT 58.023 29.630 0.00 0.00 0.00 3.50
19 20 8.533569 TGAAGAAAGTTGGAAAGATTTAAGGT 57.466 30.769 0.00 0.00 0.00 3.50
20 21 9.987272 AATGAAGAAAGTTGGAAAGATTTAAGG 57.013 29.630 0.00 0.00 0.00 2.69
27 28 9.573166 TCATCTTAATGAAGAAAGTTGGAAAGA 57.427 29.630 0.00 0.00 44.85 2.52
30 31 9.300681 ACATCATCTTAATGAAGAAAGTTGGAA 57.699 29.630 0.00 0.00 44.85 3.53
31 32 8.868522 ACATCATCTTAATGAAGAAAGTTGGA 57.131 30.769 0.00 0.00 44.85 3.53
32 33 8.954350 AGACATCATCTTAATGAAGAAAGTTGG 58.046 33.333 0.00 0.00 44.85 3.77
35 36 9.730705 TCAAGACATCATCTTAATGAAGAAAGT 57.269 29.630 0.00 0.00 46.52 2.66
38 39 9.170734 CCTTCAAGACATCATCTTAATGAAGAA 57.829 33.333 14.28 3.09 46.52 2.52
39 40 8.324306 ACCTTCAAGACATCATCTTAATGAAGA 58.676 33.333 14.28 0.00 46.52 2.87
40 41 8.503458 ACCTTCAAGACATCATCTTAATGAAG 57.497 34.615 8.77 8.77 46.52 3.02
41 42 9.958180 TTACCTTCAAGACATCATCTTAATGAA 57.042 29.630 0.00 0.00 46.52 2.57
42 43 9.958180 TTTACCTTCAAGACATCATCTTAATGA 57.042 29.630 0.00 0.00 46.52 2.57
43 44 9.994432 GTTTACCTTCAAGACATCATCTTAATG 57.006 33.333 0.00 0.00 46.52 1.90
44 45 9.739276 TGTTTACCTTCAAGACATCATCTTAAT 57.261 29.630 0.00 0.00 46.52 1.40
45 46 9.739276 ATGTTTACCTTCAAGACATCATCTTAA 57.261 29.630 0.00 0.00 46.52 1.85
46 47 9.166173 CATGTTTACCTTCAAGACATCATCTTA 57.834 33.333 0.00 0.00 46.52 2.10
48 49 7.397221 TCATGTTTACCTTCAAGACATCATCT 58.603 34.615 0.00 0.00 40.46 2.90
49 50 7.615582 TCATGTTTACCTTCAAGACATCATC 57.384 36.000 0.00 0.00 0.00 2.92
50 51 8.464404 CATTCATGTTTACCTTCAAGACATCAT 58.536 33.333 0.00 0.00 0.00 2.45
51 52 7.448161 ACATTCATGTTTACCTTCAAGACATCA 59.552 33.333 0.00 0.00 37.90 3.07
52 53 7.820648 ACATTCATGTTTACCTTCAAGACATC 58.179 34.615 0.00 0.00 37.90 3.06
53 54 7.765695 ACATTCATGTTTACCTTCAAGACAT 57.234 32.000 0.00 0.00 37.90 3.06
68 69 9.017509 AGAATAAGATTGTGTGAACATTCATGT 57.982 29.630 0.00 0.00 44.20 3.21
69 70 9.850628 AAGAATAAGATTGTGTGAACATTCATG 57.149 29.630 0.00 0.00 39.73 3.07
71 72 9.065798 TGAAGAATAAGATTGTGTGAACATTCA 57.934 29.630 0.00 0.00 34.20 2.57
72 73 9.897744 TTGAAGAATAAGATTGTGTGAACATTC 57.102 29.630 0.00 0.00 0.00 2.67
73 74 9.903682 CTTGAAGAATAAGATTGTGTGAACATT 57.096 29.630 0.00 0.00 0.00 2.71
74 75 9.288576 TCTTGAAGAATAAGATTGTGTGAACAT 57.711 29.630 0.00 0.00 29.68 2.71
75 76 8.559536 GTCTTGAAGAATAAGATTGTGTGAACA 58.440 33.333 0.00 0.00 36.63 3.18
76 77 8.778358 AGTCTTGAAGAATAAGATTGTGTGAAC 58.222 33.333 0.00 0.00 36.63 3.18
77 78 8.908786 AGTCTTGAAGAATAAGATTGTGTGAA 57.091 30.769 0.00 0.00 36.63 3.18
78 79 8.777413 CAAGTCTTGAAGAATAAGATTGTGTGA 58.223 33.333 6.76 0.00 36.63 3.58
79 80 8.562892 ACAAGTCTTGAAGAATAAGATTGTGTG 58.437 33.333 19.53 0.00 36.17 3.82
80 81 8.682936 ACAAGTCTTGAAGAATAAGATTGTGT 57.317 30.769 19.53 0.00 36.17 3.72
81 82 9.956720 AAACAAGTCTTGAAGAATAAGATTGTG 57.043 29.630 19.53 0.00 36.78 3.33
82 83 9.956720 CAAACAAGTCTTGAAGAATAAGATTGT 57.043 29.630 19.53 0.00 37.42 2.71
83 84 8.909671 GCAAACAAGTCTTGAAGAATAAGATTG 58.090 33.333 19.53 5.26 36.63 2.67
84 85 8.632679 TGCAAACAAGTCTTGAAGAATAAGATT 58.367 29.630 19.53 0.00 36.63 2.40
85 86 8.169977 TGCAAACAAGTCTTGAAGAATAAGAT 57.830 30.769 19.53 0.00 36.63 2.40
86 87 7.566760 TGCAAACAAGTCTTGAAGAATAAGA 57.433 32.000 19.53 0.00 32.08 2.10
87 88 8.807667 ATTGCAAACAAGTCTTGAAGAATAAG 57.192 30.769 19.53 0.00 39.69 1.73
89 90 9.897744 CTTATTGCAAACAAGTCTTGAAGAATA 57.102 29.630 19.53 10.15 39.69 1.75
90 91 7.383300 GCTTATTGCAAACAAGTCTTGAAGAAT 59.617 33.333 19.53 10.96 39.69 2.40
91 92 6.697019 GCTTATTGCAAACAAGTCTTGAAGAA 59.303 34.615 19.53 5.41 39.69 2.52
92 93 6.039717 AGCTTATTGCAAACAAGTCTTGAAGA 59.960 34.615 19.53 0.00 45.94 2.87
93 94 6.211515 AGCTTATTGCAAACAAGTCTTGAAG 58.788 36.000 19.53 10.14 45.94 3.02
94 95 6.147864 AGCTTATTGCAAACAAGTCTTGAA 57.852 33.333 19.53 2.97 45.94 2.69
95 96 5.299028 TGAGCTTATTGCAAACAAGTCTTGA 59.701 36.000 19.53 0.00 45.94 3.02
96 97 5.522456 TGAGCTTATTGCAAACAAGTCTTG 58.478 37.500 19.56 11.17 45.94 3.02
97 98 5.772825 TGAGCTTATTGCAAACAAGTCTT 57.227 34.783 19.56 10.04 45.94 3.01
98 99 5.300286 AGTTGAGCTTATTGCAAACAAGTCT 59.700 36.000 19.56 17.02 45.94 3.24
99 100 5.523369 AGTTGAGCTTATTGCAAACAAGTC 58.477 37.500 19.56 16.24 45.94 3.01
100 101 5.067674 TGAGTTGAGCTTATTGCAAACAAGT 59.932 36.000 19.56 13.89 45.94 3.16
101 102 5.400485 GTGAGTTGAGCTTATTGCAAACAAG 59.600 40.000 16.10 16.10 45.94 3.16
102 103 5.163571 TGTGAGTTGAGCTTATTGCAAACAA 60.164 36.000 1.71 0.00 45.94 2.83
103 104 4.337836 TGTGAGTTGAGCTTATTGCAAACA 59.662 37.500 1.71 0.00 45.94 2.83
104 105 4.676924 GTGTGAGTTGAGCTTATTGCAAAC 59.323 41.667 1.71 0.00 45.94 2.93
105 106 4.337836 TGTGTGAGTTGAGCTTATTGCAAA 59.662 37.500 1.71 0.00 45.94 3.68
106 107 3.882288 TGTGTGAGTTGAGCTTATTGCAA 59.118 39.130 0.00 0.00 45.94 4.08
107 108 3.475575 TGTGTGAGTTGAGCTTATTGCA 58.524 40.909 0.00 0.00 45.94 4.08
108 109 4.154737 TCATGTGTGAGTTGAGCTTATTGC 59.845 41.667 0.00 0.00 43.29 3.56
109 110 5.391310 GGTCATGTGTGAGTTGAGCTTATTG 60.391 44.000 0.00 0.00 35.55 1.90
110 111 4.697352 GGTCATGTGTGAGTTGAGCTTATT 59.303 41.667 0.00 0.00 35.55 1.40
111 112 4.256920 GGTCATGTGTGAGTTGAGCTTAT 58.743 43.478 0.00 0.00 35.55 1.73
112 113 3.070878 TGGTCATGTGTGAGTTGAGCTTA 59.929 43.478 0.00 0.00 38.39 3.09
113 114 2.158769 TGGTCATGTGTGAGTTGAGCTT 60.159 45.455 0.00 0.00 38.39 3.74
114 115 1.417517 TGGTCATGTGTGAGTTGAGCT 59.582 47.619 0.00 0.00 38.39 4.09
115 116 1.882912 TGGTCATGTGTGAGTTGAGC 58.117 50.000 0.00 0.00 38.14 4.26
116 117 4.321718 AGATTGGTCATGTGTGAGTTGAG 58.678 43.478 0.00 0.00 34.36 3.02
117 118 4.356405 AGATTGGTCATGTGTGAGTTGA 57.644 40.909 0.00 0.00 34.36 3.18
118 119 5.217393 CAAAGATTGGTCATGTGTGAGTTG 58.783 41.667 0.00 0.00 34.36 3.16
119 120 4.279169 CCAAAGATTGGTCATGTGTGAGTT 59.721 41.667 0.87 0.00 45.93 3.01
120 121 3.822735 CCAAAGATTGGTCATGTGTGAGT 59.177 43.478 0.87 0.00 45.93 3.41
121 122 4.430137 CCAAAGATTGGTCATGTGTGAG 57.570 45.455 0.87 0.00 45.93 3.51
135 136 9.337396 TGTGCTATTAACGATTTATCCAAAGAT 57.663 29.630 0.00 0.00 36.44 2.40
136 137 8.725405 TGTGCTATTAACGATTTATCCAAAGA 57.275 30.769 0.00 0.00 0.00 2.52
137 138 9.950680 AATGTGCTATTAACGATTTATCCAAAG 57.049 29.630 0.00 0.00 0.00 2.77
138 139 9.729023 CAATGTGCTATTAACGATTTATCCAAA 57.271 29.630 0.00 0.00 0.00 3.28
139 140 8.349245 CCAATGTGCTATTAACGATTTATCCAA 58.651 33.333 0.00 0.00 0.00 3.53
140 141 7.500892 ACCAATGTGCTATTAACGATTTATCCA 59.499 33.333 0.00 0.00 0.00 3.41
141 142 7.871853 ACCAATGTGCTATTAACGATTTATCC 58.128 34.615 0.00 0.00 0.00 2.59
142 143 8.556194 TGACCAATGTGCTATTAACGATTTATC 58.444 33.333 0.00 0.00 0.00 1.75
143 144 8.445275 TGACCAATGTGCTATTAACGATTTAT 57.555 30.769 0.00 0.00 0.00 1.40
144 145 7.851387 TGACCAATGTGCTATTAACGATTTA 57.149 32.000 0.00 0.00 0.00 1.40
145 146 6.751514 TGACCAATGTGCTATTAACGATTT 57.248 33.333 0.00 0.00 0.00 2.17
146 147 6.150307 TGTTGACCAATGTGCTATTAACGATT 59.850 34.615 0.00 0.00 0.00 3.34
147 148 5.645929 TGTTGACCAATGTGCTATTAACGAT 59.354 36.000 0.00 0.00 0.00 3.73
148 149 4.998033 TGTTGACCAATGTGCTATTAACGA 59.002 37.500 0.00 0.00 0.00 3.85
149 150 5.086058 GTGTTGACCAATGTGCTATTAACG 58.914 41.667 0.00 0.00 0.00 3.18
150 151 6.007936 TGTGTTGACCAATGTGCTATTAAC 57.992 37.500 0.00 0.00 0.00 2.01
151 152 6.832520 ATGTGTTGACCAATGTGCTATTAA 57.167 33.333 0.00 0.00 0.00 1.40
152 153 7.929941 TTATGTGTTGACCAATGTGCTATTA 57.070 32.000 0.00 0.00 0.00 0.98
153 154 6.832520 TTATGTGTTGACCAATGTGCTATT 57.167 33.333 0.00 0.00 0.00 1.73
154 155 6.350110 GGTTTATGTGTTGACCAATGTGCTAT 60.350 38.462 0.00 0.00 32.41 2.97
155 156 5.048364 GGTTTATGTGTTGACCAATGTGCTA 60.048 40.000 0.00 0.00 32.41 3.49
156 157 4.261994 GGTTTATGTGTTGACCAATGTGCT 60.262 41.667 0.00 0.00 32.41 4.40
157 158 3.987220 GGTTTATGTGTTGACCAATGTGC 59.013 43.478 0.00 0.00 32.41 4.57
158 159 4.555262 GGGTTTATGTGTTGACCAATGTG 58.445 43.478 0.00 0.00 33.81 3.21
159 160 3.576550 GGGGTTTATGTGTTGACCAATGT 59.423 43.478 0.00 0.00 33.81 2.71
160 161 3.831911 AGGGGTTTATGTGTTGACCAATG 59.168 43.478 0.00 0.00 33.81 2.82
161 162 4.126520 AGGGGTTTATGTGTTGACCAAT 57.873 40.909 0.00 0.00 33.81 3.16
162 163 3.603965 AGGGGTTTATGTGTTGACCAA 57.396 42.857 0.00 0.00 33.81 3.67
163 164 3.117474 TCAAGGGGTTTATGTGTTGACCA 60.117 43.478 0.00 0.00 33.81 4.02
164 165 3.492337 TCAAGGGGTTTATGTGTTGACC 58.508 45.455 0.00 0.00 0.00 4.02
165 166 5.286438 GTTTCAAGGGGTTTATGTGTTGAC 58.714 41.667 0.00 0.00 0.00 3.18
166 167 4.342665 GGTTTCAAGGGGTTTATGTGTTGA 59.657 41.667 0.00 0.00 0.00 3.18
167 168 4.100189 TGGTTTCAAGGGGTTTATGTGTTG 59.900 41.667 0.00 0.00 0.00 3.33
168 169 4.290942 TGGTTTCAAGGGGTTTATGTGTT 58.709 39.130 0.00 0.00 0.00 3.32
169 170 3.917300 TGGTTTCAAGGGGTTTATGTGT 58.083 40.909 0.00 0.00 0.00 3.72
170 171 4.100189 TGTTGGTTTCAAGGGGTTTATGTG 59.900 41.667 0.00 0.00 32.92 3.21
171 172 4.100344 GTGTTGGTTTCAAGGGGTTTATGT 59.900 41.667 0.00 0.00 32.92 2.29
172 173 4.100189 TGTGTTGGTTTCAAGGGGTTTATG 59.900 41.667 0.00 0.00 32.92 1.90
173 174 4.290942 TGTGTTGGTTTCAAGGGGTTTAT 58.709 39.130 0.00 0.00 32.92 1.40
174 175 3.709587 TGTGTTGGTTTCAAGGGGTTTA 58.290 40.909 0.00 0.00 32.92 2.01
175 176 2.541466 TGTGTTGGTTTCAAGGGGTTT 58.459 42.857 0.00 0.00 32.92 3.27
176 177 2.239681 TGTGTTGGTTTCAAGGGGTT 57.760 45.000 0.00 0.00 32.92 4.11
177 178 2.038659 CATGTGTTGGTTTCAAGGGGT 58.961 47.619 0.00 0.00 32.92 4.95
178 179 1.344114 CCATGTGTTGGTTTCAAGGGG 59.656 52.381 0.00 0.00 40.99 4.79
179 180 2.035832 GTCCATGTGTTGGTTTCAAGGG 59.964 50.000 0.00 0.00 46.52 3.95
180 181 2.958355 AGTCCATGTGTTGGTTTCAAGG 59.042 45.455 0.00 0.00 46.52 3.61
181 182 4.097741 TGAAGTCCATGTGTTGGTTTCAAG 59.902 41.667 9.97 0.00 46.52 3.02
182 183 4.019858 TGAAGTCCATGTGTTGGTTTCAA 58.980 39.130 9.97 0.00 46.52 2.69
183 184 3.625853 TGAAGTCCATGTGTTGGTTTCA 58.374 40.909 8.94 8.94 46.52 2.69
184 185 4.338118 TCTTGAAGTCCATGTGTTGGTTTC 59.662 41.667 0.00 0.00 46.52 2.78
185 186 4.277476 TCTTGAAGTCCATGTGTTGGTTT 58.723 39.130 0.00 0.00 46.52 3.27
186 187 3.897239 TCTTGAAGTCCATGTGTTGGTT 58.103 40.909 0.00 0.00 46.52 3.67
187 188 3.576078 TCTTGAAGTCCATGTGTTGGT 57.424 42.857 0.00 0.00 46.52 3.67
189 190 5.043248 GGTTTTCTTGAAGTCCATGTGTTG 58.957 41.667 0.00 0.00 0.00 3.33
190 191 4.956075 AGGTTTTCTTGAAGTCCATGTGTT 59.044 37.500 0.00 0.00 0.00 3.32
191 192 4.536765 AGGTTTTCTTGAAGTCCATGTGT 58.463 39.130 0.00 0.00 0.00 3.72
192 193 6.349611 CCATAGGTTTTCTTGAAGTCCATGTG 60.350 42.308 0.00 0.00 0.00 3.21
193 194 5.711976 CCATAGGTTTTCTTGAAGTCCATGT 59.288 40.000 0.00 0.00 0.00 3.21
194 195 5.945784 TCCATAGGTTTTCTTGAAGTCCATG 59.054 40.000 0.00 0.00 0.00 3.66
195 196 5.946377 GTCCATAGGTTTTCTTGAAGTCCAT 59.054 40.000 0.00 0.00 0.00 3.41
196 197 5.163141 TGTCCATAGGTTTTCTTGAAGTCCA 60.163 40.000 0.00 0.00 0.00 4.02
197 198 5.313712 TGTCCATAGGTTTTCTTGAAGTCC 58.686 41.667 0.00 0.00 0.00 3.85
198 199 6.877611 TTGTCCATAGGTTTTCTTGAAGTC 57.122 37.500 0.00 0.00 0.00 3.01
199 200 7.039714 GGATTTGTCCATAGGTTTTCTTGAAGT 60.040 37.037 0.00 0.00 0.00 3.01
200 201 7.177392 AGGATTTGTCCATAGGTTTTCTTGAAG 59.823 37.037 0.00 0.00 0.00 3.02
201 202 7.010160 AGGATTTGTCCATAGGTTTTCTTGAA 58.990 34.615 0.00 0.00 0.00 2.69
202 203 6.552008 AGGATTTGTCCATAGGTTTTCTTGA 58.448 36.000 0.00 0.00 0.00 3.02
203 204 6.840780 AGGATTTGTCCATAGGTTTTCTTG 57.159 37.500 0.00 0.00 0.00 3.02
204 205 7.010160 TGAAGGATTTGTCCATAGGTTTTCTT 58.990 34.615 0.00 0.00 0.00 2.52
205 206 6.552008 TGAAGGATTTGTCCATAGGTTTTCT 58.448 36.000 0.00 0.00 0.00 2.52
206 207 6.834168 TGAAGGATTTGTCCATAGGTTTTC 57.166 37.500 0.00 0.00 0.00 2.29
207 208 7.610580 TTTGAAGGATTTGTCCATAGGTTTT 57.389 32.000 0.00 0.00 0.00 2.43
208 209 7.797121 ATTTGAAGGATTTGTCCATAGGTTT 57.203 32.000 0.00 0.00 0.00 3.27
210 211 9.799106 CTATATTTGAAGGATTTGTCCATAGGT 57.201 33.333 0.00 0.00 0.00 3.08
211 212 8.734386 GCTATATTTGAAGGATTTGTCCATAGG 58.266 37.037 0.00 0.00 0.00 2.57
212 213 9.512588 AGCTATATTTGAAGGATTTGTCCATAG 57.487 33.333 0.00 0.00 0.00 2.23
213 214 9.507329 GAGCTATATTTGAAGGATTTGTCCATA 57.493 33.333 0.00 0.00 0.00 2.74
214 215 8.000709 TGAGCTATATTTGAAGGATTTGTCCAT 58.999 33.333 0.00 0.00 0.00 3.41
215 216 7.345691 TGAGCTATATTTGAAGGATTTGTCCA 58.654 34.615 0.00 0.00 0.00 4.02
216 217 7.807977 TGAGCTATATTTGAAGGATTTGTCC 57.192 36.000 0.00 0.00 0.00 4.02
217 218 8.348507 CCTTGAGCTATATTTGAAGGATTTGTC 58.651 37.037 0.00 0.00 33.17 3.18
218 219 7.201857 GCCTTGAGCTATATTTGAAGGATTTGT 60.202 37.037 0.00 0.00 38.99 2.83
219 220 7.144000 GCCTTGAGCTATATTTGAAGGATTTG 58.856 38.462 0.00 0.00 38.99 2.32
220 221 6.835488 TGCCTTGAGCTATATTTGAAGGATTT 59.165 34.615 0.00 0.00 44.23 2.17
221 222 6.367983 TGCCTTGAGCTATATTTGAAGGATT 58.632 36.000 0.00 0.00 44.23 3.01
222 223 5.945310 TGCCTTGAGCTATATTTGAAGGAT 58.055 37.500 0.00 0.00 44.23 3.24
223 224 5.372343 TGCCTTGAGCTATATTTGAAGGA 57.628 39.130 0.00 0.00 44.23 3.36
224 225 5.221126 GGTTGCCTTGAGCTATATTTGAAGG 60.221 44.000 0.00 0.00 44.23 3.46
225 226 5.357878 TGGTTGCCTTGAGCTATATTTGAAG 59.642 40.000 0.00 0.00 44.23 3.02
226 227 5.260424 TGGTTGCCTTGAGCTATATTTGAA 58.740 37.500 0.00 0.00 44.23 2.69
227 228 4.854173 TGGTTGCCTTGAGCTATATTTGA 58.146 39.130 0.00 0.00 44.23 2.69
228 229 5.779529 ATGGTTGCCTTGAGCTATATTTG 57.220 39.130 0.00 0.00 44.23 2.32
229 230 7.062957 ACTAATGGTTGCCTTGAGCTATATTT 58.937 34.615 0.00 0.00 44.23 1.40
230 231 6.605119 ACTAATGGTTGCCTTGAGCTATATT 58.395 36.000 0.00 0.00 44.23 1.28
231 232 6.192970 ACTAATGGTTGCCTTGAGCTATAT 57.807 37.500 0.00 0.00 44.23 0.86
232 233 5.454755 GGACTAATGGTTGCCTTGAGCTATA 60.455 44.000 0.00 0.00 44.23 1.31
233 234 4.455606 GACTAATGGTTGCCTTGAGCTAT 58.544 43.478 0.00 0.00 44.23 2.97
234 235 3.370527 GGACTAATGGTTGCCTTGAGCTA 60.371 47.826 0.00 0.00 44.23 3.32
235 236 2.619074 GGACTAATGGTTGCCTTGAGCT 60.619 50.000 0.00 0.00 44.23 4.09
236 237 1.745653 GGACTAATGGTTGCCTTGAGC 59.254 52.381 0.00 0.00 44.14 4.26
237 238 3.071874 TGGACTAATGGTTGCCTTGAG 57.928 47.619 0.00 0.00 0.00 3.02
238 239 3.737559 ATGGACTAATGGTTGCCTTGA 57.262 42.857 0.00 0.00 0.00 3.02
239 240 4.780815 TCTATGGACTAATGGTTGCCTTG 58.219 43.478 0.00 0.00 0.00 3.61
240 241 5.450818 TTCTATGGACTAATGGTTGCCTT 57.549 39.130 0.00 0.00 0.00 4.35
241 242 5.450818 TTTCTATGGACTAATGGTTGCCT 57.549 39.130 0.00 0.00 0.00 4.75
242 243 6.096846 ACATTTTCTATGGACTAATGGTTGCC 59.903 38.462 13.99 0.00 32.52 4.52
243 244 7.100458 ACATTTTCTATGGACTAATGGTTGC 57.900 36.000 13.99 0.00 32.52 4.17
244 245 8.279970 TGACATTTTCTATGGACTAATGGTTG 57.720 34.615 13.99 0.00 32.52 3.77
245 246 9.125026 GATGACATTTTCTATGGACTAATGGTT 57.875 33.333 13.99 3.12 32.52 3.67
246 247 8.274322 TGATGACATTTTCTATGGACTAATGGT 58.726 33.333 13.99 4.28 32.52 3.55
247 248 8.681486 TGATGACATTTTCTATGGACTAATGG 57.319 34.615 13.99 2.06 32.52 3.16
252 253 9.685276 TGTAATTGATGACATTTTCTATGGACT 57.315 29.630 0.00 0.00 0.00 3.85
263 264 9.775854 TGTTTGGATTTTGTAATTGATGACATT 57.224 25.926 0.00 0.00 0.00 2.71
264 265 9.947433 ATGTTTGGATTTTGTAATTGATGACAT 57.053 25.926 0.00 0.00 0.00 3.06
265 266 9.205719 CATGTTTGGATTTTGTAATTGATGACA 57.794 29.630 0.00 0.00 0.00 3.58
266 267 9.421806 TCATGTTTGGATTTTGTAATTGATGAC 57.578 29.630 0.00 0.00 0.00 3.06
267 268 9.642327 CTCATGTTTGGATTTTGTAATTGATGA 57.358 29.630 0.00 0.00 0.00 2.92
268 269 8.875803 CCTCATGTTTGGATTTTGTAATTGATG 58.124 33.333 0.00 0.00 0.00 3.07
269 270 8.042515 CCCTCATGTTTGGATTTTGTAATTGAT 58.957 33.333 0.00 0.00 0.00 2.57
270 271 7.385267 CCCTCATGTTTGGATTTTGTAATTGA 58.615 34.615 0.00 0.00 0.00 2.57
271 272 6.092533 GCCCTCATGTTTGGATTTTGTAATTG 59.907 38.462 0.00 0.00 0.00 2.32
272 273 6.172630 GCCCTCATGTTTGGATTTTGTAATT 58.827 36.000 0.00 0.00 0.00 1.40
273 274 5.248020 TGCCCTCATGTTTGGATTTTGTAAT 59.752 36.000 0.00 0.00 0.00 1.89
274 275 4.590647 TGCCCTCATGTTTGGATTTTGTAA 59.409 37.500 0.00 0.00 0.00 2.41
275 276 4.021544 GTGCCCTCATGTTTGGATTTTGTA 60.022 41.667 0.00 0.00 0.00 2.41
276 277 2.971330 TGCCCTCATGTTTGGATTTTGT 59.029 40.909 0.00 0.00 0.00 2.83
277 278 3.328505 GTGCCCTCATGTTTGGATTTTG 58.671 45.455 0.00 0.00 0.00 2.44
278 279 2.302733 GGTGCCCTCATGTTTGGATTTT 59.697 45.455 0.00 0.00 0.00 1.82
279 280 1.901833 GGTGCCCTCATGTTTGGATTT 59.098 47.619 0.00 0.00 0.00 2.17
280 281 1.203162 TGGTGCCCTCATGTTTGGATT 60.203 47.619 0.00 0.00 0.00 3.01
281 282 0.409092 TGGTGCCCTCATGTTTGGAT 59.591 50.000 0.00 0.00 0.00 3.41
282 283 0.539438 GTGGTGCCCTCATGTTTGGA 60.539 55.000 0.00 0.00 0.00 3.53
283 284 0.827089 TGTGGTGCCCTCATGTTTGG 60.827 55.000 0.00 0.00 0.00 3.28
284 285 1.067425 CATGTGGTGCCCTCATGTTTG 60.067 52.381 19.74 4.96 45.14 2.93
285 286 1.259609 CATGTGGTGCCCTCATGTTT 58.740 50.000 19.74 0.00 45.14 2.83
286 287 2.965805 CATGTGGTGCCCTCATGTT 58.034 52.632 19.74 0.00 45.14 2.71
287 288 4.749323 CATGTGGTGCCCTCATGT 57.251 55.556 19.74 0.00 45.14 3.21
289 290 1.210204 AGGACATGTGGTGCCCTCAT 61.210 55.000 1.15 3.73 35.52 2.90
290 291 1.847506 AGGACATGTGGTGCCCTCA 60.848 57.895 1.15 0.00 35.52 3.86
291 292 1.377725 CAGGACATGTGGTGCCCTC 60.378 63.158 1.15 0.00 38.86 4.30
292 293 2.129555 GACAGGACATGTGGTGCCCT 62.130 60.000 1.15 0.00 42.06 5.19
293 294 1.675641 GACAGGACATGTGGTGCCC 60.676 63.158 1.15 0.00 44.17 5.36
294 295 1.073025 TGACAGGACATGTGGTGCC 59.927 57.895 1.15 0.00 44.17 5.01
295 296 0.250467 AGTGACAGGACATGTGGTGC 60.250 55.000 1.15 0.00 44.17 5.01
296 297 1.800805 GAGTGACAGGACATGTGGTG 58.199 55.000 1.15 2.34 44.17 4.17
297 298 0.318441 CGAGTGACAGGACATGTGGT 59.682 55.000 1.15 0.00 44.17 4.16
298 299 1.016130 GCGAGTGACAGGACATGTGG 61.016 60.000 1.15 0.00 44.17 4.17
299 300 0.319813 TGCGAGTGACAGGACATGTG 60.320 55.000 1.15 0.00 44.17 3.21
301 302 1.730501 AATGCGAGTGACAGGACATG 58.269 50.000 0.00 0.00 0.00 3.21
302 303 3.827008 ATAATGCGAGTGACAGGACAT 57.173 42.857 0.00 0.00 0.00 3.06
303 304 3.445805 TGTATAATGCGAGTGACAGGACA 59.554 43.478 0.00 0.00 0.00 4.02
304 305 4.041740 TGTATAATGCGAGTGACAGGAC 57.958 45.455 0.00 0.00 0.00 3.85
305 306 4.729227 TTGTATAATGCGAGTGACAGGA 57.271 40.909 0.00 0.00 0.00 3.86
306 307 5.220662 CCTTTTGTATAATGCGAGTGACAGG 60.221 44.000 0.00 0.00 0.00 4.00
307 308 5.727791 GCCTTTTGTATAATGCGAGTGACAG 60.728 44.000 0.00 0.00 0.00 3.51
308 309 4.094294 GCCTTTTGTATAATGCGAGTGACA 59.906 41.667 0.00 0.00 0.00 3.58
309 310 4.495844 GGCCTTTTGTATAATGCGAGTGAC 60.496 45.833 0.00 0.00 0.00 3.67
310 311 3.625764 GGCCTTTTGTATAATGCGAGTGA 59.374 43.478 0.00 0.00 0.00 3.41
311 312 3.376859 TGGCCTTTTGTATAATGCGAGTG 59.623 43.478 3.32 0.00 0.00 3.51
312 313 3.616219 TGGCCTTTTGTATAATGCGAGT 58.384 40.909 3.32 0.00 0.00 4.18
316 317 5.535753 ATCCTTGGCCTTTTGTATAATGC 57.464 39.130 3.32 0.00 0.00 3.56
322 323 7.122715 ACATGTTATATCCTTGGCCTTTTGTA 58.877 34.615 3.32 0.00 0.00 2.41
326 327 6.667414 TCAAACATGTTATATCCTTGGCCTTT 59.333 34.615 12.39 0.00 0.00 3.11
327 328 6.194235 TCAAACATGTTATATCCTTGGCCTT 58.806 36.000 12.39 0.00 0.00 4.35
349 350 9.431887 GTTAGGATACAGTTAGTGTTTGAATCA 57.568 33.333 0.00 0.00 40.94 2.57
380 381 3.676540 GCGTCGAACTTTTTCAAGTGAA 58.323 40.909 0.00 0.00 42.89 3.18
381 382 2.285371 CGCGTCGAACTTTTTCAAGTGA 60.285 45.455 0.00 0.00 42.89 3.41
382 383 2.026990 CGCGTCGAACTTTTTCAAGTG 58.973 47.619 0.00 0.00 42.89 3.16
396 397 2.469709 CGAAAGTTTTTAGTCGCGTCG 58.530 47.619 5.77 0.00 0.00 5.12
424 425 9.241317 CGGTTAATCTTTCGTTCTTATTAGCTA 57.759 33.333 0.00 0.00 0.00 3.32
426 427 8.123445 TCGGTTAATCTTTCGTTCTTATTAGC 57.877 34.615 0.00 0.00 0.00 3.09
427 428 8.267367 GCTCGGTTAATCTTTCGTTCTTATTAG 58.733 37.037 0.00 0.00 0.00 1.73
428 429 7.760794 TGCTCGGTTAATCTTTCGTTCTTATTA 59.239 33.333 0.00 0.00 0.00 0.98
457 458 1.790623 GCAACTAGTACGTGGTGTGTG 59.209 52.381 0.00 0.00 0.00 3.82
465 466 4.214758 GGTTGGATTTTGCAACTAGTACGT 59.785 41.667 0.00 0.00 46.11 3.57
570 573 3.714798 TGATTGTTAGGTGGGGGAGATAC 59.285 47.826 0.00 0.00 0.00 2.24
582 585 3.567164 GCCACCTCATCATGATTGTTAGG 59.433 47.826 5.16 12.55 0.00 2.69
592 595 2.860009 CAAGCTATGCCACCTCATCAT 58.140 47.619 0.00 0.00 0.00 2.45
593 596 2.336945 CAAGCTATGCCACCTCATCA 57.663 50.000 0.00 0.00 0.00 3.07
630 634 1.152777 CATGATGGGCCCGGCTAAA 60.153 57.895 19.37 0.00 0.00 1.85
642 650 0.677731 AACGGGGTGAGTGCATGATG 60.678 55.000 0.00 0.00 0.00 3.07
644 652 1.003839 GAACGGGGTGAGTGCATGA 60.004 57.895 0.00 0.00 0.00 3.07
690 698 9.853555 TCAATGTCGCTTTCACAATTAATTATT 57.146 25.926 0.00 0.00 0.00 1.40
714 722 2.291365 AGAGCGCATGCAATTATGTCA 58.709 42.857 19.57 0.00 46.23 3.58
856 928 3.785189 GACTCGGGCGTGTGTGTGT 62.785 63.158 0.00 0.00 0.00 3.72
858 931 4.640855 CGACTCGGGCGTGTGTGT 62.641 66.667 0.00 0.00 0.00 3.72
863 936 3.966026 GAGGTTCGACTCGGGCGTG 62.966 68.421 0.00 0.00 0.00 5.34
864 937 3.745803 GAGGTTCGACTCGGGCGT 61.746 66.667 0.00 0.00 0.00 5.68
865 938 4.493747 GGAGGTTCGACTCGGGCG 62.494 72.222 0.00 0.00 38.39 6.13
907 990 1.345176 GATGCTTTTCGTCTCCGCG 59.655 57.895 0.00 0.00 0.00 6.46
908 991 1.716172 GGATGCTTTTCGTCTCCGC 59.284 57.895 0.00 0.00 0.00 5.54
945 1028 3.695606 GTGGACCGCTGGCAGAGA 61.696 66.667 20.86 0.00 0.00 3.10
989 1076 2.148558 TTTGGTCGCGGATTTTGGCC 62.149 55.000 6.13 0.00 0.00 5.36
990 1077 1.006825 GTTTGGTCGCGGATTTTGGC 61.007 55.000 6.13 0.00 0.00 4.52
991 1078 0.596082 AGTTTGGTCGCGGATTTTGG 59.404 50.000 6.13 0.00 0.00 3.28
992 1079 1.685302 CAGTTTGGTCGCGGATTTTG 58.315 50.000 6.13 0.00 0.00 2.44
1009 1096 2.044551 GGGGAGAAGGCTTGGCAG 60.045 66.667 3.46 0.00 0.00 4.85
1052 1139 0.253207 GGGAGAAGGAAGGAAGGGGA 60.253 60.000 0.00 0.00 0.00 4.81
1448 1539 6.672147 AGACGCGTAAACTAGAAGTCTTTAA 58.328 36.000 13.97 0.00 34.27 1.52
1449 1540 6.148480 AGAGACGCGTAAACTAGAAGTCTTTA 59.852 38.462 13.97 0.00 37.57 1.85
1452 1543 4.002316 AGAGACGCGTAAACTAGAAGTCT 58.998 43.478 13.97 0.00 39.78 3.24
1453 1544 4.090034 CAGAGACGCGTAAACTAGAAGTC 58.910 47.826 13.97 0.00 0.00 3.01
1455 1546 2.847133 GCAGAGACGCGTAAACTAGAAG 59.153 50.000 13.97 1.39 0.00 2.85
1456 1547 2.227149 TGCAGAGACGCGTAAACTAGAA 59.773 45.455 13.97 0.00 33.35 2.10
1457 1548 1.808343 TGCAGAGACGCGTAAACTAGA 59.192 47.619 13.97 0.00 33.35 2.43
1458 1549 2.257974 TGCAGAGACGCGTAAACTAG 57.742 50.000 13.97 2.82 33.35 2.57
1459 1550 2.933495 ATGCAGAGACGCGTAAACTA 57.067 45.000 13.97 0.00 33.35 2.24
1460 1551 1.993370 GAATGCAGAGACGCGTAAACT 59.007 47.619 13.97 4.82 33.35 2.66
1461 1552 1.993370 AGAATGCAGAGACGCGTAAAC 59.007 47.619 13.97 6.72 33.35 2.01
1462 1553 1.992667 CAGAATGCAGAGACGCGTAAA 59.007 47.619 13.97 0.00 33.35 2.01
1529 1620 0.603707 TCTGGCGAGGAAACTGCTTG 60.604 55.000 0.00 0.00 44.43 4.01
1570 1661 3.689161 CAGTCGGCATTAACAGATTCCAA 59.311 43.478 0.00 0.00 0.00 3.53
1572 1663 3.531538 TCAGTCGGCATTAACAGATTCC 58.468 45.455 0.00 0.00 0.00 3.01
1574 1665 4.759693 TGTTTCAGTCGGCATTAACAGATT 59.240 37.500 0.00 0.00 0.00 2.40
1575 1666 4.323417 TGTTTCAGTCGGCATTAACAGAT 58.677 39.130 0.00 0.00 0.00 2.90
1576 1667 3.734463 TGTTTCAGTCGGCATTAACAGA 58.266 40.909 0.00 0.00 0.00 3.41
1577 1668 3.745975 TCTGTTTCAGTCGGCATTAACAG 59.254 43.478 16.94 16.94 42.18 3.16
1578 1669 3.734463 TCTGTTTCAGTCGGCATTAACA 58.266 40.909 0.00 0.00 32.61 2.41
1594 1686 4.371624 TCAATCACATTGGGACTCTGTT 57.628 40.909 0.00 0.00 40.61 3.16
1625 1717 2.943033 GGTCACGCCACTAGCAATATTT 59.057 45.455 0.00 0.00 44.04 1.40
1674 1769 4.272504 TCGCAACTAAAACAGAGTTTGGAG 59.727 41.667 0.00 0.59 34.90 3.86
1706 1801 3.620488 TGATATCAGCAAACCAGGAACC 58.380 45.455 0.00 0.00 0.00 3.62
1754 1849 7.559897 TCATAGTGTGTCATCTACTGGTTCATA 59.440 37.037 0.00 0.00 0.00 2.15
1755 1850 6.381133 TCATAGTGTGTCATCTACTGGTTCAT 59.619 38.462 0.00 0.00 0.00 2.57
1756 1851 5.714806 TCATAGTGTGTCATCTACTGGTTCA 59.285 40.000 0.00 0.00 0.00 3.18
1757 1852 6.037098 GTCATAGTGTGTCATCTACTGGTTC 58.963 44.000 0.00 0.00 0.00 3.62
1759 1854 5.016831 TGTCATAGTGTGTCATCTACTGGT 58.983 41.667 0.00 0.00 0.00 4.00
1760 1855 5.582689 TGTCATAGTGTGTCATCTACTGG 57.417 43.478 0.00 0.00 0.00 4.00
1761 1856 5.461407 GCATGTCATAGTGTGTCATCTACTG 59.539 44.000 0.00 0.00 34.94 2.74
1762 1857 5.127682 TGCATGTCATAGTGTGTCATCTACT 59.872 40.000 0.00 0.00 34.94 2.57
1763 1858 5.233050 GTGCATGTCATAGTGTGTCATCTAC 59.767 44.000 0.00 0.00 34.94 2.59
1764 1859 5.105392 TGTGCATGTCATAGTGTGTCATCTA 60.105 40.000 0.00 0.00 34.94 1.98
1765 1860 4.186926 GTGCATGTCATAGTGTGTCATCT 58.813 43.478 0.00 0.00 34.94 2.90
1766 1861 3.934579 TGTGCATGTCATAGTGTGTCATC 59.065 43.478 0.00 0.00 34.94 2.92
1767 1862 3.937079 CTGTGCATGTCATAGTGTGTCAT 59.063 43.478 0.00 0.00 37.11 3.06
1768 1863 3.328505 CTGTGCATGTCATAGTGTGTCA 58.671 45.455 0.00 0.00 0.00 3.58
1769 1864 2.094894 GCTGTGCATGTCATAGTGTGTC 59.905 50.000 12.76 0.00 36.43 3.67
1770 1865 2.079158 GCTGTGCATGTCATAGTGTGT 58.921 47.619 12.76 0.00 36.43 3.72
1771 1866 2.353323 AGCTGTGCATGTCATAGTGTG 58.647 47.619 12.76 0.00 36.43 3.82
1780 1875 0.610232 GGAAGGGAAGCTGTGCATGT 60.610 55.000 0.00 0.00 0.00 3.21
1784 1879 0.250901 TTCAGGAAGGGAAGCTGTGC 60.251 55.000 0.00 0.00 0.00 4.57
1785 1880 2.089980 CATTCAGGAAGGGAAGCTGTG 58.910 52.381 0.00 0.00 0.00 3.66
1786 1881 1.988107 TCATTCAGGAAGGGAAGCTGT 59.012 47.619 0.00 0.00 0.00 4.40
1787 1882 2.795231 TCATTCAGGAAGGGAAGCTG 57.205 50.000 0.00 0.00 0.00 4.24
1872 1968 0.673985 CCATGCTTGATGCCCTCATG 59.326 55.000 0.22 0.00 42.00 3.07
1917 2013 2.325484 TGGTAACAGACAGGAGCTGAA 58.675 47.619 0.00 0.00 46.17 3.02
2014 2118 9.195411 CAGACAATGCAAAATACAAGTACAAAT 57.805 29.630 0.00 0.00 0.00 2.32
2050 2154 1.522092 CAGCTGGCTAATCCGGACA 59.478 57.895 6.12 0.00 44.37 4.02
2051 2155 1.889573 GCAGCTGGCTAATCCGGAC 60.890 63.158 17.12 0.00 44.37 4.79
2061 2165 2.159043 TCTACATTCTAGTGCAGCTGGC 60.159 50.000 17.12 8.54 45.13 4.85
2138 2243 8.780249 GTCTTCTGTAATAGCCTAAAACAACAA 58.220 33.333 0.00 0.00 0.00 2.83
2544 2650 2.292267 CAATGGCCACAGTCCATAGTC 58.708 52.381 8.16 0.00 43.13 2.59
2744 2853 1.136500 GGTGTTAGGGGTAAGCGAGAG 59.864 57.143 0.00 0.00 0.00 3.20
2745 2854 1.188863 GGTGTTAGGGGTAAGCGAGA 58.811 55.000 0.00 0.00 0.00 4.04
2746 2855 1.134788 CAGGTGTTAGGGGTAAGCGAG 60.135 57.143 0.00 0.00 0.00 5.03
2747 2856 0.899720 CAGGTGTTAGGGGTAAGCGA 59.100 55.000 0.00 0.00 0.00 4.93
2748 2857 0.899720 TCAGGTGTTAGGGGTAAGCG 59.100 55.000 0.00 0.00 0.00 4.68
2788 2903 0.766131 TTTGAAGTGCCCCGGTAAGA 59.234 50.000 0.00 0.00 0.00 2.10
2850 2965 1.276421 ACGTATCTGCTTCTTGCCACT 59.724 47.619 0.00 0.00 42.00 4.00
2852 2967 2.076100 CAACGTATCTGCTTCTTGCCA 58.924 47.619 0.00 0.00 42.00 4.92
3083 3198 0.683973 AGAAGCTGACACCACAGAGG 59.316 55.000 0.00 0.00 45.67 3.69
3134 3249 2.224523 CCTCCATATGTTACACGGGCAT 60.225 50.000 1.24 0.00 0.00 4.40
3145 3260 1.915489 TGTTCCACTGCCTCCATATGT 59.085 47.619 1.24 0.00 0.00 2.29
3154 3269 0.678048 GATCCTGGTGTTCCACTGCC 60.678 60.000 0.00 0.00 39.03 4.85
3203 3318 3.181480 GGCAGCTCTTGGTGTTTTTAACA 60.181 43.478 0.00 0.00 43.05 2.41
3330 3445 1.136252 CGAGCTCACATGTTTTCACGG 60.136 52.381 15.40 0.00 0.00 4.94
3386 3501 6.735130 GGATGAAAATTATCCCAAAGGTACG 58.265 40.000 0.00 0.00 38.51 3.67
3541 3657 0.306840 CACATAGCCAGCTGCATTCG 59.693 55.000 8.66 0.00 44.83 3.34
3724 3840 2.597510 GGCCCCAGCTTTTCGTGT 60.598 61.111 0.00 0.00 39.73 4.49
4012 4128 1.373497 CAGCGCCAGGATATCCGTC 60.373 63.158 16.21 8.26 42.08 4.79
4210 4326 2.149578 CCAAGTGAAGAAGCCTGTCAG 58.850 52.381 0.00 0.00 0.00 3.51
4236 4355 3.234349 ATGTCCGCCTGGAGATGG 58.766 61.111 0.00 0.00 46.01 3.51
4243 4362 0.740868 CCACACTGTATGTCCGCCTG 60.741 60.000 0.00 0.00 40.64 4.85
4244 4363 1.596934 CCACACTGTATGTCCGCCT 59.403 57.895 0.00 0.00 40.64 5.52
4253 4375 0.467804 TCAGTTGCTGCCACACTGTA 59.532 50.000 17.91 7.32 0.00 2.74
4256 4378 0.109153 TCATCAGTTGCTGCCACACT 59.891 50.000 6.63 0.00 0.00 3.55
4409 4559 0.909623 ACTTACATTGGGACGGAGGG 59.090 55.000 0.00 0.00 0.00 4.30
4410 4560 1.553248 TGACTTACATTGGGACGGAGG 59.447 52.381 0.00 0.00 0.00 4.30
4411 4561 3.543680 ATGACTTACATTGGGACGGAG 57.456 47.619 0.00 0.00 35.45 4.63
4412 4562 3.992943 AATGACTTACATTGGGACGGA 57.007 42.857 0.00 0.00 45.99 4.69
4413 4563 5.385509 AAAAATGACTTACATTGGGACGG 57.614 39.130 0.00 0.00 46.90 4.79
4455 4605 4.260866 CGTCCCACAATGTAAGACGTTTTT 60.261 41.667 21.67 0.00 43.89 1.94
4456 4606 3.249080 CGTCCCACAATGTAAGACGTTTT 59.751 43.478 21.67 0.00 43.89 2.43
4457 4607 2.803956 CGTCCCACAATGTAAGACGTTT 59.196 45.455 21.67 0.00 43.89 3.60
4458 4608 2.409975 CGTCCCACAATGTAAGACGTT 58.590 47.619 21.67 0.00 43.89 3.99
4459 4609 1.337447 CCGTCCCACAATGTAAGACGT 60.337 52.381 25.28 0.00 46.62 4.34
4461 4611 2.618053 CTCCGTCCCACAATGTAAGAC 58.382 52.381 5.24 5.24 0.00 3.01
4462 4612 1.553248 CCTCCGTCCCACAATGTAAGA 59.447 52.381 0.00 0.00 0.00 2.10
4463 4613 1.406887 CCCTCCGTCCCACAATGTAAG 60.407 57.143 0.00 0.00 0.00 2.34
4464 4614 0.616371 CCCTCCGTCCCACAATGTAA 59.384 55.000 0.00 0.00 0.00 2.41
4465 4615 0.252330 TCCCTCCGTCCCACAATGTA 60.252 55.000 0.00 0.00 0.00 2.29
4466 4616 1.537889 TCCCTCCGTCCCACAATGT 60.538 57.895 0.00 0.00 0.00 2.71
4467 4617 1.221840 CTCCCTCCGTCCCACAATG 59.778 63.158 0.00 0.00 0.00 2.82
4468 4618 0.042131 TACTCCCTCCGTCCCACAAT 59.958 55.000 0.00 0.00 0.00 2.71
4469 4619 0.613853 CTACTCCCTCCGTCCCACAA 60.614 60.000 0.00 0.00 0.00 3.33
4470 4620 1.000019 CTACTCCCTCCGTCCCACA 60.000 63.158 0.00 0.00 0.00 4.17
4471 4621 0.614134 AACTACTCCCTCCGTCCCAC 60.614 60.000 0.00 0.00 0.00 4.61
4472 4622 0.115745 AAACTACTCCCTCCGTCCCA 59.884 55.000 0.00 0.00 0.00 4.37
4473 4623 0.535797 CAAACTACTCCCTCCGTCCC 59.464 60.000 0.00 0.00 0.00 4.46
4474 4624 0.108281 GCAAACTACTCCCTCCGTCC 60.108 60.000 0.00 0.00 0.00 4.79
4475 4625 0.606604 TGCAAACTACTCCCTCCGTC 59.393 55.000 0.00 0.00 0.00 4.79
4476 4626 1.002087 CTTGCAAACTACTCCCTCCGT 59.998 52.381 0.00 0.00 0.00 4.69
4477 4627 1.002087 ACTTGCAAACTACTCCCTCCG 59.998 52.381 0.00 0.00 0.00 4.63
4478 4628 2.038557 TCACTTGCAAACTACTCCCTCC 59.961 50.000 0.00 0.00 0.00 4.30
4479 4629 3.402628 TCACTTGCAAACTACTCCCTC 57.597 47.619 0.00 0.00 0.00 4.30
4480 4630 3.744660 CTTCACTTGCAAACTACTCCCT 58.255 45.455 0.00 0.00 0.00 4.20
4481 4631 2.226674 GCTTCACTTGCAAACTACTCCC 59.773 50.000 0.00 0.00 0.00 4.30
4482 4632 2.878406 TGCTTCACTTGCAAACTACTCC 59.122 45.455 0.00 0.00 37.51 3.85
4483 4633 4.023707 ACATGCTTCACTTGCAAACTACTC 60.024 41.667 0.00 0.00 44.01 2.59
4484 4634 3.885297 ACATGCTTCACTTGCAAACTACT 59.115 39.130 0.00 0.00 44.01 2.57
4485 4635 4.228912 ACATGCTTCACTTGCAAACTAC 57.771 40.909 0.00 0.00 44.01 2.73
4504 4654 1.855295 TAGCTGGATGAACCCGTACA 58.145 50.000 0.00 0.00 38.00 2.90
4525 4679 2.030185 ACGCTTAGTACAGACACCACAG 60.030 50.000 0.00 0.00 0.00 3.66
4661 4847 7.441458 ACTGTTGACTTCAGACAAACCTTATAC 59.559 37.037 0.00 0.00 36.81 1.47
4749 4935 9.820725 AGATATCAGCATCTTCAATATTAGAGC 57.179 33.333 5.32 0.00 30.93 4.09
4853 5039 7.949006 ACTCCCAAAGTCCTCGTATATATACTT 59.051 37.037 18.46 6.01 30.02 2.24
4873 5059 4.163268 TCATTTATCCATGAACGACTCCCA 59.837 41.667 0.00 0.00 29.81 4.37
4876 5062 8.184192 ACAAAATCATTTATCCATGAACGACTC 58.816 33.333 0.00 0.00 36.74 3.36
4877 5063 8.055279 ACAAAATCATTTATCCATGAACGACT 57.945 30.769 0.00 0.00 36.74 4.18
4907 5093 4.114073 ACACACACATTTTCTGCATGTTG 58.886 39.130 0.00 0.00 32.25 3.33
4953 5141 0.743688 TTGAACACACACATGCCACC 59.256 50.000 0.00 0.00 0.00 4.61
4975 5163 8.849490 CACATAGCACAAAACATTACATACAAC 58.151 33.333 0.00 0.00 0.00 3.32
5074 5263 5.407387 GGCACTCGAATGAACTACACTTAAA 59.593 40.000 0.00 0.00 0.00 1.52
5083 5272 6.407202 ACTTAATTAGGCACTCGAATGAACT 58.593 36.000 0.00 0.00 41.75 3.01
5119 5308 5.334724 ACGGAGGTAGTACAAAATAGTGG 57.665 43.478 2.06 0.00 0.00 4.00
5131 5320 9.322773 GCTTTTATATTTTTCTACGGAGGTAGT 57.677 33.333 0.00 0.00 45.22 2.73
5132 5321 8.485591 CGCTTTTATATTTTTCTACGGAGGTAG 58.514 37.037 0.00 0.00 46.16 3.18
5133 5322 7.981225 ACGCTTTTATATTTTTCTACGGAGGTA 59.019 33.333 0.00 0.00 0.00 3.08
5134 5323 6.820152 ACGCTTTTATATTTTTCTACGGAGGT 59.180 34.615 0.00 0.00 0.00 3.85
5135 5324 7.242914 ACGCTTTTATATTTTTCTACGGAGG 57.757 36.000 0.00 0.00 0.00 4.30
5155 5344 9.988350 CATCATTAAAGTAGTGATTTAAACGCT 57.012 29.630 0.00 0.00 36.13 5.07
5156 5345 9.769093 ACATCATTAAAGTAGTGATTTAAACGC 57.231 29.630 0.00 0.00 36.13 4.84
5162 5351 9.769093 GCGTTTACATCATTAAAGTAGTGATTT 57.231 29.630 0.00 0.00 33.51 2.17
5163 5352 9.162764 AGCGTTTACATCATTAAAGTAGTGATT 57.837 29.630 0.00 0.00 33.51 2.57
5164 5353 8.718102 AGCGTTTACATCATTAAAGTAGTGAT 57.282 30.769 0.00 0.00 35.79 3.06
5165 5354 8.033038 AGAGCGTTTACATCATTAAAGTAGTGA 58.967 33.333 0.00 0.00 0.00 3.41
5166 5355 8.186178 AGAGCGTTTACATCATTAAAGTAGTG 57.814 34.615 0.00 0.00 0.00 2.74
5167 5356 8.773404 AAGAGCGTTTACATCATTAAAGTAGT 57.227 30.769 0.00 0.00 0.00 2.73
5183 5372 9.099454 CCTCTGTAAAGAAATATAAGAGCGTTT 57.901 33.333 0.00 0.00 0.00 3.60
5184 5373 7.711339 CCCTCTGTAAAGAAATATAAGAGCGTT 59.289 37.037 0.00 0.00 0.00 4.84
5185 5374 7.069578 TCCCTCTGTAAAGAAATATAAGAGCGT 59.930 37.037 0.00 0.00 0.00 5.07
5186 5375 7.434492 TCCCTCTGTAAAGAAATATAAGAGCG 58.566 38.462 0.00 0.00 0.00 5.03
5187 5376 8.425703 ACTCCCTCTGTAAAGAAATATAAGAGC 58.574 37.037 0.00 0.00 0.00 4.09
5200 5389 9.901172 GGATTTAAAAGATACTCCCTCTGTAAA 57.099 33.333 0.00 0.00 0.00 2.01
5201 5390 8.491958 GGGATTTAAAAGATACTCCCTCTGTAA 58.508 37.037 13.05 0.00 39.42 2.41
5202 5391 7.626084 TGGGATTTAAAAGATACTCCCTCTGTA 59.374 37.037 18.69 1.14 42.38 2.74
5203 5392 6.447084 TGGGATTTAAAAGATACTCCCTCTGT 59.553 38.462 18.69 0.00 42.38 3.41
5204 5393 6.900194 TGGGATTTAAAAGATACTCCCTCTG 58.100 40.000 18.69 0.00 42.38 3.35
5205 5394 7.525158 TTGGGATTTAAAAGATACTCCCTCT 57.475 36.000 18.69 0.00 42.38 3.69
5206 5395 8.589701 TTTTGGGATTTAAAAGATACTCCCTC 57.410 34.615 18.69 0.00 42.38 4.30
5207 5396 8.981659 CATTTTGGGATTTAAAAGATACTCCCT 58.018 33.333 18.69 1.44 42.38 4.20
5208 5397 8.758829 ACATTTTGGGATTTAAAAGATACTCCC 58.241 33.333 13.33 13.33 42.27 4.30
5281 5471 1.152830 TGGAAGTTGGTCCAAGCCC 59.847 57.895 3.96 7.19 44.91 5.19
5304 5494 0.685660 AGGAAGTCCGTGGGAGTTTC 59.314 55.000 6.21 4.48 44.44 2.78
5314 5504 4.110482 CGGTACTAATGAAAGGAAGTCCG 58.890 47.826 0.00 0.00 42.08 4.79
5317 5507 4.020485 ACAGCGGTACTAATGAAAGGAAGT 60.020 41.667 0.00 0.00 0.00 3.01
5320 5510 4.546829 AACAGCGGTACTAATGAAAGGA 57.453 40.909 0.00 0.00 0.00 3.36
5323 5513 7.031372 CACTAGTAACAGCGGTACTAATGAAA 58.969 38.462 13.35 0.00 28.40 2.69
5330 5520 2.417933 CGTCACTAGTAACAGCGGTACT 59.582 50.000 10.37 10.37 0.00 2.73
5337 5527 4.357018 TGATGCTCGTCACTAGTAACAG 57.643 45.455 0.00 0.00 0.00 3.16
5351 5541 6.580041 CAGTAACAACTTTTCACATGATGCTC 59.420 38.462 0.00 0.00 0.00 4.26
5374 5564 0.387878 GACGACTGGACTGCAGTCAG 60.388 60.000 39.71 33.73 46.81 3.51
5381 5571 3.982829 TCGAGGACGACTGGACTG 58.017 61.111 0.00 0.00 43.81 3.51


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.