Multiple sequence alignment - TraesCS4B01G071600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G071600 chr4B 100.000 4571 0 0 1 4571 66161498 66156928 0.000000e+00 8442
1 TraesCS4B01G071600 chr4B 88.265 3008 252 43 958 3916 65988065 65985110 0.000000e+00 3506
2 TraesCS4B01G071600 chr4B 83.609 665 72 21 3224 3865 65982141 65981491 1.420000e-164 590
3 TraesCS4B01G071600 chr4B 91.176 306 26 1 2721 3025 65982760 65982455 9.150000e-112 414
4 TraesCS4B01G071600 chr4B 78.700 277 35 14 3527 3786 65979081 65978812 3.660000e-36 163
5 TraesCS4B01G071600 chr4A 87.782 3151 278 49 817 3909 553405903 553409004 0.000000e+00 3587
6 TraesCS4B01G071600 chr4A 98.901 819 8 1 1 818 722790235 722791053 0.000000e+00 1461
7 TraesCS4B01G071600 chr4A 91.667 96 7 1 3437 3531 553411484 553411579 1.030000e-26 132
8 TraesCS4B01G071600 chr4D 87.398 3071 268 50 912 3909 45667502 45664478 0.000000e+00 3417
9 TraesCS4B01G071600 chr4D 89.189 148 13 3 831 977 45667626 45667481 1.010000e-41 182
10 TraesCS4B01G071600 chr5A 98.657 819 10 1 1 818 502923589 502922771 0.000000e+00 1450
11 TraesCS4B01G071600 chr5A 98.542 823 9 2 1 820 678223563 678224385 0.000000e+00 1450
12 TraesCS4B01G071600 chr1B 98.537 820 11 1 1 819 364818149 364818968 0.000000e+00 1447
13 TraesCS4B01G071600 chr1B 97.573 824 18 2 1 822 631250991 631250168 0.000000e+00 1410
14 TraesCS4B01G071600 chr1B 96.840 633 13 5 3945 4571 658461024 658461655 0.000000e+00 1051
15 TraesCS4B01G071600 chr2B 98.168 819 14 1 1 818 680807308 680806490 0.000000e+00 1428
16 TraesCS4B01G071600 chr1A 93.357 828 50 5 1 824 588590911 588590085 0.000000e+00 1219
17 TraesCS4B01G071600 chr3D 91.495 823 63 7 1 818 603996141 603996961 0.000000e+00 1125
18 TraesCS4B01G071600 chr3D 92.068 643 42 7 3927 4565 506167953 506168590 0.000000e+00 896
19 TraesCS4B01G071600 chr5B 96.615 650 14 6 3927 4571 72249039 72249685 0.000000e+00 1072
20 TraesCS4B01G071600 chr7D 90.726 744 60 9 1 738 109580701 109581441 0.000000e+00 983
21 TraesCS4B01G071600 chr7D 93.012 644 37 7 3926 4565 23560853 23560214 0.000000e+00 933
22 TraesCS4B01G071600 chr6D 93.313 643 33 5 3927 4565 422577245 422576609 0.000000e+00 941
23 TraesCS4B01G071600 chr6D 92.623 610 36 7 3959 4565 24387311 24386708 0.000000e+00 869
24 TraesCS4B01G071600 chr6D 92.000 625 37 9 3946 4565 100370382 100370998 0.000000e+00 865
25 TraesCS4B01G071600 chr3B 92.044 641 41 6 3927 4563 732864692 732864058 0.000000e+00 893
26 TraesCS4B01G071600 chr3B 91.149 644 48 7 3926 4563 736579130 736578490 0.000000e+00 865


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G071600 chr4B 66156928 66161498 4570 True 8442.00 8442 100.0000 1 4571 1 chr4B.!!$R1 4570
1 TraesCS4B01G071600 chr4B 65978812 65988065 9253 True 1168.25 3506 85.4375 958 3916 4 chr4B.!!$R2 2958
2 TraesCS4B01G071600 chr4A 553405903 553411579 5676 False 1859.50 3587 89.7245 817 3909 2 chr4A.!!$F2 3092
3 TraesCS4B01G071600 chr4A 722790235 722791053 818 False 1461.00 1461 98.9010 1 818 1 chr4A.!!$F1 817
4 TraesCS4B01G071600 chr4D 45664478 45667626 3148 True 1799.50 3417 88.2935 831 3909 2 chr4D.!!$R1 3078
5 TraesCS4B01G071600 chr5A 502922771 502923589 818 True 1450.00 1450 98.6570 1 818 1 chr5A.!!$R1 817
6 TraesCS4B01G071600 chr5A 678223563 678224385 822 False 1450.00 1450 98.5420 1 820 1 chr5A.!!$F1 819
7 TraesCS4B01G071600 chr1B 364818149 364818968 819 False 1447.00 1447 98.5370 1 819 1 chr1B.!!$F1 818
8 TraesCS4B01G071600 chr1B 631250168 631250991 823 True 1410.00 1410 97.5730 1 822 1 chr1B.!!$R1 821
9 TraesCS4B01G071600 chr1B 658461024 658461655 631 False 1051.00 1051 96.8400 3945 4571 1 chr1B.!!$F2 626
10 TraesCS4B01G071600 chr2B 680806490 680807308 818 True 1428.00 1428 98.1680 1 818 1 chr2B.!!$R1 817
11 TraesCS4B01G071600 chr1A 588590085 588590911 826 True 1219.00 1219 93.3570 1 824 1 chr1A.!!$R1 823
12 TraesCS4B01G071600 chr3D 603996141 603996961 820 False 1125.00 1125 91.4950 1 818 1 chr3D.!!$F2 817
13 TraesCS4B01G071600 chr3D 506167953 506168590 637 False 896.00 896 92.0680 3927 4565 1 chr3D.!!$F1 638
14 TraesCS4B01G071600 chr5B 72249039 72249685 646 False 1072.00 1072 96.6150 3927 4571 1 chr5B.!!$F1 644
15 TraesCS4B01G071600 chr7D 109580701 109581441 740 False 983.00 983 90.7260 1 738 1 chr7D.!!$F1 737
16 TraesCS4B01G071600 chr7D 23560214 23560853 639 True 933.00 933 93.0120 3926 4565 1 chr7D.!!$R1 639
17 TraesCS4B01G071600 chr6D 422576609 422577245 636 True 941.00 941 93.3130 3927 4565 1 chr6D.!!$R2 638
18 TraesCS4B01G071600 chr6D 24386708 24387311 603 True 869.00 869 92.6230 3959 4565 1 chr6D.!!$R1 606
19 TraesCS4B01G071600 chr6D 100370382 100370998 616 False 865.00 865 92.0000 3946 4565 1 chr6D.!!$F1 619
20 TraesCS4B01G071600 chr3B 732864058 732864692 634 True 893.00 893 92.0440 3927 4563 1 chr3B.!!$R1 636
21 TraesCS4B01G071600 chr3B 736578490 736579130 640 True 865.00 865 91.1490 3926 4563 1 chr3B.!!$R2 637

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
866 876 0.389391 AGTGTAGACAAGTGTGCGCT 59.611 50.0 9.73 0.0 0.00 5.92 F
2226 2303 0.035056 AACTGCAAGATCCTTCCCCG 60.035 55.0 0.00 0.0 37.43 5.73 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2453 2531 0.324275 CCACCCCACCCCTAATGTTG 60.324 60.0 0.0 0.0 0.0 3.33 R
3771 7564 0.107831 TGACAGAGAAAACCCACCCG 59.892 55.0 0.0 0.0 0.0 5.28 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
751 761 8.008513 ACCGAGTTACATGAGATAAACATACT 57.991 34.615 0.00 0.00 0.00 2.12
799 809 7.049133 ACGGTTTATACTTGCACCATAATACA 58.951 34.615 0.00 0.00 0.00 2.29
826 836 4.468510 ACAAGTATTCTAACATCCCGGACA 59.531 41.667 0.73 0.00 0.00 4.02
828 838 5.888982 AGTATTCTAACATCCCGGACATT 57.111 39.130 0.73 0.00 0.00 2.71
836 846 3.023832 ACATCCCGGACATTGGAATTTC 58.976 45.455 0.73 0.00 33.54 2.17
840 850 2.481795 CCCGGACATTGGAATTTCATGC 60.482 50.000 0.73 0.00 0.00 4.06
841 851 2.166050 CCGGACATTGGAATTTCATGCA 59.834 45.455 0.00 0.00 0.00 3.96
848 858 5.929992 ACATTGGAATTTCATGCAAGTTGAG 59.070 36.000 7.16 0.00 34.01 3.02
850 860 4.873817 TGGAATTTCATGCAAGTTGAGTG 58.126 39.130 7.16 4.35 0.00 3.51
852 862 5.534278 TGGAATTTCATGCAAGTTGAGTGTA 59.466 36.000 7.16 0.00 0.00 2.90
858 868 4.751600 TCATGCAAGTTGAGTGTAGACAAG 59.248 41.667 7.16 0.00 0.00 3.16
859 869 4.137116 TGCAAGTTGAGTGTAGACAAGT 57.863 40.909 7.16 0.00 0.00 3.16
860 870 3.871006 TGCAAGTTGAGTGTAGACAAGTG 59.129 43.478 7.16 0.00 31.33 3.16
861 871 3.871594 GCAAGTTGAGTGTAGACAAGTGT 59.128 43.478 7.16 0.00 31.33 3.55
862 872 4.260375 GCAAGTTGAGTGTAGACAAGTGTG 60.260 45.833 7.16 0.00 31.33 3.82
863 873 3.458189 AGTTGAGTGTAGACAAGTGTGC 58.542 45.455 0.00 0.00 0.00 4.57
864 874 2.134201 TGAGTGTAGACAAGTGTGCG 57.866 50.000 0.00 0.00 0.00 5.34
865 875 0.784778 GAGTGTAGACAAGTGTGCGC 59.215 55.000 0.00 0.00 0.00 6.09
866 876 0.389391 AGTGTAGACAAGTGTGCGCT 59.611 50.000 9.73 0.00 0.00 5.92
867 877 1.611977 AGTGTAGACAAGTGTGCGCTA 59.388 47.619 9.73 0.00 0.00 4.26
876 889 1.429463 AGTGTGCGCTAGTTACTTGC 58.571 50.000 9.73 8.65 0.00 4.01
890 903 6.031751 AGTTACTTGCCAAAACTTGTTTGA 57.968 33.333 0.00 0.00 29.25 2.69
898 911 3.065371 CCAAAACTTGTTTGAGAGACGCT 59.935 43.478 0.00 0.00 0.00 5.07
948 1003 6.399639 TGTCATTCCTTTTACCCAAGTTTC 57.600 37.500 0.00 0.00 0.00 2.78
950 1005 6.609616 TGTCATTCCTTTTACCCAAGTTTCTT 59.390 34.615 0.00 0.00 0.00 2.52
1008 1064 2.567169 TCCACTTGTTCTCATGGACGAT 59.433 45.455 0.00 0.00 36.30 3.73
1012 1068 4.033358 CACTTGTTCTCATGGACGATAAGC 59.967 45.833 0.00 0.00 0.00 3.09
1106 1162 9.258826 CTCCAGCTAAATCTCATATGCATATAC 57.741 37.037 18.70 1.46 0.00 1.47
1129 1190 2.613595 CTCAGTGTGTTTGCTGCTTACA 59.386 45.455 0.00 2.15 33.09 2.41
1176 1237 0.815095 AGGCCGGGCTTAAATTTTCG 59.185 50.000 27.45 0.00 0.00 3.46
1206 1267 4.022589 GTGCCTACTAAGAAAACCCCAAAC 60.023 45.833 0.00 0.00 0.00 2.93
1298 1360 1.722011 TTAAAGTAGGCGCAGTGCTC 58.278 50.000 14.33 4.75 45.43 4.26
1357 1424 1.226547 GAGGAGAGCGAGCTTGACG 60.227 63.158 4.70 0.00 0.00 4.35
1424 1492 5.171476 ACTTGTATGTCTGAGTCCGATTTG 58.829 41.667 0.00 0.00 0.00 2.32
1434 1502 1.820519 AGTCCGATTTGTACGTGCCTA 59.179 47.619 0.00 0.00 0.00 3.93
1564 1635 7.791029 TGCCTCACAATATCTACTGTATTTCA 58.209 34.615 0.00 0.00 0.00 2.69
1580 1651 6.798482 TGTATTTCATGTTTGATCCTGCATC 58.202 36.000 0.00 0.00 0.00 3.91
1606 1677 6.825721 CACTAGCCTATCTCCAGTGAAAAATT 59.174 38.462 0.00 0.00 39.13 1.82
1633 1704 7.931948 ACTAATCAGTTAACTACAGTTGCTGTT 59.068 33.333 8.04 15.95 42.59 3.16
1649 1720 5.744666 TGCTGTTACACAAACTTCCTAAC 57.255 39.130 0.00 0.00 38.99 2.34
1662 1733 9.442047 ACAAACTTCCTAACATTCTAGAATCAG 57.558 33.333 15.24 11.91 0.00 2.90
1678 1749 8.267183 TCTAGAATCAGAATTGCCTTTGTATCA 58.733 33.333 0.00 0.00 0.00 2.15
1697 1768 0.676184 ACTGAGAGCTGCTGAACGAA 59.324 50.000 7.01 0.00 0.00 3.85
1715 1786 7.870826 TGAACGAATTGTGACAAATAAGACAT 58.129 30.769 0.62 0.00 0.00 3.06
1757 1828 6.061441 TGAACACTTCATACTGACCATGTTT 58.939 36.000 0.00 0.00 34.08 2.83
1760 1831 7.849804 ACACTTCATACTGACCATGTTTATC 57.150 36.000 0.00 0.00 0.00 1.75
1775 1846 8.043710 ACCATGTTTATCTAGAATAGCTATGGC 58.956 37.037 7.09 2.84 38.99 4.40
1776 1847 7.497249 CCATGTTTATCTAGAATAGCTATGGCC 59.503 40.741 7.09 0.00 38.99 5.36
1779 1850 9.494055 TGTTTATCTAGAATAGCTATGGCCTAT 57.506 33.333 7.09 2.10 38.99 2.57
1789 1860 3.916349 AGCTATGGCCTATTGGGTAATGA 59.084 43.478 3.32 0.00 39.73 2.57
1796 1867 4.019321 GGCCTATTGGGTAATGATGAGCTA 60.019 45.833 0.00 0.00 37.43 3.32
1800 1871 3.961480 TGGGTAATGATGAGCTATCCG 57.039 47.619 0.00 0.00 34.77 4.18
1824 1895 1.830279 CAAGGAGCAGAAAGGCATCA 58.170 50.000 0.00 0.00 35.83 3.07
1836 1907 6.914757 GCAGAAAGGCATCATAGTTCAAATAC 59.085 38.462 0.00 0.00 0.00 1.89
1839 1910 7.985184 AGAAAGGCATCATAGTTCAAATACGTA 59.015 33.333 0.00 0.00 0.00 3.57
1841 1912 8.677148 AAGGCATCATAGTTCAAATACGTAAT 57.323 30.769 0.00 0.00 0.00 1.89
1898 1969 3.652869 AGGTCAGGAAAAATCTGGACTCA 59.347 43.478 0.00 0.00 33.36 3.41
1905 1976 5.548056 AGGAAAAATCTGGACTCAGGAGTTA 59.452 40.000 3.07 0.00 42.66 2.24
1921 1992 3.557595 GGAGTTATCTCATGAAGTTGGCG 59.442 47.826 0.00 0.00 42.05 5.69
1941 2012 5.263968 GCGCTAGCCTAGGATATAAATCA 57.736 43.478 14.75 0.00 37.42 2.57
1942 2013 5.848406 GCGCTAGCCTAGGATATAAATCAT 58.152 41.667 14.75 0.00 37.42 2.45
1943 2014 6.284459 GCGCTAGCCTAGGATATAAATCATT 58.716 40.000 14.75 0.00 37.42 2.57
1944 2015 6.201806 GCGCTAGCCTAGGATATAAATCATTG 59.798 42.308 14.75 0.00 37.42 2.82
1945 2016 7.268586 CGCTAGCCTAGGATATAAATCATTGT 58.731 38.462 14.75 0.00 33.41 2.71
1946 2017 8.414003 CGCTAGCCTAGGATATAAATCATTGTA 58.586 37.037 14.75 0.00 33.41 2.41
2046 2123 3.953712 TTAGAAGTCGGCACTGATTCA 57.046 42.857 0.00 0.00 31.06 2.57
2049 2126 2.499289 AGAAGTCGGCACTGATTCATCT 59.501 45.455 0.00 0.00 31.06 2.90
2051 2128 3.724508 AGTCGGCACTGATTCATCTAG 57.275 47.619 0.00 0.00 0.00 2.43
2055 2132 4.505922 GTCGGCACTGATTCATCTAGAAAG 59.494 45.833 0.00 0.00 40.22 2.62
2106 2183 4.811969 ACTCAATATCACCGGTGTAACA 57.188 40.909 32.74 15.46 39.98 2.41
2129 2206 8.574196 ACAGCATTATGTTGTTTTCAGTTTAC 57.426 30.769 8.86 0.00 38.70 2.01
2226 2303 0.035056 AACTGCAAGATCCTTCCCCG 60.035 55.000 0.00 0.00 37.43 5.73
2266 2343 3.835978 TCAGGTAGTAGCTTAAGGTTGCA 59.164 43.478 13.21 0.00 0.00 4.08
2267 2344 4.469945 TCAGGTAGTAGCTTAAGGTTGCAT 59.530 41.667 13.21 0.00 0.00 3.96
2298 2376 6.942532 TGTTCCATATTTACCTTCATCTGC 57.057 37.500 0.00 0.00 0.00 4.26
2304 2382 7.229306 TCCATATTTACCTTCATCTGCACATTC 59.771 37.037 0.00 0.00 0.00 2.67
2324 2402 8.592155 CACATTCACAGAGCAATTTATCATTTG 58.408 33.333 0.00 0.00 0.00 2.32
2331 2409 6.809689 CAGAGCAATTTATCATTTGTTCTGCA 59.190 34.615 13.82 0.00 46.65 4.41
2475 2553 1.933812 ATTAGGGGTGGGGTGGTGG 60.934 63.158 0.00 0.00 0.00 4.61
2494 2572 0.470268 GCCTGGTGGGGGTTGTTTTA 60.470 55.000 0.00 0.00 35.12 1.52
2497 2575 2.301583 CCTGGTGGGGGTTGTTTTATTG 59.698 50.000 0.00 0.00 0.00 1.90
2525 2603 5.595133 ACCTGACTTATCTCCTACTAACTGC 59.405 44.000 0.00 0.00 0.00 4.40
2547 2625 1.005450 GCAGGACTTTACCCATCCCAA 59.995 52.381 0.00 0.00 32.47 4.12
2568 2646 8.069356 TCCCAACTACAACTATCCTCCTATTAA 58.931 37.037 0.00 0.00 0.00 1.40
2607 2685 2.553904 CCAACTCTGCAGATCCAGGTTT 60.554 50.000 18.63 0.00 33.64 3.27
2665 2744 1.135199 CATCATGCTCACAGTTTGCCC 60.135 52.381 0.00 0.00 0.00 5.36
2668 2747 0.698238 ATGCTCACAGTTTGCCCCTA 59.302 50.000 0.00 0.00 0.00 3.53
2861 2948 6.074302 CCGTTCTTGTTCAGGTATTCATATCG 60.074 42.308 0.00 0.00 0.00 2.92
2870 2957 7.425577 TCAGGTATTCATATCGATGCAAAAG 57.574 36.000 8.54 0.00 32.62 2.27
2908 3001 1.487142 TGGAACTGTCTTTTCGTGGGA 59.513 47.619 0.00 0.00 0.00 4.37
2928 3021 3.195698 GTCGATGGAACTGCCGGC 61.196 66.667 22.73 22.73 40.66 6.13
3014 3107 5.804639 TGGCTGTATAGTATTAATGGCCTG 58.195 41.667 3.32 0.00 38.07 4.85
3018 3111 7.119846 GGCTGTATAGTATTAATGGCCTGAAAG 59.880 40.741 3.32 0.00 34.86 2.62
3033 3128 6.656270 TGGCCTGAAAGCTGATGTATTATATG 59.344 38.462 3.32 0.00 0.00 1.78
3114 3209 3.454858 TCCCTGCATCTCTTCCTTTACT 58.545 45.455 0.00 0.00 0.00 2.24
3135 3230 2.154462 GCAGGTTGTATCAGTTGCTGT 58.846 47.619 0.00 0.00 32.61 4.40
3136 3231 3.244387 TGCAGGTTGTATCAGTTGCTGTA 60.244 43.478 0.00 0.00 32.61 2.74
3241 3336 3.599730 AAGCTAAAAGATTTGCCAGGC 57.400 42.857 3.66 3.66 37.92 4.85
3245 3340 1.047801 AAAAGATTTGCCAGGCGGTT 58.952 45.000 7.03 0.00 33.28 4.44
3323 7096 7.161404 AGATGCACTCTTTGATGTAAGTGTTA 58.839 34.615 0.00 0.00 40.92 2.41
3462 7237 1.194121 TTGCTCAGGAGGCTGTAGCA 61.194 55.000 6.18 0.00 44.36 3.49
3522 7298 1.218875 TGAACAAGCGTGCGATCGTT 61.219 50.000 17.81 0.00 0.00 3.85
3525 7301 1.343821 CAAGCGTGCGATCGTTACC 59.656 57.895 17.81 10.10 0.00 2.85
3584 7360 1.009060 TGGATAGCCTGTGGGGAACTA 59.991 52.381 0.00 0.00 37.23 2.24
3586 7362 2.399580 GATAGCCTGTGGGGAACTACT 58.600 52.381 0.00 0.00 43.24 2.57
3587 7363 1.568504 TAGCCTGTGGGGAACTACTG 58.431 55.000 0.00 0.00 43.24 2.74
3589 7365 0.036294 GCCTGTGGGGAACTACTGAC 60.036 60.000 0.00 0.00 42.20 3.51
3592 7368 2.289694 CCTGTGGGGAACTACTGACAAG 60.290 54.545 0.00 0.00 42.20 3.16
3594 7370 3.576982 CTGTGGGGAACTACTGACAAGTA 59.423 47.826 0.00 0.00 42.20 2.24
3595 7371 3.968649 TGTGGGGAACTACTGACAAGTAA 59.031 43.478 0.00 0.00 43.24 2.24
3596 7372 4.409574 TGTGGGGAACTACTGACAAGTAAA 59.590 41.667 0.00 0.00 43.24 2.01
3599 7375 5.367352 TGGGGAACTACTGACAAGTAAAGAA 59.633 40.000 0.00 0.00 38.43 2.52
3607 7383 8.985805 ACTACTGACAAGTAAAGAAATTAACGG 58.014 33.333 0.00 0.00 38.43 4.44
3609 7385 7.858583 ACTGACAAGTAAAGAAATTAACGGTC 58.141 34.615 0.00 0.00 33.79 4.79
3610 7386 6.879962 TGACAAGTAAAGAAATTAACGGTCG 58.120 36.000 0.00 0.00 0.00 4.79
3611 7387 5.682869 ACAAGTAAAGAAATTAACGGTCGC 58.317 37.500 0.00 0.00 0.00 5.19
3613 7389 5.927954 AGTAAAGAAATTAACGGTCGCAA 57.072 34.783 0.00 0.00 0.00 4.85
3621 7408 0.598158 TAACGGTCGCAAGTGTCACC 60.598 55.000 0.00 0.00 39.48 4.02
3635 7422 4.579454 GTGTCACCACTCACTACTGTTA 57.421 45.455 0.00 0.00 38.61 2.41
3638 7425 4.647853 TGTCACCACTCACTACTGTTACTT 59.352 41.667 0.00 0.00 0.00 2.24
3639 7426 4.982916 GTCACCACTCACTACTGTTACTTG 59.017 45.833 0.00 0.00 0.00 3.16
3648 7435 5.517411 TCACTACTGTTACTTGTGTTTCACG 59.483 40.000 0.00 0.00 37.14 4.35
3654 7441 1.299541 ACTTGTGTTTCACGCTGAGG 58.700 50.000 0.00 0.00 37.14 3.86
3692 7485 1.953559 TGCATTAGGAGAATCGTGGC 58.046 50.000 0.00 0.00 33.79 5.01
3702 7495 4.758674 AGGAGAATCGTGGCAATTGATATG 59.241 41.667 10.34 2.48 34.37 1.78
3744 7537 3.510388 CAGCTAGTGGAGATGTTTCGA 57.490 47.619 0.00 0.00 36.78 3.71
3746 7539 2.826128 AGCTAGTGGAGATGTTTCGACA 59.174 45.455 0.00 0.00 0.00 4.35
3771 7564 6.004408 TCCTTTAATTTTTCACGGTACAGC 57.996 37.500 0.00 0.00 0.00 4.40
3837 7650 7.756722 GTGATTACCAGTCTTTTTCATTGATGG 59.243 37.037 0.00 0.00 0.00 3.51
3840 7653 3.196254 CCAGTCTTTTTCATTGATGGGGG 59.804 47.826 0.00 0.00 0.00 5.40
3842 7655 2.093500 GTCTTTTTCATTGATGGGGGCC 60.093 50.000 0.00 0.00 0.00 5.80
3843 7656 2.190538 CTTTTTCATTGATGGGGGCCT 58.809 47.619 0.84 0.00 0.00 5.19
3847 7660 0.324552 TCATTGATGGGGGCCTTGTG 60.325 55.000 0.84 0.00 0.00 3.33
3865 7678 4.044336 TGTGGAACTCATTTTGCTTGTG 57.956 40.909 0.00 0.00 38.04 3.33
3867 7680 2.224018 TGGAACTCATTTTGCTTGTGGC 60.224 45.455 0.00 0.00 42.22 5.01
3877 7690 2.512485 TGCTTGTGGCTTTGTCATTG 57.488 45.000 0.00 0.00 42.39 2.82
3883 7696 2.230992 TGTGGCTTTGTCATTGTATGCC 59.769 45.455 0.00 0.00 39.33 4.40
3889 7702 4.545610 CTTTGTCATTGTATGCCGTTTGT 58.454 39.130 0.00 0.00 0.00 2.83
3904 7717 3.662186 CCGTTTGTTTTAGCGCTTTGTAG 59.338 43.478 18.68 0.00 0.00 2.74
3909 7722 5.291293 TGTTTTAGCGCTTTGTAGAATCC 57.709 39.130 18.68 0.00 0.00 3.01
3912 7725 6.651643 TGTTTTAGCGCTTTGTAGAATCCTTA 59.348 34.615 18.68 0.00 0.00 2.69
3914 7727 3.798202 AGCGCTTTGTAGAATCCTTAGG 58.202 45.455 2.64 0.00 0.00 2.69
3915 7728 2.288186 GCGCTTTGTAGAATCCTTAGGC 59.712 50.000 0.00 0.00 0.00 3.93
3917 7730 3.938963 CGCTTTGTAGAATCCTTAGGCAA 59.061 43.478 0.00 0.00 0.00 4.52
3922 7735 5.116084 TGTAGAATCCTTAGGCAATTGCT 57.884 39.130 28.42 17.09 41.70 3.91
3924 7737 3.294214 AGAATCCTTAGGCAATTGCTGG 58.706 45.455 28.42 22.77 41.70 4.85
4083 7936 8.134895 TGGTTTTAAGTCAAATCAATGTCAGAC 58.865 33.333 0.00 0.00 0.00 3.51
4435 9545 8.506168 TTTCTCAACTGAGTGAAGTATGTTTT 57.494 30.769 6.61 0.00 42.60 2.43
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
799 809 6.325545 TCCGGGATGTTAGAATACTTGTATGT 59.674 38.462 0.00 0.00 0.00 2.29
826 836 5.929992 CACTCAACTTGCATGAAATTCCAAT 59.070 36.000 6.60 0.00 0.00 3.16
828 838 4.341806 ACACTCAACTTGCATGAAATTCCA 59.658 37.500 6.60 0.00 0.00 3.53
836 846 4.512944 ACTTGTCTACACTCAACTTGCATG 59.487 41.667 0.00 0.00 0.00 4.06
840 850 4.260375 GCACACTTGTCTACACTCAACTTG 60.260 45.833 0.00 0.00 0.00 3.16
841 851 3.871594 GCACACTTGTCTACACTCAACTT 59.128 43.478 0.00 0.00 0.00 2.66
848 858 1.986378 CTAGCGCACACTTGTCTACAC 59.014 52.381 11.47 0.00 0.00 2.90
850 860 2.349297 ACTAGCGCACACTTGTCTAC 57.651 50.000 11.47 0.00 0.00 2.59
852 862 2.296471 AGTAACTAGCGCACACTTGTCT 59.704 45.455 11.47 0.00 0.00 3.41
858 868 0.442699 GGCAAGTAACTAGCGCACAC 59.557 55.000 11.47 0.00 0.00 3.82
859 869 0.034198 TGGCAAGTAACTAGCGCACA 59.966 50.000 11.47 0.00 0.00 4.57
860 870 1.153353 TTGGCAAGTAACTAGCGCAC 58.847 50.000 11.47 0.00 0.00 5.34
861 871 1.885560 TTTGGCAAGTAACTAGCGCA 58.114 45.000 11.47 0.00 0.00 6.09
862 872 2.225727 AGTTTTGGCAAGTAACTAGCGC 59.774 45.455 14.07 0.00 30.75 5.92
863 873 4.219033 CAAGTTTTGGCAAGTAACTAGCG 58.781 43.478 15.57 6.21 32.17 4.26
864 874 5.183014 ACAAGTTTTGGCAAGTAACTAGC 57.817 39.130 15.57 0.00 32.17 3.42
865 875 7.254852 TCAAACAAGTTTTGGCAAGTAACTAG 58.745 34.615 15.57 6.37 32.17 2.57
866 876 7.121463 TCTCAAACAAGTTTTGGCAAGTAACTA 59.879 33.333 15.57 1.47 32.17 2.24
867 877 6.031751 TCAAACAAGTTTTGGCAAGTAACT 57.968 33.333 10.71 10.71 33.76 2.24
876 889 3.065371 AGCGTCTCTCAAACAAGTTTTGG 59.935 43.478 0.00 0.00 34.12 3.28
890 903 1.629043 TTGGGTACAAGAGCGTCTCT 58.371 50.000 3.88 3.88 43.37 3.10
1008 1064 3.143728 GTCTTTCCCCTTTTCACGCTTA 58.856 45.455 0.00 0.00 0.00 3.09
1012 1068 2.293399 CCTTGTCTTTCCCCTTTTCACG 59.707 50.000 0.00 0.00 0.00 4.35
1075 1131 7.722728 TGCATATGAGATTTAGCTGGAGAAAAT 59.277 33.333 6.97 0.00 0.00 1.82
1106 1162 1.369689 GCAGCAAACACACTGAGCG 60.370 57.895 0.00 0.00 35.90 5.03
1176 1237 0.909623 TCTTAGTAGGCACCTTGGGC 59.090 55.000 0.00 0.00 0.00 5.36
1206 1267 8.908786 ATGTACATTACATCTTAGGGACAATG 57.091 34.615 1.41 0.00 45.83 2.82
1298 1360 4.804108 TCCCAAATTACTTTCATTGCACG 58.196 39.130 0.00 0.00 0.00 5.34
1357 1424 5.824624 TCCTCAACAGATCCTTATCAATTGC 59.175 40.000 0.00 0.00 34.28 3.56
1434 1502 6.717997 AGAATAAAACACCACCGACCTAAATT 59.282 34.615 0.00 0.00 0.00 1.82
1564 1635 3.377253 AGTGGATGCAGGATCAAACAT 57.623 42.857 4.07 0.00 31.91 2.71
1569 1640 0.761187 GGCTAGTGGATGCAGGATCA 59.239 55.000 4.07 0.00 31.91 2.92
1580 1651 2.950781 TCACTGGAGATAGGCTAGTGG 58.049 52.381 11.74 0.00 42.81 4.00
1606 1677 8.582437 ACAGCAACTGTAGTTAACTGATTAGTA 58.418 33.333 23.07 0.00 43.46 1.82
1649 1720 7.769220 ACAAAGGCAATTCTGATTCTAGAATG 58.231 34.615 22.61 9.38 44.43 2.67
1662 1733 5.448360 GCTCTCAGTGATACAAAGGCAATTC 60.448 44.000 0.00 0.00 0.00 2.17
1665 1736 3.008375 AGCTCTCAGTGATACAAAGGCAA 59.992 43.478 0.00 0.00 0.00 4.52
1666 1737 2.568956 AGCTCTCAGTGATACAAAGGCA 59.431 45.455 0.00 0.00 0.00 4.75
1667 1738 2.935201 CAGCTCTCAGTGATACAAAGGC 59.065 50.000 0.00 0.00 0.00 4.35
1678 1749 0.676184 TTCGTTCAGCAGCTCTCAGT 59.324 50.000 0.00 0.00 0.00 3.41
1697 1768 9.896645 AGATACTGATGTCTTATTTGTCACAAT 57.103 29.630 0.00 0.00 0.00 2.71
1757 1828 7.510685 CCCAATAGGCCATAGCTATTCTAGATA 59.489 40.741 5.01 0.00 39.73 1.98
1760 1831 5.426833 ACCCAATAGGCCATAGCTATTCTAG 59.573 44.000 5.01 0.00 40.58 2.43
1773 1844 3.084786 GCTCATCATTACCCAATAGGCC 58.915 50.000 0.00 0.00 40.58 5.19
1775 1846 6.352516 GGATAGCTCATCATTACCCAATAGG 58.647 44.000 0.00 0.00 37.20 2.57
1776 1847 6.045318 CGGATAGCTCATCATTACCCAATAG 58.955 44.000 0.00 0.00 35.11 1.73
1779 1850 3.901222 TCGGATAGCTCATCATTACCCAA 59.099 43.478 0.00 0.00 35.11 4.12
1780 1851 3.506398 TCGGATAGCTCATCATTACCCA 58.494 45.455 0.00 0.00 35.11 4.51
1781 1852 3.511934 ACTCGGATAGCTCATCATTACCC 59.488 47.826 0.00 0.00 35.11 3.69
1789 1860 1.069823 CCTTGCACTCGGATAGCTCAT 59.930 52.381 0.00 0.00 0.00 2.90
1814 1885 7.016361 ACGTATTTGAACTATGATGCCTTTC 57.984 36.000 0.00 0.00 0.00 2.62
1841 1912 6.552859 TTCGACAATGCAAATTCAGTAGAA 57.447 33.333 0.00 0.00 38.31 2.10
1846 1917 3.567530 TGCTTCGACAATGCAAATTCAG 58.432 40.909 0.00 0.00 33.48 3.02
1848 1919 3.605486 GTCTGCTTCGACAATGCAAATTC 59.395 43.478 0.00 0.00 36.22 2.17
1860 1931 2.560981 TGACCTAACATGTCTGCTTCGA 59.439 45.455 0.00 0.00 33.83 3.71
1862 1933 3.055819 TCCTGACCTAACATGTCTGCTTC 60.056 47.826 0.00 0.00 33.83 3.86
1876 1947 3.652869 TGAGTCCAGATTTTTCCTGACCT 59.347 43.478 0.00 0.00 33.65 3.85
1898 1969 4.681781 CGCCAACTTCATGAGATAACTCCT 60.682 45.833 0.00 0.00 41.99 3.69
1905 1976 2.831333 CTAGCGCCAACTTCATGAGAT 58.169 47.619 2.29 0.00 0.00 2.75
1941 2012 9.357652 GCATGTCATTAGTTCAAAACATACAAT 57.642 29.630 0.00 0.00 29.91 2.71
1942 2013 8.355913 TGCATGTCATTAGTTCAAAACATACAA 58.644 29.630 0.00 0.00 29.91 2.41
1943 2014 7.880105 TGCATGTCATTAGTTCAAAACATACA 58.120 30.769 0.00 0.00 29.91 2.29
1944 2015 7.008628 GCTGCATGTCATTAGTTCAAAACATAC 59.991 37.037 0.00 0.00 29.91 2.39
1945 2016 7.028962 GCTGCATGTCATTAGTTCAAAACATA 58.971 34.615 0.00 0.00 29.91 2.29
1946 2017 5.865552 GCTGCATGTCATTAGTTCAAAACAT 59.134 36.000 0.00 0.00 30.65 2.71
1947 2018 5.221204 TGCTGCATGTCATTAGTTCAAAACA 60.221 36.000 0.00 0.00 0.00 2.83
1949 2020 5.450592 TGCTGCATGTCATTAGTTCAAAA 57.549 34.783 0.00 0.00 0.00 2.44
1974 2050 7.630082 ACAATTATCAAGCCTCTAAGGTACAA 58.370 34.615 0.00 0.00 37.80 2.41
1977 2053 6.542370 GCAACAATTATCAAGCCTCTAAGGTA 59.458 38.462 0.00 0.00 37.80 3.08
2035 2112 6.426328 CCATACTTTCTAGATGAATCAGTGCC 59.574 42.308 0.00 0.00 34.24 5.01
2075 2152 7.696453 CACCGGTGATATTGAGTTTGTTATTTC 59.304 37.037 31.31 0.00 0.00 2.17
2076 2153 7.175990 ACACCGGTGATATTGAGTTTGTTATTT 59.824 33.333 40.21 8.43 0.00 1.40
2077 2154 6.657541 ACACCGGTGATATTGAGTTTGTTATT 59.342 34.615 40.21 8.79 0.00 1.40
2085 2162 4.755411 CTGTTACACCGGTGATATTGAGT 58.245 43.478 40.21 18.06 0.00 3.41
2093 2170 3.266636 CATAATGCTGTTACACCGGTGA 58.733 45.455 40.21 21.04 0.00 4.02
2095 2172 3.343941 ACATAATGCTGTTACACCGGT 57.656 42.857 0.00 0.00 0.00 5.28
2106 2183 9.762933 ATTGTAAACTGAAAACAACATAATGCT 57.237 25.926 0.00 0.00 36.06 3.79
2135 2212 8.861101 GTCGTAATGGAGCAGTATGTTATTATC 58.139 37.037 0.00 0.00 39.31 1.75
2136 2213 7.541091 CGTCGTAATGGAGCAGTATGTTATTAT 59.459 37.037 0.00 0.00 39.31 1.28
2184 2261 5.192927 TGAAGAGTTCACTTGTCCAAATGT 58.807 37.500 0.00 0.00 34.08 2.71
2226 2303 3.696548 CCTGATGAAGAACTTTTAGGGGC 59.303 47.826 0.00 0.00 0.00 5.80
2298 2376 8.592155 CAAATGATAAATTGCTCTGTGAATGTG 58.408 33.333 0.00 0.00 0.00 3.21
2304 2382 7.201410 GCAGAACAAATGATAAATTGCTCTGTG 60.201 37.037 11.35 0.00 45.13 3.66
2324 2402 4.920376 TGCTCTTGTTTAACTTGCAGAAC 58.080 39.130 0.00 0.00 0.00 3.01
2331 2409 4.439253 ACCTCCTGCTCTTGTTTAACTT 57.561 40.909 0.00 0.00 0.00 2.66
2447 2525 3.506398 CCCACCCCTAATGTTGTTCTTT 58.494 45.455 0.00 0.00 0.00 2.52
2453 2531 0.324275 CCACCCCACCCCTAATGTTG 60.324 60.000 0.00 0.00 0.00 3.33
2475 2553 0.470268 TAAAACAACCCCCACCAGGC 60.470 55.000 0.00 0.00 0.00 4.85
2476 2554 2.301583 CAATAAAACAACCCCCACCAGG 59.698 50.000 0.00 0.00 0.00 4.45
2477 2555 3.235200 TCAATAAAACAACCCCCACCAG 58.765 45.455 0.00 0.00 0.00 4.00
2478 2556 3.330126 TCAATAAAACAACCCCCACCA 57.670 42.857 0.00 0.00 0.00 4.17
2479 2557 4.901197 AATCAATAAAACAACCCCCACC 57.099 40.909 0.00 0.00 0.00 4.61
2480 2558 5.482526 AGGTAATCAATAAAACAACCCCCAC 59.517 40.000 0.00 0.00 0.00 4.61
2481 2559 5.482175 CAGGTAATCAATAAAACAACCCCCA 59.518 40.000 0.00 0.00 0.00 4.96
2497 2575 9.577222 AGTTAGTAGGAGATAAGTCAGGTAATC 57.423 37.037 0.00 0.00 0.00 1.75
2518 2596 3.003480 GGTAAAGTCCTGCAGCAGTTAG 58.997 50.000 21.26 6.24 0.00 2.34
2519 2597 2.290071 GGGTAAAGTCCTGCAGCAGTTA 60.290 50.000 21.26 10.05 0.00 2.24
2520 2598 1.545651 GGGTAAAGTCCTGCAGCAGTT 60.546 52.381 21.26 11.05 0.00 3.16
2525 2603 1.408822 GGGATGGGTAAAGTCCTGCAG 60.409 57.143 6.78 6.78 32.55 4.41
2547 2625 8.808092 GCAGATTAATAGGAGGATAGTTGTAGT 58.192 37.037 0.00 0.00 0.00 2.73
2588 2666 3.152341 CAAAACCTGGATCTGCAGAGTT 58.848 45.455 22.96 16.51 0.00 3.01
2607 2685 7.913674 AAACTGCAAAAATAAAGAACACCAA 57.086 28.000 0.00 0.00 0.00 3.67
2618 2696 6.032717 GCAAAAGCCAAAAACTGCAAAAATA 58.967 32.000 0.00 0.00 0.00 1.40
2784 2871 6.414732 TGATATACATACCATTAGCCCAAGC 58.585 40.000 0.00 0.00 40.32 4.01
2861 2948 3.435105 TGTGGTGTGTTCTTTTGCATC 57.565 42.857 0.00 0.00 0.00 3.91
2870 2957 2.884012 TCCATCAACATGTGGTGTGTTC 59.116 45.455 0.00 0.00 41.14 3.18
2908 3001 0.744414 CCGGCAGTTCCATCGACATT 60.744 55.000 0.00 0.00 34.01 2.71
2978 3071 7.655521 ACTATACAGCCAGTACAATCAGTTA 57.344 36.000 0.00 0.00 35.05 2.24
2991 3084 5.546110 TCAGGCCATTAATACTATACAGCCA 59.454 40.000 5.01 0.00 40.37 4.75
3007 3100 3.589951 ATACATCAGCTTTCAGGCCAT 57.410 42.857 5.01 0.00 0.00 4.40
3018 3111 9.746711 GTCAAACGATTCATATAATACATCAGC 57.253 33.333 0.00 0.00 0.00 4.26
3033 3128 3.390135 TCAGTGTCCTGTCAAACGATTC 58.610 45.455 0.00 0.00 39.82 2.52
3114 3209 2.153645 CAGCAACTGATACAACCTGCA 58.846 47.619 0.00 0.00 32.44 4.41
3135 3230 3.384789 GTCACTGGTGTCCATATCTGCTA 59.615 47.826 0.53 0.00 30.82 3.49
3136 3231 2.169352 GTCACTGGTGTCCATATCTGCT 59.831 50.000 0.53 0.00 30.82 4.24
3212 3307 5.324697 CAAATCTTTTAGCTTACAGCCGTC 58.675 41.667 0.00 0.00 43.77 4.79
3241 3336 1.937546 GCAGCTTCCCCATGAAACCG 61.938 60.000 0.00 0.00 31.06 4.44
3245 3340 1.078214 CGAGCAGCTTCCCCATGAA 60.078 57.895 0.00 0.00 0.00 2.57
3335 7108 5.697848 CAGAAAATGCAGCATAAAGAAGC 57.302 39.130 8.75 0.00 0.00 3.86
3362 7135 4.890378 TCGAAAGACTAGACGTAATCACG 58.110 43.478 0.00 0.00 44.93 4.35
3363 7136 6.484540 TCATCGAAAGACTAGACGTAATCAC 58.515 40.000 0.00 0.00 46.97 3.06
3364 7137 6.673154 TCATCGAAAGACTAGACGTAATCA 57.327 37.500 0.00 0.00 46.97 2.57
3365 7138 6.087028 GCATCATCGAAAGACTAGACGTAATC 59.913 42.308 0.00 0.00 46.97 1.75
3366 7139 5.915758 GCATCATCGAAAGACTAGACGTAAT 59.084 40.000 0.00 0.00 46.97 1.89
3367 7140 5.163693 TGCATCATCGAAAGACTAGACGTAA 60.164 40.000 0.00 0.00 46.97 3.18
3462 7237 5.104374 CAGTGCTTCTTGTTTGTGTTGATT 58.896 37.500 0.00 0.00 0.00 2.57
3522 7298 4.141088 ACCAAGTAGTCGATATCAGGGGTA 60.141 45.833 3.12 0.00 0.00 3.69
3525 7301 5.314529 TCTACCAAGTAGTCGATATCAGGG 58.685 45.833 3.12 0.00 37.41 4.45
3584 7360 7.306983 CGACCGTTAATTTCTTTACTTGTCAGT 60.307 37.037 0.00 0.00 36.99 3.41
3586 7362 6.564499 GCGACCGTTAATTTCTTTACTTGTCA 60.564 38.462 0.00 0.00 0.00 3.58
3587 7363 5.787062 GCGACCGTTAATTTCTTTACTTGTC 59.213 40.000 0.00 0.00 0.00 3.18
3589 7365 5.681880 TGCGACCGTTAATTTCTTTACTTG 58.318 37.500 0.00 0.00 0.00 3.16
3592 7368 5.562623 CACTTGCGACCGTTAATTTCTTTAC 59.437 40.000 0.00 0.00 0.00 2.01
3594 7370 4.035909 ACACTTGCGACCGTTAATTTCTTT 59.964 37.500 0.00 0.00 0.00 2.52
3595 7371 3.562557 ACACTTGCGACCGTTAATTTCTT 59.437 39.130 0.00 0.00 0.00 2.52
3596 7372 3.135994 ACACTTGCGACCGTTAATTTCT 58.864 40.909 0.00 0.00 0.00 2.52
3599 7375 2.222445 GTGACACTTGCGACCGTTAATT 59.778 45.455 0.00 0.00 0.00 1.40
3621 7408 6.533723 TGAAACACAAGTAACAGTAGTGAGTG 59.466 38.462 4.09 5.71 34.47 3.51
3625 7412 5.724239 CGTGAAACACAAGTAACAGTAGTG 58.276 41.667 0.00 0.00 35.74 2.74
3633 7420 2.869801 CCTCAGCGTGAAACACAAGTAA 59.130 45.455 0.00 0.00 35.74 2.24
3635 7422 1.134521 TCCTCAGCGTGAAACACAAGT 60.135 47.619 0.00 0.00 35.74 3.16
3638 7425 1.872952 CAATCCTCAGCGTGAAACACA 59.127 47.619 0.00 0.00 35.74 3.72
3639 7426 1.873591 ACAATCCTCAGCGTGAAACAC 59.126 47.619 0.00 0.00 35.74 3.32
3648 7435 2.706339 ACATCTCCACAATCCTCAGC 57.294 50.000 0.00 0.00 0.00 4.26
3654 7441 9.241317 CTAATGCAAATTTACATCTCCACAATC 57.759 33.333 4.36 0.00 0.00 2.67
3692 7485 6.368213 CACATCCACGTCATCATATCAATTG 58.632 40.000 0.00 0.00 0.00 2.32
3702 7495 2.961526 ACTACCACATCCACGTCATC 57.038 50.000 0.00 0.00 0.00 2.92
3742 7535 6.146898 ACCGTGAAAAATTAAAGGATTGTCG 58.853 36.000 0.00 0.00 0.00 4.35
3744 7537 7.942990 TGTACCGTGAAAAATTAAAGGATTGT 58.057 30.769 0.00 0.00 0.00 2.71
3746 7539 7.088272 GCTGTACCGTGAAAAATTAAAGGATT 58.912 34.615 0.00 0.00 0.00 3.01
3771 7564 0.107831 TGACAGAGAAAACCCACCCG 59.892 55.000 0.00 0.00 0.00 5.28
3824 7637 2.305343 CAAGGCCCCCATCAATGAAAAA 59.695 45.455 0.00 0.00 0.00 1.94
3837 7650 0.251787 AATGAGTTCCACAAGGCCCC 60.252 55.000 0.00 0.00 33.74 5.80
3840 7653 2.036346 AGCAAAATGAGTTCCACAAGGC 59.964 45.455 0.00 0.00 33.74 4.35
3842 7655 4.505191 CACAAGCAAAATGAGTTCCACAAG 59.495 41.667 0.00 0.00 0.00 3.16
3843 7656 4.431809 CACAAGCAAAATGAGTTCCACAA 58.568 39.130 0.00 0.00 0.00 3.33
3847 7660 2.407090 GCCACAAGCAAAATGAGTTCC 58.593 47.619 0.00 0.00 42.97 3.62
3865 7678 1.472480 ACGGCATACAATGACAAAGCC 59.528 47.619 0.00 0.00 38.56 4.35
3867 7680 4.545610 ACAAACGGCATACAATGACAAAG 58.454 39.130 0.00 0.00 38.56 2.77
3877 7690 1.908889 GCGCTAAAACAAACGGCATAC 59.091 47.619 0.00 0.00 0.00 2.39
3883 7696 4.520078 TCTACAAAGCGCTAAAACAAACG 58.480 39.130 12.05 0.00 0.00 3.60
3889 7702 6.315393 CCTAAGGATTCTACAAAGCGCTAAAA 59.685 38.462 12.05 0.00 0.00 1.52
3904 7717 3.026694 ACCAGCAATTGCCTAAGGATTC 58.973 45.455 26.45 0.00 43.38 2.52
4083 7936 1.846439 ACCTAACATGGGTCCCATCAG 59.154 52.381 21.49 16.67 43.15 2.90


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.