Multiple sequence alignment - TraesCS4B01G071100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G071100 chr4B 100.000 2909 0 0 1 2909 65544010 65541102 0.000000e+00 5373.0
1 TraesCS4B01G071100 chr4B 97.266 2085 53 2 826 2909 65115911 65113830 0.000000e+00 3531.0
2 TraesCS4B01G071100 chr4B 93.478 2116 100 15 801 2909 65165199 65163115 0.000000e+00 3109.0
3 TraesCS4B01G071100 chr4B 95.199 1812 71 7 824 2630 64808849 64807049 0.000000e+00 2850.0
4 TraesCS4B01G071100 chr4B 91.164 1709 91 22 826 2494 65094890 65093202 0.000000e+00 2265.0
5 TraesCS4B01G071100 chr4B 91.164 1709 91 22 826 2494 65523498 65521810 0.000000e+00 2265.0
6 TraesCS4B01G071100 chr4B 93.562 1227 65 6 830 2046 65639621 65638399 0.000000e+00 1816.0
7 TraesCS4B01G071100 chr4B 92.755 1256 80 4 794 2046 65645193 65643946 0.000000e+00 1805.0
8 TraesCS4B01G071100 chr4B 91.359 1273 77 12 801 2073 65622673 65621434 0.000000e+00 1711.0
9 TraesCS4B01G071100 chr4B 93.532 974 39 13 1940 2909 64826527 64825574 0.000000e+00 1428.0
10 TraesCS4B01G071100 chr4B 90.430 512 29 7 178 680 64828137 64827637 0.000000e+00 656.0
11 TraesCS4B01G071100 chr4B 90.430 512 29 7 178 680 65165707 65165207 0.000000e+00 656.0
12 TraesCS4B01G071100 chr4B 88.778 401 29 6 2 400 65636376 65635990 7.290000e-131 477.0
13 TraesCS4B01G071100 chr4B 95.018 281 12 2 2629 2909 64806955 64806677 9.570000e-120 440.0
14 TraesCS4B01G071100 chr4B 88.950 362 28 3 2 361 65641939 65641588 1.240000e-118 436.0
15 TraesCS4B01G071100 chr4B 93.407 182 10 2 2681 2862 65619252 65619073 4.780000e-68 268.0
16 TraesCS4B01G071100 chr4B 93.296 179 10 1 2 178 64905451 64905273 2.220000e-66 263.0
17 TraesCS4B01G071100 chr4B 93.162 117 8 0 2345 2461 65621171 65621055 3.850000e-39 172.0
18 TraesCS4B01G071100 chr4D 86.977 2127 159 54 794 2862 44986452 44984386 0.000000e+00 2285.0
19 TraesCS4B01G071100 chr4D 95.556 45 2 0 2865 2909 44984354 44984310 4.020000e-09 73.1
20 TraesCS4B01G071100 chr4A 91.561 1339 99 9 794 2126 554629639 554630969 0.000000e+00 1834.0
21 TraesCS4B01G071100 chr4A 91.894 1209 79 7 794 2000 554558157 554559348 0.000000e+00 1672.0
22 TraesCS4B01G071100 chr4A 85.430 803 76 21 2079 2862 554559347 554560127 0.000000e+00 797.0
23 TraesCS4B01G071100 chr4A 87.316 678 53 17 2200 2862 554543867 554544526 0.000000e+00 745.0
24 TraesCS4B01G071100 chr4A 86.697 669 48 22 2223 2862 554631045 554631701 0.000000e+00 704.0
25 TraesCS4B01G071100 chr4A 95.556 45 2 0 2865 2909 554544558 554544602 4.020000e-09 73.1
26 TraesCS4B01G071100 chrUn 100.000 301 0 0 2609 2909 309938785 309938485 9.110000e-155 556.0
27 TraesCS4B01G071100 chr3D 96.094 128 4 1 675 801 22928708 22928835 1.060000e-49 207.0
28 TraesCS4B01G071100 chr7D 95.385 130 4 2 675 802 548022513 548022384 3.800000e-49 206.0
29 TraesCS4B01G071100 chr2B 95.385 130 5 1 674 802 562867200 562867329 3.800000e-49 206.0
30 TraesCS4B01G071100 chr7B 95.349 129 5 1 674 801 634277256 634277384 1.370000e-48 204.0
31 TraesCS4B01G071100 chr5B 95.349 129 5 1 675 802 703506458 703506586 1.370000e-48 204.0
32 TraesCS4B01G071100 chr2A 94.656 131 5 2 674 802 774591774 774591904 4.920000e-48 202.0
33 TraesCS4B01G071100 chr6A 93.431 137 6 3 675 810 39064981 39064847 1.770000e-47 200.0
34 TraesCS4B01G071100 chr5A 92.701 137 8 2 674 809 510537989 510537854 2.290000e-46 196.0
35 TraesCS4B01G071100 chr2D 92.701 137 7 3 666 801 562476350 562476484 8.230000e-46 195.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G071100 chr4B 65541102 65544010 2908 True 5373.00 5373 100.000000 1 2909 1 chr4B.!!$R5 2908
1 TraesCS4B01G071100 chr4B 65113830 65115911 2081 True 3531.00 3531 97.266000 826 2909 1 chr4B.!!$R3 2083
2 TraesCS4B01G071100 chr4B 65093202 65094890 1688 True 2265.00 2265 91.164000 826 2494 1 chr4B.!!$R2 1668
3 TraesCS4B01G071100 chr4B 65521810 65523498 1688 True 2265.00 2265 91.164000 826 2494 1 chr4B.!!$R4 1668
4 TraesCS4B01G071100 chr4B 65163115 65165707 2592 True 1882.50 3109 91.954000 178 2909 2 chr4B.!!$R8 2731
5 TraesCS4B01G071100 chr4B 64806677 64808849 2172 True 1645.00 2850 95.108500 824 2909 2 chr4B.!!$R6 2085
6 TraesCS4B01G071100 chr4B 65635990 65645193 9203 True 1133.50 1816 91.011250 2 2046 4 chr4B.!!$R10 2044
7 TraesCS4B01G071100 chr4B 64825574 64828137 2563 True 1042.00 1428 91.981000 178 2909 2 chr4B.!!$R7 2731
8 TraesCS4B01G071100 chr4B 65619073 65622673 3600 True 717.00 1711 92.642667 801 2862 3 chr4B.!!$R9 2061
9 TraesCS4B01G071100 chr4D 44984310 44986452 2142 True 1179.05 2285 91.266500 794 2909 2 chr4D.!!$R1 2115
10 TraesCS4B01G071100 chr4A 554629639 554631701 2062 False 1269.00 1834 89.129000 794 2862 2 chr4A.!!$F3 2068
11 TraesCS4B01G071100 chr4A 554558157 554560127 1970 False 1234.50 1672 88.662000 794 2862 2 chr4A.!!$F2 2068
12 TraesCS4B01G071100 chr4A 554543867 554544602 735 False 409.05 745 91.436000 2200 2909 2 chr4A.!!$F1 709

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
39 40 0.033504 AATCTTCCGTGACACTGCGT 59.966 50.0 3.68 0.0 0.0 5.24 F
88 89 0.035056 CAGGCGGAAATTGGAGTCCT 60.035 55.0 11.33 0.0 0.0 3.85 F
90 91 0.035439 GGCGGAAATTGGAGTCCTCA 60.035 55.0 11.33 0.0 0.0 3.86 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1051 6615 0.601841 AACGCGTAGTGGAAAGGTGG 60.602 55.000 14.46 0.0 45.78 4.61 R
1567 7143 1.082117 CCAGCGTACGTGATCCAACC 61.082 60.000 17.90 0.0 0.00 3.77 R
2010 7590 1.978580 TCCTTCAGACTTGGGACTTCC 59.021 52.381 0.00 0.0 0.00 3.46 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 6.699575 ACTCTTTTACAAGCAACACAATCT 57.300 33.333 0.00 0.00 0.00 2.40
25 26 7.100458 ACTCTTTTACAAGCAACACAATCTT 57.900 32.000 0.00 0.00 0.00 2.40
26 27 7.196331 ACTCTTTTACAAGCAACACAATCTTC 58.804 34.615 0.00 0.00 0.00 2.87
27 28 6.503524 TCTTTTACAAGCAACACAATCTTCC 58.496 36.000 0.00 0.00 0.00 3.46
28 29 4.481930 TTACAAGCAACACAATCTTCCG 57.518 40.909 0.00 0.00 0.00 4.30
29 30 2.297701 ACAAGCAACACAATCTTCCGT 58.702 42.857 0.00 0.00 0.00 4.69
30 31 2.033299 ACAAGCAACACAATCTTCCGTG 59.967 45.455 0.00 0.00 39.10 4.94
31 32 2.254546 AGCAACACAATCTTCCGTGA 57.745 45.000 0.00 0.00 36.91 4.35
32 33 1.873591 AGCAACACAATCTTCCGTGAC 59.126 47.619 0.00 0.00 36.91 3.67
33 34 1.601903 GCAACACAATCTTCCGTGACA 59.398 47.619 0.00 0.00 36.91 3.58
34 35 2.602217 GCAACACAATCTTCCGTGACAC 60.602 50.000 0.00 0.00 36.91 3.67
35 36 2.872245 CAACACAATCTTCCGTGACACT 59.128 45.455 3.68 0.00 36.91 3.55
36 37 2.483876 ACACAATCTTCCGTGACACTG 58.516 47.619 3.68 0.00 36.91 3.66
37 38 1.195448 CACAATCTTCCGTGACACTGC 59.805 52.381 3.68 0.00 35.02 4.40
38 39 0.439985 CAATCTTCCGTGACACTGCG 59.560 55.000 3.68 0.00 0.00 5.18
39 40 0.033504 AATCTTCCGTGACACTGCGT 59.966 50.000 3.68 0.00 0.00 5.24
40 41 0.667487 ATCTTCCGTGACACTGCGTG 60.667 55.000 3.68 7.07 39.75 5.34
41 42 1.299850 CTTCCGTGACACTGCGTGA 60.300 57.895 14.18 0.00 36.96 4.35
42 43 1.278172 CTTCCGTGACACTGCGTGAG 61.278 60.000 14.18 0.00 36.96 3.51
43 44 1.730451 TTCCGTGACACTGCGTGAGA 61.730 55.000 14.18 0.00 36.96 3.27
44 45 1.299850 CCGTGACACTGCGTGAGAA 60.300 57.895 14.18 0.00 36.96 2.87
45 46 0.874175 CCGTGACACTGCGTGAGAAA 60.874 55.000 14.18 0.00 36.96 2.52
46 47 1.139989 CGTGACACTGCGTGAGAAAT 58.860 50.000 14.18 0.00 36.96 2.17
47 48 2.324860 CGTGACACTGCGTGAGAAATA 58.675 47.619 14.18 0.00 36.96 1.40
48 49 2.923655 CGTGACACTGCGTGAGAAATAT 59.076 45.455 14.18 0.00 36.96 1.28
49 50 4.102649 CGTGACACTGCGTGAGAAATATA 58.897 43.478 14.18 0.00 36.96 0.86
50 51 4.205181 CGTGACACTGCGTGAGAAATATAG 59.795 45.833 14.18 0.00 36.96 1.31
51 52 4.026475 GTGACACTGCGTGAGAAATATAGC 60.026 45.833 14.18 0.00 36.96 2.97
52 53 3.458189 ACACTGCGTGAGAAATATAGCC 58.542 45.455 14.18 0.00 36.96 3.93
53 54 3.118775 ACACTGCGTGAGAAATATAGCCA 60.119 43.478 14.18 0.00 36.96 4.75
54 55 3.492383 CACTGCGTGAGAAATATAGCCAG 59.508 47.826 3.04 0.00 35.23 4.85
55 56 2.478134 CTGCGTGAGAAATATAGCCAGC 59.522 50.000 0.00 0.00 0.00 4.85
56 57 2.103094 TGCGTGAGAAATATAGCCAGCT 59.897 45.455 0.00 0.00 0.00 4.24
57 58 3.320826 TGCGTGAGAAATATAGCCAGCTA 59.679 43.478 1.10 1.10 0.00 3.32
58 59 4.202212 TGCGTGAGAAATATAGCCAGCTAA 60.202 41.667 3.02 0.00 31.73 3.09
59 60 4.150804 GCGTGAGAAATATAGCCAGCTAAC 59.849 45.833 3.02 0.00 31.73 2.34
60 61 5.289595 CGTGAGAAATATAGCCAGCTAACA 58.710 41.667 3.02 0.00 31.73 2.41
61 62 5.175856 CGTGAGAAATATAGCCAGCTAACAC 59.824 44.000 3.02 5.43 31.73 3.32
62 63 6.284459 GTGAGAAATATAGCCAGCTAACACT 58.716 40.000 3.02 0.13 31.73 3.55
63 64 6.763610 GTGAGAAATATAGCCAGCTAACACTT 59.236 38.462 3.02 0.00 31.73 3.16
64 65 6.986817 TGAGAAATATAGCCAGCTAACACTTC 59.013 38.462 3.02 5.09 31.73 3.01
65 66 7.130681 AGAAATATAGCCAGCTAACACTTCT 57.869 36.000 3.02 7.04 31.73 2.85
66 67 6.989169 AGAAATATAGCCAGCTAACACTTCTG 59.011 38.462 3.02 0.00 31.73 3.02
67 68 6.485830 AATATAGCCAGCTAACACTTCTGA 57.514 37.500 3.02 0.00 31.73 3.27
68 69 4.826274 ATAGCCAGCTAACACTTCTGAA 57.174 40.909 3.02 0.00 31.73 3.02
69 70 2.772287 AGCCAGCTAACACTTCTGAAC 58.228 47.619 0.00 0.00 0.00 3.18
70 71 2.104792 AGCCAGCTAACACTTCTGAACA 59.895 45.455 0.00 0.00 0.00 3.18
71 72 2.481952 GCCAGCTAACACTTCTGAACAG 59.518 50.000 0.00 0.00 0.00 3.16
72 73 3.070018 CCAGCTAACACTTCTGAACAGG 58.930 50.000 1.93 0.00 0.00 4.00
73 74 2.481952 CAGCTAACACTTCTGAACAGGC 59.518 50.000 1.93 0.00 0.00 4.85
74 75 1.461127 GCTAACACTTCTGAACAGGCG 59.539 52.381 1.93 0.00 0.00 5.52
75 76 2.069273 CTAACACTTCTGAACAGGCGG 58.931 52.381 1.93 0.00 0.00 6.13
76 77 0.468226 AACACTTCTGAACAGGCGGA 59.532 50.000 1.93 0.00 0.00 5.54
77 78 0.468226 ACACTTCTGAACAGGCGGAA 59.532 50.000 1.93 0.00 0.00 4.30
78 79 1.134220 ACACTTCTGAACAGGCGGAAA 60.134 47.619 1.93 0.00 33.09 3.13
79 80 2.154462 CACTTCTGAACAGGCGGAAAT 58.846 47.619 1.93 0.00 33.09 2.17
80 81 2.554032 CACTTCTGAACAGGCGGAAATT 59.446 45.455 1.93 0.00 33.09 1.82
81 82 2.554032 ACTTCTGAACAGGCGGAAATTG 59.446 45.455 1.93 0.00 33.09 2.32
82 83 1.533625 TCTGAACAGGCGGAAATTGG 58.466 50.000 1.93 0.00 0.00 3.16
83 84 1.073125 TCTGAACAGGCGGAAATTGGA 59.927 47.619 1.93 0.00 0.00 3.53
84 85 1.470098 CTGAACAGGCGGAAATTGGAG 59.530 52.381 0.00 0.00 0.00 3.86
85 86 1.202879 TGAACAGGCGGAAATTGGAGT 60.203 47.619 0.00 0.00 0.00 3.85
86 87 1.468914 GAACAGGCGGAAATTGGAGTC 59.531 52.381 0.00 0.00 0.00 3.36
87 88 0.322546 ACAGGCGGAAATTGGAGTCC 60.323 55.000 0.73 0.73 0.00 3.85
88 89 0.035056 CAGGCGGAAATTGGAGTCCT 60.035 55.000 11.33 0.00 0.00 3.85
89 90 0.253327 AGGCGGAAATTGGAGTCCTC 59.747 55.000 11.33 0.00 0.00 3.71
90 91 0.035439 GGCGGAAATTGGAGTCCTCA 60.035 55.000 11.33 0.00 0.00 3.86
91 92 1.408822 GGCGGAAATTGGAGTCCTCAT 60.409 52.381 11.33 0.00 0.00 2.90
92 93 1.943340 GCGGAAATTGGAGTCCTCATC 59.057 52.381 11.33 3.70 0.00 2.92
93 94 2.565841 CGGAAATTGGAGTCCTCATCC 58.434 52.381 11.33 11.48 37.35 3.51
94 95 2.092968 CGGAAATTGGAGTCCTCATCCA 60.093 50.000 11.33 0.00 45.15 3.41
98 99 3.815717 TGGAGTCCTCATCCAGGTT 57.184 52.632 11.33 0.00 41.96 3.50
99 100 1.573108 TGGAGTCCTCATCCAGGTTC 58.427 55.000 11.33 0.00 41.96 3.62
100 101 1.203300 TGGAGTCCTCATCCAGGTTCA 60.203 52.381 11.33 0.00 41.96 3.18
101 102 1.909302 GGAGTCCTCATCCAGGTTCAA 59.091 52.381 0.41 0.00 43.95 2.69
102 103 2.305927 GGAGTCCTCATCCAGGTTCAAA 59.694 50.000 0.41 0.00 43.95 2.69
103 104 3.244911 GGAGTCCTCATCCAGGTTCAAAA 60.245 47.826 0.41 0.00 43.95 2.44
104 105 4.568592 GGAGTCCTCATCCAGGTTCAAAAT 60.569 45.833 0.41 0.00 43.95 1.82
105 106 4.338879 AGTCCTCATCCAGGTTCAAAATG 58.661 43.478 0.00 0.00 43.95 2.32
106 107 3.445096 GTCCTCATCCAGGTTCAAAATGG 59.555 47.826 0.00 0.00 43.95 3.16
107 108 2.167075 CCTCATCCAGGTTCAAAATGGC 59.833 50.000 0.00 0.00 37.53 4.40
108 109 1.818060 TCATCCAGGTTCAAAATGGCG 59.182 47.619 0.00 0.00 33.92 5.69
109 110 1.818060 CATCCAGGTTCAAAATGGCGA 59.182 47.619 0.00 0.00 33.92 5.54
110 111 2.214376 TCCAGGTTCAAAATGGCGAT 57.786 45.000 0.00 0.00 33.92 4.58
111 112 2.091541 TCCAGGTTCAAAATGGCGATC 58.908 47.619 0.00 0.00 33.92 3.69
112 113 1.202177 CCAGGTTCAAAATGGCGATCG 60.202 52.381 11.69 11.69 0.00 3.69
113 114 0.451783 AGGTTCAAAATGGCGATCGC 59.548 50.000 31.52 31.52 41.06 4.58
114 115 0.170116 GGTTCAAAATGGCGATCGCA 59.830 50.000 38.00 25.19 44.11 5.10
115 116 1.202290 GGTTCAAAATGGCGATCGCAT 60.202 47.619 38.00 26.16 44.11 4.73
116 117 2.032799 GGTTCAAAATGGCGATCGCATA 59.967 45.455 38.00 27.22 44.11 3.14
117 118 3.035942 GTTCAAAATGGCGATCGCATAC 58.964 45.455 38.00 23.05 44.11 2.39
118 119 2.284190 TCAAAATGGCGATCGCATACA 58.716 42.857 38.00 27.60 44.11 2.29
119 120 2.680339 TCAAAATGGCGATCGCATACAA 59.320 40.909 38.00 19.55 44.11 2.41
120 121 2.755836 AAATGGCGATCGCATACAAC 57.244 45.000 38.00 21.62 44.11 3.32
121 122 1.662517 AATGGCGATCGCATACAACA 58.337 45.000 38.00 26.20 44.11 3.33
122 123 1.662517 ATGGCGATCGCATACAACAA 58.337 45.000 38.00 14.85 44.11 2.83
123 124 1.443802 TGGCGATCGCATACAACAAA 58.556 45.000 38.00 11.25 44.11 2.83
124 125 2.013400 TGGCGATCGCATACAACAAAT 58.987 42.857 38.00 0.00 44.11 2.32
125 126 2.421775 TGGCGATCGCATACAACAAATT 59.578 40.909 38.00 0.00 44.11 1.82
126 127 3.035942 GGCGATCGCATACAACAAATTC 58.964 45.455 38.00 14.69 44.11 2.17
127 128 3.486708 GGCGATCGCATACAACAAATTCA 60.487 43.478 38.00 0.00 44.11 2.57
128 129 3.478516 GCGATCGCATACAACAAATTCAC 59.521 43.478 33.89 0.00 41.49 3.18
129 130 4.727734 GCGATCGCATACAACAAATTCACT 60.728 41.667 33.89 0.00 41.49 3.41
130 131 4.725280 CGATCGCATACAACAAATTCACTG 59.275 41.667 0.26 0.00 0.00 3.66
131 132 5.445806 CGATCGCATACAACAAATTCACTGA 60.446 40.000 0.26 0.00 0.00 3.41
132 133 5.878332 TCGCATACAACAAATTCACTGAT 57.122 34.783 0.00 0.00 0.00 2.90
133 134 5.868257 TCGCATACAACAAATTCACTGATC 58.132 37.500 0.00 0.00 0.00 2.92
134 135 5.643348 TCGCATACAACAAATTCACTGATCT 59.357 36.000 0.00 0.00 0.00 2.75
135 136 6.816140 TCGCATACAACAAATTCACTGATCTA 59.184 34.615 0.00 0.00 0.00 1.98
136 137 7.333174 TCGCATACAACAAATTCACTGATCTAA 59.667 33.333 0.00 0.00 0.00 2.10
137 138 7.962373 CGCATACAACAAATTCACTGATCTAAA 59.038 33.333 0.00 0.00 0.00 1.85
138 139 9.065871 GCATACAACAAATTCACTGATCTAAAC 57.934 33.333 0.00 0.00 0.00 2.01
141 142 7.651808 ACAACAAATTCACTGATCTAAACAGG 58.348 34.615 0.00 0.00 39.38 4.00
142 143 6.259550 ACAAATTCACTGATCTAAACAGGC 57.740 37.500 0.00 0.00 39.38 4.85
143 144 5.769662 ACAAATTCACTGATCTAAACAGGCA 59.230 36.000 0.00 0.00 39.38 4.75
144 145 6.072286 ACAAATTCACTGATCTAAACAGGCAG 60.072 38.462 0.00 0.00 39.38 4.85
145 146 3.616956 TCACTGATCTAAACAGGCAGG 57.383 47.619 0.00 0.00 39.38 4.85
146 147 3.173151 TCACTGATCTAAACAGGCAGGA 58.827 45.455 0.00 0.00 39.38 3.86
147 148 3.582647 TCACTGATCTAAACAGGCAGGAA 59.417 43.478 0.00 0.00 39.38 3.36
148 149 4.225942 TCACTGATCTAAACAGGCAGGAAT 59.774 41.667 0.00 0.00 39.38 3.01
149 150 4.946157 CACTGATCTAAACAGGCAGGAATT 59.054 41.667 0.00 0.00 39.38 2.17
150 151 4.946157 ACTGATCTAAACAGGCAGGAATTG 59.054 41.667 0.00 0.00 39.38 2.32
151 152 4.272489 TGATCTAAACAGGCAGGAATTGG 58.728 43.478 0.00 0.00 0.00 3.16
152 153 4.018506 TGATCTAAACAGGCAGGAATTGGA 60.019 41.667 0.00 0.00 0.00 3.53
153 154 3.955471 TCTAAACAGGCAGGAATTGGAG 58.045 45.455 0.00 0.00 0.00 3.86
154 155 2.683211 AAACAGGCAGGAATTGGAGT 57.317 45.000 0.00 0.00 0.00 3.85
155 156 2.206576 AACAGGCAGGAATTGGAGTC 57.793 50.000 0.00 0.00 0.00 3.36
156 157 1.366319 ACAGGCAGGAATTGGAGTCT 58.634 50.000 0.00 0.00 0.00 3.24
157 158 1.707427 ACAGGCAGGAATTGGAGTCTT 59.293 47.619 0.00 0.00 0.00 3.01
158 159 2.089980 CAGGCAGGAATTGGAGTCTTG 58.910 52.381 0.00 0.00 0.00 3.02
159 160 0.813821 GGCAGGAATTGGAGTCTTGC 59.186 55.000 4.25 4.25 44.84 4.01
160 161 0.449388 GCAGGAATTGGAGTCTTGCG 59.551 55.000 0.00 0.00 38.18 4.85
161 162 1.945819 GCAGGAATTGGAGTCTTGCGA 60.946 52.381 0.00 0.00 38.18 5.10
162 163 1.734465 CAGGAATTGGAGTCTTGCGAC 59.266 52.381 0.00 0.00 40.54 5.19
163 164 1.347707 AGGAATTGGAGTCTTGCGACA 59.652 47.619 0.00 0.00 42.73 4.35
164 165 2.151202 GGAATTGGAGTCTTGCGACAA 58.849 47.619 0.00 0.00 42.73 3.18
165 166 2.749621 GGAATTGGAGTCTTGCGACAAT 59.250 45.455 0.00 0.00 42.73 2.71
166 167 3.426695 GGAATTGGAGTCTTGCGACAATG 60.427 47.826 0.00 0.00 42.73 2.82
167 168 2.254546 TTGGAGTCTTGCGACAATGT 57.745 45.000 0.00 0.00 42.73 2.71
168 169 1.795768 TGGAGTCTTGCGACAATGTC 58.204 50.000 2.75 2.75 42.73 3.06
169 170 1.079503 GGAGTCTTGCGACAATGTCC 58.920 55.000 7.91 1.54 42.73 4.02
170 171 1.079503 GAGTCTTGCGACAATGTCCC 58.920 55.000 7.91 0.00 42.73 4.46
171 172 0.321653 AGTCTTGCGACAATGTCCCC 60.322 55.000 7.91 0.00 42.73 4.81
172 173 0.321653 GTCTTGCGACAATGTCCCCT 60.322 55.000 7.91 0.00 39.98 4.79
173 174 0.036388 TCTTGCGACAATGTCCCCTC 60.036 55.000 7.91 0.00 0.00 4.30
174 175 1.002624 TTGCGACAATGTCCCCTCC 60.003 57.895 7.91 0.00 0.00 4.30
175 176 1.488705 TTGCGACAATGTCCCCTCCT 61.489 55.000 7.91 0.00 0.00 3.69
176 177 1.450312 GCGACAATGTCCCCTCCTG 60.450 63.158 7.91 0.00 0.00 3.86
248 249 1.016627 CCATGTTGGCGGACATACTG 58.983 55.000 6.07 0.00 38.15 2.74
306 307 2.095212 GTGCTAGCCTTGGCAGTAAAAC 60.095 50.000 13.29 0.00 41.81 2.43
362 363 2.370281 ACATGTCACTACTTGCTCGG 57.630 50.000 0.00 0.00 34.85 4.63
395 396 4.695928 AGTCTTTTTCTTTCCGTATCCAGC 59.304 41.667 0.00 0.00 0.00 4.85
396 397 3.682858 TCTTTTTCTTTCCGTATCCAGCG 59.317 43.478 0.00 0.00 0.00 5.18
405 406 1.651987 CGTATCCAGCGGACAACATT 58.348 50.000 0.00 0.00 32.98 2.71
430 431 1.061131 CTCGTCATTTTGCACGCCTAG 59.939 52.381 0.00 0.00 35.93 3.02
454 455 7.154656 AGCTTTGAAAGTTTAAAATAGGCCTG 58.845 34.615 17.99 0.00 0.00 4.85
485 486 3.609373 CCGTTGCTTATGTTTTGATGCAG 59.391 43.478 0.00 0.00 0.00 4.41
504 505 3.569701 GCAGGTCTTTGTTCAATCAGGAA 59.430 43.478 0.00 0.00 0.00 3.36
545 555 3.057946 TGTCTCTCACGATTGTCTCTGTG 60.058 47.826 0.00 0.00 32.91 3.66
554 564 4.516698 ACGATTGTCTCTGTGAAATGCTTT 59.483 37.500 0.00 0.00 0.00 3.51
611 621 1.815757 ACTTGGTGGTAGGTGGTCTT 58.184 50.000 0.00 0.00 0.00 3.01
613 623 1.003233 CTTGGTGGTAGGTGGTCTTCC 59.997 57.143 0.00 0.00 33.97 3.46
621 631 0.771755 AGGTGGTCTTCCCTTTGTCC 59.228 55.000 0.00 0.00 0.00 4.02
638 648 0.741915 TCCAGCGACCAAAAACAACC 59.258 50.000 0.00 0.00 0.00 3.77
642 652 0.249280 GCGACCAAAAACAACCCCAG 60.249 55.000 0.00 0.00 0.00 4.45
659 669 4.083565 CCCCAGGAAATTCTTTTTACGGA 58.916 43.478 0.00 0.00 0.00 4.69
681 691 6.814076 GAAGTACCGTATCACTTCAAGATG 57.186 41.667 9.07 0.00 46.45 2.90
683 693 6.716934 AGTACCGTATCACTTCAAGATGAT 57.283 37.500 0.00 0.00 38.99 2.45
684 694 7.818997 AGTACCGTATCACTTCAAGATGATA 57.181 36.000 0.00 0.00 36.87 2.15
685 695 8.410673 AGTACCGTATCACTTCAAGATGATAT 57.589 34.615 10.85 2.23 39.40 1.63
686 696 8.300286 AGTACCGTATCACTTCAAGATGATATG 58.700 37.037 15.48 15.48 41.49 1.78
687 697 5.928839 ACCGTATCACTTCAAGATGATATGC 59.071 40.000 16.30 6.02 40.91 3.14
688 698 5.349817 CCGTATCACTTCAAGATGATATGCC 59.650 44.000 16.30 5.57 40.91 4.40
689 699 5.061435 CGTATCACTTCAAGATGATATGCCG 59.939 44.000 12.45 8.71 39.40 5.69
690 700 3.732212 TCACTTCAAGATGATATGCCGG 58.268 45.455 0.00 0.00 0.00 6.13
691 701 2.225019 CACTTCAAGATGATATGCCGGC 59.775 50.000 22.73 22.73 0.00 6.13
692 702 2.105477 ACTTCAAGATGATATGCCGGCT 59.895 45.455 29.70 15.76 0.00 5.52
693 703 2.936919 TCAAGATGATATGCCGGCTT 57.063 45.000 29.70 24.47 0.00 4.35
694 704 4.202357 ACTTCAAGATGATATGCCGGCTTA 60.202 41.667 29.70 25.95 0.00 3.09
695 705 3.930336 TCAAGATGATATGCCGGCTTAG 58.070 45.455 29.70 11.66 0.00 2.18
696 706 3.324846 TCAAGATGATATGCCGGCTTAGT 59.675 43.478 29.70 15.20 0.00 2.24
697 707 3.601443 AGATGATATGCCGGCTTAGTC 57.399 47.619 29.70 21.82 0.00 2.59
698 708 3.169099 AGATGATATGCCGGCTTAGTCT 58.831 45.455 29.70 23.43 0.00 3.24
699 709 3.580458 AGATGATATGCCGGCTTAGTCTT 59.420 43.478 29.70 19.48 0.00 3.01
700 710 3.838244 TGATATGCCGGCTTAGTCTTT 57.162 42.857 29.70 10.12 0.00 2.52
701 711 3.728845 TGATATGCCGGCTTAGTCTTTC 58.271 45.455 29.70 18.59 0.00 2.62
702 712 2.218953 TATGCCGGCTTAGTCTTTCG 57.781 50.000 29.70 0.00 0.00 3.46
703 713 0.462047 ATGCCGGCTTAGTCTTTCGG 60.462 55.000 29.70 0.00 43.13 4.30
704 714 1.217244 GCCGGCTTAGTCTTTCGGA 59.783 57.895 22.15 0.00 42.94 4.55
705 715 0.806492 GCCGGCTTAGTCTTTCGGAG 60.806 60.000 22.15 0.00 42.94 4.63
706 716 0.179108 CCGGCTTAGTCTTTCGGAGG 60.179 60.000 0.00 0.00 42.94 4.30
707 717 0.531200 CGGCTTAGTCTTTCGGAGGT 59.469 55.000 0.00 0.00 0.00 3.85
708 718 1.736032 CGGCTTAGTCTTTCGGAGGTG 60.736 57.143 0.00 0.00 0.00 4.00
709 719 1.360820 GCTTAGTCTTTCGGAGGTGC 58.639 55.000 0.00 0.00 0.00 5.01
710 720 1.066787 GCTTAGTCTTTCGGAGGTGCT 60.067 52.381 0.00 0.00 0.00 4.40
711 721 2.882324 CTTAGTCTTTCGGAGGTGCTC 58.118 52.381 0.00 0.00 0.00 4.26
712 722 1.919240 TAGTCTTTCGGAGGTGCTCA 58.081 50.000 0.00 0.00 31.08 4.26
713 723 1.270907 AGTCTTTCGGAGGTGCTCAT 58.729 50.000 0.00 0.00 31.08 2.90
714 724 2.457598 AGTCTTTCGGAGGTGCTCATA 58.542 47.619 0.00 0.00 31.08 2.15
715 725 2.428890 AGTCTTTCGGAGGTGCTCATAG 59.571 50.000 0.00 0.00 31.08 2.23
716 726 1.757118 TCTTTCGGAGGTGCTCATAGG 59.243 52.381 0.00 0.00 31.08 2.57
717 727 1.757118 CTTTCGGAGGTGCTCATAGGA 59.243 52.381 0.00 0.00 31.08 2.94
718 728 2.088104 TTCGGAGGTGCTCATAGGAT 57.912 50.000 0.00 0.00 31.08 3.24
719 729 2.971901 TCGGAGGTGCTCATAGGATA 57.028 50.000 0.00 0.00 31.08 2.59
720 730 2.796557 TCGGAGGTGCTCATAGGATAG 58.203 52.381 0.00 0.00 31.08 2.08
721 731 1.821753 CGGAGGTGCTCATAGGATAGG 59.178 57.143 0.00 0.00 31.08 2.57
722 732 2.183679 GGAGGTGCTCATAGGATAGGG 58.816 57.143 0.00 0.00 31.08 3.53
723 733 2.493687 GGAGGTGCTCATAGGATAGGGT 60.494 54.545 0.00 0.00 31.08 4.34
724 734 2.564947 GAGGTGCTCATAGGATAGGGTG 59.435 54.545 0.00 0.00 0.00 4.61
725 735 2.090494 AGGTGCTCATAGGATAGGGTGT 60.090 50.000 0.00 0.00 0.00 4.16
726 736 2.037772 GGTGCTCATAGGATAGGGTGTG 59.962 54.545 0.00 0.00 0.00 3.82
727 737 1.694150 TGCTCATAGGATAGGGTGTGC 59.306 52.381 0.00 0.00 0.00 4.57
728 738 1.337260 GCTCATAGGATAGGGTGTGCG 60.337 57.143 0.00 0.00 0.00 5.34
729 739 1.964223 CTCATAGGATAGGGTGTGCGT 59.036 52.381 0.00 0.00 0.00 5.24
730 740 1.686587 TCATAGGATAGGGTGTGCGTG 59.313 52.381 0.00 0.00 0.00 5.34
731 741 1.412710 CATAGGATAGGGTGTGCGTGT 59.587 52.381 0.00 0.00 0.00 4.49
732 742 0.821517 TAGGATAGGGTGTGCGTGTG 59.178 55.000 0.00 0.00 0.00 3.82
733 743 1.192146 AGGATAGGGTGTGCGTGTGT 61.192 55.000 0.00 0.00 0.00 3.72
734 744 1.019278 GGATAGGGTGTGCGTGTGTG 61.019 60.000 0.00 0.00 0.00 3.82
735 745 1.635663 GATAGGGTGTGCGTGTGTGC 61.636 60.000 0.00 0.00 0.00 4.57
738 748 3.871574 GGTGTGCGTGTGTGCGTT 61.872 61.111 0.00 0.00 37.81 4.84
739 749 2.350760 GTGTGCGTGTGTGCGTTC 60.351 61.111 0.00 0.00 37.81 3.95
740 750 2.815647 TGTGCGTGTGTGCGTTCA 60.816 55.556 0.00 0.00 37.81 3.18
741 751 2.176926 TGTGCGTGTGTGCGTTCAT 61.177 52.632 0.00 0.00 37.81 2.57
742 752 0.876342 TGTGCGTGTGTGCGTTCATA 60.876 50.000 0.00 0.00 37.81 2.15
743 753 0.179250 GTGCGTGTGTGCGTTCATAG 60.179 55.000 0.00 0.00 37.81 2.23
744 754 0.319125 TGCGTGTGTGCGTTCATAGA 60.319 50.000 0.00 0.00 37.81 1.98
745 755 0.366871 GCGTGTGTGCGTTCATAGAG 59.633 55.000 0.00 0.00 0.00 2.43
746 756 0.992072 CGTGTGTGCGTTCATAGAGG 59.008 55.000 0.00 0.00 0.00 3.69
747 757 1.668919 CGTGTGTGCGTTCATAGAGGT 60.669 52.381 0.00 0.00 0.00 3.85
748 758 1.726791 GTGTGTGCGTTCATAGAGGTG 59.273 52.381 0.00 0.00 0.00 4.00
749 759 1.616374 TGTGTGCGTTCATAGAGGTGA 59.384 47.619 0.00 0.00 0.00 4.02
750 760 2.263077 GTGTGCGTTCATAGAGGTGAG 58.737 52.381 0.00 0.00 0.00 3.51
751 761 1.893137 TGTGCGTTCATAGAGGTGAGT 59.107 47.619 0.00 0.00 0.00 3.41
752 762 2.263077 GTGCGTTCATAGAGGTGAGTG 58.737 52.381 0.00 0.00 0.00 3.51
753 763 1.893137 TGCGTTCATAGAGGTGAGTGT 59.107 47.619 0.00 0.00 0.00 3.55
754 764 3.086282 TGCGTTCATAGAGGTGAGTGTA 58.914 45.455 0.00 0.00 0.00 2.90
755 765 3.699538 TGCGTTCATAGAGGTGAGTGTAT 59.300 43.478 0.00 0.00 0.00 2.29
756 766 4.045104 GCGTTCATAGAGGTGAGTGTATG 58.955 47.826 0.00 0.00 0.00 2.39
757 767 4.045104 CGTTCATAGAGGTGAGTGTATGC 58.955 47.826 0.00 0.00 0.00 3.14
758 768 3.990318 TCATAGAGGTGAGTGTATGCG 57.010 47.619 0.00 0.00 0.00 4.73
759 769 3.288092 TCATAGAGGTGAGTGTATGCGT 58.712 45.455 0.00 0.00 0.00 5.24
760 770 3.066760 TCATAGAGGTGAGTGTATGCGTG 59.933 47.826 0.00 0.00 0.00 5.34
761 771 1.257743 AGAGGTGAGTGTATGCGTGT 58.742 50.000 0.00 0.00 0.00 4.49
762 772 1.067565 AGAGGTGAGTGTATGCGTGTG 60.068 52.381 0.00 0.00 0.00 3.82
763 773 0.679505 AGGTGAGTGTATGCGTGTGT 59.320 50.000 0.00 0.00 0.00 3.72
764 774 1.890489 AGGTGAGTGTATGCGTGTGTA 59.110 47.619 0.00 0.00 0.00 2.90
765 775 2.496070 AGGTGAGTGTATGCGTGTGTAT 59.504 45.455 0.00 0.00 0.00 2.29
766 776 3.697542 AGGTGAGTGTATGCGTGTGTATA 59.302 43.478 0.00 0.00 0.00 1.47
767 777 4.341235 AGGTGAGTGTATGCGTGTGTATAT 59.659 41.667 0.00 0.00 0.00 0.86
768 778 4.444388 GGTGAGTGTATGCGTGTGTATATG 59.556 45.833 0.00 0.00 0.00 1.78
769 779 5.278604 GTGAGTGTATGCGTGTGTATATGA 58.721 41.667 0.00 0.00 0.00 2.15
770 780 5.399596 GTGAGTGTATGCGTGTGTATATGAG 59.600 44.000 0.00 0.00 0.00 2.90
771 781 4.299155 AGTGTATGCGTGTGTATATGAGC 58.701 43.478 0.00 0.00 0.00 4.26
772 782 3.119628 GTGTATGCGTGTGTATATGAGCG 59.880 47.826 0.00 0.00 0.00 5.03
773 783 2.509052 ATGCGTGTGTATATGAGCGT 57.491 45.000 0.00 0.00 0.00 5.07
774 784 2.287393 TGCGTGTGTATATGAGCGTT 57.713 45.000 0.00 0.00 0.00 4.84
775 785 2.612604 TGCGTGTGTATATGAGCGTTT 58.387 42.857 0.00 0.00 0.00 3.60
776 786 2.347150 TGCGTGTGTATATGAGCGTTTG 59.653 45.455 0.00 0.00 0.00 2.93
777 787 2.347452 GCGTGTGTATATGAGCGTTTGT 59.653 45.455 0.00 0.00 0.00 2.83
778 788 3.780957 GCGTGTGTATATGAGCGTTTGTG 60.781 47.826 0.00 0.00 0.00 3.33
779 789 3.366724 CGTGTGTATATGAGCGTTTGTGT 59.633 43.478 0.00 0.00 0.00 3.72
780 790 4.490319 CGTGTGTATATGAGCGTTTGTGTC 60.490 45.833 0.00 0.00 0.00 3.67
781 791 4.625742 GTGTGTATATGAGCGTTTGTGTCT 59.374 41.667 0.00 0.00 0.00 3.41
782 792 4.625311 TGTGTATATGAGCGTTTGTGTCTG 59.375 41.667 0.00 0.00 0.00 3.51
783 793 4.625742 GTGTATATGAGCGTTTGTGTCTGT 59.374 41.667 0.00 0.00 0.00 3.41
784 794 5.803461 GTGTATATGAGCGTTTGTGTCTGTA 59.197 40.000 0.00 0.00 0.00 2.74
785 795 5.803461 TGTATATGAGCGTTTGTGTCTGTAC 59.197 40.000 0.00 0.00 0.00 2.90
786 796 2.882927 TGAGCGTTTGTGTCTGTACT 57.117 45.000 0.00 0.00 0.00 2.73
787 797 2.469826 TGAGCGTTTGTGTCTGTACTG 58.530 47.619 0.00 0.00 0.00 2.74
788 798 2.100087 TGAGCGTTTGTGTCTGTACTGA 59.900 45.455 0.00 0.00 0.00 3.41
789 799 3.243737 TGAGCGTTTGTGTCTGTACTGAT 60.244 43.478 5.69 0.00 0.00 2.90
790 800 3.059884 AGCGTTTGTGTCTGTACTGATG 58.940 45.455 5.69 0.00 0.00 3.07
791 801 2.800544 GCGTTTGTGTCTGTACTGATGT 59.199 45.455 5.69 0.00 0.00 3.06
792 802 3.247648 GCGTTTGTGTCTGTACTGATGTT 59.752 43.478 5.69 0.00 0.00 2.71
793 803 4.446385 GCGTTTGTGTCTGTACTGATGTTA 59.554 41.667 5.69 0.00 0.00 2.41
794 804 5.050634 GCGTTTGTGTCTGTACTGATGTTAA 60.051 40.000 5.69 0.00 0.00 2.01
795 805 6.510478 GCGTTTGTGTCTGTACTGATGTTAAA 60.510 38.462 5.69 3.77 0.00 1.52
796 806 7.403421 CGTTTGTGTCTGTACTGATGTTAAAA 58.597 34.615 5.69 1.59 0.00 1.52
797 807 7.906010 CGTTTGTGTCTGTACTGATGTTAAAAA 59.094 33.333 5.69 0.00 0.00 1.94
835 845 1.086634 CCACGCTGCTTAGCTTCTCC 61.087 60.000 5.60 0.00 0.00 3.71
872 6419 0.675208 TGTCGCACCACCGCAATATT 60.675 50.000 0.00 0.00 0.00 1.28
910 6457 0.392729 ACTACGACTCCACTCCCTCG 60.393 60.000 0.00 0.00 0.00 4.63
1040 6604 4.128388 CCCAATGTTTCCGCCGCC 62.128 66.667 0.00 0.00 0.00 6.13
1041 6605 4.474846 CCAATGTTTCCGCCGCCG 62.475 66.667 0.00 0.00 0.00 6.46
1115 6679 0.035534 TACCATGCACCAATGTCGCT 60.036 50.000 0.00 0.00 0.00 4.93
1171 6735 0.534203 GTGGGCGTCCAACTTCAAGA 60.534 55.000 12.16 0.00 46.04 3.02
1182 6746 1.068474 ACTTCAAGAACGAATCGGCG 58.932 50.000 7.80 0.00 37.29 6.46
1272 6836 4.052518 CCCAGCCAGGACCCCAAG 62.053 72.222 0.00 0.00 41.22 3.61
1715 7291 2.700371 TCTATGATGTCGCCAAGATGGT 59.300 45.455 0.00 0.00 40.46 3.55
1916 7493 1.045911 GGCCTGCACTAGCTAGGTCT 61.046 60.000 24.35 0.79 39.22 3.85
2010 7590 5.152623 TGGTAACTCTGATCAAGTCCTTG 57.847 43.478 9.89 0.47 38.72 3.61
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
3 4 6.503524 GGAAGATTGTGTTGCTTGTAAAAGA 58.496 36.000 0.00 0.00 0.00 2.52
4 5 5.399301 CGGAAGATTGTGTTGCTTGTAAAAG 59.601 40.000 0.00 0.00 0.00 2.27
5 6 5.163602 ACGGAAGATTGTGTTGCTTGTAAAA 60.164 36.000 0.00 0.00 0.00 1.52
7 8 3.880490 ACGGAAGATTGTGTTGCTTGTAA 59.120 39.130 0.00 0.00 0.00 2.41
9 10 2.033299 CACGGAAGATTGTGTTGCTTGT 59.967 45.455 0.00 0.00 0.00 3.16
10 11 2.290367 TCACGGAAGATTGTGTTGCTTG 59.710 45.455 0.00 0.00 37.38 4.01
11 12 2.290641 GTCACGGAAGATTGTGTTGCTT 59.709 45.455 0.00 0.00 37.38 3.91
12 13 1.873591 GTCACGGAAGATTGTGTTGCT 59.126 47.619 0.00 0.00 37.38 3.91
13 14 1.601903 TGTCACGGAAGATTGTGTTGC 59.398 47.619 0.00 0.00 37.38 4.17
14 15 2.872245 AGTGTCACGGAAGATTGTGTTG 59.128 45.455 0.00 0.00 37.38 3.33
15 16 2.872245 CAGTGTCACGGAAGATTGTGTT 59.128 45.455 0.00 0.00 37.38 3.32
16 17 2.483876 CAGTGTCACGGAAGATTGTGT 58.516 47.619 0.00 0.00 37.38 3.72
17 18 1.195448 GCAGTGTCACGGAAGATTGTG 59.805 52.381 7.35 0.00 37.44 3.33
18 19 1.512926 GCAGTGTCACGGAAGATTGT 58.487 50.000 7.35 0.00 0.00 2.71
19 20 0.439985 CGCAGTGTCACGGAAGATTG 59.560 55.000 7.35 0.00 0.00 2.67
20 21 0.033504 ACGCAGTGTCACGGAAGATT 59.966 50.000 7.35 0.00 42.51 2.40
21 22 1.666011 ACGCAGTGTCACGGAAGAT 59.334 52.632 7.35 0.00 42.51 2.40
22 23 3.125607 ACGCAGTGTCACGGAAGA 58.874 55.556 7.35 0.00 42.51 2.87
34 35 2.478134 GCTGGCTATATTTCTCACGCAG 59.522 50.000 0.00 0.00 0.00 5.18
35 36 2.103094 AGCTGGCTATATTTCTCACGCA 59.897 45.455 0.00 0.00 0.00 5.24
36 37 2.760374 AGCTGGCTATATTTCTCACGC 58.240 47.619 0.00 0.00 0.00 5.34
37 38 5.175856 GTGTTAGCTGGCTATATTTCTCACG 59.824 44.000 0.00 0.00 0.00 4.35
38 39 6.284459 AGTGTTAGCTGGCTATATTTCTCAC 58.716 40.000 0.00 5.40 0.00 3.51
39 40 6.485830 AGTGTTAGCTGGCTATATTTCTCA 57.514 37.500 0.00 0.00 0.00 3.27
40 41 7.170658 CAGAAGTGTTAGCTGGCTATATTTCTC 59.829 40.741 15.22 6.29 29.08 2.87
41 42 6.989169 CAGAAGTGTTAGCTGGCTATATTTCT 59.011 38.462 0.00 9.96 30.28 2.52
42 43 6.986817 TCAGAAGTGTTAGCTGGCTATATTTC 59.013 38.462 0.00 8.24 0.00 2.17
43 44 6.889198 TCAGAAGTGTTAGCTGGCTATATTT 58.111 36.000 0.00 0.26 0.00 1.40
44 45 6.485830 TCAGAAGTGTTAGCTGGCTATATT 57.514 37.500 0.00 0.00 0.00 1.28
45 46 6.127054 TGTTCAGAAGTGTTAGCTGGCTATAT 60.127 38.462 0.00 0.00 0.00 0.86
46 47 5.186992 TGTTCAGAAGTGTTAGCTGGCTATA 59.813 40.000 0.00 0.00 0.00 1.31
47 48 4.020218 TGTTCAGAAGTGTTAGCTGGCTAT 60.020 41.667 0.00 0.00 0.00 2.97
48 49 3.323691 TGTTCAGAAGTGTTAGCTGGCTA 59.676 43.478 0.00 0.00 0.00 3.93
49 50 2.104792 TGTTCAGAAGTGTTAGCTGGCT 59.895 45.455 0.00 0.00 0.00 4.75
50 51 2.481952 CTGTTCAGAAGTGTTAGCTGGC 59.518 50.000 0.00 0.00 0.00 4.85
51 52 3.070018 CCTGTTCAGAAGTGTTAGCTGG 58.930 50.000 0.00 0.00 0.00 4.85
52 53 2.481952 GCCTGTTCAGAAGTGTTAGCTG 59.518 50.000 0.00 0.00 0.00 4.24
53 54 2.772287 GCCTGTTCAGAAGTGTTAGCT 58.228 47.619 1.00 0.00 0.00 3.32
54 55 1.461127 CGCCTGTTCAGAAGTGTTAGC 59.539 52.381 1.00 0.00 0.00 3.09
55 56 2.069273 CCGCCTGTTCAGAAGTGTTAG 58.931 52.381 1.00 0.00 0.00 2.34
56 57 1.689813 TCCGCCTGTTCAGAAGTGTTA 59.310 47.619 1.00 0.00 0.00 2.41
57 58 0.468226 TCCGCCTGTTCAGAAGTGTT 59.532 50.000 1.00 0.00 0.00 3.32
58 59 0.468226 TTCCGCCTGTTCAGAAGTGT 59.532 50.000 1.00 0.00 0.00 3.55
59 60 1.593196 TTTCCGCCTGTTCAGAAGTG 58.407 50.000 1.00 0.00 0.00 3.16
60 61 2.554032 CAATTTCCGCCTGTTCAGAAGT 59.446 45.455 1.00 0.00 0.00 3.01
61 62 2.095059 CCAATTTCCGCCTGTTCAGAAG 60.095 50.000 1.00 0.00 0.00 2.85
62 63 1.885887 CCAATTTCCGCCTGTTCAGAA 59.114 47.619 1.00 0.00 0.00 3.02
63 64 1.073125 TCCAATTTCCGCCTGTTCAGA 59.927 47.619 1.00 0.00 0.00 3.27
64 65 1.470098 CTCCAATTTCCGCCTGTTCAG 59.530 52.381 0.00 0.00 0.00 3.02
65 66 1.202879 ACTCCAATTTCCGCCTGTTCA 60.203 47.619 0.00 0.00 0.00 3.18
66 67 1.468914 GACTCCAATTTCCGCCTGTTC 59.531 52.381 0.00 0.00 0.00 3.18
67 68 1.534729 GACTCCAATTTCCGCCTGTT 58.465 50.000 0.00 0.00 0.00 3.16
68 69 0.322546 GGACTCCAATTTCCGCCTGT 60.323 55.000 0.00 0.00 0.00 4.00
69 70 0.035056 AGGACTCCAATTTCCGCCTG 60.035 55.000 0.00 0.00 36.95 4.85
70 71 0.253327 GAGGACTCCAATTTCCGCCT 59.747 55.000 0.00 0.00 36.95 5.52
71 72 0.035439 TGAGGACTCCAATTTCCGCC 60.035 55.000 0.00 0.00 36.95 6.13
72 73 1.943340 GATGAGGACTCCAATTTCCGC 59.057 52.381 0.00 0.00 36.95 5.54
73 74 2.092968 TGGATGAGGACTCCAATTTCCG 60.093 50.000 0.00 0.00 39.83 4.30
74 75 3.549794 CTGGATGAGGACTCCAATTTCC 58.450 50.000 0.00 0.00 42.12 3.13
75 76 3.054065 ACCTGGATGAGGACTCCAATTTC 60.054 47.826 0.00 0.00 46.33 2.17
76 77 2.922283 ACCTGGATGAGGACTCCAATTT 59.078 45.455 0.00 0.00 46.33 1.82
77 78 2.566746 ACCTGGATGAGGACTCCAATT 58.433 47.619 0.00 0.00 46.33 2.32
78 79 2.277008 ACCTGGATGAGGACTCCAAT 57.723 50.000 0.00 0.00 46.33 3.16
79 80 1.909302 GAACCTGGATGAGGACTCCAA 59.091 52.381 0.00 0.00 46.33 3.53
80 81 1.203300 TGAACCTGGATGAGGACTCCA 60.203 52.381 0.00 0.00 46.33 3.86
81 82 1.573108 TGAACCTGGATGAGGACTCC 58.427 55.000 0.00 0.00 46.33 3.85
82 83 3.703001 TTTGAACCTGGATGAGGACTC 57.297 47.619 0.00 0.00 46.33 3.36
83 84 4.338879 CATTTTGAACCTGGATGAGGACT 58.661 43.478 0.00 0.00 46.33 3.85
84 85 3.445096 CCATTTTGAACCTGGATGAGGAC 59.555 47.826 0.00 0.00 46.33 3.85
85 86 3.700538 CCATTTTGAACCTGGATGAGGA 58.299 45.455 0.00 0.00 46.33 3.71
87 88 2.159338 CGCCATTTTGAACCTGGATGAG 60.159 50.000 0.00 0.00 31.38 2.90
88 89 1.818060 CGCCATTTTGAACCTGGATGA 59.182 47.619 0.00 0.00 31.38 2.92
89 90 1.818060 TCGCCATTTTGAACCTGGATG 59.182 47.619 0.00 0.00 31.38 3.51
90 91 2.214376 TCGCCATTTTGAACCTGGAT 57.786 45.000 0.00 0.00 31.38 3.41
91 92 2.091541 GATCGCCATTTTGAACCTGGA 58.908 47.619 0.00 0.00 31.38 3.86
92 93 1.202177 CGATCGCCATTTTGAACCTGG 60.202 52.381 0.26 0.00 0.00 4.45
93 94 1.795162 GCGATCGCCATTTTGAACCTG 60.795 52.381 29.48 0.00 34.56 4.00
94 95 0.451783 GCGATCGCCATTTTGAACCT 59.548 50.000 29.48 0.00 34.56 3.50
95 96 0.170116 TGCGATCGCCATTTTGAACC 59.830 50.000 35.12 5.83 41.09 3.62
96 97 2.193306 ATGCGATCGCCATTTTGAAC 57.807 45.000 35.12 6.37 41.09 3.18
97 98 2.680339 TGTATGCGATCGCCATTTTGAA 59.320 40.909 35.12 16.03 41.09 2.69
98 99 2.284190 TGTATGCGATCGCCATTTTGA 58.716 42.857 35.12 16.80 41.09 2.69
99 100 2.753989 TGTATGCGATCGCCATTTTG 57.246 45.000 35.12 0.00 41.09 2.44
100 101 2.421775 TGTTGTATGCGATCGCCATTTT 59.578 40.909 35.12 17.59 41.09 1.82
101 102 2.013400 TGTTGTATGCGATCGCCATTT 58.987 42.857 35.12 19.94 41.09 2.32
102 103 1.662517 TGTTGTATGCGATCGCCATT 58.337 45.000 35.12 22.32 41.09 3.16
103 104 1.662517 TTGTTGTATGCGATCGCCAT 58.337 45.000 35.12 27.69 41.09 4.40
104 105 1.443802 TTTGTTGTATGCGATCGCCA 58.556 45.000 35.12 23.61 41.09 5.69
105 106 2.755836 ATTTGTTGTATGCGATCGCC 57.244 45.000 35.12 21.26 41.09 5.54
106 107 3.478516 GTGAATTTGTTGTATGCGATCGC 59.521 43.478 32.48 32.48 42.35 4.58
107 108 4.725280 CAGTGAATTTGTTGTATGCGATCG 59.275 41.667 11.69 11.69 0.00 3.69
108 109 5.868257 TCAGTGAATTTGTTGTATGCGATC 58.132 37.500 0.00 0.00 0.00 3.69
109 110 5.878332 TCAGTGAATTTGTTGTATGCGAT 57.122 34.783 0.00 0.00 0.00 4.58
110 111 5.643348 AGATCAGTGAATTTGTTGTATGCGA 59.357 36.000 0.00 0.00 0.00 5.10
111 112 5.872635 AGATCAGTGAATTTGTTGTATGCG 58.127 37.500 0.00 0.00 0.00 4.73
112 113 9.065871 GTTTAGATCAGTGAATTTGTTGTATGC 57.934 33.333 0.00 0.00 0.00 3.14
115 116 8.783093 CCTGTTTAGATCAGTGAATTTGTTGTA 58.217 33.333 0.00 0.00 0.00 2.41
116 117 7.651808 CCTGTTTAGATCAGTGAATTTGTTGT 58.348 34.615 0.00 0.00 0.00 3.32
117 118 6.583806 GCCTGTTTAGATCAGTGAATTTGTTG 59.416 38.462 0.00 0.00 0.00 3.33
118 119 6.265196 TGCCTGTTTAGATCAGTGAATTTGTT 59.735 34.615 0.00 0.00 0.00 2.83
119 120 5.769662 TGCCTGTTTAGATCAGTGAATTTGT 59.230 36.000 0.00 0.00 0.00 2.83
120 121 6.258230 TGCCTGTTTAGATCAGTGAATTTG 57.742 37.500 0.00 0.00 0.00 2.32
121 122 5.416952 CCTGCCTGTTTAGATCAGTGAATTT 59.583 40.000 0.00 0.00 0.00 1.82
122 123 4.946157 CCTGCCTGTTTAGATCAGTGAATT 59.054 41.667 0.00 0.00 0.00 2.17
123 124 4.225942 TCCTGCCTGTTTAGATCAGTGAAT 59.774 41.667 0.00 0.00 0.00 2.57
124 125 3.582647 TCCTGCCTGTTTAGATCAGTGAA 59.417 43.478 0.00 0.00 0.00 3.18
125 126 3.173151 TCCTGCCTGTTTAGATCAGTGA 58.827 45.455 0.00 0.00 0.00 3.41
126 127 3.616956 TCCTGCCTGTTTAGATCAGTG 57.383 47.619 0.00 0.00 0.00 3.66
127 128 4.851639 ATTCCTGCCTGTTTAGATCAGT 57.148 40.909 0.00 0.00 0.00 3.41
128 129 4.337555 CCAATTCCTGCCTGTTTAGATCAG 59.662 45.833 0.00 0.00 0.00 2.90
129 130 4.018506 TCCAATTCCTGCCTGTTTAGATCA 60.019 41.667 0.00 0.00 0.00 2.92
130 131 4.526970 TCCAATTCCTGCCTGTTTAGATC 58.473 43.478 0.00 0.00 0.00 2.75
131 132 4.018050 ACTCCAATTCCTGCCTGTTTAGAT 60.018 41.667 0.00 0.00 0.00 1.98
132 133 3.330701 ACTCCAATTCCTGCCTGTTTAGA 59.669 43.478 0.00 0.00 0.00 2.10
133 134 3.690460 ACTCCAATTCCTGCCTGTTTAG 58.310 45.455 0.00 0.00 0.00 1.85
134 135 3.330701 AGACTCCAATTCCTGCCTGTTTA 59.669 43.478 0.00 0.00 0.00 2.01
135 136 2.108952 AGACTCCAATTCCTGCCTGTTT 59.891 45.455 0.00 0.00 0.00 2.83
136 137 1.707427 AGACTCCAATTCCTGCCTGTT 59.293 47.619 0.00 0.00 0.00 3.16
137 138 1.366319 AGACTCCAATTCCTGCCTGT 58.634 50.000 0.00 0.00 0.00 4.00
138 139 2.089980 CAAGACTCCAATTCCTGCCTG 58.910 52.381 0.00 0.00 0.00 4.85
139 140 1.615384 GCAAGACTCCAATTCCTGCCT 60.615 52.381 0.00 0.00 0.00 4.75
140 141 0.813821 GCAAGACTCCAATTCCTGCC 59.186 55.000 0.00 0.00 0.00 4.85
141 142 0.449388 CGCAAGACTCCAATTCCTGC 59.551 55.000 0.00 0.00 43.02 4.85
142 143 2.099141 TCGCAAGACTCCAATTCCTG 57.901 50.000 0.00 0.00 45.01 3.86
154 155 0.036388 GAGGGGACATTGTCGCAAGA 60.036 55.000 28.36 0.00 45.38 3.02
155 156 1.026718 GGAGGGGACATTGTCGCAAG 61.027 60.000 28.36 0.00 45.38 4.01
156 157 1.002624 GGAGGGGACATTGTCGCAA 60.003 57.895 28.36 0.00 45.38 4.85
157 158 1.918293 AGGAGGGGACATTGTCGCA 60.918 57.895 28.36 0.00 45.38 5.10
158 159 1.450312 CAGGAGGGGACATTGTCGC 60.450 63.158 21.93 21.93 43.35 5.19
159 160 1.450312 GCAGGAGGGGACATTGTCG 60.450 63.158 10.56 0.00 32.65 4.35
160 161 0.329596 AAGCAGGAGGGGACATTGTC 59.670 55.000 8.34 8.34 0.00 3.18
161 162 0.329596 GAAGCAGGAGGGGACATTGT 59.670 55.000 0.00 0.00 0.00 2.71
162 163 0.622665 AGAAGCAGGAGGGGACATTG 59.377 55.000 0.00 0.00 0.00 2.82
163 164 1.283321 GAAGAAGCAGGAGGGGACATT 59.717 52.381 0.00 0.00 0.00 2.71
164 165 0.915364 GAAGAAGCAGGAGGGGACAT 59.085 55.000 0.00 0.00 0.00 3.06
165 166 0.178891 AGAAGAAGCAGGAGGGGACA 60.179 55.000 0.00 0.00 0.00 4.02
166 167 0.988063 AAGAAGAAGCAGGAGGGGAC 59.012 55.000 0.00 0.00 0.00 4.46
167 168 1.203364 AGAAGAAGAAGCAGGAGGGGA 60.203 52.381 0.00 0.00 0.00 4.81
168 169 1.284313 AGAAGAAGAAGCAGGAGGGG 58.716 55.000 0.00 0.00 0.00 4.79
169 170 2.571202 AGAAGAAGAAGAAGCAGGAGGG 59.429 50.000 0.00 0.00 0.00 4.30
170 171 3.979101 AGAAGAAGAAGAAGCAGGAGG 57.021 47.619 0.00 0.00 0.00 4.30
171 172 5.047092 AGAGAAGAAGAAGAAGAAGCAGGAG 60.047 44.000 0.00 0.00 0.00 3.69
172 173 4.837860 AGAGAAGAAGAAGAAGAAGCAGGA 59.162 41.667 0.00 0.00 0.00 3.86
173 174 5.151297 AGAGAAGAAGAAGAAGAAGCAGG 57.849 43.478 0.00 0.00 0.00 4.85
174 175 6.222389 TGAAGAGAAGAAGAAGAAGAAGCAG 58.778 40.000 0.00 0.00 0.00 4.24
175 176 6.166984 TGAAGAGAAGAAGAAGAAGAAGCA 57.833 37.500 0.00 0.00 0.00 3.91
176 177 6.347644 GCTTGAAGAGAAGAAGAAGAAGAAGC 60.348 42.308 0.00 0.00 0.00 3.86
222 223 1.068753 CCGCCAACATGGTTGCAAA 59.931 52.632 7.67 0.00 40.46 3.68
248 249 5.096443 AGAAGTGAGGATCCTGAACATTC 57.904 43.478 22.02 18.96 0.00 2.67
253 254 4.080695 CCATGAAGAAGTGAGGATCCTGAA 60.081 45.833 22.02 3.97 0.00 3.02
306 307 0.165944 GCAAAGTGAATGTCCGTCGG 59.834 55.000 4.39 4.39 0.00 4.79
392 393 1.398390 GAGCCTTAATGTTGTCCGCTG 59.602 52.381 0.00 0.00 0.00 5.18
395 396 1.659098 GACGAGCCTTAATGTTGTCCG 59.341 52.381 0.00 0.00 0.00 4.79
396 397 2.695359 TGACGAGCCTTAATGTTGTCC 58.305 47.619 0.00 0.00 0.00 4.02
397 398 4.946784 AATGACGAGCCTTAATGTTGTC 57.053 40.909 0.00 0.00 0.00 3.18
398 399 5.460646 CAAAATGACGAGCCTTAATGTTGT 58.539 37.500 0.00 0.00 0.00 3.32
399 400 4.324402 GCAAAATGACGAGCCTTAATGTTG 59.676 41.667 0.00 0.00 0.00 3.33
400 401 4.022416 TGCAAAATGACGAGCCTTAATGTT 60.022 37.500 0.00 0.00 0.00 2.71
401 402 3.505680 TGCAAAATGACGAGCCTTAATGT 59.494 39.130 0.00 0.00 0.00 2.71
405 406 1.463056 CGTGCAAAATGACGAGCCTTA 59.537 47.619 0.00 0.00 37.81 2.69
430 431 6.929049 ACAGGCCTATTTTAAACTTTCAAAGC 59.071 34.615 3.98 0.00 0.00 3.51
454 455 6.673154 AAACATAAGCAACGGGAATAGTAC 57.327 37.500 0.00 0.00 0.00 2.73
485 486 6.149129 AGTTTTCCTGATTGAACAAAGACC 57.851 37.500 0.00 0.00 0.00 3.85
504 505 7.290813 AGAGACACTGGATAAGGAAAAAGTTT 58.709 34.615 0.00 0.00 0.00 2.66
534 544 7.945134 ACTTAAAAGCATTTCACAGAGACAAT 58.055 30.769 0.00 0.00 37.28 2.71
592 602 1.697982 GAAGACCACCTACCACCAAGT 59.302 52.381 0.00 0.00 0.00 3.16
593 603 1.003233 GGAAGACCACCTACCACCAAG 59.997 57.143 0.00 0.00 35.97 3.61
600 610 2.290134 GGACAAAGGGAAGACCACCTAC 60.290 54.545 0.00 0.00 43.89 3.18
611 621 1.701031 TTGGTCGCTGGACAAAGGGA 61.701 55.000 0.00 0.00 45.28 4.20
613 623 1.028905 TTTTGGTCGCTGGACAAAGG 58.971 50.000 0.00 0.00 45.28 3.11
621 631 0.249280 GGGGTTGTTTTTGGTCGCTG 60.249 55.000 0.00 0.00 0.00 5.18
638 648 5.243060 ACTTCCGTAAAAAGAATTTCCTGGG 59.757 40.000 0.00 0.00 37.28 4.45
659 669 6.525578 TCATCTTGAAGTGATACGGTACTT 57.474 37.500 0.00 0.00 39.67 2.24
669 679 3.732212 CCGGCATATCATCTTGAAGTGA 58.268 45.455 0.00 0.00 0.00 3.41
677 687 3.169099 AGACTAAGCCGGCATATCATCT 58.831 45.455 31.54 19.69 0.00 2.90
680 690 3.728845 GAAAGACTAAGCCGGCATATCA 58.271 45.455 31.54 7.27 0.00 2.15
681 691 2.731976 CGAAAGACTAAGCCGGCATATC 59.268 50.000 31.54 19.70 0.00 1.63
683 693 1.202486 CCGAAAGACTAAGCCGGCATA 60.202 52.381 31.54 21.29 33.47 3.14
684 694 0.462047 CCGAAAGACTAAGCCGGCAT 60.462 55.000 31.54 21.32 33.47 4.40
685 695 1.079405 CCGAAAGACTAAGCCGGCA 60.079 57.895 31.54 7.98 33.47 5.69
686 696 0.806492 CTCCGAAAGACTAAGCCGGC 60.806 60.000 21.89 21.89 39.96 6.13
687 697 0.179108 CCTCCGAAAGACTAAGCCGG 60.179 60.000 0.00 0.00 41.36 6.13
688 698 0.531200 ACCTCCGAAAGACTAAGCCG 59.469 55.000 0.00 0.00 0.00 5.52
689 699 2.007547 GCACCTCCGAAAGACTAAGCC 61.008 57.143 0.00 0.00 0.00 4.35
690 700 1.066787 AGCACCTCCGAAAGACTAAGC 60.067 52.381 0.00 0.00 0.00 3.09
691 701 2.231478 TGAGCACCTCCGAAAGACTAAG 59.769 50.000 0.00 0.00 0.00 2.18
692 702 2.244695 TGAGCACCTCCGAAAGACTAA 58.755 47.619 0.00 0.00 0.00 2.24
693 703 1.919240 TGAGCACCTCCGAAAGACTA 58.081 50.000 0.00 0.00 0.00 2.59
694 704 1.270907 ATGAGCACCTCCGAAAGACT 58.729 50.000 0.00 0.00 0.00 3.24
695 705 2.482142 CCTATGAGCACCTCCGAAAGAC 60.482 54.545 0.00 0.00 0.00 3.01
696 706 1.757118 CCTATGAGCACCTCCGAAAGA 59.243 52.381 0.00 0.00 0.00 2.52
697 707 1.757118 TCCTATGAGCACCTCCGAAAG 59.243 52.381 0.00 0.00 0.00 2.62
698 708 1.860641 TCCTATGAGCACCTCCGAAA 58.139 50.000 0.00 0.00 0.00 3.46
699 709 2.088104 ATCCTATGAGCACCTCCGAA 57.912 50.000 0.00 0.00 0.00 4.30
700 710 2.555448 CCTATCCTATGAGCACCTCCGA 60.555 54.545 0.00 0.00 0.00 4.55
701 711 1.821753 CCTATCCTATGAGCACCTCCG 59.178 57.143 0.00 0.00 0.00 4.63
702 712 2.183679 CCCTATCCTATGAGCACCTCC 58.816 57.143 0.00 0.00 0.00 4.30
703 713 2.564947 CACCCTATCCTATGAGCACCTC 59.435 54.545 0.00 0.00 0.00 3.85
704 714 2.090494 ACACCCTATCCTATGAGCACCT 60.090 50.000 0.00 0.00 0.00 4.00
705 715 2.037772 CACACCCTATCCTATGAGCACC 59.962 54.545 0.00 0.00 0.00 5.01
706 716 2.548920 GCACACCCTATCCTATGAGCAC 60.549 54.545 0.00 0.00 0.00 4.40
707 717 1.694150 GCACACCCTATCCTATGAGCA 59.306 52.381 0.00 0.00 0.00 4.26
708 718 1.337260 CGCACACCCTATCCTATGAGC 60.337 57.143 0.00 0.00 0.00 4.26
709 719 1.964223 ACGCACACCCTATCCTATGAG 59.036 52.381 0.00 0.00 0.00 2.90
710 720 1.686587 CACGCACACCCTATCCTATGA 59.313 52.381 0.00 0.00 0.00 2.15
711 721 1.412710 ACACGCACACCCTATCCTATG 59.587 52.381 0.00 0.00 0.00 2.23
712 722 1.412710 CACACGCACACCCTATCCTAT 59.587 52.381 0.00 0.00 0.00 2.57
713 723 0.821517 CACACGCACACCCTATCCTA 59.178 55.000 0.00 0.00 0.00 2.94
714 724 1.192146 ACACACGCACACCCTATCCT 61.192 55.000 0.00 0.00 0.00 3.24
715 725 1.019278 CACACACGCACACCCTATCC 61.019 60.000 0.00 0.00 0.00 2.59
716 726 1.635663 GCACACACGCACACCCTATC 61.636 60.000 0.00 0.00 0.00 2.08
717 727 1.671054 GCACACACGCACACCCTAT 60.671 57.895 0.00 0.00 0.00 2.57
718 728 2.280524 GCACACACGCACACCCTA 60.281 61.111 0.00 0.00 0.00 3.53
721 731 3.783588 GAACGCACACACGCACACC 62.784 63.158 0.00 0.00 36.19 4.16
722 732 2.350760 GAACGCACACACGCACAC 60.351 61.111 0.00 0.00 36.19 3.82
723 733 0.876342 TATGAACGCACACACGCACA 60.876 50.000 0.00 0.00 36.19 4.57
724 734 0.179250 CTATGAACGCACACACGCAC 60.179 55.000 0.00 0.00 36.19 5.34
725 735 0.319125 TCTATGAACGCACACACGCA 60.319 50.000 0.00 0.00 36.19 5.24
726 736 0.366871 CTCTATGAACGCACACACGC 59.633 55.000 0.00 0.00 36.19 5.34
727 737 0.992072 CCTCTATGAACGCACACACG 59.008 55.000 0.00 0.00 39.50 4.49
728 738 1.726791 CACCTCTATGAACGCACACAC 59.273 52.381 0.00 0.00 0.00 3.82
729 739 1.616374 TCACCTCTATGAACGCACACA 59.384 47.619 0.00 0.00 0.00 3.72
730 740 2.263077 CTCACCTCTATGAACGCACAC 58.737 52.381 0.00 0.00 0.00 3.82
731 741 1.893137 ACTCACCTCTATGAACGCACA 59.107 47.619 0.00 0.00 0.00 4.57
732 742 2.263077 CACTCACCTCTATGAACGCAC 58.737 52.381 0.00 0.00 0.00 5.34
733 743 1.893137 ACACTCACCTCTATGAACGCA 59.107 47.619 0.00 0.00 0.00 5.24
734 744 2.656560 ACACTCACCTCTATGAACGC 57.343 50.000 0.00 0.00 0.00 4.84
735 745 4.045104 GCATACACTCACCTCTATGAACG 58.955 47.826 0.00 0.00 0.00 3.95
736 746 4.045104 CGCATACACTCACCTCTATGAAC 58.955 47.826 0.00 0.00 0.00 3.18
737 747 3.699538 ACGCATACACTCACCTCTATGAA 59.300 43.478 0.00 0.00 0.00 2.57
738 748 3.066760 CACGCATACACTCACCTCTATGA 59.933 47.826 0.00 0.00 0.00 2.15
739 749 3.181486 ACACGCATACACTCACCTCTATG 60.181 47.826 0.00 0.00 0.00 2.23
740 750 3.024547 ACACGCATACACTCACCTCTAT 58.975 45.455 0.00 0.00 0.00 1.98
741 751 2.163613 CACACGCATACACTCACCTCTA 59.836 50.000 0.00 0.00 0.00 2.43
742 752 1.067565 CACACGCATACACTCACCTCT 60.068 52.381 0.00 0.00 0.00 3.69
743 753 1.336887 ACACACGCATACACTCACCTC 60.337 52.381 0.00 0.00 0.00 3.85
744 754 0.679505 ACACACGCATACACTCACCT 59.320 50.000 0.00 0.00 0.00 4.00
745 755 2.357327 TACACACGCATACACTCACC 57.643 50.000 0.00 0.00 0.00 4.02
746 756 5.278604 TCATATACACACGCATACACTCAC 58.721 41.667 0.00 0.00 0.00 3.51
747 757 5.508200 TCATATACACACGCATACACTCA 57.492 39.130 0.00 0.00 0.00 3.41
748 758 4.383052 GCTCATATACACACGCATACACTC 59.617 45.833 0.00 0.00 0.00 3.51
749 759 4.299155 GCTCATATACACACGCATACACT 58.701 43.478 0.00 0.00 0.00 3.55
750 760 3.119628 CGCTCATATACACACGCATACAC 59.880 47.826 0.00 0.00 0.00 2.90
751 761 3.243267 ACGCTCATATACACACGCATACA 60.243 43.478 0.00 0.00 0.00 2.29
752 762 3.305964 ACGCTCATATACACACGCATAC 58.694 45.455 0.00 0.00 0.00 2.39
753 763 3.636282 ACGCTCATATACACACGCATA 57.364 42.857 0.00 0.00 0.00 3.14
754 764 2.509052 ACGCTCATATACACACGCAT 57.491 45.000 0.00 0.00 0.00 4.73
755 765 2.287393 AACGCTCATATACACACGCA 57.713 45.000 0.00 0.00 0.00 5.24
756 766 2.347452 ACAAACGCTCATATACACACGC 59.653 45.455 0.00 0.00 0.00 5.34
757 767 3.366724 ACACAAACGCTCATATACACACG 59.633 43.478 0.00 0.00 0.00 4.49
758 768 4.625742 AGACACAAACGCTCATATACACAC 59.374 41.667 0.00 0.00 0.00 3.82
759 769 4.625311 CAGACACAAACGCTCATATACACA 59.375 41.667 0.00 0.00 0.00 3.72
760 770 4.625742 ACAGACACAAACGCTCATATACAC 59.374 41.667 0.00 0.00 0.00 2.90
761 771 4.816392 ACAGACACAAACGCTCATATACA 58.184 39.130 0.00 0.00 0.00 2.29
762 772 6.020599 CAGTACAGACACAAACGCTCATATAC 60.021 42.308 0.00 0.00 0.00 1.47
763 773 6.033966 CAGTACAGACACAAACGCTCATATA 58.966 40.000 0.00 0.00 0.00 0.86
764 774 4.864806 CAGTACAGACACAAACGCTCATAT 59.135 41.667 0.00 0.00 0.00 1.78
765 775 4.022676 TCAGTACAGACACAAACGCTCATA 60.023 41.667 0.00 0.00 0.00 2.15
766 776 3.059884 CAGTACAGACACAAACGCTCAT 58.940 45.455 0.00 0.00 0.00 2.90
767 777 2.100087 TCAGTACAGACACAAACGCTCA 59.900 45.455 0.00 0.00 0.00 4.26
768 778 2.739292 TCAGTACAGACACAAACGCTC 58.261 47.619 0.00 0.00 0.00 5.03
769 779 2.882927 TCAGTACAGACACAAACGCT 57.117 45.000 0.00 0.00 0.00 5.07
770 780 2.800544 ACATCAGTACAGACACAAACGC 59.199 45.455 0.00 0.00 0.00 4.84
771 781 6.519353 TTAACATCAGTACAGACACAAACG 57.481 37.500 0.00 0.00 0.00 3.60
797 807 3.564225 GTGGGTCATCAGAACTCGTTTTT 59.436 43.478 0.00 0.00 0.00 1.94
798 808 3.139077 GTGGGTCATCAGAACTCGTTTT 58.861 45.455 0.00 0.00 0.00 2.43
835 845 3.864686 CGGACCGGCTGCAATTCG 61.865 66.667 5.81 0.00 0.00 3.34
872 6419 0.247460 TCGTAGTCGGACGAGGAAGA 59.753 55.000 10.51 0.45 46.43 2.87
910 6457 3.699038 TGTGTTGGCATTATAAGGAAGGC 59.301 43.478 0.32 0.00 35.41 4.35
1046 6610 3.599285 TAGTGGAAAGGTGGCGGCG 62.599 63.158 0.51 0.51 0.00 6.46
1047 6611 2.038837 GTAGTGGAAAGGTGGCGGC 61.039 63.158 0.00 0.00 0.00 6.53
1048 6612 1.740296 CGTAGTGGAAAGGTGGCGG 60.740 63.158 0.00 0.00 0.00 6.13
1049 6613 2.388232 GCGTAGTGGAAAGGTGGCG 61.388 63.158 0.00 0.00 0.00 5.69
1050 6614 2.388232 CGCGTAGTGGAAAGGTGGC 61.388 63.158 0.00 0.00 0.00 5.01
1051 6615 0.601841 AACGCGTAGTGGAAAGGTGG 60.602 55.000 14.46 0.00 45.78 4.61
1115 6679 4.501714 GCGACGACGGCCATACCA 62.502 66.667 9.67 0.00 39.03 3.25
1171 6735 1.447314 GGAGGTTCGCCGATTCGTT 60.447 57.895 5.20 0.00 43.66 3.85
1202 6766 2.872925 CGACGTACTGGGCGTTCG 60.873 66.667 0.00 0.00 43.04 3.95
1567 7143 1.082117 CCAGCGTACGTGATCCAACC 61.082 60.000 17.90 0.00 0.00 3.77
1825 7401 2.334946 GCCGCATGAAGACCTGCAA 61.335 57.895 0.00 0.00 37.47 4.08
1916 7493 4.154737 GCTCAGCATTGTTTGTGTGAGATA 59.845 41.667 0.00 0.00 39.25 1.98
2010 7590 1.978580 TCCTTCAGACTTGGGACTTCC 59.021 52.381 0.00 0.00 0.00 3.46
2161 7770 9.234384 GCTTGAACTCTTTTTAAAAACTACTCC 57.766 33.333 9.31 0.00 0.00 3.85
2162 7771 9.783256 TGCTTGAACTCTTTTTAAAAACTACTC 57.217 29.630 9.31 5.49 0.00 2.59


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.