Multiple sequence alignment - TraesCS4B01G070500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G070500 chr4B 100.000 3920 0 0 1 3920 64699946 64696027 0.000000e+00 7239.0
1 TraesCS4B01G070500 chr4D 87.003 3470 237 86 129 3452 44748452 44745051 0.000000e+00 3712.0
2 TraesCS4B01G070500 chr4D 93.694 444 20 4 3468 3905 44744990 44744549 0.000000e+00 658.0
3 TraesCS4B01G070500 chr4A 86.511 1631 122 25 404 1996 554923591 554925161 0.000000e+00 1703.0
4 TraesCS4B01G070500 chr4A 94.152 855 30 8 2003 2838 554925200 554926053 0.000000e+00 1284.0
5 TraesCS4B01G070500 chr4A 92.494 453 29 4 3468 3920 554926617 554927064 0.000000e+00 643.0
6 TraesCS4B01G070500 chr4A 87.097 217 11 7 2830 3036 554926075 554926284 3.050000e-56 230.0
7 TraesCS4B01G070500 chr4A 95.588 68 3 0 3372 3439 554926474 554926541 4.140000e-20 110.0
8 TraesCS4B01G070500 chr6D 84.862 218 27 5 3468 3683 173902841 173902628 8.530000e-52 215.0
9 TraesCS4B01G070500 chr6A 100.000 33 0 0 3317 3349 15581616 15581584 1.180000e-05 62.1
10 TraesCS4B01G070500 chr3D 87.273 55 5 1 3307 3359 610348933 610348987 1.180000e-05 62.1
11 TraesCS4B01G070500 chr3D 94.737 38 1 1 3313 3349 287478528 287478491 1.520000e-04 58.4
12 TraesCS4B01G070500 chr3A 87.273 55 5 1 3307 3359 744436618 744436672 1.180000e-05 62.1
13 TraesCS4B01G070500 chr3A 94.737 38 1 1 3313 3349 377144768 377144731 1.520000e-04 58.4
14 TraesCS4B01G070500 chr3A 97.143 35 0 1 3317 3350 710277821 710277855 1.520000e-04 58.4
15 TraesCS4B01G070500 chr3B 94.737 38 1 1 3313 3349 380680410 380680373 1.520000e-04 58.4
16 TraesCS4B01G070500 chrUn 90.698 43 3 1 3321 3363 79688295 79688336 5.470000e-04 56.5
17 TraesCS4B01G070500 chr6B 90.698 43 3 1 3321 3363 714272143 714272102 5.470000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G070500 chr4B 64696027 64699946 3919 True 7239 7239 100.0000 1 3920 1 chr4B.!!$R1 3919
1 TraesCS4B01G070500 chr4D 44744549 44748452 3903 True 2185 3712 90.3485 129 3905 2 chr4D.!!$R1 3776
2 TraesCS4B01G070500 chr4A 554923591 554927064 3473 False 794 1703 91.1684 404 3920 5 chr4A.!!$F1 3516

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
667 694 0.167470 CATGTGCGCTCTTTGTGGAG 59.833 55.0 9.73 0.0 36.50 3.86 F
668 695 0.250467 ATGTGCGCTCTTTGTGGAGT 60.250 50.0 9.73 0.0 35.89 3.85 F
1675 1739 0.404040 TGGGGCAAAGAGTTCGGAAT 59.596 50.0 0.00 0.0 0.00 3.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1836 1900 0.185901 TGGCCACAGCTCCTTTCTTT 59.814 50.0 0.00 0.0 39.73 2.52 R
1860 1924 2.027561 CCGGATCCCACTGAAGTTTACA 60.028 50.0 6.06 0.0 0.00 2.41 R
3057 3225 0.036164 TTGCTAGGTGGTGCAACGAT 59.964 50.0 0.00 0.0 43.17 3.73 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 2.474410 GCCAGTACTTGCTAACACCT 57.526 50.000 11.56 0.00 0.00 4.00
20 21 2.076863 GCCAGTACTTGCTAACACCTG 58.923 52.381 11.56 0.00 0.00 4.00
21 22 2.289444 GCCAGTACTTGCTAACACCTGA 60.289 50.000 11.56 0.00 0.00 3.86
22 23 3.805807 GCCAGTACTTGCTAACACCTGAA 60.806 47.826 11.56 0.00 0.00 3.02
23 24 3.997021 CCAGTACTTGCTAACACCTGAAG 59.003 47.826 0.00 0.00 0.00 3.02
24 25 4.503296 CCAGTACTTGCTAACACCTGAAGT 60.503 45.833 0.00 0.00 0.00 3.01
25 26 5.279306 CCAGTACTTGCTAACACCTGAAGTA 60.279 44.000 0.00 0.00 0.00 2.24
26 27 6.398918 CAGTACTTGCTAACACCTGAAGTAT 58.601 40.000 0.00 0.00 33.07 2.12
27 28 6.874134 CAGTACTTGCTAACACCTGAAGTATT 59.126 38.462 0.00 0.00 33.07 1.89
28 29 8.033038 CAGTACTTGCTAACACCTGAAGTATTA 58.967 37.037 0.00 0.00 33.07 0.98
29 30 8.591072 AGTACTTGCTAACACCTGAAGTATTAA 58.409 33.333 0.00 0.00 33.07 1.40
30 31 9.211485 GTACTTGCTAACACCTGAAGTATTAAA 57.789 33.333 0.00 0.00 33.07 1.52
31 32 8.685838 ACTTGCTAACACCTGAAGTATTAAAA 57.314 30.769 0.00 0.00 0.00 1.52
32 33 9.297037 ACTTGCTAACACCTGAAGTATTAAAAT 57.703 29.630 0.00 0.00 0.00 1.82
51 52 6.639632 AAAATATGATATCAGGTGTGGTGC 57.360 37.500 11.78 0.00 0.00 5.01
52 53 2.245159 ATGATATCAGGTGTGGTGCG 57.755 50.000 11.78 0.00 0.00 5.34
53 54 1.190643 TGATATCAGGTGTGGTGCGA 58.809 50.000 0.00 0.00 0.00 5.10
54 55 1.552792 TGATATCAGGTGTGGTGCGAA 59.447 47.619 0.00 0.00 0.00 4.70
55 56 2.170397 TGATATCAGGTGTGGTGCGAAT 59.830 45.455 0.00 0.00 0.00 3.34
56 57 2.779755 TATCAGGTGTGGTGCGAATT 57.220 45.000 0.00 0.00 0.00 2.17
57 58 1.909700 ATCAGGTGTGGTGCGAATTT 58.090 45.000 0.00 0.00 0.00 1.82
58 59 1.686355 TCAGGTGTGGTGCGAATTTT 58.314 45.000 0.00 0.00 0.00 1.82
59 60 2.028130 TCAGGTGTGGTGCGAATTTTT 58.972 42.857 0.00 0.00 0.00 1.94
60 61 2.034053 TCAGGTGTGGTGCGAATTTTTC 59.966 45.455 0.00 0.00 0.00 2.29
61 62 2.034558 CAGGTGTGGTGCGAATTTTTCT 59.965 45.455 0.00 0.00 0.00 2.52
62 63 2.693074 AGGTGTGGTGCGAATTTTTCTT 59.307 40.909 0.00 0.00 0.00 2.52
63 64 2.794350 GGTGTGGTGCGAATTTTTCTTG 59.206 45.455 0.00 0.00 0.00 3.02
64 65 2.794350 GTGTGGTGCGAATTTTTCTTGG 59.206 45.455 0.00 0.00 0.00 3.61
65 66 2.428890 TGTGGTGCGAATTTTTCTTGGT 59.571 40.909 0.00 0.00 0.00 3.67
66 67 3.118956 TGTGGTGCGAATTTTTCTTGGTT 60.119 39.130 0.00 0.00 0.00 3.67
67 68 3.245048 GTGGTGCGAATTTTTCTTGGTTG 59.755 43.478 0.00 0.00 0.00 3.77
68 69 2.799978 GGTGCGAATTTTTCTTGGTTGG 59.200 45.455 0.00 0.00 0.00 3.77
69 70 2.799978 GTGCGAATTTTTCTTGGTTGGG 59.200 45.455 0.00 0.00 0.00 4.12
70 71 2.432510 TGCGAATTTTTCTTGGTTGGGT 59.567 40.909 0.00 0.00 0.00 4.51
71 72 3.118592 TGCGAATTTTTCTTGGTTGGGTT 60.119 39.130 0.00 0.00 0.00 4.11
72 73 3.874543 GCGAATTTTTCTTGGTTGGGTTT 59.125 39.130 0.00 0.00 0.00 3.27
73 74 5.051153 GCGAATTTTTCTTGGTTGGGTTTA 58.949 37.500 0.00 0.00 0.00 2.01
74 75 5.699001 GCGAATTTTTCTTGGTTGGGTTTAT 59.301 36.000 0.00 0.00 0.00 1.40
75 76 6.869388 GCGAATTTTTCTTGGTTGGGTTTATA 59.131 34.615 0.00 0.00 0.00 0.98
76 77 7.148705 GCGAATTTTTCTTGGTTGGGTTTATAC 60.149 37.037 0.00 0.00 0.00 1.47
77 78 8.085909 CGAATTTTTCTTGGTTGGGTTTATACT 58.914 33.333 0.00 0.00 0.00 2.12
78 79 9.772973 GAATTTTTCTTGGTTGGGTTTATACTT 57.227 29.630 0.00 0.00 0.00 2.24
79 80 9.772973 AATTTTTCTTGGTTGGGTTTATACTTC 57.227 29.630 0.00 0.00 0.00 3.01
80 81 8.541899 TTTTTCTTGGTTGGGTTTATACTTCT 57.458 30.769 0.00 0.00 0.00 2.85
81 82 9.643735 TTTTTCTTGGTTGGGTTTATACTTCTA 57.356 29.630 0.00 0.00 0.00 2.10
82 83 9.816787 TTTTCTTGGTTGGGTTTATACTTCTAT 57.183 29.630 0.00 0.00 0.00 1.98
83 84 8.801882 TTCTTGGTTGGGTTTATACTTCTATG 57.198 34.615 0.00 0.00 0.00 2.23
84 85 7.924541 TCTTGGTTGGGTTTATACTTCTATGT 58.075 34.615 0.00 0.00 0.00 2.29
85 86 9.049050 TCTTGGTTGGGTTTATACTTCTATGTA 57.951 33.333 0.00 0.00 0.00 2.29
86 87 9.847224 CTTGGTTGGGTTTATACTTCTATGTAT 57.153 33.333 0.00 0.00 37.04 2.29
87 88 9.841295 TTGGTTGGGTTTATACTTCTATGTATC 57.159 33.333 0.00 0.00 35.14 2.24
88 89 9.220906 TGGTTGGGTTTATACTTCTATGTATCT 57.779 33.333 0.00 0.00 35.14 1.98
107 108 8.533569 TGTATCTTTTCCTCTTTTTCTTTGGT 57.466 30.769 0.00 0.00 0.00 3.67
108 109 8.977412 TGTATCTTTTCCTCTTTTTCTTTGGTT 58.023 29.630 0.00 0.00 0.00 3.67
150 151 5.821470 AGAGTGGATTCATATGCTGTTTCTG 59.179 40.000 0.00 0.00 0.00 3.02
165 166 3.181451 TGTTTCTGAGATGCACTTCCTGT 60.181 43.478 0.00 0.00 0.00 4.00
174 175 6.931281 TGAGATGCACTTCCTGTAAATATAGC 59.069 38.462 0.00 0.00 0.00 2.97
180 181 9.627123 TGCACTTCCTGTAAATATAGCTATTTT 57.373 29.630 12.39 13.63 38.30 1.82
195 196 3.911964 GCTATTTTATGGTAAATGGCGCG 59.088 43.478 0.00 0.00 40.51 6.86
198 199 3.617540 TTTATGGTAAATGGCGCGATG 57.382 42.857 12.10 0.00 0.00 3.84
203 204 1.128692 GGTAAATGGCGCGATGCTATC 59.871 52.381 12.10 0.00 45.06 2.08
206 207 1.230635 AATGGCGCGATGCTATCCAC 61.231 55.000 12.10 0.00 45.06 4.02
209 210 1.276844 GCGCGATGCTATCCACAAC 59.723 57.895 12.10 0.00 41.73 3.32
219 220 4.065088 TGCTATCCACAACACTGAAGTTC 58.935 43.478 0.00 0.00 0.00 3.01
231 232 5.380043 ACACTGAAGTTCCATGTCTTCATT 58.620 37.500 18.57 13.51 45.48 2.57
257 258 5.412594 TGCAGTCCATCTGATTTAACTTCAC 59.587 40.000 0.00 0.00 46.27 3.18
265 266 5.551233 TCTGATTTAACTTCACTGAGGGTG 58.449 41.667 0.00 0.00 46.60 4.61
284 285 3.368531 GGTGCTACTGACTTACTGGGAAG 60.369 52.174 0.00 0.00 0.00 3.46
288 289 3.185880 ACTGACTTACTGGGAAGCCTA 57.814 47.619 0.00 0.00 0.00 3.93
294 295 3.456277 ACTTACTGGGAAGCCTATTCTGG 59.544 47.826 0.00 0.00 0.00 3.86
295 296 1.972588 ACTGGGAAGCCTATTCTGGT 58.027 50.000 0.00 0.00 0.00 4.00
296 297 3.130734 ACTGGGAAGCCTATTCTGGTA 57.869 47.619 0.00 0.00 0.00 3.25
297 298 3.669949 ACTGGGAAGCCTATTCTGGTAT 58.330 45.455 0.00 0.00 0.00 2.73
312 313 3.316029 TCTGGTATATGCATTGCTGTTGC 59.684 43.478 3.54 0.00 40.55 4.17
321 322 3.878103 TGCATTGCTGTTGCTTTGAAAAT 59.122 34.783 10.49 0.00 40.77 1.82
323 324 5.526479 TGCATTGCTGTTGCTTTGAAAATTA 59.474 32.000 10.49 0.00 40.77 1.40
327 328 9.453325 CATTGCTGTTGCTTTGAAAATTAAAAT 57.547 25.926 0.00 0.00 40.48 1.82
399 400 6.596309 TCATTTAAAATACACATGCCACCA 57.404 33.333 0.00 0.00 0.00 4.17
417 432 5.221263 GCCACCAGATAAAACGAGAGAGATA 60.221 44.000 0.00 0.00 0.00 1.98
420 435 6.799441 CACCAGATAAAACGAGAGAGATATCG 59.201 42.308 0.00 0.00 44.36 2.92
430 445 4.674662 CGAGAGAGATATCGCTTTCACAAG 59.325 45.833 21.44 6.55 31.42 3.16
432 447 5.587289 AGAGAGATATCGCTTTCACAAGAC 58.413 41.667 10.52 0.00 30.57 3.01
438 453 0.655733 CGCTTTCACAAGACGGTTGT 59.344 50.000 0.00 0.00 30.57 3.32
447 462 3.086282 ACAAGACGGTTGTTTTTCCTGT 58.914 40.909 0.00 0.00 0.00 4.00
452 467 4.755123 AGACGGTTGTTTTTCCTGTCTATG 59.245 41.667 0.00 0.00 36.58 2.23
453 468 4.457466 ACGGTTGTTTTTCCTGTCTATGT 58.543 39.130 0.00 0.00 0.00 2.29
454 469 5.613329 ACGGTTGTTTTTCCTGTCTATGTA 58.387 37.500 0.00 0.00 0.00 2.29
455 470 5.467735 ACGGTTGTTTTTCCTGTCTATGTAC 59.532 40.000 0.00 0.00 0.00 2.90
456 471 5.106830 CGGTTGTTTTTCCTGTCTATGTACC 60.107 44.000 0.00 0.00 0.00 3.34
457 472 6.002082 GGTTGTTTTTCCTGTCTATGTACCT 58.998 40.000 0.00 0.00 0.00 3.08
458 473 7.163441 GGTTGTTTTTCCTGTCTATGTACCTA 58.837 38.462 0.00 0.00 0.00 3.08
459 474 7.118825 GGTTGTTTTTCCTGTCTATGTACCTAC 59.881 40.741 0.00 0.00 0.00 3.18
460 475 6.704310 TGTTTTTCCTGTCTATGTACCTACC 58.296 40.000 0.00 0.00 0.00 3.18
461 476 5.945144 TTTTCCTGTCTATGTACCTACCC 57.055 43.478 0.00 0.00 0.00 3.69
462 477 3.219176 TCCTGTCTATGTACCTACCCG 57.781 52.381 0.00 0.00 0.00 5.28
463 478 1.612463 CCTGTCTATGTACCTACCCGC 59.388 57.143 0.00 0.00 0.00 6.13
464 479 1.266175 CTGTCTATGTACCTACCCGCG 59.734 57.143 0.00 0.00 0.00 6.46
465 480 0.595095 GTCTATGTACCTACCCGCGG 59.405 60.000 21.04 21.04 0.00 6.46
466 481 0.473755 TCTATGTACCTACCCGCGGA 59.526 55.000 30.73 6.52 0.00 5.54
546 561 4.402616 TCCCCAATTGAACTTCTCCATT 57.597 40.909 7.12 0.00 0.00 3.16
601 616 2.549926 CAAAACTGTGGCCCTGTTTTC 58.450 47.619 25.18 3.03 46.17 2.29
621 648 1.678728 CCGCCAAGCAATTCTACTGGA 60.679 52.381 0.00 0.00 0.00 3.86
625 652 3.690460 CCAAGCAATTCTACTGGACCTT 58.310 45.455 0.00 0.00 0.00 3.50
634 661 4.202245 TCTACTGGACCTTTGTATGTGC 57.798 45.455 0.00 0.00 0.00 4.57
641 668 3.197983 GGACCTTTGTATGTGCCTAGTCT 59.802 47.826 0.00 0.00 0.00 3.24
657 684 2.977914 AGTCTATTTCACATGTGCGCT 58.022 42.857 21.38 9.67 0.00 5.92
658 685 2.932614 AGTCTATTTCACATGTGCGCTC 59.067 45.455 21.38 5.51 0.00 5.03
659 686 2.932614 GTCTATTTCACATGTGCGCTCT 59.067 45.455 21.38 6.26 0.00 4.09
660 687 3.372206 GTCTATTTCACATGTGCGCTCTT 59.628 43.478 21.38 0.00 0.00 2.85
661 688 4.002982 TCTATTTCACATGTGCGCTCTTT 58.997 39.130 21.38 4.08 0.00 2.52
662 689 2.404265 TTTCACATGTGCGCTCTTTG 57.596 45.000 21.38 10.01 0.00 2.77
663 690 1.308047 TTCACATGTGCGCTCTTTGT 58.692 45.000 21.38 10.67 0.00 2.83
664 691 0.587768 TCACATGTGCGCTCTTTGTG 59.412 50.000 26.10 26.10 0.00 3.33
665 692 0.386352 CACATGTGCGCTCTTTGTGG 60.386 55.000 25.16 14.25 0.00 4.17
666 693 0.534877 ACATGTGCGCTCTTTGTGGA 60.535 50.000 9.73 0.00 0.00 4.02
667 694 0.167470 CATGTGCGCTCTTTGTGGAG 59.833 55.000 9.73 0.00 36.50 3.86
668 695 0.250467 ATGTGCGCTCTTTGTGGAGT 60.250 50.000 9.73 0.00 35.89 3.85
669 696 1.159713 TGTGCGCTCTTTGTGGAGTG 61.160 55.000 9.73 0.00 44.06 3.51
671 698 4.047834 CGCTCTTTGTGGAGTGCA 57.952 55.556 0.00 0.00 37.10 4.57
672 699 1.864862 CGCTCTTTGTGGAGTGCAG 59.135 57.895 0.00 0.00 37.10 4.41
673 700 0.601046 CGCTCTTTGTGGAGTGCAGA 60.601 55.000 0.00 0.00 37.10 4.26
674 701 1.597742 GCTCTTTGTGGAGTGCAGAA 58.402 50.000 0.00 0.00 36.45 3.02
675 702 1.534595 GCTCTTTGTGGAGTGCAGAAG 59.465 52.381 0.00 0.00 36.45 2.85
676 703 1.534595 CTCTTTGTGGAGTGCAGAAGC 59.465 52.381 0.00 0.00 42.57 3.86
693 720 2.062971 AGCAGCCCTTGTAATGATGG 57.937 50.000 0.00 0.00 0.00 3.51
695 722 1.696063 CAGCCCTTGTAATGATGGGG 58.304 55.000 0.00 0.00 39.99 4.96
700 727 0.937304 CTTGTAATGATGGGGCGACG 59.063 55.000 0.00 0.00 0.00 5.12
703 730 0.935196 GTAATGATGGGGCGACGAAC 59.065 55.000 0.00 0.00 0.00 3.95
724 751 2.222663 CGCGATCTTGTTGTCACATCAG 60.223 50.000 0.00 0.00 31.06 2.90
727 754 4.488879 CGATCTTGTTGTCACATCAGAGA 58.511 43.478 0.00 4.32 31.06 3.10
734 761 6.298441 TGTTGTCACATCAGAGATATCCAA 57.702 37.500 0.00 0.00 0.00 3.53
754 781 5.131475 TCCAATACCTAACTACCCAATCCAC 59.869 44.000 0.00 0.00 0.00 4.02
758 785 3.263425 ACCTAACTACCCAATCCACACAG 59.737 47.826 0.00 0.00 0.00 3.66
793 820 1.815003 CTTCAGCATTCCACTTGTCCC 59.185 52.381 0.00 0.00 0.00 4.46
891 924 5.988310 ATCTGATCAATTTGGTTTCTGCA 57.012 34.783 0.00 0.00 0.00 4.41
898 931 6.907206 TCAATTTGGTTTCTGCAAAGAAAG 57.093 33.333 1.61 0.00 38.32 2.62
901 934 4.817318 TTGGTTTCTGCAAAGAAAGGTT 57.183 36.364 1.61 0.00 38.32 3.50
921 954 3.777465 TGAACTTTCGGAGTAGATCGG 57.223 47.619 0.00 0.00 37.72 4.18
933 966 7.533426 TCGGAGTAGATCGGTATATAAAAAGC 58.467 38.462 0.00 0.00 0.00 3.51
995 1028 3.706140 GCTCGGCCAACATAGACG 58.294 61.111 2.24 0.00 0.00 4.18
996 1029 1.141019 GCTCGGCCAACATAGACGA 59.859 57.895 2.24 0.00 0.00 4.20
997 1030 3.258225 CTCGGCCAACATAGACGAG 57.742 57.895 2.24 1.11 43.85 4.18
1038 1071 5.241506 CAGCTTCAGTCTTCCAAAATGGTAA 59.758 40.000 0.00 0.00 39.03 2.85
1039 1072 5.474876 AGCTTCAGTCTTCCAAAATGGTAAG 59.525 40.000 0.00 0.31 39.03 2.34
1040 1073 5.241728 GCTTCAGTCTTCCAAAATGGTAAGT 59.758 40.000 0.00 0.00 39.03 2.24
1041 1074 6.430000 GCTTCAGTCTTCCAAAATGGTAAGTA 59.570 38.462 0.00 0.00 39.03 2.24
1042 1075 7.121315 GCTTCAGTCTTCCAAAATGGTAAGTAT 59.879 37.037 0.00 0.00 39.03 2.12
1043 1076 8.934023 TTCAGTCTTCCAAAATGGTAAGTATT 57.066 30.769 0.00 0.00 39.03 1.89
1258 1308 0.603975 AGAAAGCCTGCGAGTTCACC 60.604 55.000 0.00 0.00 0.00 4.02
1259 1309 0.884704 GAAAGCCTGCGAGTTCACCA 60.885 55.000 0.00 0.00 0.00 4.17
1312 1362 1.072489 TGGAACATGAACGGCAAGGTA 59.928 47.619 0.00 0.00 0.00 3.08
1313 1363 2.290641 TGGAACATGAACGGCAAGGTAT 60.291 45.455 0.00 0.00 0.00 2.73
1323 1381 4.415881 ACGGCAAGGTATGTCATATTCA 57.584 40.909 0.00 0.00 31.20 2.57
1330 1388 5.830799 AGGTATGTCATATTCATGGCTGA 57.169 39.130 0.00 0.00 37.67 4.26
1334 1392 7.016563 AGGTATGTCATATTCATGGCTGAGTTA 59.983 37.037 0.00 0.00 37.67 2.24
1374 1435 5.885352 GGGCCATTTGCTTTGGTTTAATATT 59.115 36.000 4.39 0.00 40.92 1.28
1377 1438 6.746822 GCCATTTGCTTTGGTTTAATATTTGC 59.253 34.615 0.00 0.00 36.57 3.68
1380 1441 7.665561 TTTGCTTTGGTTTAATATTTGCTCC 57.334 32.000 0.00 0.00 0.00 4.70
1382 1443 6.630071 TGCTTTGGTTTAATATTTGCTCCTC 58.370 36.000 0.00 0.00 0.00 3.71
1385 1446 4.850680 TGGTTTAATATTTGCTCCTCCGT 58.149 39.130 0.00 0.00 0.00 4.69
1405 1466 1.002430 TGAAGATGTCTGTGCAGGACC 59.998 52.381 14.65 3.58 33.22 4.46
1542 1603 5.825593 TGTGAGGAGTCTTCAAGGTTAAT 57.174 39.130 6.51 0.00 0.00 1.40
1548 1609 7.445402 TGAGGAGTCTTCAAGGTTAATCTTTTG 59.555 37.037 1.83 0.00 0.00 2.44
1549 1610 7.518188 AGGAGTCTTCAAGGTTAATCTTTTGA 58.482 34.615 0.00 0.00 0.00 2.69
1596 1659 5.762045 ACATATTCTGAAATACGGCAATGC 58.238 37.500 0.00 0.00 30.27 3.56
1612 1676 3.120442 GCAATGCTTGTCAAATTTCAGCC 60.120 43.478 0.00 0.00 0.00 4.85
1620 1684 6.403866 TTGTCAAATTTCAGCCTGTTATGT 57.596 33.333 0.00 0.00 0.00 2.29
1656 1720 8.169977 TGCAGTCTATTCAGATGTTTCTTTTT 57.830 30.769 0.00 0.00 32.09 1.94
1675 1739 0.404040 TGGGGCAAAGAGTTCGGAAT 59.596 50.000 0.00 0.00 0.00 3.01
1694 1758 4.511826 GGAATCGTACATCAAAGGTGATCC 59.488 45.833 0.00 0.00 42.88 3.36
1699 1763 4.330074 CGTACATCAAAGGTGATCCTGTTC 59.670 45.833 0.00 0.00 42.88 3.18
1703 1767 5.940470 ACATCAAAGGTGATCCTGTTCTTAC 59.060 40.000 0.00 0.00 42.88 2.34
1707 1771 7.103641 TCAAAGGTGATCCTGTTCTTACATAC 58.896 38.462 0.00 0.00 44.35 2.39
1712 1776 6.043411 GTGATCCTGTTCTTACATACCTGAC 58.957 44.000 0.00 0.00 32.86 3.51
1730 1794 5.531287 ACCTGACTATTCTTGGTGTTGAAAC 59.469 40.000 0.00 0.00 31.15 2.78
1750 1814 8.913487 TGAAACAGCACATCTAATATGATCAT 57.087 30.769 13.81 13.81 0.00 2.45
1797 1861 3.140325 TGGACAGAAATGAAGGTGGAC 57.860 47.619 0.00 0.00 0.00 4.02
1836 1900 1.820581 CGGAGGCGTAATTGGGAGA 59.179 57.895 0.00 0.00 0.00 3.71
1860 1924 0.921896 AAGGAGCTGTGGCCATGTAT 59.078 50.000 9.72 0.00 39.73 2.29
1925 1989 2.318908 TGCAGGTTGATTTCCAGCTTT 58.681 42.857 0.00 0.00 38.12 3.51
1927 1991 3.894427 TGCAGGTTGATTTCCAGCTTTTA 59.106 39.130 0.00 0.00 38.12 1.52
1929 1993 4.021981 GCAGGTTGATTTCCAGCTTTTAGT 60.022 41.667 0.00 0.00 35.17 2.24
1935 1999 7.370383 GTTGATTTCCAGCTTTTAGTCAATCA 58.630 34.615 4.52 0.00 0.00 2.57
1963 2042 9.816787 TTTCTTATTGTTGGGTCTTATTACCTT 57.183 29.630 0.00 0.00 39.65 3.50
1986 2065 7.094805 CCTTAGTGCTAATACTGAAAGCAACAA 60.095 37.037 0.00 0.00 47.00 2.83
1987 2066 6.002062 AGTGCTAATACTGAAAGCAACAAC 57.998 37.500 0.00 0.00 47.00 3.32
1992 2071 7.594758 TGCTAATACTGAAAGCAACAACAATTC 59.405 33.333 0.00 0.00 42.96 2.17
1996 2075 6.592798 ACTGAAAGCAACAACAATTCAATG 57.407 33.333 0.00 0.00 37.60 2.82
1997 2076 6.339730 ACTGAAAGCAACAACAATTCAATGA 58.660 32.000 0.00 0.00 37.60 2.57
1998 2077 6.987992 ACTGAAAGCAACAACAATTCAATGAT 59.012 30.769 0.00 0.00 37.60 2.45
2247 2358 6.543831 AGTGTATGCTGGACCTATTCAATTTC 59.456 38.462 0.00 0.00 0.00 2.17
2270 2381 4.970662 ACATGACATAAATGCCTGACAC 57.029 40.909 0.00 0.00 0.00 3.67
2613 2742 3.480470 AGCACTTGATTGTGTTAGCAGT 58.520 40.909 0.00 0.00 39.89 4.40
2619 2748 5.237344 ACTTGATTGTGTTAGCAGTTCTGAC 59.763 40.000 3.84 0.00 32.41 3.51
2660 2789 5.838529 TCATCTTTGTCTGAAAGTACGTGA 58.161 37.500 0.00 0.00 33.76 4.35
2707 2836 9.929722 TTACAATTGACAATCGCAAGTATATTC 57.070 29.630 13.59 0.00 39.48 1.75
2716 2845 7.170489 ACAATCGCAAGTATATTCAGATGACTG 59.830 37.037 0.00 0.00 41.32 3.51
2753 2882 8.620116 AACAAAATTGTAAAGGCAAATAGCAT 57.380 26.923 0.00 0.00 42.82 3.79
2814 2943 9.423061 AGATGTAATTTGGTAAAGTCAAAATGC 57.577 29.630 0.00 0.00 37.60 3.56
2842 2971 5.178623 CCGTGTATTCATGTTGTTGTGTACT 59.821 40.000 0.00 0.00 0.00 2.73
2943 3110 5.829924 AGGAAACAGAAATACCCAGCATATG 59.170 40.000 0.00 0.00 0.00 1.78
3028 3196 5.939883 AGCAGATTCTTTATTACAGCACACA 59.060 36.000 0.00 0.00 0.00 3.72
3031 3199 7.219535 GCAGATTCTTTATTACAGCACACATTG 59.780 37.037 0.00 0.00 0.00 2.82
3050 3218 1.636519 TGTTTCCCATTGATACCCGGT 59.363 47.619 0.00 0.00 0.00 5.28
3051 3219 2.021457 GTTTCCCATTGATACCCGGTG 58.979 52.381 0.00 0.00 0.00 4.94
3052 3220 0.106918 TTCCCATTGATACCCGGTGC 60.107 55.000 0.00 0.00 0.00 5.01
3053 3221 1.225983 CCCATTGATACCCGGTGCA 59.774 57.895 0.00 0.00 0.00 4.57
3054 3222 1.101049 CCCATTGATACCCGGTGCAC 61.101 60.000 8.80 8.80 0.00 4.57
3057 3225 1.815613 CATTGATACCCGGTGCACAAA 59.184 47.619 20.43 0.00 0.00 2.83
3059 3227 1.745232 TGATACCCGGTGCACAAATC 58.255 50.000 20.43 13.01 0.00 2.17
3063 3231 1.081509 CCCGGTGCACAAATCGTTG 60.082 57.895 20.43 2.69 40.84 4.10
3069 3237 0.248825 TGCACAAATCGTTGCACCAC 60.249 50.000 0.00 0.00 38.39 4.16
3079 3247 2.853159 TTGCACCACCTAGCAATCG 58.147 52.632 0.00 0.00 44.98 3.34
3089 3257 4.437390 CCACCTAGCAATCGTTTGATCAAC 60.437 45.833 7.89 2.92 34.60 3.18
3093 3261 5.580691 CCTAGCAATCGTTTGATCAACTGTA 59.419 40.000 7.89 0.00 34.60 2.74
3096 3264 6.913170 AGCAATCGTTTGATCAACTGTAATT 58.087 32.000 7.89 1.76 34.60 1.40
3102 3281 6.037720 TCGTTTGATCAACTGTAATTGTGTGT 59.962 34.615 7.89 0.00 32.53 3.72
3122 3301 8.812329 TGTGTGTAAAATTTGTAAATCAGCAAC 58.188 29.630 0.00 0.00 0.00 4.17
3134 3313 9.926158 TTGTAAATCAGCAACATTGTTCATATT 57.074 25.926 0.00 0.00 0.00 1.28
3140 3319 4.497300 GCAACATTGTTCATATTGGTGCT 58.503 39.130 5.74 0.00 46.61 4.40
3141 3320 5.649557 GCAACATTGTTCATATTGGTGCTA 58.350 37.500 5.74 0.00 46.61 3.49
3216 3397 9.734620 CATGTTTATATTCAGGTATGTGGTTTG 57.265 33.333 0.00 0.00 0.00 2.93
3218 3399 9.521841 TGTTTATATTCAGGTATGTGGTTTGAA 57.478 29.630 0.00 0.00 32.90 2.69
3235 3416 4.953940 TTGAAGTTCAAATTGAAGGGGG 57.046 40.909 15.92 0.00 37.00 5.40
3288 3477 6.127225 TGGACAGTTTGGATTTCACAATTTCA 60.127 34.615 0.00 0.00 0.00 2.69
3293 3482 7.065563 CAGTTTGGATTTCACAATTTCAAACCA 59.934 33.333 16.00 0.00 41.60 3.67
3294 3483 7.609532 AGTTTGGATTTCACAATTTCAAACCAA 59.390 29.630 16.00 0.00 41.60 3.67
3295 3484 7.551035 TTGGATTTCACAATTTCAAACCAAG 57.449 32.000 0.00 0.00 31.53 3.61
3296 3485 6.054295 TGGATTTCACAATTTCAAACCAAGG 58.946 36.000 0.00 0.00 0.00 3.61
3319 3508 7.716612 AGGAAGGAACACAATTCTTAACTTTG 58.283 34.615 0.00 0.00 0.00 2.77
3321 3510 8.626526 GGAAGGAACACAATTCTTAACTTTGTA 58.373 33.333 0.00 0.00 32.57 2.41
3322 3511 9.447040 GAAGGAACACAATTCTTAACTTTGTAC 57.553 33.333 0.00 0.00 32.57 2.90
3324 3513 8.837389 AGGAACACAATTCTTAACTTTGTACTC 58.163 33.333 0.00 0.00 32.57 2.59
3326 3515 7.506328 ACACAATTCTTAACTTTGTACTCCC 57.494 36.000 0.00 0.00 32.57 4.30
3328 3517 7.444487 ACACAATTCTTAACTTTGTACTCCCTC 59.556 37.037 0.00 0.00 32.57 4.30
3329 3518 6.940867 ACAATTCTTAACTTTGTACTCCCTCC 59.059 38.462 0.00 0.00 32.09 4.30
3331 3520 4.410099 TCTTAACTTTGTACTCCCTCCGA 58.590 43.478 0.00 0.00 0.00 4.55
3332 3521 5.021458 TCTTAACTTTGTACTCCCTCCGAT 58.979 41.667 0.00 0.00 0.00 4.18
3333 3522 3.889520 AACTTTGTACTCCCTCCGATC 57.110 47.619 0.00 0.00 0.00 3.69
3334 3523 2.108970 ACTTTGTACTCCCTCCGATCC 58.891 52.381 0.00 0.00 0.00 3.36
3335 3524 2.108168 CTTTGTACTCCCTCCGATCCA 58.892 52.381 0.00 0.00 0.00 3.41
3336 3525 2.241281 TTGTACTCCCTCCGATCCAA 57.759 50.000 0.00 0.00 0.00 3.53
3338 3527 2.759355 TGTACTCCCTCCGATCCAAAT 58.241 47.619 0.00 0.00 0.00 2.32
3341 3530 4.717778 TGTACTCCCTCCGATCCAAATTAA 59.282 41.667 0.00 0.00 0.00 1.40
3342 3531 5.368523 TGTACTCCCTCCGATCCAAATTAAT 59.631 40.000 0.00 0.00 0.00 1.40
3343 3532 5.388599 ACTCCCTCCGATCCAAATTAATT 57.611 39.130 0.00 0.00 0.00 1.40
3344 3533 5.133221 ACTCCCTCCGATCCAAATTAATTG 58.867 41.667 0.39 0.00 38.84 2.32
3345 3534 5.104109 ACTCCCTCCGATCCAAATTAATTGA 60.104 40.000 0.39 0.00 41.85 2.57
3347 3536 5.769662 TCCCTCCGATCCAAATTAATTGATG 59.230 40.000 0.39 0.00 41.85 3.07
3348 3537 5.464168 CCTCCGATCCAAATTAATTGATGC 58.536 41.667 0.39 0.00 41.85 3.91
3349 3538 5.242393 CCTCCGATCCAAATTAATTGATGCT 59.758 40.000 0.39 0.00 41.85 3.79
3350 3539 6.239120 CCTCCGATCCAAATTAATTGATGCTT 60.239 38.462 0.39 0.00 41.85 3.91
3373 3585 8.488764 GCTTAATTTGGAATAAGCGTCTAGTAG 58.511 37.037 2.20 0.00 43.04 2.57
3442 3654 5.070685 GGTACAGAAACAAGGAAACTGGAT 58.929 41.667 0.00 0.00 42.68 3.41
3448 3662 2.876581 ACAAGGAAACTGGATGGAACC 58.123 47.619 0.00 0.00 42.68 3.62
3452 3666 1.177401 GAAACTGGATGGAACCCTGC 58.823 55.000 0.00 0.00 0.00 4.85
3453 3667 0.482446 AAACTGGATGGAACCCTGCA 59.518 50.000 0.00 0.00 0.00 4.41
3455 3669 1.751927 CTGGATGGAACCCTGCAGC 60.752 63.158 8.66 0.00 0.00 5.25
3457 3671 1.452833 GGATGGAACCCTGCAGCTC 60.453 63.158 8.66 4.13 28.83 4.09
3458 3672 1.452833 GATGGAACCCTGCAGCTCC 60.453 63.158 8.66 13.88 0.00 4.70
3459 3673 2.900671 GATGGAACCCTGCAGCTCCC 62.901 65.000 19.42 13.05 0.00 4.30
3463 3677 2.417558 GAACCCTGCAGCTCCCAGTT 62.418 60.000 8.66 4.30 0.00 3.16
3464 3678 2.011617 AACCCTGCAGCTCCCAGTTT 62.012 55.000 8.66 1.35 0.00 2.66
3466 3680 0.678048 CCCTGCAGCTCCCAGTTTAC 60.678 60.000 8.66 0.00 0.00 2.01
3470 3729 1.699634 TGCAGCTCCCAGTTTACTTCT 59.300 47.619 0.00 0.00 0.00 2.85
3531 3790 3.561143 TCTGGGCTTTCAGCTACAAAAA 58.439 40.909 0.00 0.00 41.99 1.94
3614 3873 5.395214 GGACAAAAACAGGGAAACTTGACAT 60.395 40.000 0.00 0.00 40.48 3.06
3622 3881 2.492088 GGGAAACTTGACATAACCCTGC 59.508 50.000 0.00 0.00 33.79 4.85
3663 3928 2.640826 CAACCCCCTCCTTAGTGTACAA 59.359 50.000 0.00 0.00 0.00 2.41
3670 3935 5.897824 CCCCTCCTTAGTGTACAATTCTAGA 59.102 44.000 0.00 0.00 0.00 2.43
3712 3977 3.318275 AGTTCGACGCCATAGATACACAT 59.682 43.478 0.00 0.00 0.00 3.21
3730 3995 5.139727 ACACATTCAGTCTTTTGGATGGAA 58.860 37.500 0.00 0.00 38.21 3.53
3816 4081 2.905415 TGGAGCCTGGATGTTTTCAT 57.095 45.000 0.00 0.00 43.99 2.57
3842 4107 3.491342 GCCTTCCTCTTTTCTCCAGTTT 58.509 45.455 0.00 0.00 0.00 2.66
3876 4141 2.174639 TGAAACCACTGAACACAGGGAT 59.825 45.455 0.00 0.00 37.24 3.85
3883 4148 4.637534 CCACTGAACACAGGGATATGAAAG 59.362 45.833 0.00 0.00 37.24 2.62
3892 4157 7.628234 ACACAGGGATATGAAAGGATATCATC 58.372 38.462 4.83 0.54 37.14 2.92
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.076863 CAGGTGTTAGCAAGTACTGGC 58.923 52.381 14.89 14.89 0.00 4.85
1 2 3.678056 TCAGGTGTTAGCAAGTACTGG 57.322 47.619 0.00 0.00 0.00 4.00
2 3 4.632153 ACTTCAGGTGTTAGCAAGTACTG 58.368 43.478 0.00 0.00 0.00 2.74
3 4 4.957684 ACTTCAGGTGTTAGCAAGTACT 57.042 40.909 0.00 0.00 0.00 2.73
5 6 9.781633 TTTTAATACTTCAGGTGTTAGCAAGTA 57.218 29.630 0.00 0.00 34.04 2.24
6 7 8.685838 TTTTAATACTTCAGGTGTTAGCAAGT 57.314 30.769 0.00 0.00 34.04 3.16
25 26 8.796475 GCACCACACCTGATATCATATTTTAAT 58.204 33.333 5.72 0.00 0.00 1.40
26 27 7.041440 CGCACCACACCTGATATCATATTTTAA 60.041 37.037 5.72 0.00 0.00 1.52
27 28 6.426633 CGCACCACACCTGATATCATATTTTA 59.573 38.462 5.72 0.00 0.00 1.52
28 29 5.239306 CGCACCACACCTGATATCATATTTT 59.761 40.000 5.72 0.00 0.00 1.82
29 30 4.756642 CGCACCACACCTGATATCATATTT 59.243 41.667 5.72 0.00 0.00 1.40
30 31 4.040339 TCGCACCACACCTGATATCATATT 59.960 41.667 5.72 0.00 0.00 1.28
31 32 3.578282 TCGCACCACACCTGATATCATAT 59.422 43.478 5.72 0.00 0.00 1.78
32 33 2.962421 TCGCACCACACCTGATATCATA 59.038 45.455 5.72 0.00 0.00 2.15
33 34 1.762370 TCGCACCACACCTGATATCAT 59.238 47.619 5.72 0.00 0.00 2.45
34 35 1.190643 TCGCACCACACCTGATATCA 58.809 50.000 5.07 5.07 0.00 2.15
35 36 2.309528 TTCGCACCACACCTGATATC 57.690 50.000 0.00 0.00 0.00 1.63
36 37 3.281727 AATTCGCACCACACCTGATAT 57.718 42.857 0.00 0.00 0.00 1.63
37 38 2.779755 AATTCGCACCACACCTGATA 57.220 45.000 0.00 0.00 0.00 2.15
38 39 1.909700 AAATTCGCACCACACCTGAT 58.090 45.000 0.00 0.00 0.00 2.90
39 40 1.686355 AAAATTCGCACCACACCTGA 58.314 45.000 0.00 0.00 0.00 3.86
40 41 2.034558 AGAAAAATTCGCACCACACCTG 59.965 45.455 0.00 0.00 34.02 4.00
41 42 2.306847 AGAAAAATTCGCACCACACCT 58.693 42.857 0.00 0.00 34.02 4.00
42 43 2.793278 AGAAAAATTCGCACCACACC 57.207 45.000 0.00 0.00 34.02 4.16
43 44 2.794350 CCAAGAAAAATTCGCACCACAC 59.206 45.455 0.00 0.00 34.02 3.82
44 45 2.428890 ACCAAGAAAAATTCGCACCACA 59.571 40.909 0.00 0.00 34.02 4.17
45 46 3.092334 ACCAAGAAAAATTCGCACCAC 57.908 42.857 0.00 0.00 34.02 4.16
46 47 3.452474 CAACCAAGAAAAATTCGCACCA 58.548 40.909 0.00 0.00 34.02 4.17
47 48 2.799978 CCAACCAAGAAAAATTCGCACC 59.200 45.455 0.00 0.00 34.02 5.01
48 49 2.799978 CCCAACCAAGAAAAATTCGCAC 59.200 45.455 0.00 0.00 34.02 5.34
49 50 2.432510 ACCCAACCAAGAAAAATTCGCA 59.567 40.909 0.00 0.00 34.02 5.10
50 51 3.106242 ACCCAACCAAGAAAAATTCGC 57.894 42.857 0.00 0.00 34.02 4.70
51 52 8.085909 AGTATAAACCCAACCAAGAAAAATTCG 58.914 33.333 0.00 0.00 34.02 3.34
52 53 9.772973 AAGTATAAACCCAACCAAGAAAAATTC 57.227 29.630 0.00 0.00 0.00 2.17
53 54 9.772973 GAAGTATAAACCCAACCAAGAAAAATT 57.227 29.630 0.00 0.00 0.00 1.82
54 55 9.154632 AGAAGTATAAACCCAACCAAGAAAAAT 57.845 29.630 0.00 0.00 0.00 1.82
55 56 8.541899 AGAAGTATAAACCCAACCAAGAAAAA 57.458 30.769 0.00 0.00 0.00 1.94
56 57 9.816787 ATAGAAGTATAAACCCAACCAAGAAAA 57.183 29.630 0.00 0.00 0.00 2.29
57 58 9.238368 CATAGAAGTATAAACCCAACCAAGAAA 57.762 33.333 0.00 0.00 0.00 2.52
58 59 8.387813 ACATAGAAGTATAAACCCAACCAAGAA 58.612 33.333 0.00 0.00 0.00 2.52
59 60 7.924541 ACATAGAAGTATAAACCCAACCAAGA 58.075 34.615 0.00 0.00 0.00 3.02
60 61 9.847224 ATACATAGAAGTATAAACCCAACCAAG 57.153 33.333 0.00 0.00 33.12 3.61
61 62 9.841295 GATACATAGAAGTATAAACCCAACCAA 57.159 33.333 0.00 0.00 34.95 3.67
62 63 9.220906 AGATACATAGAAGTATAAACCCAACCA 57.779 33.333 0.00 0.00 34.95 3.67
81 82 9.147732 ACCAAAGAAAAAGAGGAAAAGATACAT 57.852 29.630 0.00 0.00 0.00 2.29
82 83 8.533569 ACCAAAGAAAAAGAGGAAAAGATACA 57.466 30.769 0.00 0.00 0.00 2.29
116 117 7.823310 GCATATGAATCCACTCTCAGAATATGT 59.177 37.037 6.97 0.00 0.00 2.29
117 118 8.041919 AGCATATGAATCCACTCTCAGAATATG 58.958 37.037 6.97 0.00 0.00 1.78
118 119 8.041919 CAGCATATGAATCCACTCTCAGAATAT 58.958 37.037 6.97 0.00 0.00 1.28
119 120 7.015974 ACAGCATATGAATCCACTCTCAGAATA 59.984 37.037 6.97 0.00 0.00 1.75
120 121 6.183361 ACAGCATATGAATCCACTCTCAGAAT 60.183 38.462 6.97 0.00 0.00 2.40
121 122 5.129980 ACAGCATATGAATCCACTCTCAGAA 59.870 40.000 6.97 0.00 0.00 3.02
122 123 4.652881 ACAGCATATGAATCCACTCTCAGA 59.347 41.667 6.97 0.00 0.00 3.27
123 124 4.958509 ACAGCATATGAATCCACTCTCAG 58.041 43.478 6.97 0.00 0.00 3.35
124 125 5.363562 AACAGCATATGAATCCACTCTCA 57.636 39.130 6.97 0.00 0.00 3.27
125 126 6.018098 CAGAAACAGCATATGAATCCACTCTC 60.018 42.308 6.97 0.00 0.00 3.20
126 127 5.821470 CAGAAACAGCATATGAATCCACTCT 59.179 40.000 6.97 0.00 0.00 3.24
127 128 5.819379 TCAGAAACAGCATATGAATCCACTC 59.181 40.000 6.97 0.00 0.00 3.51
128 129 5.748402 TCAGAAACAGCATATGAATCCACT 58.252 37.500 6.97 0.00 0.00 4.00
129 130 5.819379 TCTCAGAAACAGCATATGAATCCAC 59.181 40.000 6.97 0.00 0.00 4.02
130 131 5.993055 TCTCAGAAACAGCATATGAATCCA 58.007 37.500 6.97 0.00 0.00 3.41
131 132 6.568081 GCATCTCAGAAACAGCATATGAATCC 60.568 42.308 6.97 0.00 0.00 3.01
132 133 6.017357 TGCATCTCAGAAACAGCATATGAATC 60.017 38.462 6.97 0.00 0.00 2.52
133 134 5.826208 TGCATCTCAGAAACAGCATATGAAT 59.174 36.000 6.97 0.00 0.00 2.57
150 151 7.158021 AGCTATATTTACAGGAAGTGCATCTC 58.842 38.462 0.00 0.00 0.00 2.75
174 175 5.351233 TCGCGCCATTTACCATAAAATAG 57.649 39.130 0.00 0.00 0.00 1.73
180 181 0.871722 GCATCGCGCCATTTACCATA 59.128 50.000 0.00 0.00 32.94 2.74
192 193 0.301687 GTGTTGTGGATAGCATCGCG 59.698 55.000 0.00 0.00 0.00 5.87
195 196 4.256920 ACTTCAGTGTTGTGGATAGCATC 58.743 43.478 0.00 0.00 0.00 3.91
198 199 3.437049 GGAACTTCAGTGTTGTGGATAGC 59.563 47.826 0.00 0.00 0.00 2.97
203 204 2.951642 ACATGGAACTTCAGTGTTGTGG 59.048 45.455 0.00 0.00 0.00 4.17
206 207 4.576053 TGAAGACATGGAACTTCAGTGTTG 59.424 41.667 20.22 0.00 44.59 3.33
219 220 3.256383 TGGACTGCAAAATGAAGACATGG 59.744 43.478 0.00 0.00 36.79 3.66
231 232 6.489700 TGAAGTTAAATCAGATGGACTGCAAA 59.510 34.615 0.00 0.00 45.38 3.68
257 258 3.093057 AGTAAGTCAGTAGCACCCTCAG 58.907 50.000 0.00 0.00 0.00 3.35
265 266 2.418884 GGCTTCCCAGTAAGTCAGTAGC 60.419 54.545 0.00 0.00 31.25 3.58
284 285 4.946157 AGCAATGCATATACCAGAATAGGC 59.054 41.667 8.35 0.00 39.09 3.93
288 289 5.508489 GCAACAGCAATGCATATACCAGAAT 60.508 40.000 8.35 0.00 43.29 2.40
294 295 5.342433 TCAAAGCAACAGCAATGCATATAC 58.658 37.500 8.35 0.00 46.22 1.47
295 296 5.579564 TCAAAGCAACAGCAATGCATATA 57.420 34.783 8.35 0.00 46.22 0.86
296 297 4.459390 TCAAAGCAACAGCAATGCATAT 57.541 36.364 8.35 0.00 46.22 1.78
297 298 3.938289 TCAAAGCAACAGCAATGCATA 57.062 38.095 8.35 0.00 46.22 3.14
341 342 9.492973 GCATTGCCCTGACATTTTATTTATTAT 57.507 29.630 0.00 0.00 0.00 1.28
342 343 8.481314 TGCATTGCCCTGACATTTTATTTATTA 58.519 29.630 6.12 0.00 0.00 0.98
343 344 7.337167 TGCATTGCCCTGACATTTTATTTATT 58.663 30.769 6.12 0.00 0.00 1.40
344 345 6.887013 TGCATTGCCCTGACATTTTATTTAT 58.113 32.000 6.12 0.00 0.00 1.40
345 346 6.291648 TGCATTGCCCTGACATTTTATTTA 57.708 33.333 6.12 0.00 0.00 1.40
346 347 5.163281 TGCATTGCCCTGACATTTTATTT 57.837 34.783 6.12 0.00 0.00 1.40
351 352 3.262405 AGAAATGCATTGCCCTGACATTT 59.738 39.130 13.82 4.26 42.09 2.32
364 365 9.090692 GTGTATTTTAAATGAGCAGAAATGCAT 57.909 29.630 0.00 0.00 35.72 3.96
381 382 7.946381 TTTATCTGGTGGCATGTGTATTTTA 57.054 32.000 0.00 0.00 0.00 1.52
389 390 3.009723 CTCGTTTTATCTGGTGGCATGT 58.990 45.455 0.00 0.00 0.00 3.21
399 400 6.811253 AGCGATATCTCTCTCGTTTTATCT 57.189 37.500 0.34 0.00 37.23 1.98
417 432 1.531149 CAACCGTCTTGTGAAAGCGAT 59.469 47.619 0.00 0.00 0.00 4.58
420 435 2.844122 AACAACCGTCTTGTGAAAGC 57.156 45.000 0.00 0.00 32.22 3.51
430 445 4.514066 ACATAGACAGGAAAAACAACCGTC 59.486 41.667 0.00 0.00 33.49 4.79
432 447 5.106830 GGTACATAGACAGGAAAAACAACCG 60.107 44.000 0.00 0.00 0.00 4.44
438 453 5.105228 CGGGTAGGTACATAGACAGGAAAAA 60.105 44.000 0.00 0.00 0.00 1.94
447 462 0.473755 TCCGCGGGTAGGTACATAGA 59.526 55.000 27.83 0.00 0.00 1.98
452 467 1.105759 ACTGATCCGCGGGTAGGTAC 61.106 60.000 27.83 6.13 0.00 3.34
453 468 1.105167 CACTGATCCGCGGGTAGGTA 61.105 60.000 27.83 4.46 0.00 3.08
454 469 2.043248 ACTGATCCGCGGGTAGGT 60.043 61.111 27.83 17.60 0.00 3.08
455 470 1.464376 ATCACTGATCCGCGGGTAGG 61.464 60.000 27.83 16.87 0.00 3.18
456 471 0.319040 CATCACTGATCCGCGGGTAG 60.319 60.000 27.83 22.05 0.00 3.18
457 472 1.739667 CATCACTGATCCGCGGGTA 59.260 57.895 27.83 7.28 0.00 3.69
458 473 2.501128 CATCACTGATCCGCGGGT 59.499 61.111 27.83 21.57 0.00 5.28
459 474 2.969238 GCATCACTGATCCGCGGG 60.969 66.667 27.83 11.94 0.00 6.13
460 475 2.202919 TGCATCACTGATCCGCGG 60.203 61.111 22.12 22.12 0.00 6.46
461 476 1.360931 TTGTGCATCACTGATCCGCG 61.361 55.000 0.00 0.00 35.11 6.46
462 477 0.376152 CTTGTGCATCACTGATCCGC 59.624 55.000 0.00 0.00 35.11 5.54
463 478 1.012086 CCTTGTGCATCACTGATCCG 58.988 55.000 0.00 0.00 35.11 4.18
464 479 0.737219 GCCTTGTGCATCACTGATCC 59.263 55.000 0.00 0.00 40.77 3.36
465 480 1.669779 GAGCCTTGTGCATCACTGATC 59.330 52.381 0.00 0.00 44.83 2.92
466 481 1.681166 GGAGCCTTGTGCATCACTGAT 60.681 52.381 0.00 0.00 44.83 2.90
546 561 4.284490 ACTTGGTTGAACATGAGCTCTCTA 59.716 41.667 16.19 0.00 0.00 2.43
601 616 0.734889 CCAGTAGAATTGCTTGGCGG 59.265 55.000 0.00 0.00 0.00 6.13
621 648 6.561519 AATAGACTAGGCACATACAAAGGT 57.438 37.500 0.00 0.00 0.00 3.50
625 652 6.941857 TGTGAAATAGACTAGGCACATACAA 58.058 36.000 0.00 0.00 32.01 2.41
634 661 3.246226 GCGCACATGTGAAATAGACTAGG 59.754 47.826 29.80 0.00 0.00 3.02
641 668 3.501828 ACAAAGAGCGCACATGTGAAATA 59.498 39.130 29.80 0.00 0.00 1.40
657 684 1.134128 TGCTTCTGCACTCCACAAAGA 60.134 47.619 0.00 0.00 45.31 2.52
658 685 1.266175 CTGCTTCTGCACTCCACAAAG 59.734 52.381 0.00 0.00 45.31 2.77
659 686 1.311859 CTGCTTCTGCACTCCACAAA 58.688 50.000 0.00 0.00 45.31 2.83
660 687 1.168407 GCTGCTTCTGCACTCCACAA 61.168 55.000 0.00 0.00 45.31 3.33
661 688 1.598962 GCTGCTTCTGCACTCCACA 60.599 57.895 0.00 0.00 45.31 4.17
662 689 2.331132 GGCTGCTTCTGCACTCCAC 61.331 63.158 0.00 0.00 45.31 4.02
663 690 2.033141 GGCTGCTTCTGCACTCCA 59.967 61.111 0.00 0.00 45.31 3.86
664 691 2.749441 GGGCTGCTTCTGCACTCC 60.749 66.667 0.00 0.00 45.31 3.85
665 692 1.303155 AAGGGCTGCTTCTGCACTC 60.303 57.895 0.00 0.00 41.04 3.51
666 693 1.602888 CAAGGGCTGCTTCTGCACT 60.603 57.895 0.00 0.00 43.65 4.40
667 694 0.606401 TACAAGGGCTGCTTCTGCAC 60.606 55.000 0.00 0.00 45.31 4.57
669 696 1.133790 CATTACAAGGGCTGCTTCTGC 59.866 52.381 0.00 0.00 40.20 4.26
670 697 2.715046 TCATTACAAGGGCTGCTTCTG 58.285 47.619 0.00 0.00 0.00 3.02
671 698 3.285484 CATCATTACAAGGGCTGCTTCT 58.715 45.455 0.00 0.00 0.00 2.85
672 699 2.360165 CCATCATTACAAGGGCTGCTTC 59.640 50.000 0.00 0.00 0.00 3.86
673 700 2.381911 CCATCATTACAAGGGCTGCTT 58.618 47.619 0.00 0.00 0.00 3.91
674 701 1.410648 CCCATCATTACAAGGGCTGCT 60.411 52.381 0.00 0.00 33.91 4.24
675 702 1.035139 CCCATCATTACAAGGGCTGC 58.965 55.000 0.00 0.00 33.91 5.25
676 703 1.696063 CCCCATCATTACAAGGGCTG 58.304 55.000 0.00 0.00 40.07 4.85
681 708 0.937304 CGTCGCCCCATCATTACAAG 59.063 55.000 0.00 0.00 0.00 3.16
700 727 1.525197 TGTGACAACAAGATCGCGTTC 59.475 47.619 5.77 7.71 31.82 3.95
703 730 1.726248 TGATGTGACAACAAGATCGCG 59.274 47.619 0.00 0.00 40.46 5.87
724 751 8.431910 TTGGGTAGTTAGGTATTGGATATCTC 57.568 38.462 2.05 0.00 0.00 2.75
727 754 7.742213 TGGATTGGGTAGTTAGGTATTGGATAT 59.258 37.037 0.00 0.00 0.00 1.63
734 761 5.034200 TGTGTGGATTGGGTAGTTAGGTAT 58.966 41.667 0.00 0.00 0.00 2.73
793 820 7.897575 AGTTTCAACATAGCAGTAGAGAAAG 57.102 36.000 0.00 0.00 0.00 2.62
891 924 4.948004 ACTCCGAAAGTTCAACCTTTCTTT 59.052 37.500 10.80 0.00 45.23 2.52
898 931 3.858238 CGATCTACTCCGAAAGTTCAACC 59.142 47.826 0.00 0.00 39.55 3.77
901 934 3.087031 ACCGATCTACTCCGAAAGTTCA 58.913 45.455 0.00 0.00 39.55 3.18
921 954 9.976511 GATTACAAAAGGGGGCTTTTTATATAC 57.023 33.333 0.00 0.00 34.68 1.47
933 966 3.269643 AGGGAGAAGATTACAAAAGGGGG 59.730 47.826 0.00 0.00 0.00 5.40
993 1026 1.672356 GCAGTTGCCCATGTCTCGT 60.672 57.895 0.00 0.00 34.31 4.18
994 1027 1.642037 CTGCAGTTGCCCATGTCTCG 61.642 60.000 5.25 0.00 41.18 4.04
995 1028 1.930908 GCTGCAGTTGCCCATGTCTC 61.931 60.000 16.64 0.00 41.18 3.36
996 1029 1.975407 GCTGCAGTTGCCCATGTCT 60.975 57.895 16.64 0.00 41.18 3.41
997 1030 2.209064 CTGCTGCAGTTGCCCATGTC 62.209 60.000 21.21 0.00 41.18 3.06
1145 1195 1.372997 CGAATATCCTGCGGTCCCG 60.373 63.158 0.24 0.24 43.09 5.14
1180 1230 1.818060 TCTTCAATGGAAACCATGCCG 59.182 47.619 3.97 0.00 44.40 5.69
1312 1362 8.162085 AGAATAACTCAGCCATGAATATGACAT 58.838 33.333 0.00 0.00 36.36 3.06
1313 1363 7.512130 AGAATAACTCAGCCATGAATATGACA 58.488 34.615 0.00 0.00 36.36 3.58
1323 1381 4.885907 CACCATCAAGAATAACTCAGCCAT 59.114 41.667 0.00 0.00 0.00 4.40
1330 1388 4.344104 CCCAACCACCATCAAGAATAACT 58.656 43.478 0.00 0.00 0.00 2.24
1334 1392 1.560505 GCCCAACCACCATCAAGAAT 58.439 50.000 0.00 0.00 0.00 2.40
1359 1417 6.042777 GGAGGAGCAAATATTAAACCAAAGC 58.957 40.000 0.00 0.00 0.00 3.51
1374 1435 0.976641 ACATCTTCACGGAGGAGCAA 59.023 50.000 0.00 0.00 0.00 3.91
1377 1438 1.821753 ACAGACATCTTCACGGAGGAG 59.178 52.381 0.00 0.00 0.00 3.69
1380 1441 1.337167 TGCACAGACATCTTCACGGAG 60.337 52.381 0.00 0.00 0.00 4.63
1382 1443 1.073964 CTGCACAGACATCTTCACGG 58.926 55.000 0.00 0.00 0.00 4.94
1385 1446 1.002430 GGTCCTGCACAGACATCTTCA 59.998 52.381 12.85 0.00 0.00 3.02
1528 1589 9.965824 TGAAATCAAAAGATTAACCTTGAAGAC 57.034 29.630 0.00 0.00 31.94 3.01
1573 1636 5.532406 AGCATTGCCGTATTTCAGAATATGT 59.468 36.000 4.70 0.00 34.36 2.29
1596 1659 6.449698 ACATAACAGGCTGAAATTTGACAAG 58.550 36.000 23.66 3.04 0.00 3.16
1612 1676 3.441222 TGCATGGCTTTCTGACATAACAG 59.559 43.478 0.00 0.00 43.93 3.16
1620 1684 3.920231 ATAGACTGCATGGCTTTCTGA 57.080 42.857 0.00 0.00 34.56 3.27
1656 1720 0.404040 ATTCCGAACTCTTTGCCCCA 59.596 50.000 0.00 0.00 0.00 4.96
1675 1739 3.513912 ACAGGATCACCTTTGATGTACGA 59.486 43.478 0.00 0.00 45.36 3.43
1694 1758 9.307121 CAAGAATAGTCAGGTATGTAAGAACAG 57.693 37.037 0.00 0.00 39.49 3.16
1699 1763 7.556844 ACACCAAGAATAGTCAGGTATGTAAG 58.443 38.462 6.96 0.00 33.92 2.34
1703 1767 6.406370 TCAACACCAAGAATAGTCAGGTATG 58.594 40.000 6.96 9.18 33.92 2.39
1707 1771 5.530915 TGTTTCAACACCAAGAATAGTCAGG 59.469 40.000 0.00 0.00 33.17 3.86
1712 1776 5.215160 GTGCTGTTTCAACACCAAGAATAG 58.785 41.667 0.00 0.00 34.70 1.73
1730 1794 9.433153 ACTTACATGATCATATTAGATGTGCTG 57.567 33.333 8.15 0.00 0.00 4.41
1797 1861 2.954753 GCCTCCGACTGCGTGTTTG 61.955 63.158 0.00 0.00 35.23 2.93
1821 1885 3.713826 TTCTTTCTCCCAATTACGCCT 57.286 42.857 0.00 0.00 0.00 5.52
1836 1900 0.185901 TGGCCACAGCTCCTTTCTTT 59.814 50.000 0.00 0.00 39.73 2.52
1860 1924 2.027561 CCGGATCCCACTGAAGTTTACA 60.028 50.000 6.06 0.00 0.00 2.41
1927 1991 8.193953 ACCCAACAATAAGAAATTGATTGACT 57.806 30.769 4.82 0.00 35.12 3.41
1929 1993 8.421249 AGACCCAACAATAAGAAATTGATTGA 57.579 30.769 4.82 0.00 35.12 2.57
1963 2042 6.708502 TGTTGTTGCTTTCAGTATTAGCACTA 59.291 34.615 0.00 0.00 43.96 2.74
2247 2358 5.585844 TGTGTCAGGCATTTATGTCATGTAG 59.414 40.000 0.00 0.00 34.11 2.74
2270 2381 2.353889 AGCTTCTGAAACAGCGCATATG 59.646 45.455 11.47 0.75 41.24 1.78
2725 2854 8.983724 GCTATTTGCCTTTACAATTTTGTTACA 58.016 29.630 0.63 0.00 37.92 2.41
2726 2855 8.983724 TGCTATTTGCCTTTACAATTTTGTTAC 58.016 29.630 0.63 0.00 40.76 2.50
2727 2856 9.717942 ATGCTATTTGCCTTTACAATTTTGTTA 57.282 25.926 0.63 0.00 40.76 2.41
2729 2858 9.369904 CTATGCTATTTGCCTTTACAATTTTGT 57.630 29.630 1.08 1.08 42.20 2.83
2730 2859 9.585099 TCTATGCTATTTGCCTTTACAATTTTG 57.415 29.630 0.00 0.00 42.00 2.44
2732 2861 9.754382 CATCTATGCTATTTGCCTTTACAATTT 57.246 29.630 0.00 0.00 42.00 1.82
2814 2943 4.225984 CAACAACATGAATACACGGTTGG 58.774 43.478 0.00 2.47 43.05 3.77
2842 2971 5.783111 CGTCACCATATAACATCATGAGGA 58.217 41.667 15.42 0.00 0.00 3.71
2891 3049 6.129393 CACATCAGAAGTTGTTTGTAGAACG 58.871 40.000 0.00 0.00 33.05 3.95
2943 3110 4.816786 TTAACCAAAGTTTAGTGTCCGC 57.183 40.909 0.00 0.00 37.42 5.54
2945 3112 8.156994 TGTGTATTAACCAAAGTTTAGTGTCC 57.843 34.615 0.00 0.00 37.42 4.02
3028 3196 3.295973 CCGGGTATCAATGGGAAACAAT 58.704 45.455 0.00 0.00 0.00 2.71
3031 3199 2.021457 CACCGGGTATCAATGGGAAAC 58.979 52.381 6.32 0.00 0.00 2.78
3050 3218 0.248825 GTGGTGCAACGATTTGTGCA 60.249 50.000 0.00 0.00 38.12 4.57
3051 3219 0.939106 GGTGGTGCAACGATTTGTGC 60.939 55.000 0.00 0.00 38.12 4.57
3052 3220 0.667993 AGGTGGTGCAACGATTTGTG 59.332 50.000 0.00 0.00 38.12 3.33
3053 3221 2.151202 CTAGGTGGTGCAACGATTTGT 58.849 47.619 0.00 0.00 38.12 2.83
3054 3222 1.135689 GCTAGGTGGTGCAACGATTTG 60.136 52.381 0.00 0.00 38.12 2.32
3057 3225 0.036164 TTGCTAGGTGGTGCAACGAT 59.964 50.000 0.00 0.00 43.17 3.73
3059 3227 4.057224 TTGCTAGGTGGTGCAACG 57.943 55.556 0.00 0.00 43.17 4.10
3063 3231 1.135689 CAAACGATTGCTAGGTGGTGC 60.136 52.381 0.00 0.00 0.00 5.01
3069 3237 4.393062 ACAGTTGATCAAACGATTGCTAGG 59.607 41.667 10.35 0.00 44.04 3.02
3079 3247 9.509855 TTTACACACAATTACAGTTGATCAAAC 57.490 29.630 10.35 4.88 39.24 2.93
3096 3264 8.812329 GTTGCTGATTTACAAATTTTACACACA 58.188 29.630 0.00 0.00 0.00 3.72
3122 3301 9.401873 CACAATATAGCACCAATATGAACAATG 57.598 33.333 0.00 0.00 0.00 2.82
3134 3313 3.348647 ACTGCACACAATATAGCACCA 57.651 42.857 0.00 0.00 32.87 4.17
3201 3382 5.042463 TGAACTTCAAACCACATACCTGA 57.958 39.130 0.00 0.00 0.00 3.86
3216 3397 2.028112 GGCCCCCTTCAATTTGAACTTC 60.028 50.000 7.74 0.00 32.21 3.01
3218 3399 1.149923 AGGCCCCCTTCAATTTGAACT 59.850 47.619 7.74 0.45 32.21 3.01
3235 3416 9.481340 GAAAATGAAAATTCCTAATATGGAGGC 57.519 33.333 0.00 0.00 37.43 4.70
3263 3444 5.867903 AATTGTGAAATCCAAACTGTCCA 57.132 34.783 0.00 0.00 0.00 4.02
3265 3446 7.769272 TTGAAATTGTGAAATCCAAACTGTC 57.231 32.000 0.00 0.00 0.00 3.51
3288 3477 4.962362 AGAATTGTGTTCCTTCCTTGGTTT 59.038 37.500 0.00 0.00 0.00 3.27
3293 3482 7.898014 AAGTTAAGAATTGTGTTCCTTCCTT 57.102 32.000 0.00 0.00 0.00 3.36
3294 3483 7.342026 ACAAAGTTAAGAATTGTGTTCCTTCCT 59.658 33.333 0.00 0.00 36.03 3.36
3295 3484 7.489160 ACAAAGTTAAGAATTGTGTTCCTTCC 58.511 34.615 0.00 0.00 36.03 3.46
3296 3485 9.447040 GTACAAAGTTAAGAATTGTGTTCCTTC 57.553 33.333 9.54 0.00 37.78 3.46
3319 3508 3.840124 AATTTGGATCGGAGGGAGTAC 57.160 47.619 0.00 0.00 0.00 2.73
3321 3510 5.104109 TCAATTAATTTGGATCGGAGGGAGT 60.104 40.000 0.00 0.00 35.92 3.85
3322 3511 5.376625 TCAATTAATTTGGATCGGAGGGAG 58.623 41.667 0.00 0.00 35.92 4.30
3324 3513 5.565439 GCATCAATTAATTTGGATCGGAGGG 60.565 44.000 0.00 0.00 35.92 4.30
3326 3515 6.323203 AGCATCAATTAATTTGGATCGGAG 57.677 37.500 0.00 0.00 35.92 4.63
3328 3517 9.480053 AATTAAGCATCAATTAATTTGGATCGG 57.520 29.630 0.00 0.00 38.89 4.18
3341 3530 7.491682 ACGCTTATTCCAAATTAAGCATCAAT 58.508 30.769 13.29 0.00 46.82 2.57
3342 3531 6.862209 ACGCTTATTCCAAATTAAGCATCAA 58.138 32.000 13.29 0.00 46.82 2.57
3343 3532 6.318648 AGACGCTTATTCCAAATTAAGCATCA 59.681 34.615 11.70 0.00 46.82 3.07
3344 3533 6.729187 AGACGCTTATTCCAAATTAAGCATC 58.271 36.000 13.29 8.54 46.82 3.91
3345 3534 6.699575 AGACGCTTATTCCAAATTAAGCAT 57.300 33.333 13.29 0.00 46.82 3.79
3347 3536 7.247929 ACTAGACGCTTATTCCAAATTAAGC 57.752 36.000 0.00 4.92 44.33 3.09
3348 3537 8.979574 CCTACTAGACGCTTATTCCAAATTAAG 58.020 37.037 0.00 0.00 0.00 1.85
3349 3538 7.929785 CCCTACTAGACGCTTATTCCAAATTAA 59.070 37.037 0.00 0.00 0.00 1.40
3350 3539 7.439381 CCCTACTAGACGCTTATTCCAAATTA 58.561 38.462 0.00 0.00 0.00 1.40
3363 3563 1.028130 GGTACACCCCTACTAGACGC 58.972 60.000 0.00 0.00 0.00 5.19
3373 3585 4.739587 TTCTTTTGTTTTGGTACACCCC 57.260 40.909 0.00 0.00 39.29 4.95
3405 3617 7.776107 TGTTTCTGTACCATGAAATTTGTGAA 58.224 30.769 0.00 0.00 35.13 3.18
3439 3651 1.452833 GAGCTGCAGGGTTCCATCC 60.453 63.158 17.12 0.00 0.00 3.51
3442 3654 3.650950 GGGAGCTGCAGGGTTCCA 61.651 66.667 17.12 0.00 40.71 3.53
3448 3662 0.326264 AGTAAACTGGGAGCTGCAGG 59.674 55.000 17.12 0.99 0.00 4.85
3452 3666 3.873952 GCATAGAAGTAAACTGGGAGCTG 59.126 47.826 0.00 0.00 0.00 4.24
3453 3667 3.118223 GGCATAGAAGTAAACTGGGAGCT 60.118 47.826 0.00 0.00 0.00 4.09
3455 3669 4.487714 TGGCATAGAAGTAAACTGGGAG 57.512 45.455 0.00 0.00 0.00 4.30
3457 3671 6.174720 TCTATGGCATAGAAGTAAACTGGG 57.825 41.667 29.96 5.15 38.85 4.45
3458 3672 8.367911 TGTATCTATGGCATAGAAGTAAACTGG 58.632 37.037 33.94 8.22 44.41 4.00
3459 3673 9.197694 GTGTATCTATGGCATAGAAGTAAACTG 57.802 37.037 33.94 8.70 44.41 3.16
3466 3680 9.144747 GTGTAATGTGTATCTATGGCATAGAAG 57.855 37.037 33.94 14.53 44.41 2.85
3470 3729 7.016170 AGTGGTGTAATGTGTATCTATGGCATA 59.984 37.037 7.06 7.06 0.00 3.14
3489 3748 7.255942 CCCAGAAGAAATTTAATTCAGTGGTGT 60.256 37.037 14.69 0.00 29.99 4.16
3531 3790 8.824756 TCTGTACCATCTTTACTAGACATTCT 57.175 34.615 0.00 0.00 35.19 2.40
3622 3881 0.321122 GCCAGGAACTCTCACACCAG 60.321 60.000 0.00 0.00 34.60 4.00
3663 3928 8.352942 GGTTTTGTGAGTTTTGTCATCTAGAAT 58.647 33.333 0.00 0.00 0.00 2.40
3670 3935 5.659440 ACTGGTTTTGTGAGTTTTGTCAT 57.341 34.783 0.00 0.00 0.00 3.06
3712 3977 4.821805 GTCTGTTCCATCCAAAAGACTGAA 59.178 41.667 0.00 0.00 33.02 3.02
3842 4107 0.108585 GGTTTCACAGCACCCTCTCA 59.891 55.000 0.00 0.00 0.00 3.27
3883 4148 9.006839 TCTGAATTTTAGCACATGATGATATCC 57.993 33.333 0.00 0.00 0.00 2.59
3892 4157 9.146984 ACATTGATTTCTGAATTTTAGCACATG 57.853 29.630 0.00 0.00 0.00 3.21


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.