Multiple sequence alignment - TraesCS4B01G070400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G070400 chr4B 100.000 4309 0 0 452 4760 64693156 64697464 0.000000e+00 7958.0
1 TraesCS4B01G070400 chr4B 95.736 258 11 0 452 709 3249213 3249470 2.650000e-112 416.0
2 TraesCS4B01G070400 chr4B 95.946 222 9 0 509 730 60636662 60636883 1.260000e-95 361.0
3 TraesCS4B01G070400 chr4B 100.000 50 0 0 1 50 64692705 64692754 5.070000e-15 93.5
4 TraesCS4B01G070400 chr4A 91.997 3074 175 35 728 3775 554929645 554926617 0.000000e+00 4248.0
5 TraesCS4B01G070400 chr4A 94.678 357 17 2 4405 4760 554926053 554925698 1.940000e-153 553.0
6 TraesCS4B01G070400 chr4A 87.097 217 11 7 4207 4413 554926284 554926075 3.710000e-56 230.0
7 TraesCS4B01G070400 chr4A 95.588 68 3 0 3804 3871 554926541 554926474 5.040000e-20 110.0
8 TraesCS4B01G070400 chr4D 93.314 2423 97 25 1399 3775 44742587 44744990 0.000000e+00 3517.0
9 TraesCS4B01G070400 chr4D 87.129 1010 78 26 3791 4757 44745051 44746051 0.000000e+00 1098.0
10 TraesCS4B01G070400 chr4D 89.114 643 28 9 728 1356 44741962 44742576 0.000000e+00 761.0
11 TraesCS4B01G070400 chr1B 95.349 258 12 0 452 709 78720779 78721036 1.230000e-110 411.0
12 TraesCS4B01G070400 chr1B 92.683 287 13 1 452 730 664344398 664344684 1.590000e-109 407.0
13 TraesCS4B01G070400 chr1B 93.846 260 15 1 453 712 69253113 69252855 1.610000e-104 390.0
14 TraesCS4B01G070400 chr1B 100.000 35 0 0 699 733 626364211 626364245 1.110000e-06 65.8
15 TraesCS4B01G070400 chr7B 93.561 264 13 2 452 712 516264090 516263828 1.610000e-104 390.0
16 TraesCS4B01G070400 chr7B 94.093 237 14 0 476 712 538390120 538389884 1.260000e-95 361.0
17 TraesCS4B01G070400 chr3B 85.666 293 28 7 452 731 207451473 207451764 3.600000e-76 296.0
18 TraesCS4B01G070400 chr3B 94.737 38 1 1 3894 3930 380680373 380680410 1.850000e-04 58.4
19 TraesCS4B01G070400 chr7A 84.155 284 38 6 452 732 46801414 46801693 7.850000e-68 268.0
20 TraesCS4B01G070400 chr7A 100.000 34 0 0 699 732 259572000 259572033 3.980000e-06 63.9
21 TraesCS4B01G070400 chr6D 84.862 218 27 5 3560 3775 173902628 173902841 1.040000e-51 215.0
22 TraesCS4B01G070400 chr6D 100.000 34 0 0 695 728 255008054 255008087 3.980000e-06 63.9
23 TraesCS4B01G070400 chr2B 100.000 35 0 0 697 731 683137835 683137801 1.110000e-06 65.8
24 TraesCS4B01G070400 chr6A 100.000 33 0 0 3894 3926 15581584 15581616 1.430000e-05 62.1
25 TraesCS4B01G070400 chr3D 87.273 55 5 1 3884 3936 610348987 610348933 1.430000e-05 62.1
26 TraesCS4B01G070400 chr3D 94.737 38 1 1 3894 3930 287478491 287478528 1.850000e-04 58.4
27 TraesCS4B01G070400 chr3A 87.273 55 5 1 3884 3936 744436672 744436618 1.430000e-05 62.1
28 TraesCS4B01G070400 chr3A 94.737 38 1 1 3894 3930 377144731 377144768 1.850000e-04 58.4
29 TraesCS4B01G070400 chr3A 97.143 35 0 1 3893 3926 710277855 710277821 1.850000e-04 58.4
30 TraesCS4B01G070400 chrUn 90.698 43 3 1 3880 3922 79688336 79688295 6.650000e-04 56.5
31 TraesCS4B01G070400 chr6B 90.698 43 3 1 3880 3922 714272102 714272143 6.650000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G070400 chr4B 64692705 64697464 4759 False 4025.75 7958 100.000000 1 4760 2 chr4B.!!$F3 4759
1 TraesCS4B01G070400 chr4A 554925698 554929645 3947 True 1285.25 4248 92.340000 728 4760 4 chr4A.!!$R1 4032
2 TraesCS4B01G070400 chr4D 44741962 44746051 4089 False 1792.00 3517 89.852333 728 4757 3 chr4D.!!$F1 4029

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
602 603 0.038310 GGTTGGGAGAGGGTTTGAGG 59.962 60.0 0.00 0.0 0.00 3.86 F
1395 1415 0.030773 CTCCCGAATCGAATCTCGCA 59.969 55.0 3.36 0.0 40.21 5.10 F
2426 2449 0.253044 CAAGCCTTGAATCGGGAGGA 59.747 55.0 0.00 0.0 32.11 3.71 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2131 2151 0.101579 GGCTCCTGTACTCTCTTCGC 59.898 60.0 0.00 0.00 0.00 4.70 R
2823 2854 0.395311 CCCTTCAGTGCTGGCATGAT 60.395 55.0 0.00 0.00 0.00 2.45 R
3787 3865 0.038744 AACTGGATGGAACCCTGCAG 59.961 55.0 6.78 6.78 36.93 4.41 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
529 530 4.162690 GGGAGTTGGCGCGAGGAT 62.163 66.667 12.10 0.00 0.00 3.24
530 531 2.792947 GGGAGTTGGCGCGAGGATA 61.793 63.158 12.10 0.00 0.00 2.59
531 532 1.143183 GGAGTTGGCGCGAGGATAA 59.857 57.895 12.10 0.00 0.00 1.75
532 533 1.152383 GGAGTTGGCGCGAGGATAAC 61.152 60.000 12.10 6.78 0.00 1.89
533 534 1.152383 GAGTTGGCGCGAGGATAACC 61.152 60.000 12.10 0.00 0.00 2.85
534 535 2.202824 TTGGCGCGAGGATAACCG 60.203 61.111 12.10 0.00 41.83 4.44
539 540 3.719214 GCGAGGATAACCGCCAAG 58.281 61.111 0.00 0.00 45.06 3.61
540 541 1.153429 GCGAGGATAACCGCCAAGT 60.153 57.895 0.00 0.00 45.06 3.16
541 542 1.429148 GCGAGGATAACCGCCAAGTG 61.429 60.000 0.00 0.00 45.06 3.16
542 543 0.174845 CGAGGATAACCGCCAAGTGA 59.825 55.000 0.00 0.00 41.83 3.41
543 544 1.802880 CGAGGATAACCGCCAAGTGAG 60.803 57.143 0.00 0.00 41.83 3.51
544 545 0.541863 AGGATAACCGCCAAGTGAGG 59.458 55.000 0.00 0.00 41.83 3.86
545 546 0.463833 GGATAACCGCCAAGTGAGGG 60.464 60.000 0.00 0.00 0.00 4.30
546 547 0.252197 GATAACCGCCAAGTGAGGGT 59.748 55.000 0.00 0.00 0.00 4.34
547 548 0.696501 ATAACCGCCAAGTGAGGGTT 59.303 50.000 9.80 9.80 44.49 4.11
548 549 0.250553 TAACCGCCAAGTGAGGGTTG 60.251 55.000 13.15 0.00 42.44 3.77
549 550 2.672996 CCGCCAAGTGAGGGTTGG 60.673 66.667 0.00 0.00 46.36 3.77
550 551 2.672996 CGCCAAGTGAGGGTTGGG 60.673 66.667 4.12 0.00 44.16 4.12
551 552 2.843545 GCCAAGTGAGGGTTGGGA 59.156 61.111 4.12 0.00 44.16 4.37
552 553 1.384191 GCCAAGTGAGGGTTGGGAT 59.616 57.895 4.12 0.00 44.16 3.85
553 554 0.623723 GCCAAGTGAGGGTTGGGATA 59.376 55.000 4.12 0.00 44.16 2.59
554 555 1.408822 GCCAAGTGAGGGTTGGGATAG 60.409 57.143 4.12 0.00 44.16 2.08
555 556 1.212935 CCAAGTGAGGGTTGGGATAGG 59.787 57.143 0.00 0.00 40.83 2.57
556 557 1.916181 CAAGTGAGGGTTGGGATAGGT 59.084 52.381 0.00 0.00 0.00 3.08
557 558 2.308866 CAAGTGAGGGTTGGGATAGGTT 59.691 50.000 0.00 0.00 0.00 3.50
558 559 2.644151 AGTGAGGGTTGGGATAGGTTT 58.356 47.619 0.00 0.00 0.00 3.27
559 560 2.993863 AGTGAGGGTTGGGATAGGTTTT 59.006 45.455 0.00 0.00 0.00 2.43
560 561 3.089284 GTGAGGGTTGGGATAGGTTTTG 58.911 50.000 0.00 0.00 0.00 2.44
561 562 2.100197 GAGGGTTGGGATAGGTTTTGC 58.900 52.381 0.00 0.00 0.00 3.68
562 563 1.716503 AGGGTTGGGATAGGTTTTGCT 59.283 47.619 0.00 0.00 0.00 3.91
563 564 2.100197 GGGTTGGGATAGGTTTTGCTC 58.900 52.381 0.00 0.00 0.00 4.26
564 565 2.100197 GGTTGGGATAGGTTTTGCTCC 58.900 52.381 0.00 0.00 0.00 4.70
565 566 2.100197 GTTGGGATAGGTTTTGCTCCC 58.900 52.381 0.00 0.00 46.41 4.30
566 567 0.629058 TGGGATAGGTTTTGCTCCCC 59.371 55.000 4.10 0.00 45.77 4.81
567 568 0.629058 GGGATAGGTTTTGCTCCCCA 59.371 55.000 0.00 0.00 41.35 4.96
568 569 1.006639 GGGATAGGTTTTGCTCCCCAA 59.993 52.381 0.00 0.00 41.35 4.12
569 570 2.100197 GGATAGGTTTTGCTCCCCAAC 58.900 52.381 0.00 0.00 31.97 3.77
570 571 2.100197 GATAGGTTTTGCTCCCCAACC 58.900 52.381 0.00 0.00 40.40 3.77
571 572 0.113580 TAGGTTTTGCTCCCCAACCC 59.886 55.000 0.00 0.00 40.92 4.11
572 573 1.152333 GGTTTTGCTCCCCAACCCT 60.152 57.895 0.00 0.00 34.90 4.34
573 574 0.762842 GGTTTTGCTCCCCAACCCTT 60.763 55.000 0.00 0.00 34.90 3.95
574 575 1.481615 GGTTTTGCTCCCCAACCCTTA 60.482 52.381 0.00 0.00 34.90 2.69
575 576 1.616865 GTTTTGCTCCCCAACCCTTAC 59.383 52.381 0.00 0.00 31.97 2.34
576 577 1.154430 TTTGCTCCCCAACCCTTACT 58.846 50.000 0.00 0.00 31.97 2.24
577 578 1.154430 TTGCTCCCCAACCCTTACTT 58.846 50.000 0.00 0.00 0.00 2.24
578 579 0.696501 TGCTCCCCAACCCTTACTTC 59.303 55.000 0.00 0.00 0.00 3.01
579 580 0.992695 GCTCCCCAACCCTTACTTCT 59.007 55.000 0.00 0.00 0.00 2.85
580 581 1.340114 GCTCCCCAACCCTTACTTCTG 60.340 57.143 0.00 0.00 0.00 3.02
581 582 2.266279 CTCCCCAACCCTTACTTCTGA 58.734 52.381 0.00 0.00 0.00 3.27
582 583 2.642807 CTCCCCAACCCTTACTTCTGAA 59.357 50.000 0.00 0.00 0.00 3.02
583 584 2.642807 TCCCCAACCCTTACTTCTGAAG 59.357 50.000 15.59 15.59 0.00 3.02
584 585 2.290960 CCCCAACCCTTACTTCTGAAGG 60.291 54.545 20.61 6.71 42.79 3.46
585 586 2.375509 CCCAACCCTTACTTCTGAAGGT 59.624 50.000 20.61 7.34 41.76 3.50
586 587 3.181433 CCCAACCCTTACTTCTGAAGGTT 60.181 47.826 20.61 12.66 41.76 3.50
587 588 3.821033 CCAACCCTTACTTCTGAAGGTTG 59.179 47.826 22.11 22.11 41.76 3.77
588 589 3.790089 ACCCTTACTTCTGAAGGTTGG 57.210 47.619 20.61 16.77 41.76 3.77
589 590 2.375509 ACCCTTACTTCTGAAGGTTGGG 59.624 50.000 27.09 27.09 41.76 4.12
590 591 2.642807 CCCTTACTTCTGAAGGTTGGGA 59.357 50.000 25.86 7.04 41.76 4.37
591 592 3.307762 CCCTTACTTCTGAAGGTTGGGAG 60.308 52.174 25.86 13.51 41.76 4.30
592 593 3.583086 CCTTACTTCTGAAGGTTGGGAGA 59.417 47.826 20.61 0.00 38.97 3.71
593 594 4.323104 CCTTACTTCTGAAGGTTGGGAGAG 60.323 50.000 20.61 6.90 38.97 3.20
594 595 1.981495 ACTTCTGAAGGTTGGGAGAGG 59.019 52.381 20.61 0.00 0.00 3.69
595 596 1.280421 CTTCTGAAGGTTGGGAGAGGG 59.720 57.143 9.57 0.00 0.00 4.30
596 597 0.193574 TCTGAAGGTTGGGAGAGGGT 59.806 55.000 0.00 0.00 0.00 4.34
597 598 1.068121 CTGAAGGTTGGGAGAGGGTT 58.932 55.000 0.00 0.00 0.00 4.11
598 599 1.425448 CTGAAGGTTGGGAGAGGGTTT 59.575 52.381 0.00 0.00 0.00 3.27
599 600 1.144913 TGAAGGTTGGGAGAGGGTTTG 59.855 52.381 0.00 0.00 0.00 2.93
600 601 1.423921 GAAGGTTGGGAGAGGGTTTGA 59.576 52.381 0.00 0.00 0.00 2.69
601 602 1.068121 AGGTTGGGAGAGGGTTTGAG 58.932 55.000 0.00 0.00 0.00 3.02
602 603 0.038310 GGTTGGGAGAGGGTTTGAGG 59.962 60.000 0.00 0.00 0.00 3.86
603 604 1.064825 GTTGGGAGAGGGTTTGAGGA 58.935 55.000 0.00 0.00 0.00 3.71
604 605 1.636003 GTTGGGAGAGGGTTTGAGGAT 59.364 52.381 0.00 0.00 0.00 3.24
605 606 2.041755 GTTGGGAGAGGGTTTGAGGATT 59.958 50.000 0.00 0.00 0.00 3.01
606 607 1.635487 TGGGAGAGGGTTTGAGGATTG 59.365 52.381 0.00 0.00 0.00 2.67
607 608 1.064389 GGGAGAGGGTTTGAGGATTGG 60.064 57.143 0.00 0.00 0.00 3.16
608 609 1.916181 GGAGAGGGTTTGAGGATTGGA 59.084 52.381 0.00 0.00 0.00 3.53
609 610 2.356227 GGAGAGGGTTTGAGGATTGGAC 60.356 54.545 0.00 0.00 0.00 4.02
610 611 1.636003 AGAGGGTTTGAGGATTGGACC 59.364 52.381 0.00 0.00 0.00 4.46
611 612 3.283020 GGGTTTGAGGATTGGACCC 57.717 57.895 0.00 0.00 42.80 4.46
612 613 0.704664 GGGTTTGAGGATTGGACCCT 59.295 55.000 2.68 0.00 45.20 4.34
613 614 1.077169 GGGTTTGAGGATTGGACCCTT 59.923 52.381 2.68 0.00 45.20 3.95
614 615 2.310647 GGGTTTGAGGATTGGACCCTTA 59.689 50.000 2.68 0.00 45.20 2.69
615 616 3.245479 GGGTTTGAGGATTGGACCCTTAA 60.245 47.826 2.68 0.00 45.20 1.85
616 617 4.412843 GGTTTGAGGATTGGACCCTTAAA 58.587 43.478 0.00 0.00 37.07 1.52
617 618 4.836175 GGTTTGAGGATTGGACCCTTAAAA 59.164 41.667 0.00 0.00 39.80 1.52
618 619 5.305902 GGTTTGAGGATTGGACCCTTAAAAA 59.694 40.000 0.00 0.00 39.80 1.94
642 643 6.928348 AATTTAAGGGTTTGAGGGTTAAGG 57.072 37.500 0.00 0.00 0.00 2.69
643 644 5.666474 TTTAAGGGTTTGAGGGTTAAGGA 57.334 39.130 0.00 0.00 0.00 3.36
644 645 3.808834 AAGGGTTTGAGGGTTAAGGAG 57.191 47.619 0.00 0.00 0.00 3.69
645 646 2.714808 AGGGTTTGAGGGTTAAGGAGT 58.285 47.619 0.00 0.00 0.00 3.85
646 647 3.061369 AGGGTTTGAGGGTTAAGGAGTT 58.939 45.455 0.00 0.00 0.00 3.01
647 648 3.074094 AGGGTTTGAGGGTTAAGGAGTTC 59.926 47.826 0.00 0.00 0.00 3.01
648 649 3.074094 GGGTTTGAGGGTTAAGGAGTTCT 59.926 47.826 0.00 0.00 0.00 3.01
649 650 4.287845 GGGTTTGAGGGTTAAGGAGTTCTA 59.712 45.833 0.00 0.00 0.00 2.10
650 651 5.489249 GGTTTGAGGGTTAAGGAGTTCTAG 58.511 45.833 0.00 0.00 0.00 2.43
651 652 5.012871 GGTTTGAGGGTTAAGGAGTTCTAGT 59.987 44.000 0.00 0.00 0.00 2.57
652 653 5.997384 TTGAGGGTTAAGGAGTTCTAGTC 57.003 43.478 0.00 0.00 0.00 2.59
653 654 5.272405 TGAGGGTTAAGGAGTTCTAGTCT 57.728 43.478 0.00 0.00 0.00 3.24
654 655 6.398655 TGAGGGTTAAGGAGTTCTAGTCTA 57.601 41.667 0.00 0.00 0.00 2.59
655 656 6.186234 TGAGGGTTAAGGAGTTCTAGTCTAC 58.814 44.000 0.00 0.00 0.00 2.59
656 657 6.150034 AGGGTTAAGGAGTTCTAGTCTACA 57.850 41.667 0.00 0.00 0.00 2.74
657 658 5.951148 AGGGTTAAGGAGTTCTAGTCTACAC 59.049 44.000 0.00 0.00 0.00 2.90
658 659 5.163673 GGGTTAAGGAGTTCTAGTCTACACG 60.164 48.000 0.00 0.00 0.00 4.49
659 660 5.645497 GGTTAAGGAGTTCTAGTCTACACGA 59.355 44.000 0.00 0.00 0.00 4.35
660 661 6.318396 GGTTAAGGAGTTCTAGTCTACACGAT 59.682 42.308 0.00 0.00 0.00 3.73
661 662 7.148103 GGTTAAGGAGTTCTAGTCTACACGATT 60.148 40.741 0.00 0.00 0.00 3.34
662 663 6.837471 AAGGAGTTCTAGTCTACACGATTT 57.163 37.500 0.00 0.00 0.00 2.17
663 664 6.837471 AGGAGTTCTAGTCTACACGATTTT 57.163 37.500 0.00 0.00 0.00 1.82
664 665 7.229581 AGGAGTTCTAGTCTACACGATTTTT 57.770 36.000 0.00 0.00 0.00 1.94
709 710 9.816787 AAACAGTTATTTATAAGGGTTTGAGGA 57.183 29.630 9.09 0.00 32.80 3.71
710 711 9.990868 AACAGTTATTTATAAGGGTTTGAGGAT 57.009 29.630 0.00 0.00 0.00 3.24
711 712 9.990868 ACAGTTATTTATAAGGGTTTGAGGATT 57.009 29.630 0.00 0.00 0.00 3.01
719 720 9.725206 TTATAAGGGTTTGAGGATTCTACTAGT 57.275 33.333 0.00 0.00 0.00 2.57
721 722 9.725206 ATAAGGGTTTGAGGATTCTACTAGTAA 57.275 33.333 3.76 0.00 0.00 2.24
722 723 8.625467 AAGGGTTTGAGGATTCTACTAGTAAT 57.375 34.615 3.76 0.00 0.00 1.89
723 724 8.024145 AGGGTTTGAGGATTCTACTAGTAATG 57.976 38.462 3.76 0.00 0.00 1.90
724 725 6.706716 GGGTTTGAGGATTCTACTAGTAATGC 59.293 42.308 3.76 3.06 0.00 3.56
725 726 7.419172 GGGTTTGAGGATTCTACTAGTAATGCT 60.419 40.741 11.05 11.05 36.59 3.79
726 727 7.654116 GGTTTGAGGATTCTACTAGTAATGCTC 59.346 40.741 23.14 23.14 45.52 4.26
824 825 1.215647 CGCTCCAACGGCTAGTTCT 59.784 57.895 0.00 0.00 42.02 3.01
927 932 2.880879 CACACCATCTCCGACGCG 60.881 66.667 3.53 3.53 0.00 6.01
928 933 4.796231 ACACCATCTCCGACGCGC 62.796 66.667 5.73 0.00 0.00 6.86
956 961 2.025441 CTCTCGCGAGCTAGCCAC 59.975 66.667 30.97 5.22 0.00 5.01
1158 1168 4.373116 TGGTTCTGCCTCCGCGTC 62.373 66.667 4.92 0.00 38.08 5.19
1172 1182 0.650512 CGCGTCGGTAAGCAATCAAT 59.349 50.000 0.00 0.00 0.00 2.57
1198 1208 3.263425 TCCATCCTCTACCCTTTCACAAC 59.737 47.826 0.00 0.00 0.00 3.32
1250 1268 1.656652 ATCTGAGACGCCAAATTCGG 58.343 50.000 0.00 0.00 0.00 4.30
1356 1376 0.582005 GCTTCGTCATGCGGGTAATC 59.418 55.000 9.16 0.00 41.72 1.75
1395 1415 0.030773 CTCCCGAATCGAATCTCGCA 59.969 55.000 3.36 0.00 40.21 5.10
1425 1445 2.245096 GTTTGATTGATGCGTGACTGC 58.755 47.619 0.00 0.00 0.00 4.40
1458 1478 3.762674 GGAACCGAGTTCTGATCCC 57.237 57.895 13.94 0.00 41.70 3.85
1460 1480 1.137282 GGAACCGAGTTCTGATCCCTC 59.863 57.143 13.94 0.00 41.70 4.30
1506 1526 3.357079 CCCAACGTGAGGCTGCAC 61.357 66.667 0.50 0.00 35.46 4.57
1549 1569 2.583593 GGTGCGCGTCTCTGATCC 60.584 66.667 8.43 0.00 0.00 3.36
1550 1570 2.181777 GTGCGCGTCTCTGATCCA 59.818 61.111 8.43 0.00 0.00 3.41
1555 1575 1.004504 GCGCGTCTCTGATCCAAATTC 60.005 52.381 8.43 0.00 0.00 2.17
1558 1578 3.000724 CGCGTCTCTGATCCAAATTCTTC 59.999 47.826 0.00 0.00 0.00 2.87
1560 1580 4.633565 GCGTCTCTGATCCAAATTCTTCTT 59.366 41.667 0.00 0.00 0.00 2.52
1573 1593 1.254026 TCTTCTTCTTTCTCGCCCGA 58.746 50.000 0.00 0.00 0.00 5.14
1827 1847 1.226831 CGCGAGGAAGAAGGCTCTC 60.227 63.158 0.00 0.00 0.00 3.20
1950 1970 2.193536 GGTGGTGAAGGCGCTGTTT 61.194 57.895 7.64 0.00 0.00 2.83
2016 2036 4.803426 GTGGCCGAGGTCTGCTCG 62.803 72.222 0.00 0.00 43.19 5.03
2142 2162 1.130749 GTGAAGAGCGCGAAGAGAGTA 59.869 52.381 12.10 0.00 0.00 2.59
2156 2176 2.180276 GAGAGTACAGGAGCCAAGGAA 58.820 52.381 0.00 0.00 0.00 3.36
2178 2201 6.262720 GGAATGGGAAGAAGAAGATGATCTTG 59.737 42.308 13.18 0.00 39.70 3.02
2214 2237 0.730494 GCGCCAATGCTGAAACAGAC 60.730 55.000 0.00 0.00 32.44 3.51
2215 2238 0.592637 CGCCAATGCTGAAACAGACA 59.407 50.000 2.81 1.43 32.44 3.41
2219 2242 3.243501 GCCAATGCTGAAACAGACAAAGA 60.244 43.478 2.81 0.00 32.44 2.52
2253 2276 0.438830 GTGAGAACATCAACGCGGAC 59.561 55.000 12.47 0.00 40.43 4.79
2311 2334 0.895559 GCAAGAACCCAAGGAGGTGG 60.896 60.000 0.00 0.00 40.05 4.61
2336 2359 1.677552 GATCACGGGTTGAGGTGGT 59.322 57.895 0.00 0.00 37.77 4.16
2340 2363 2.347490 CGGGTTGAGGTGGTGGAG 59.653 66.667 0.00 0.00 0.00 3.86
2385 2408 1.741401 CGACAAGGAGAATGCGCCA 60.741 57.895 4.18 0.00 36.29 5.69
2424 2447 0.393537 AGCAAGCCTTGAATCGGGAG 60.394 55.000 9.04 0.00 0.00 4.30
2425 2448 1.379642 GCAAGCCTTGAATCGGGAGG 61.380 60.000 9.04 0.00 0.00 4.30
2426 2449 0.253044 CAAGCCTTGAATCGGGAGGA 59.747 55.000 0.00 0.00 32.11 3.71
2427 2450 1.133976 CAAGCCTTGAATCGGGAGGAT 60.134 52.381 0.00 0.00 36.78 3.24
2504 2530 6.000219 AGGTACTGAAACTCTGACGTTAGTA 59.000 40.000 7.27 0.00 37.18 1.82
2510 2536 6.741109 TGAAACTCTGACGTTAGTAATGTGA 58.259 36.000 12.50 3.36 0.00 3.58
2607 2636 2.813754 GCAGAACAAGGTAGTGAATGCA 59.186 45.455 0.00 0.00 0.00 3.96
2625 2654 4.952704 GAGCAGGGAGGAAAGCTC 57.047 61.111 0.00 0.00 45.50 4.09
2631 2660 2.815589 GCAGGGAGGAAAGCTCAAGAAA 60.816 50.000 0.00 0.00 0.00 2.52
2690 2719 5.968254 TGTGAGTTATGATTGCATTGCATT 58.032 33.333 12.95 9.08 38.76 3.56
2695 2724 3.897141 ATGATTGCATTGCATTCCACA 57.103 38.095 23.57 14.82 38.76 4.17
2698 2728 5.340439 TGATTGCATTGCATTCCACATTA 57.660 34.783 23.57 5.39 38.76 1.90
2700 2730 3.523606 TGCATTGCATTCCACATTACC 57.476 42.857 7.38 0.00 31.71 2.85
2722 2752 6.888105 ACCTGTTTTTGTGAAGGATTTTCAT 58.112 32.000 0.00 0.00 33.78 2.57
2741 2772 1.609208 TTCAGTTGCTGAAAGGCCTC 58.391 50.000 5.23 0.00 45.84 4.70
2824 2855 4.913126 GGTCGCCGAGAAGAACAT 57.087 55.556 0.00 0.00 0.00 2.71
2842 2873 0.395311 ATCATGCCAGCACTGAAGGG 60.395 55.000 0.00 0.00 0.00 3.95
2934 2970 3.131396 CACCTGTGGTTACTCACTGTTC 58.869 50.000 5.78 0.00 38.40 3.18
3014 3050 3.013921 AGAAAAACTGACTTGTGGCGAA 58.986 40.909 0.00 0.00 0.00 4.70
3040 3076 1.002624 TGAGCATTTCCCGGTCCAC 60.003 57.895 0.00 0.00 0.00 4.02
3072 3108 8.927675 TTAGTGGTGGTACAATTTAGAAACAT 57.072 30.769 0.00 0.00 44.16 2.71
3162 3202 3.751698 GTCGGCTTGGTGAATCTAAAACT 59.248 43.478 0.00 0.00 0.00 2.66
3349 3395 9.146984 ACATTGATTTCTGAATTTTAGCACATG 57.853 29.630 0.00 0.00 0.00 3.21
3358 3404 9.006839 TCTGAATTTTAGCACATGATGATATCC 57.993 33.333 0.00 0.00 0.00 2.59
3399 3471 0.108585 GGTTTCACAGCACCCTCTCA 59.891 55.000 0.00 0.00 0.00 3.27
3529 3601 4.821805 GTCTGTTCCATCCAAAAGACTGAA 59.178 41.667 0.00 0.00 33.02 3.02
3571 3643 5.659440 ACTGGTTTTGTGAGTTTTGTCAT 57.341 34.783 0.00 0.00 0.00 3.06
3578 3650 8.352942 GGTTTTGTGAGTTTTGTCATCTAGAAT 58.647 33.333 0.00 0.00 0.00 2.40
3619 3697 0.321122 GCCAGGAACTCTCACACCAG 60.321 60.000 0.00 0.00 34.60 4.00
3752 3830 7.255942 CCCAGAAGAAATTTAATTCAGTGGTGT 60.256 37.037 14.69 0.00 29.99 4.16
3771 3849 7.016170 AGTGGTGTAATGTGTATCTATGGCATA 59.984 37.037 7.06 7.06 0.00 3.14
3775 3853 9.144747 GTGTAATGTGTATCTATGGCATAGAAG 57.855 37.037 33.94 14.53 44.41 2.85
3780 3858 9.712305 ATGTGTATCTATGGCATAGAAGTAAAC 57.288 33.333 33.94 26.80 44.41 2.01
3782 3860 9.197694 GTGTATCTATGGCATAGAAGTAAACTG 57.802 37.037 33.94 8.70 44.41 3.16
3783 3861 8.367911 TGTATCTATGGCATAGAAGTAAACTGG 58.632 37.037 33.94 8.22 44.41 4.00
3784 3862 6.174720 TCTATGGCATAGAAGTAAACTGGG 57.825 41.667 29.96 5.15 38.85 4.45
3785 3863 5.903010 TCTATGGCATAGAAGTAAACTGGGA 59.097 40.000 29.96 7.34 38.85 4.37
3786 3864 4.487714 TGGCATAGAAGTAAACTGGGAG 57.512 45.455 0.00 0.00 0.00 4.30
3787 3865 3.206964 GGCATAGAAGTAAACTGGGAGC 58.793 50.000 0.00 0.00 0.00 4.70
3789 3867 3.873952 GCATAGAAGTAAACTGGGAGCTG 59.126 47.826 0.00 0.00 0.00 4.24
3793 3916 0.326264 AGTAAACTGGGAGCTGCAGG 59.674 55.000 17.12 0.99 0.00 4.85
3799 3924 3.650950 GGGAGCTGCAGGGTTCCA 61.651 66.667 17.12 0.00 40.71 3.53
3802 3927 1.452833 GAGCTGCAGGGTTCCATCC 60.453 63.158 17.12 0.00 0.00 3.51
3836 3961 7.776107 TGTTTCTGTACCATGAAATTTGTGAA 58.224 30.769 0.00 0.00 35.13 3.18
3868 3993 4.739587 TTCTTTTGTTTTGGTACACCCC 57.260 40.909 0.00 0.00 39.29 4.95
3878 4015 1.028130 GGTACACCCCTACTAGACGC 58.972 60.000 0.00 0.00 0.00 5.19
3890 4027 6.289064 CCCTACTAGACGCTTATTCCAAATT 58.711 40.000 0.00 0.00 0.00 1.82
3891 4028 7.439381 CCCTACTAGACGCTTATTCCAAATTA 58.561 38.462 0.00 0.00 0.00 1.40
3893 4030 8.979574 CCTACTAGACGCTTATTCCAAATTAAG 58.020 37.037 0.00 0.00 0.00 1.85
3894 4031 7.247929 ACTAGACGCTTATTCCAAATTAAGC 57.752 36.000 0.00 4.92 44.33 3.09
3895 4032 6.821665 ACTAGACGCTTATTCCAAATTAAGCA 59.178 34.615 13.29 0.00 46.82 3.91
3896 4033 6.699575 AGACGCTTATTCCAAATTAAGCAT 57.300 33.333 13.29 0.00 46.82 3.79
3897 4034 6.729187 AGACGCTTATTCCAAATTAAGCATC 58.271 36.000 13.29 8.54 46.82 3.91
3898 4035 6.318648 AGACGCTTATTCCAAATTAAGCATCA 59.681 34.615 11.70 0.00 46.82 3.07
3899 4036 6.862209 ACGCTTATTCCAAATTAAGCATCAA 58.138 32.000 13.29 0.00 46.82 2.57
3900 4037 7.491682 ACGCTTATTCCAAATTAAGCATCAAT 58.508 30.769 13.29 0.00 46.82 2.57
3902 4039 9.462174 CGCTTATTCCAAATTAAGCATCAATTA 57.538 29.630 13.29 0.00 46.82 1.40
3913 4050 9.480053 AATTAAGCATCAATTAATTTGGATCGG 57.520 29.630 0.00 0.00 38.89 4.18
3914 4051 6.713762 AAGCATCAATTAATTTGGATCGGA 57.286 33.333 0.00 0.00 35.92 4.55
3915 4052 6.323203 AGCATCAATTAATTTGGATCGGAG 57.677 37.500 0.00 0.00 35.92 4.63
3917 4054 5.565439 GCATCAATTAATTTGGATCGGAGGG 60.565 44.000 0.00 0.00 35.92 4.30
3919 4056 5.376625 TCAATTAATTTGGATCGGAGGGAG 58.623 41.667 0.00 0.00 35.92 4.30
3944 4092 9.185680 AGTACAAAGTTAAGAATTGTGTTCCTT 57.814 29.630 9.54 0.00 37.78 3.36
3945 4093 9.447040 GTACAAAGTTAAGAATTGTGTTCCTTC 57.553 33.333 9.54 0.00 37.78 3.46
3946 4094 7.489160 ACAAAGTTAAGAATTGTGTTCCTTCC 58.511 34.615 0.00 0.00 36.03 3.46
3947 4095 7.342026 ACAAAGTTAAGAATTGTGTTCCTTCCT 59.658 33.333 0.00 0.00 36.03 3.36
3953 4101 4.962362 AGAATTGTGTTCCTTCCTTGGTTT 59.038 37.500 0.00 0.00 0.00 3.27
3976 4132 7.769272 TTGAAATTGTGAAATCCAAACTGTC 57.231 32.000 0.00 0.00 0.00 3.51
3978 4134 5.867903 AATTGTGAAATCCAAACTGTCCA 57.132 34.783 0.00 0.00 0.00 4.02
4006 4162 9.481340 GAAAATGAAAATTCCTAATATGGAGGC 57.519 33.333 0.00 0.00 37.43 4.70
4023 4179 1.149923 AGGCCCCCTTCAATTTGAACT 59.850 47.619 7.74 0.45 32.21 3.01
4025 4181 2.028112 GGCCCCCTTCAATTTGAACTTC 60.028 50.000 7.74 0.00 32.21 3.01
4107 4265 3.348647 ACTGCACACAATATAGCACCA 57.651 42.857 0.00 0.00 32.87 4.17
4119 4277 9.401873 CACAATATAGCACCAATATGAACAATG 57.598 33.333 0.00 0.00 0.00 2.82
4145 4314 8.812329 GTTGCTGATTTACAAATTTTACACACA 58.188 29.630 0.00 0.00 0.00 3.72
4162 4331 9.509855 TTTACACACAATTACAGTTGATCAAAC 57.490 29.630 10.35 4.88 39.24 2.93
4172 4341 4.393062 ACAGTTGATCAAACGATTGCTAGG 59.607 41.667 10.35 0.00 44.04 3.02
4178 4347 1.135689 CAAACGATTGCTAGGTGGTGC 60.136 52.381 0.00 0.00 0.00 5.01
4182 4351 4.057224 TTGCTAGGTGGTGCAACG 57.943 55.556 0.00 0.00 43.17 4.10
4184 4353 0.036164 TTGCTAGGTGGTGCAACGAT 59.964 50.000 0.00 0.00 43.17 3.73
4187 4356 1.135689 GCTAGGTGGTGCAACGATTTG 60.136 52.381 0.00 0.00 38.12 2.32
4188 4357 2.151202 CTAGGTGGTGCAACGATTTGT 58.849 47.619 0.00 0.00 38.12 2.83
4189 4358 0.667993 AGGTGGTGCAACGATTTGTG 59.332 50.000 0.00 0.00 38.12 3.33
4190 4359 0.939106 GGTGGTGCAACGATTTGTGC 60.939 55.000 0.00 0.00 38.12 4.57
4191 4360 0.248825 GTGGTGCAACGATTTGTGCA 60.249 50.000 0.00 0.00 38.12 4.57
4210 4379 2.021457 CACCGGGTATCAATGGGAAAC 58.979 52.381 6.32 0.00 0.00 2.78
4213 4382 3.295973 CCGGGTATCAATGGGAAACAAT 58.704 45.455 0.00 0.00 0.00 2.71
4296 4466 8.156994 TGTGTATTAACCAAAGTTTAGTGTCC 57.843 34.615 0.00 0.00 37.42 4.02
4298 4468 4.816786 TTAACCAAAGTTTAGTGTCCGC 57.183 40.909 0.00 0.00 37.42 5.54
4357 4536 1.225376 TGTTTGTAGAACGCCTGCCG 61.225 55.000 0.00 0.00 44.21 5.69
4399 4578 5.783111 CGTCACCATATAACATCATGAGGA 58.217 41.667 15.42 0.00 0.00 3.71
4427 4635 4.225984 CAACAACATGAATACACGGTTGG 58.774 43.478 0.00 2.47 43.05 3.77
4509 4717 9.754382 CATCTATGCTATTTGCCTTTACAATTT 57.246 29.630 0.00 0.00 42.00 1.82
4511 4719 9.585099 TCTATGCTATTTGCCTTTACAATTTTG 57.415 29.630 0.00 0.00 42.00 2.44
4512 4720 9.369904 CTATGCTATTTGCCTTTACAATTTTGT 57.630 29.630 1.08 1.08 42.20 2.83
4514 4722 9.717942 ATGCTATTTGCCTTTACAATTTTGTTA 57.282 25.926 0.63 0.00 40.76 2.41
4515 4723 8.983724 TGCTATTTGCCTTTACAATTTTGTTAC 58.016 29.630 0.63 0.00 40.76 2.50
4516 4724 8.983724 GCTATTTGCCTTTACAATTTTGTTACA 58.016 29.630 0.63 0.00 37.92 2.41
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 4.684134 CCCACCCCTTGGCCACTG 62.684 72.222 3.88 0.28 45.37 3.66
19 20 4.938756 TCCCACCCCTTGGCCACT 62.939 66.667 3.88 0.00 45.37 4.00
20 21 4.366684 CTCCCACCCCTTGGCCAC 62.367 72.222 3.88 0.00 45.37 5.01
512 513 2.306255 TTATCCTCGCGCCAACTCCC 62.306 60.000 0.00 0.00 0.00 4.30
513 514 1.143183 TTATCCTCGCGCCAACTCC 59.857 57.895 0.00 0.00 0.00 3.85
514 515 1.152383 GGTTATCCTCGCGCCAACTC 61.152 60.000 0.00 0.00 0.00 3.01
515 516 1.153429 GGTTATCCTCGCGCCAACT 60.153 57.895 0.00 0.00 0.00 3.16
516 517 2.522638 CGGTTATCCTCGCGCCAAC 61.523 63.158 0.00 0.26 0.00 3.77
517 518 2.202824 CGGTTATCCTCGCGCCAA 60.203 61.111 0.00 0.00 0.00 4.52
518 519 4.884257 GCGGTTATCCTCGCGCCA 62.884 66.667 0.00 0.00 42.48 5.69
523 524 0.174845 TCACTTGGCGGTTATCCTCG 59.825 55.000 0.00 0.00 0.00 4.63
524 525 1.473434 CCTCACTTGGCGGTTATCCTC 60.473 57.143 0.00 0.00 0.00 3.71
525 526 0.541863 CCTCACTTGGCGGTTATCCT 59.458 55.000 0.00 0.00 0.00 3.24
526 527 0.463833 CCCTCACTTGGCGGTTATCC 60.464 60.000 0.00 0.00 0.00 2.59
527 528 0.252197 ACCCTCACTTGGCGGTTATC 59.748 55.000 0.00 0.00 0.00 1.75
528 529 0.696501 AACCCTCACTTGGCGGTTAT 59.303 50.000 0.00 0.00 36.83 1.89
529 530 0.250553 CAACCCTCACTTGGCGGTTA 60.251 55.000 0.00 0.00 36.45 2.85
530 531 1.528309 CAACCCTCACTTGGCGGTT 60.528 57.895 0.00 0.00 39.18 4.44
531 532 2.113139 CAACCCTCACTTGGCGGT 59.887 61.111 0.00 0.00 0.00 5.68
532 533 2.672996 CCAACCCTCACTTGGCGG 60.673 66.667 0.00 0.00 32.03 6.13
533 534 2.484287 ATCCCAACCCTCACTTGGCG 62.484 60.000 0.00 0.00 37.45 5.69
534 535 0.623723 TATCCCAACCCTCACTTGGC 59.376 55.000 0.00 0.00 37.45 4.52
535 536 1.212935 CCTATCCCAACCCTCACTTGG 59.787 57.143 0.00 0.00 38.37 3.61
536 537 1.916181 ACCTATCCCAACCCTCACTTG 59.084 52.381 0.00 0.00 0.00 3.16
537 538 2.361085 ACCTATCCCAACCCTCACTT 57.639 50.000 0.00 0.00 0.00 3.16
538 539 2.361085 AACCTATCCCAACCCTCACT 57.639 50.000 0.00 0.00 0.00 3.41
539 540 3.089284 CAAAACCTATCCCAACCCTCAC 58.911 50.000 0.00 0.00 0.00 3.51
540 541 2.556559 GCAAAACCTATCCCAACCCTCA 60.557 50.000 0.00 0.00 0.00 3.86
541 542 2.100197 GCAAAACCTATCCCAACCCTC 58.900 52.381 0.00 0.00 0.00 4.30
542 543 1.716503 AGCAAAACCTATCCCAACCCT 59.283 47.619 0.00 0.00 0.00 4.34
543 544 2.100197 GAGCAAAACCTATCCCAACCC 58.900 52.381 0.00 0.00 0.00 4.11
544 545 2.100197 GGAGCAAAACCTATCCCAACC 58.900 52.381 0.00 0.00 0.00 3.77
549 550 2.100197 GTTGGGGAGCAAAACCTATCC 58.900 52.381 0.00 0.00 0.00 2.59
550 551 2.100197 GGTTGGGGAGCAAAACCTATC 58.900 52.381 0.00 0.00 40.22 2.08
551 552 1.273041 GGGTTGGGGAGCAAAACCTAT 60.273 52.381 4.00 0.00 42.50 2.57
552 553 0.113580 GGGTTGGGGAGCAAAACCTA 59.886 55.000 4.00 0.00 42.50 3.08
553 554 1.152333 GGGTTGGGGAGCAAAACCT 60.152 57.895 4.00 0.00 42.50 3.50
554 555 0.762842 AAGGGTTGGGGAGCAAAACC 60.763 55.000 0.00 0.00 42.21 3.27
555 556 1.616865 GTAAGGGTTGGGGAGCAAAAC 59.383 52.381 0.00 0.00 0.00 2.43
556 557 1.501604 AGTAAGGGTTGGGGAGCAAAA 59.498 47.619 0.00 0.00 0.00 2.44
557 558 1.154430 AGTAAGGGTTGGGGAGCAAA 58.846 50.000 0.00 0.00 0.00 3.68
558 559 1.074889 GAAGTAAGGGTTGGGGAGCAA 59.925 52.381 0.00 0.00 0.00 3.91
559 560 0.696501 GAAGTAAGGGTTGGGGAGCA 59.303 55.000 0.00 0.00 0.00 4.26
560 561 0.992695 AGAAGTAAGGGTTGGGGAGC 59.007 55.000 0.00 0.00 0.00 4.70
561 562 2.266279 TCAGAAGTAAGGGTTGGGGAG 58.734 52.381 0.00 0.00 0.00 4.30
562 563 2.426431 TCAGAAGTAAGGGTTGGGGA 57.574 50.000 0.00 0.00 0.00 4.81
563 564 2.290960 CCTTCAGAAGTAAGGGTTGGGG 60.291 54.545 9.41 0.00 39.94 4.96
564 565 2.375509 ACCTTCAGAAGTAAGGGTTGGG 59.624 50.000 9.41 0.00 46.56 4.12
565 566 3.790089 ACCTTCAGAAGTAAGGGTTGG 57.210 47.619 9.41 0.00 46.56 3.77
566 567 3.821033 CCAACCTTCAGAAGTAAGGGTTG 59.179 47.826 18.32 18.32 41.38 3.77
567 568 3.181433 CCCAACCTTCAGAAGTAAGGGTT 60.181 47.826 17.25 9.45 41.38 4.11
568 569 2.375509 CCCAACCTTCAGAAGTAAGGGT 59.624 50.000 17.25 4.54 45.12 4.34
569 570 2.642807 TCCCAACCTTCAGAAGTAAGGG 59.357 50.000 18.59 18.59 46.56 3.95
571 572 4.323104 CCTCTCCCAACCTTCAGAAGTAAG 60.323 50.000 9.41 0.00 0.00 2.34
572 573 3.583086 CCTCTCCCAACCTTCAGAAGTAA 59.417 47.826 9.41 0.00 0.00 2.24
573 574 3.173965 CCTCTCCCAACCTTCAGAAGTA 58.826 50.000 9.41 0.00 0.00 2.24
574 575 1.981495 CCTCTCCCAACCTTCAGAAGT 59.019 52.381 9.41 0.00 0.00 3.01
575 576 1.280421 CCCTCTCCCAACCTTCAGAAG 59.720 57.143 2.78 2.78 0.00 2.85
576 577 1.362224 CCCTCTCCCAACCTTCAGAA 58.638 55.000 0.00 0.00 0.00 3.02
577 578 0.193574 ACCCTCTCCCAACCTTCAGA 59.806 55.000 0.00 0.00 0.00 3.27
578 579 1.068121 AACCCTCTCCCAACCTTCAG 58.932 55.000 0.00 0.00 0.00 3.02
579 580 1.144913 CAAACCCTCTCCCAACCTTCA 59.855 52.381 0.00 0.00 0.00 3.02
580 581 1.423921 TCAAACCCTCTCCCAACCTTC 59.576 52.381 0.00 0.00 0.00 3.46
581 582 1.425448 CTCAAACCCTCTCCCAACCTT 59.575 52.381 0.00 0.00 0.00 3.50
582 583 1.068121 CTCAAACCCTCTCCCAACCT 58.932 55.000 0.00 0.00 0.00 3.50
583 584 0.038310 CCTCAAACCCTCTCCCAACC 59.962 60.000 0.00 0.00 0.00 3.77
584 585 1.064825 TCCTCAAACCCTCTCCCAAC 58.935 55.000 0.00 0.00 0.00 3.77
585 586 2.041620 CAATCCTCAAACCCTCTCCCAA 59.958 50.000 0.00 0.00 0.00 4.12
586 587 1.635487 CAATCCTCAAACCCTCTCCCA 59.365 52.381 0.00 0.00 0.00 4.37
587 588 1.064389 CCAATCCTCAAACCCTCTCCC 60.064 57.143 0.00 0.00 0.00 4.30
588 589 1.916181 TCCAATCCTCAAACCCTCTCC 59.084 52.381 0.00 0.00 0.00 3.71
589 590 2.356227 GGTCCAATCCTCAAACCCTCTC 60.356 54.545 0.00 0.00 0.00 3.20
590 591 1.636003 GGTCCAATCCTCAAACCCTCT 59.364 52.381 0.00 0.00 0.00 3.69
591 592 1.341089 GGGTCCAATCCTCAAACCCTC 60.341 57.143 1.59 0.00 45.12 4.30
592 593 0.704664 GGGTCCAATCCTCAAACCCT 59.295 55.000 1.59 0.00 45.12 4.34
593 594 3.283020 GGGTCCAATCCTCAAACCC 57.717 57.895 0.00 0.00 42.62 4.11
594 595 2.604912 AAGGGTCCAATCCTCAAACC 57.395 50.000 0.00 0.00 32.59 3.27
595 596 6.413783 TTTTTAAGGGTCCAATCCTCAAAC 57.586 37.500 0.00 0.00 32.59 2.93
616 617 8.215050 CCTTAACCCTCAAACCCTTAAATTTTT 58.785 33.333 0.00 0.00 0.00 1.94
617 618 7.569485 TCCTTAACCCTCAAACCCTTAAATTTT 59.431 33.333 0.00 0.00 0.00 1.82
618 619 7.077095 TCCTTAACCCTCAAACCCTTAAATTT 58.923 34.615 0.00 0.00 0.00 1.82
619 620 6.626238 TCCTTAACCCTCAAACCCTTAAATT 58.374 36.000 0.00 0.00 0.00 1.82
620 621 6.183361 ACTCCTTAACCCTCAAACCCTTAAAT 60.183 38.462 0.00 0.00 0.00 1.40
621 622 5.134850 ACTCCTTAACCCTCAAACCCTTAAA 59.865 40.000 0.00 0.00 0.00 1.52
622 623 4.666431 ACTCCTTAACCCTCAAACCCTTAA 59.334 41.667 0.00 0.00 0.00 1.85
623 624 4.245308 ACTCCTTAACCCTCAAACCCTTA 58.755 43.478 0.00 0.00 0.00 2.69
624 625 3.061369 ACTCCTTAACCCTCAAACCCTT 58.939 45.455 0.00 0.00 0.00 3.95
625 626 2.714808 ACTCCTTAACCCTCAAACCCT 58.285 47.619 0.00 0.00 0.00 4.34
626 627 3.074094 AGAACTCCTTAACCCTCAAACCC 59.926 47.826 0.00 0.00 0.00 4.11
627 628 4.368565 AGAACTCCTTAACCCTCAAACC 57.631 45.455 0.00 0.00 0.00 3.27
628 629 6.014413 AGACTAGAACTCCTTAACCCTCAAAC 60.014 42.308 0.00 0.00 0.00 2.93
629 630 6.082707 AGACTAGAACTCCTTAACCCTCAAA 58.917 40.000 0.00 0.00 0.00 2.69
630 631 5.652324 AGACTAGAACTCCTTAACCCTCAA 58.348 41.667 0.00 0.00 0.00 3.02
631 632 5.272405 AGACTAGAACTCCTTAACCCTCA 57.728 43.478 0.00 0.00 0.00 3.86
632 633 6.095300 GTGTAGACTAGAACTCCTTAACCCTC 59.905 46.154 0.00 0.00 0.00 4.30
633 634 5.951148 GTGTAGACTAGAACTCCTTAACCCT 59.049 44.000 0.00 0.00 0.00 4.34
634 635 5.163673 CGTGTAGACTAGAACTCCTTAACCC 60.164 48.000 0.00 0.00 0.00 4.11
635 636 5.645497 TCGTGTAGACTAGAACTCCTTAACC 59.355 44.000 0.00 0.00 0.00 2.85
636 637 6.734104 TCGTGTAGACTAGAACTCCTTAAC 57.266 41.667 0.00 0.00 0.00 2.01
637 638 7.934855 AATCGTGTAGACTAGAACTCCTTAA 57.065 36.000 0.00 0.00 0.00 1.85
638 639 7.934855 AAATCGTGTAGACTAGAACTCCTTA 57.065 36.000 0.00 0.00 0.00 2.69
639 640 6.837471 AAATCGTGTAGACTAGAACTCCTT 57.163 37.500 0.00 0.00 0.00 3.36
640 641 6.837471 AAAATCGTGTAGACTAGAACTCCT 57.163 37.500 0.00 0.00 0.00 3.69
683 684 9.816787 TCCTCAAACCCTTATAAATAACTGTTT 57.183 29.630 0.00 0.00 0.00 2.83
684 685 9.990868 ATCCTCAAACCCTTATAAATAACTGTT 57.009 29.630 0.00 0.00 0.00 3.16
685 686 9.990868 AATCCTCAAACCCTTATAAATAACTGT 57.009 29.630 0.00 0.00 0.00 3.55
693 694 9.725206 ACTAGTAGAATCCTCAAACCCTTATAA 57.275 33.333 3.59 0.00 0.00 0.98
695 696 9.725206 TTACTAGTAGAATCCTCAAACCCTTAT 57.275 33.333 3.59 0.00 0.00 1.73
696 697 9.725206 ATTACTAGTAGAATCCTCAAACCCTTA 57.275 33.333 3.59 0.00 0.00 2.69
697 698 8.487028 CATTACTAGTAGAATCCTCAAACCCTT 58.513 37.037 3.59 0.00 0.00 3.95
698 699 7.419172 GCATTACTAGTAGAATCCTCAAACCCT 60.419 40.741 3.59 0.00 0.00 4.34
699 700 6.706716 GCATTACTAGTAGAATCCTCAAACCC 59.293 42.308 3.59 0.00 0.00 4.11
700 701 7.501844 AGCATTACTAGTAGAATCCTCAAACC 58.498 38.462 3.59 0.00 0.00 3.27
701 702 8.417884 AGAGCATTACTAGTAGAATCCTCAAAC 58.582 37.037 10.57 0.00 0.00 2.93
702 703 8.540507 AGAGCATTACTAGTAGAATCCTCAAA 57.459 34.615 10.57 0.00 0.00 2.69
703 704 8.540507 AAGAGCATTACTAGTAGAATCCTCAA 57.459 34.615 10.57 0.00 0.00 3.02
704 705 9.290988 CTAAGAGCATTACTAGTAGAATCCTCA 57.709 37.037 10.57 0.00 0.00 3.86
705 706 9.292195 ACTAAGAGCATTACTAGTAGAATCCTC 57.708 37.037 3.59 2.25 0.00 3.71
706 707 9.649316 AACTAAGAGCATTACTAGTAGAATCCT 57.351 33.333 3.59 0.00 0.00 3.24
717 718 9.757227 GAGATGATGTAAACTAAGAGCATTACT 57.243 33.333 0.00 0.00 31.24 2.24
718 719 9.757227 AGAGATGATGTAAACTAAGAGCATTAC 57.243 33.333 0.00 0.00 0.00 1.89
720 721 9.678260 AAAGAGATGATGTAAACTAAGAGCATT 57.322 29.630 0.00 0.00 0.00 3.56
737 738 6.479990 CGATGTGGCAGTAAATAAAGAGATGA 59.520 38.462 0.00 0.00 0.00 2.92
854 855 2.435938 GCGAGTTGGGCGATGGAA 60.436 61.111 0.00 0.00 0.00 3.53
901 906 2.890474 GATGGTGTGCTACGGCGG 60.890 66.667 13.24 0.00 42.25 6.13
954 959 0.029567 GGATCGACGGTCTAGCTGTG 59.970 60.000 8.23 0.00 36.69 3.66
956 961 1.101635 TGGGATCGACGGTCTAGCTG 61.102 60.000 8.23 0.00 0.00 4.24
1158 1168 4.898829 TGGATGAATTGATTGCTTACCG 57.101 40.909 0.00 0.00 0.00 4.02
1172 1182 4.164221 GTGAAAGGGTAGAGGATGGATGAA 59.836 45.833 0.00 0.00 0.00 2.57
1356 1376 0.327259 AGCGATGGATGGATGGATGG 59.673 55.000 0.00 0.00 0.00 3.51
1395 1415 3.120060 GCATCAATCAAACACGAGAAGCT 60.120 43.478 0.00 0.00 0.00 3.74
1425 1445 1.445410 TTCCGTCAGCCGTCGAATG 60.445 57.895 0.00 0.00 33.66 2.67
1522 1542 3.777925 CGCGCACCTCTGGTTTCG 61.778 66.667 8.75 0.00 31.02 3.46
1549 1569 4.670221 CGGGCGAGAAAGAAGAAGAATTTG 60.670 45.833 0.00 0.00 0.00 2.32
1550 1570 3.437049 CGGGCGAGAAAGAAGAAGAATTT 59.563 43.478 0.00 0.00 0.00 1.82
1555 1575 1.351153 GTCGGGCGAGAAAGAAGAAG 58.649 55.000 0.00 0.00 0.00 2.85
1558 1578 2.445438 GCGTCGGGCGAGAAAGAAG 61.445 63.158 6.02 0.00 44.77 2.85
1560 1580 4.430765 GGCGTCGGGCGAGAAAGA 62.431 66.667 6.02 0.00 44.92 2.52
1573 1593 4.028490 TCCAATTCAGGCCGGCGT 62.028 61.111 22.54 20.09 0.00 5.68
1827 1847 4.641645 TTGCTCCTGGGCGTGGTG 62.642 66.667 0.00 0.00 34.52 4.17
1950 1970 0.107703 CCTTCTTGGGCGTGCTCATA 60.108 55.000 0.00 0.00 0.00 2.15
2016 2036 3.688673 CCAGGTTGAGCTTCTTCATCTTC 59.311 47.826 0.00 0.00 0.00 2.87
2122 2142 0.109504 ACTCTCTTCGCGCTCTTCAC 60.110 55.000 5.56 0.00 0.00 3.18
2123 2143 1.130749 GTACTCTCTTCGCGCTCTTCA 59.869 52.381 5.56 0.00 0.00 3.02
2124 2144 1.130749 TGTACTCTCTTCGCGCTCTTC 59.869 52.381 5.56 0.00 0.00 2.87
2125 2145 1.131504 CTGTACTCTCTTCGCGCTCTT 59.868 52.381 5.56 0.00 0.00 2.85
2126 2146 0.730265 CTGTACTCTCTTCGCGCTCT 59.270 55.000 5.56 0.00 0.00 4.09
2127 2147 0.248296 CCTGTACTCTCTTCGCGCTC 60.248 60.000 5.56 0.00 0.00 5.03
2128 2148 0.677098 TCCTGTACTCTCTTCGCGCT 60.677 55.000 5.56 0.00 0.00 5.92
2129 2149 0.248296 CTCCTGTACTCTCTTCGCGC 60.248 60.000 0.00 0.00 0.00 6.86
2130 2150 0.248296 GCTCCTGTACTCTCTTCGCG 60.248 60.000 0.00 0.00 0.00 5.87
2131 2151 0.101579 GGCTCCTGTACTCTCTTCGC 59.898 60.000 0.00 0.00 0.00 4.70
2132 2152 1.464734 TGGCTCCTGTACTCTCTTCG 58.535 55.000 0.00 0.00 0.00 3.79
2133 2153 2.167487 CCTTGGCTCCTGTACTCTCTTC 59.833 54.545 0.00 0.00 0.00 2.87
2142 2162 0.846427 TCCCATTCCTTGGCTCCTGT 60.846 55.000 0.00 0.00 44.97 4.00
2156 2176 5.398809 CCCAAGATCATCTTCTTCTTCCCAT 60.399 44.000 0.00 0.00 33.78 4.00
2167 2187 2.636830 CGAACAGCCCAAGATCATCTT 58.363 47.619 0.00 0.00 37.14 2.40
2168 2188 1.134280 CCGAACAGCCCAAGATCATCT 60.134 52.381 0.00 0.00 0.00 2.90
2169 2189 1.303309 CCGAACAGCCCAAGATCATC 58.697 55.000 0.00 0.00 0.00 2.92
2178 2201 2.485122 CATTTCGCCGAACAGCCC 59.515 61.111 0.00 0.00 0.00 5.19
2205 2228 4.131649 TCGGTTCTCTTTGTCTGTTTCA 57.868 40.909 0.00 0.00 0.00 2.69
2214 2237 0.875059 GGCCACTTCGGTTCTCTTTG 59.125 55.000 0.00 0.00 36.97 2.77
2215 2238 0.602905 CGGCCACTTCGGTTCTCTTT 60.603 55.000 2.24 0.00 36.97 2.52
2219 2242 2.030562 CACGGCCACTTCGGTTCT 59.969 61.111 2.24 0.00 36.97 3.01
2311 2334 2.040544 CAACCCGTGATCCCTGCAC 61.041 63.158 0.00 0.00 0.00 4.57
2340 2363 2.618312 GAATGTCGGGCTGCAATGGC 62.618 60.000 0.50 0.00 41.68 4.40
2385 2408 2.587194 GCGAGCTGATCACCGCAT 60.587 61.111 20.65 3.91 46.04 4.73
2424 2447 5.633830 TGCTGTTTTCATCTTCTTCATCC 57.366 39.130 0.00 0.00 0.00 3.51
2425 2448 5.572126 GCTTGCTGTTTTCATCTTCTTCATC 59.428 40.000 0.00 0.00 0.00 2.92
2426 2449 5.010314 TGCTTGCTGTTTTCATCTTCTTCAT 59.990 36.000 0.00 0.00 0.00 2.57
2427 2450 4.338964 TGCTTGCTGTTTTCATCTTCTTCA 59.661 37.500 0.00 0.00 0.00 3.02
2504 2530 4.223477 AGCTAAACCATGGCAAATCACATT 59.777 37.500 13.04 0.00 0.00 2.71
2510 2536 2.234414 CCACAGCTAAACCATGGCAAAT 59.766 45.455 13.04 0.00 0.00 2.32
2607 2636 2.295904 GAGCTTTCCTCCCTGCTCT 58.704 57.895 6.58 0.00 45.78 4.09
2625 2654 5.656416 TGGCCTTAGGATGGTATTTTTCTTG 59.344 40.000 3.32 0.00 0.00 3.02
2631 2660 5.388654 CTGAATGGCCTTAGGATGGTATTT 58.611 41.667 3.32 0.00 0.00 1.40
2690 2719 5.068460 CCTTCACAAAAACAGGTAATGTGGA 59.932 40.000 4.58 0.00 43.00 4.02
2695 2724 8.482128 TGAAAATCCTTCACAAAAACAGGTAAT 58.518 29.630 0.00 0.00 0.00 1.89
2698 2728 6.293004 TGAAAATCCTTCACAAAAACAGGT 57.707 33.333 0.00 0.00 0.00 4.00
2700 2730 8.422973 TGAATGAAAATCCTTCACAAAAACAG 57.577 30.769 0.00 0.00 28.41 3.16
2722 2752 1.143684 AGAGGCCTTTCAGCAACTGAA 59.856 47.619 6.77 5.94 46.93 3.02
2741 2772 4.937620 TCCTAAATGCAGCACAAAGAGTAG 59.062 41.667 0.00 0.00 0.00 2.57
2823 2854 0.395311 CCCTTCAGTGCTGGCATGAT 60.395 55.000 0.00 0.00 0.00 2.45
2824 2855 1.001764 CCCTTCAGTGCTGGCATGA 60.002 57.895 0.00 1.67 0.00 3.07
2842 2873 3.270877 ACCATCACTCGCCTATTTTCAC 58.729 45.455 0.00 0.00 0.00 3.18
2929 2965 6.975197 CACATCACAGTAGTACATAGGAACAG 59.025 42.308 2.52 0.00 0.00 3.16
2934 2970 5.923114 GCATCACATCACAGTAGTACATAGG 59.077 44.000 2.52 0.00 0.00 2.57
3014 3050 1.260544 GGGAAATGCTCACCTGCTTT 58.739 50.000 0.00 0.00 32.78 3.51
3040 3076 9.787532 CTAAATTGTACCACCACTAAATTGATG 57.212 33.333 0.00 0.00 0.00 3.07
3072 3108 4.074259 ACAGACAAGCAATTCAGCATGTA 58.926 39.130 0.00 0.00 45.29 2.29
3162 3202 1.448985 GCCGGATGCTACTCAAAACA 58.551 50.000 5.05 0.00 36.87 2.83
3349 3395 7.628234 ACACAGGGATATGAAAGGATATCATC 58.372 38.462 4.83 0.54 37.14 2.92
3358 3404 4.637534 CCACTGAACACAGGGATATGAAAG 59.362 45.833 0.00 0.00 37.24 2.62
3365 3437 2.174639 TGAAACCACTGAACACAGGGAT 59.825 45.455 0.00 0.00 37.24 3.85
3399 3471 3.491342 GCCTTCCTCTTTTCTCCAGTTT 58.509 45.455 0.00 0.00 0.00 2.66
3425 3497 2.905415 TGGAGCCTGGATGTTTTCAT 57.095 45.000 0.00 0.00 43.99 2.57
3511 3583 5.139727 ACACATTCAGTCTTTTGGATGGAA 58.860 37.500 0.00 0.00 38.21 3.53
3529 3601 3.318275 AGTTCGACGCCATAGATACACAT 59.682 43.478 0.00 0.00 0.00 3.21
3571 3643 5.897824 CCCCTCCTTAGTGTACAATTCTAGA 59.102 44.000 0.00 0.00 0.00 2.43
3578 3650 2.640826 CAACCCCCTCCTTAGTGTACAA 59.359 50.000 0.00 0.00 0.00 2.41
3619 3697 2.492088 GGGAAACTTGACATAACCCTGC 59.508 50.000 0.00 0.00 33.79 4.85
3627 3705 5.395214 GGACAAAAACAGGGAAACTTGACAT 60.395 40.000 0.00 0.00 40.48 3.06
3714 3792 1.977854 TCTTCTGGGCTTTCAGCTACA 59.022 47.619 0.00 0.00 41.99 2.74
3771 3849 1.699634 TGCAGCTCCCAGTTTACTTCT 59.300 47.619 0.00 0.00 0.00 2.85
3775 3853 0.678048 CCCTGCAGCTCCCAGTTTAC 60.678 60.000 8.66 0.00 0.00 2.01
3777 3855 2.011617 AACCCTGCAGCTCCCAGTTT 62.012 55.000 8.66 1.35 0.00 2.66
3778 3856 2.417558 GAACCCTGCAGCTCCCAGTT 62.418 60.000 8.66 4.30 0.00 3.16
3779 3857 2.856000 AACCCTGCAGCTCCCAGT 60.856 61.111 8.66 0.00 0.00 4.00
3780 3858 2.045536 GAACCCTGCAGCTCCCAG 60.046 66.667 8.66 4.29 0.00 4.45
3782 3860 2.900671 GATGGAACCCTGCAGCTCCC 62.901 65.000 19.42 13.05 0.00 4.30
3783 3861 1.452833 GATGGAACCCTGCAGCTCC 60.453 63.158 8.66 13.88 0.00 4.70
3784 3862 1.452833 GGATGGAACCCTGCAGCTC 60.453 63.158 8.66 4.13 28.83 4.09
3785 3863 2.207501 CTGGATGGAACCCTGCAGCT 62.208 60.000 8.66 0.00 28.83 4.24
3786 3864 1.751927 CTGGATGGAACCCTGCAGC 60.752 63.158 8.66 0.00 0.00 5.25
3787 3865 0.038744 AACTGGATGGAACCCTGCAG 59.961 55.000 6.78 6.78 36.93 4.41
3789 3867 1.177401 GAAACTGGATGGAACCCTGC 58.823 55.000 0.00 0.00 0.00 4.85
3793 3916 2.876581 ACAAGGAAACTGGATGGAACC 58.123 47.619 0.00 0.00 42.68 3.62
3799 3924 5.070685 GGTACAGAAACAAGGAAACTGGAT 58.929 41.667 0.00 0.00 42.68 3.41
3868 3993 8.488764 GCTTAATTTGGAATAAGCGTCTAGTAG 58.511 37.037 2.20 0.00 43.04 2.57
3890 4027 7.040478 CCTCCGATCCAAATTAATTGATGCTTA 60.040 37.037 0.39 0.00 41.85 3.09
3891 4028 6.239120 CCTCCGATCCAAATTAATTGATGCTT 60.239 38.462 0.39 0.00 41.85 3.91
3893 4030 5.464168 CCTCCGATCCAAATTAATTGATGC 58.536 41.667 0.39 0.00 41.85 3.91
3894 4031 5.769662 TCCCTCCGATCCAAATTAATTGATG 59.230 40.000 0.39 0.00 41.85 3.07
3895 4032 5.952387 TCCCTCCGATCCAAATTAATTGAT 58.048 37.500 0.39 1.14 41.85 2.57
3896 4033 5.104109 ACTCCCTCCGATCCAAATTAATTGA 60.104 40.000 0.39 0.00 41.85 2.57
3897 4034 5.133221 ACTCCCTCCGATCCAAATTAATTG 58.867 41.667 0.39 0.00 38.84 2.32
3898 4035 5.388599 ACTCCCTCCGATCCAAATTAATT 57.611 39.130 0.00 0.00 0.00 1.40
3899 4036 5.368523 TGTACTCCCTCCGATCCAAATTAAT 59.631 40.000 0.00 0.00 0.00 1.40
3900 4037 4.717778 TGTACTCCCTCCGATCCAAATTAA 59.282 41.667 0.00 0.00 0.00 1.40
3902 4039 3.112263 TGTACTCCCTCCGATCCAAATT 58.888 45.455 0.00 0.00 0.00 1.82
3903 4040 2.759355 TGTACTCCCTCCGATCCAAAT 58.241 47.619 0.00 0.00 0.00 2.32
3904 4041 2.241281 TGTACTCCCTCCGATCCAAA 57.759 50.000 0.00 0.00 0.00 3.28
3905 4042 2.241281 TTGTACTCCCTCCGATCCAA 57.759 50.000 0.00 0.00 0.00 3.53
3906 4043 2.108168 CTTTGTACTCCCTCCGATCCA 58.892 52.381 0.00 0.00 0.00 3.41
3907 4044 2.108970 ACTTTGTACTCCCTCCGATCC 58.891 52.381 0.00 0.00 0.00 3.36
3908 4045 3.889520 AACTTTGTACTCCCTCCGATC 57.110 47.619 0.00 0.00 0.00 3.69
3909 4046 5.021458 TCTTAACTTTGTACTCCCTCCGAT 58.979 41.667 0.00 0.00 0.00 4.18
3911 4048 4.796038 TCTTAACTTTGTACTCCCTCCG 57.204 45.455 0.00 0.00 0.00 4.63
3912 4049 6.940867 ACAATTCTTAACTTTGTACTCCCTCC 59.059 38.462 0.00 0.00 32.09 4.30
3913 4050 7.444487 ACACAATTCTTAACTTTGTACTCCCTC 59.556 37.037 0.00 0.00 32.57 4.30
3914 4051 7.287810 ACACAATTCTTAACTTTGTACTCCCT 58.712 34.615 0.00 0.00 32.57 4.20
3915 4052 7.506328 ACACAATTCTTAACTTTGTACTCCC 57.494 36.000 0.00 0.00 32.57 4.30
3917 4054 8.837389 AGGAACACAATTCTTAACTTTGTACTC 58.163 33.333 0.00 0.00 32.57 2.59
3919 4056 9.447040 GAAGGAACACAATTCTTAACTTTGTAC 57.553 33.333 0.00 0.00 32.57 2.90
3944 4092 6.126940 TGGATTTCACAATTTCAAACCAAGGA 60.127 34.615 0.00 0.00 0.00 3.36
3945 4093 6.054295 TGGATTTCACAATTTCAAACCAAGG 58.946 36.000 0.00 0.00 0.00 3.61
3946 4094 7.551035 TTGGATTTCACAATTTCAAACCAAG 57.449 32.000 0.00 0.00 31.53 3.61
3947 4095 7.609532 AGTTTGGATTTCACAATTTCAAACCAA 59.390 29.630 16.00 0.00 41.60 3.67
3953 4101 6.127225 TGGACAGTTTGGATTTCACAATTTCA 60.127 34.615 0.00 0.00 0.00 2.69
4006 4162 4.953940 TTGAAGTTCAAATTGAAGGGGG 57.046 40.909 15.92 0.00 37.00 5.40
4023 4179 9.521841 TGTTTATATTCAGGTATGTGGTTTGAA 57.478 29.630 0.00 0.00 32.90 2.69
4025 4181 9.734620 CATGTTTATATTCAGGTATGTGGTTTG 57.265 33.333 0.00 0.00 0.00 2.93
4100 4258 5.649557 GCAACATTGTTCATATTGGTGCTA 58.350 37.500 5.74 0.00 46.61 3.49
4101 4259 4.497300 GCAACATTGTTCATATTGGTGCT 58.503 39.130 5.74 0.00 46.61 4.40
4107 4265 9.926158 TTGTAAATCAGCAACATTGTTCATATT 57.074 25.926 0.00 0.00 0.00 1.28
4119 4277 8.812329 TGTGTGTAAAATTTGTAAATCAGCAAC 58.188 29.630 0.00 0.00 0.00 4.17
4139 4297 6.037720 TCGTTTGATCAACTGTAATTGTGTGT 59.962 34.615 7.89 0.00 32.53 3.72
4145 4314 6.913170 AGCAATCGTTTGATCAACTGTAATT 58.087 32.000 7.89 1.76 34.60 1.40
4148 4317 5.580691 CCTAGCAATCGTTTGATCAACTGTA 59.419 40.000 7.89 0.00 34.60 2.74
4152 4321 4.437390 CCACCTAGCAATCGTTTGATCAAC 60.437 45.833 7.89 2.92 34.60 3.18
4162 4331 2.853159 TTGCACCACCTAGCAATCG 58.147 52.632 0.00 0.00 44.98 3.34
4172 4341 0.248825 TGCACAAATCGTTGCACCAC 60.249 50.000 0.00 0.00 38.39 4.16
4178 4347 1.081509 CCCGGTGCACAAATCGTTG 60.082 57.895 20.43 2.69 40.84 4.10
4182 4351 1.745232 TGATACCCGGTGCACAAATC 58.255 50.000 20.43 13.01 0.00 2.17
4184 4353 1.815613 CATTGATACCCGGTGCACAAA 59.184 47.619 20.43 0.00 0.00 2.83
4187 4356 1.101049 CCCATTGATACCCGGTGCAC 61.101 60.000 8.80 8.80 0.00 4.57
4188 4357 1.225983 CCCATTGATACCCGGTGCA 59.774 57.895 0.00 0.00 0.00 4.57
4189 4358 0.106918 TTCCCATTGATACCCGGTGC 60.107 55.000 0.00 0.00 0.00 5.01
4190 4359 2.021457 GTTTCCCATTGATACCCGGTG 58.979 52.381 0.00 0.00 0.00 4.94
4191 4360 1.636519 TGTTTCCCATTGATACCCGGT 59.363 47.619 0.00 0.00 0.00 5.28
4210 4379 7.219535 GCAGATTCTTTATTACAGCACACATTG 59.780 37.037 0.00 0.00 0.00 2.82
4213 4382 5.939883 AGCAGATTCTTTATTACAGCACACA 59.060 36.000 0.00 0.00 0.00 3.72
4298 4468 5.829924 AGGAAACAGAAATACCCAGCATATG 59.170 40.000 0.00 0.00 0.00 1.78
4357 4536 0.179207 GCGGATTTTTCGAACCGGTC 60.179 55.000 21.86 0.00 44.61 4.79
4399 4578 5.178623 CCGTGTATTCATGTTGTTGTGTACT 59.821 40.000 0.00 0.00 0.00 2.73
4427 4635 9.423061 AGATGTAATTTGGTAAAGTCAAAATGC 57.577 29.630 0.00 0.00 37.60 3.56
4488 4696 8.620116 AACAAAATTGTAAAGGCAAATAGCAT 57.380 26.923 0.00 0.00 42.82 3.79
4525 4733 7.170489 ACAATCGCAAGTATATTCAGATGACTG 59.830 37.037 0.00 0.00 41.32 3.51
4534 4742 9.929722 TTACAATTGACAATCGCAAGTATATTC 57.070 29.630 13.59 0.00 39.48 1.75
4581 4789 5.838529 TCATCTTTGTCTGAAAGTACGTGA 58.161 37.500 0.00 0.00 33.76 4.35
4622 4830 5.237344 ACTTGATTGTGTTAGCAGTTCTGAC 59.763 40.000 3.84 0.00 32.41 3.51
4628 4836 3.480470 AGCACTTGATTGTGTTAGCAGT 58.520 40.909 0.00 0.00 39.89 4.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.