Multiple sequence alignment - TraesCS4B01G069400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G069400 chr4B 100.000 3976 0 0 1 3976 62977582 62973607 0.000000e+00 7343.0
1 TraesCS4B01G069400 chr4B 89.453 256 21 4 2998 3248 396716019 396716273 6.410000e-83 318.0
2 TraesCS4B01G069400 chr4D 88.824 2237 131 49 847 3008 43325899 43323707 0.000000e+00 2636.0
3 TraesCS4B01G069400 chr4D 90.496 1957 125 27 1092 3005 43381628 43379690 0.000000e+00 2527.0
4 TraesCS4B01G069400 chr4D 82.599 1385 109 53 1632 2988 43457941 43459221 0.000000e+00 1101.0
5 TraesCS4B01G069400 chr4D 95.601 591 20 2 1046 1636 43451870 43452454 0.000000e+00 942.0
6 TraesCS4B01G069400 chr4D 92.808 584 38 2 22 605 386122954 386123533 0.000000e+00 843.0
7 TraesCS4B01G069400 chr4D 84.828 580 71 11 3412 3975 43379549 43378971 5.770000e-158 568.0
8 TraesCS4B01G069400 chr4D 86.826 501 58 6 3477 3974 43323278 43322783 1.610000e-153 553.0
9 TraesCS4B01G069400 chr4D 90.385 260 18 4 2995 3248 319269597 319269855 6.370000e-88 335.0
10 TraesCS4B01G069400 chr4D 88.208 212 16 4 850 1052 43381838 43381627 1.100000e-60 244.0
11 TraesCS4B01G069400 chr4D 88.770 187 18 1 2131 2317 43416451 43416268 4.000000e-55 226.0
12 TraesCS4B01G069400 chr4D 100.000 34 0 0 3412 3445 43323570 43323537 3.320000e-06 63.9
13 TraesCS4B01G069400 chr4D 90.000 50 4 1 3412 3460 43459339 43459388 3.320000e-06 63.9
14 TraesCS4B01G069400 chr4A 89.846 1881 98 29 1114 2936 556698534 556700379 0.000000e+00 2329.0
15 TraesCS4B01G069400 chr4A 89.855 1380 88 21 1077 2433 556694547 556693197 0.000000e+00 1725.0
16 TraesCS4B01G069400 chr4A 83.705 583 53 24 2429 3003 556688248 556687700 2.740000e-141 512.0
17 TraesCS4B01G069400 chr4A 89.140 221 23 1 627 847 600365444 600365663 1.410000e-69 274.0
18 TraesCS4B01G069400 chr4A 93.458 107 7 0 848 954 556694739 556694633 4.110000e-35 159.0
19 TraesCS4B01G069400 chr4A 91.964 112 8 1 844 954 556698292 556698403 5.320000e-34 156.0
20 TraesCS4B01G069400 chr4A 90.476 63 6 0 2036 2098 556699714 556699776 2.550000e-12 84.2
21 TraesCS4B01G069400 chr5D 94.406 572 32 0 34 605 267620251 267620822 0.000000e+00 880.0
22 TraesCS4B01G069400 chr5D 93.750 576 33 3 33 605 539996109 539996684 0.000000e+00 861.0
23 TraesCS4B01G069400 chr5D 93.576 576 31 3 34 608 529804433 529803863 0.000000e+00 854.0
24 TraesCS4B01G069400 chr5D 93.253 578 31 2 34 605 559113383 559113958 0.000000e+00 845.0
25 TraesCS4B01G069400 chr5D 91.781 219 16 2 627 845 551893617 551893401 1.800000e-78 303.0
26 TraesCS4B01G069400 chr5D 90.541 222 18 3 627 847 407317138 407317357 1.400000e-74 291.0
27 TraesCS4B01G069400 chr3B 93.913 575 35 0 34 608 204845814 204845240 0.000000e+00 869.0
28 TraesCS4B01G069400 chr3B 92.991 214 13 2 627 838 779532728 779532941 1.070000e-80 311.0
29 TraesCS4B01G069400 chr1D 93.728 574 35 1 32 605 470206816 470207388 0.000000e+00 859.0
30 TraesCS4B01G069400 chr1D 91.364 220 19 0 627 846 470209230 470209449 6.460000e-78 302.0
31 TraesCS4B01G069400 chr7D 93.565 575 34 1 34 605 78290550 78291124 0.000000e+00 854.0
32 TraesCS4B01G069400 chr6B 93.368 573 34 3 36 608 545609492 545608924 0.000000e+00 845.0
33 TraesCS4B01G069400 chrUn 89.669 242 20 5 3008 3246 135321603 135321364 1.800000e-78 303.0
34 TraesCS4B01G069400 chrUn 89.669 242 20 5 3008 3246 135354757 135354518 1.800000e-78 303.0
35 TraesCS4B01G069400 chrUn 89.669 242 20 5 3008 3246 239422209 239421970 1.800000e-78 303.0
36 TraesCS4B01G069400 chrUn 89.669 242 20 5 3008 3246 245489244 245489005 1.800000e-78 303.0
37 TraesCS4B01G069400 chrUn 90.254 236 18 5 3008 3240 367976714 367976947 1.800000e-78 303.0
38 TraesCS4B01G069400 chrUn 89.831 236 19 5 3008 3240 91000243 91000476 8.350000e-77 298.0
39 TraesCS4B01G069400 chr2D 88.710 248 20 6 3003 3244 181304099 181304344 3.000000e-76 296.0
40 TraesCS4B01G069400 chr2D 90.868 219 18 2 627 845 602422760 602422976 3.890000e-75 292.0
41 TraesCS4B01G069400 chr3D 91.549 213 18 0 631 843 500888356 500888568 1.080000e-75 294.0
42 TraesCS4B01G069400 chr7A 90.783 217 18 1 631 845 660142664 660142448 5.030000e-74 289.0
43 TraesCS4B01G069400 chr5A 88.889 225 22 3 627 851 700171565 700171344 1.410000e-69 274.0
44 TraesCS4B01G069400 chr2B 93.182 44 3 0 3412 3455 746495247 746495290 9.220000e-07 65.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G069400 chr4B 62973607 62977582 3975 True 7343.00 7343 100.000000 1 3976 1 chr4B.!!$R1 3975
1 TraesCS4B01G069400 chr4D 43378971 43381838 2867 True 1113.00 2527 87.844000 850 3975 3 chr4D.!!$R3 3125
2 TraesCS4B01G069400 chr4D 43322783 43325899 3116 True 1084.30 2636 91.883333 847 3974 3 chr4D.!!$R2 3127
3 TraesCS4B01G069400 chr4D 43451870 43452454 584 False 942.00 942 95.601000 1046 1636 1 chr4D.!!$F1 590
4 TraesCS4B01G069400 chr4D 386122954 386123533 579 False 843.00 843 92.808000 22 605 1 chr4D.!!$F3 583
5 TraesCS4B01G069400 chr4D 43457941 43459388 1447 False 582.45 1101 86.299500 1632 3460 2 chr4D.!!$F4 1828
6 TraesCS4B01G069400 chr4A 556693197 556694739 1542 True 942.00 1725 91.656500 848 2433 2 chr4A.!!$R2 1585
7 TraesCS4B01G069400 chr4A 556698292 556700379 2087 False 856.40 2329 90.762000 844 2936 3 chr4A.!!$F2 2092
8 TraesCS4B01G069400 chr4A 556687700 556688248 548 True 512.00 512 83.705000 2429 3003 1 chr4A.!!$R1 574
9 TraesCS4B01G069400 chr5D 267620251 267620822 571 False 880.00 880 94.406000 34 605 1 chr5D.!!$F1 571
10 TraesCS4B01G069400 chr5D 539996109 539996684 575 False 861.00 861 93.750000 33 605 1 chr5D.!!$F3 572
11 TraesCS4B01G069400 chr5D 529803863 529804433 570 True 854.00 854 93.576000 34 608 1 chr5D.!!$R1 574
12 TraesCS4B01G069400 chr5D 559113383 559113958 575 False 845.00 845 93.253000 34 605 1 chr5D.!!$F4 571
13 TraesCS4B01G069400 chr3B 204845240 204845814 574 True 869.00 869 93.913000 34 608 1 chr3B.!!$R1 574
14 TraesCS4B01G069400 chr1D 470206816 470209449 2633 False 580.50 859 92.546000 32 846 2 chr1D.!!$F1 814
15 TraesCS4B01G069400 chr7D 78290550 78291124 574 False 854.00 854 93.565000 34 605 1 chr7D.!!$F1 571
16 TraesCS4B01G069400 chr6B 545608924 545609492 568 True 845.00 845 93.368000 36 608 1 chr6B.!!$R1 572

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
715 728 0.040781 TTTTTACGCGTTGCTGGAGC 60.041 50.0 20.78 0.0 42.50 4.70 F
748 761 0.167908 CATTTTAGCGCGGCTGTTGA 59.832 50.0 8.83 0.0 40.10 3.18 F
750 763 0.237235 TTTTAGCGCGGCTGTTGAAG 59.763 50.0 8.83 0.0 40.10 3.02 F
2357 2677 0.389817 CTTGACGGGAGCAACGATGA 60.390 55.0 0.00 0.0 34.93 2.92 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2576 3544 1.893808 CGGCCACTCAACAACAGCT 60.894 57.895 2.24 0.0 0.0 4.24 R
2713 3681 4.074627 TCACTACGGTTTTTGACATGGA 57.925 40.909 0.00 0.0 0.0 3.41 R
2714 3682 4.822036 TTCACTACGGTTTTTGACATGG 57.178 40.909 0.00 0.0 0.0 3.66 R
3918 5181 0.178900 AACGAAGGAGAGGAAGGGGT 60.179 55.000 0.00 0.0 0.0 4.95 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 4.034246 GGGTCAAAATGGCCTCCC 57.966 61.111 3.32 0.77 43.05 4.30
18 19 2.052104 GGGTCAAAATGGCCTCCCG 61.052 63.158 3.32 0.00 43.05 5.14
19 20 1.304134 GGTCAAAATGGCCTCCCGT 60.304 57.895 3.32 0.00 39.55 5.28
20 21 0.898326 GGTCAAAATGGCCTCCCGTT 60.898 55.000 3.32 0.00 39.55 4.44
21 22 1.614850 GGTCAAAATGGCCTCCCGTTA 60.615 52.381 3.32 0.00 39.55 3.18
22 23 1.743394 GTCAAAATGGCCTCCCGTTAG 59.257 52.381 3.32 0.00 39.44 2.34
23 24 1.102978 CAAAATGGCCTCCCGTTAGG 58.897 55.000 3.32 0.00 39.44 2.69
24 25 0.996583 AAAATGGCCTCCCGTTAGGA 59.003 50.000 3.32 0.00 44.91 2.94
25 26 1.222567 AAATGGCCTCCCGTTAGGAT 58.777 50.000 3.32 0.00 46.33 3.24
26 27 2.112279 AATGGCCTCCCGTTAGGATA 57.888 50.000 3.32 0.00 46.33 2.59
27 28 1.645710 ATGGCCTCCCGTTAGGATAG 58.354 55.000 3.32 0.00 46.33 2.08
28 29 0.559205 TGGCCTCCCGTTAGGATAGA 59.441 55.000 3.32 0.00 46.33 1.98
29 30 1.062734 TGGCCTCCCGTTAGGATAGAA 60.063 52.381 3.32 0.00 46.33 2.10
30 31 1.343789 GGCCTCCCGTTAGGATAGAAC 59.656 57.143 0.00 0.00 46.33 3.01
185 186 2.004583 CGGTCGGTTTTGCTATCTCA 57.995 50.000 0.00 0.00 0.00 3.27
189 190 1.075542 CGGTTTTGCTATCTCACGCA 58.924 50.000 0.00 0.00 0.00 5.24
258 261 1.450491 CGCACTCTCTCCTCTCCGA 60.450 63.158 0.00 0.00 0.00 4.55
265 268 2.436542 CTCTCTCCTCTCCGACTCCTAA 59.563 54.545 0.00 0.00 0.00 2.69
271 274 1.381327 CTCCGACTCCTAAGCCCCA 60.381 63.158 0.00 0.00 0.00 4.96
472 485 4.530857 GCCACGGATGACCTCGGG 62.531 72.222 0.00 0.00 0.00 5.14
605 618 4.388499 GGCTCCGGCACCTCGAAA 62.388 66.667 0.00 0.00 40.87 3.46
608 621 4.388499 TCCGGCACCTCGAAAGCC 62.388 66.667 11.31 11.31 44.89 4.35
630 643 4.096003 CGGACGGCTCCCCAATGT 62.096 66.667 0.00 0.00 31.93 2.71
631 644 2.355115 GGACGGCTCCCCAATGTT 59.645 61.111 0.00 0.00 0.00 2.71
632 645 1.304134 GGACGGCTCCCCAATGTTT 60.304 57.895 0.00 0.00 0.00 2.83
633 646 1.313091 GGACGGCTCCCCAATGTTTC 61.313 60.000 0.00 0.00 0.00 2.78
634 647 0.608035 GACGGCTCCCCAATGTTTCA 60.608 55.000 0.00 0.00 0.00 2.69
635 648 0.178975 ACGGCTCCCCAATGTTTCAA 60.179 50.000 0.00 0.00 0.00 2.69
636 649 0.965439 CGGCTCCCCAATGTTTCAAA 59.035 50.000 0.00 0.00 0.00 2.69
637 650 1.550072 CGGCTCCCCAATGTTTCAAAT 59.450 47.619 0.00 0.00 0.00 2.32
638 651 2.028203 CGGCTCCCCAATGTTTCAAATT 60.028 45.455 0.00 0.00 0.00 1.82
639 652 3.599343 GGCTCCCCAATGTTTCAAATTC 58.401 45.455 0.00 0.00 0.00 2.17
640 653 3.007831 GGCTCCCCAATGTTTCAAATTCA 59.992 43.478 0.00 0.00 0.00 2.57
641 654 4.323715 GGCTCCCCAATGTTTCAAATTCAT 60.324 41.667 0.00 0.00 0.00 2.57
642 655 5.247862 GCTCCCCAATGTTTCAAATTCATT 58.752 37.500 0.00 0.00 32.93 2.57
643 656 5.706833 GCTCCCCAATGTTTCAAATTCATTT 59.293 36.000 0.00 0.00 30.74 2.32
644 657 6.207221 GCTCCCCAATGTTTCAAATTCATTTT 59.793 34.615 0.00 0.00 30.74 1.82
645 658 7.507733 TCCCCAATGTTTCAAATTCATTTTG 57.492 32.000 0.00 0.00 45.08 2.44
646 659 7.059156 TCCCCAATGTTTCAAATTCATTTTGT 58.941 30.769 0.00 0.00 44.25 2.83
647 660 7.013083 TCCCCAATGTTTCAAATTCATTTTGTG 59.987 33.333 0.00 0.00 44.25 3.33
648 661 7.201803 CCCCAATGTTTCAAATTCATTTTGTGT 60.202 33.333 0.00 0.00 44.25 3.72
649 662 7.856894 CCCAATGTTTCAAATTCATTTTGTGTC 59.143 33.333 0.00 0.00 44.25 3.67
650 663 7.856894 CCAATGTTTCAAATTCATTTTGTGTCC 59.143 33.333 0.00 0.00 44.25 4.02
651 664 8.396390 CAATGTTTCAAATTCATTTTGTGTCCA 58.604 29.630 0.00 0.00 44.25 4.02
652 665 7.912056 TGTTTCAAATTCATTTTGTGTCCAA 57.088 28.000 0.00 0.00 44.25 3.53
653 666 8.327941 TGTTTCAAATTCATTTTGTGTCCAAA 57.672 26.923 0.00 0.00 44.25 3.28
666 679 8.700722 TTTTGTGTCCAAAATGTCATATATGC 57.299 30.769 7.92 4.27 43.72 3.14
667 680 7.401955 TTGTGTCCAAAATGTCATATATGCA 57.598 32.000 7.92 9.62 0.00 3.96
668 681 7.401955 TGTGTCCAAAATGTCATATATGCAA 57.598 32.000 7.92 0.00 0.00 4.08
669 682 8.009622 TGTGTCCAAAATGTCATATATGCAAT 57.990 30.769 7.92 1.41 0.00 3.56
670 683 7.921745 TGTGTCCAAAATGTCATATATGCAATG 59.078 33.333 7.92 9.63 0.00 2.82
671 684 6.924612 TGTCCAAAATGTCATATATGCAATGC 59.075 34.615 7.92 0.00 0.00 3.56
672 685 6.366877 GTCCAAAATGTCATATATGCAATGCC 59.633 38.462 7.92 0.00 0.00 4.40
673 686 5.640357 CCAAAATGTCATATATGCAATGCCC 59.360 40.000 7.92 0.00 0.00 5.36
674 687 5.410355 AAATGTCATATATGCAATGCCCC 57.590 39.130 7.92 0.00 0.00 5.80
675 688 2.435422 TGTCATATATGCAATGCCCCG 58.565 47.619 7.92 0.00 0.00 5.73
676 689 1.745087 GTCATATATGCAATGCCCCGG 59.255 52.381 7.92 0.00 0.00 5.73
677 690 0.457035 CATATATGCAATGCCCCGGC 59.543 55.000 1.53 0.00 42.35 6.13
678 691 1.031571 ATATATGCAATGCCCCGGCG 61.032 55.000 1.53 0.00 45.51 6.46
679 692 2.118233 TATATGCAATGCCCCGGCGA 62.118 55.000 9.30 0.00 45.51 5.54
680 693 3.976497 TATATGCAATGCCCCGGCGAG 62.976 57.143 9.30 0.00 45.51 5.03
715 728 0.040781 TTTTTACGCGTTGCTGGAGC 60.041 50.000 20.78 0.00 42.50 4.70
743 756 3.876198 CGGCATTTTAGCGCGGCT 61.876 61.111 8.83 8.38 43.41 5.52
744 757 2.278142 GGCATTTTAGCGCGGCTG 60.278 61.111 8.83 0.00 40.10 4.85
745 758 2.485122 GCATTTTAGCGCGGCTGT 59.515 55.556 8.83 0.00 40.10 4.40
746 759 1.154035 GCATTTTAGCGCGGCTGTT 60.154 52.632 8.83 0.00 40.10 3.16
747 760 1.405469 GCATTTTAGCGCGGCTGTTG 61.405 55.000 8.83 0.00 40.10 3.33
748 761 0.167908 CATTTTAGCGCGGCTGTTGA 59.832 50.000 8.83 0.00 40.10 3.18
749 762 0.878416 ATTTTAGCGCGGCTGTTGAA 59.122 45.000 8.83 0.97 40.10 2.69
750 763 0.237235 TTTTAGCGCGGCTGTTGAAG 59.763 50.000 8.83 0.00 40.10 3.02
773 786 3.959975 GCTGACGGCCGTGCAAAA 61.960 61.111 39.65 14.59 34.27 2.44
774 787 2.051345 CTGACGGCCGTGCAAAAC 60.051 61.111 39.65 21.04 0.00 2.43
775 788 3.536498 CTGACGGCCGTGCAAAACC 62.536 63.158 39.65 20.21 0.00 3.27
776 789 3.587933 GACGGCCGTGCAAAACCA 61.588 61.111 39.65 0.00 0.00 3.67
777 790 3.536498 GACGGCCGTGCAAAACCAG 62.536 63.158 39.65 0.00 0.00 4.00
778 791 4.999939 CGGCCGTGCAAAACCAGC 63.000 66.667 19.50 0.00 0.00 4.85
779 792 4.662961 GGCCGTGCAAAACCAGCC 62.663 66.667 0.00 0.00 37.51 4.85
780 793 4.999939 GCCGTGCAAAACCAGCCG 63.000 66.667 0.00 0.00 0.00 5.52
781 794 3.283684 CCGTGCAAAACCAGCCGA 61.284 61.111 0.00 0.00 0.00 5.54
782 795 2.718731 CGTGCAAAACCAGCCGAA 59.281 55.556 0.00 0.00 0.00 4.30
783 796 1.657181 CGTGCAAAACCAGCCGAAC 60.657 57.895 0.00 0.00 0.00 3.95
784 797 1.657181 GTGCAAAACCAGCCGAACG 60.657 57.895 0.00 0.00 0.00 3.95
785 798 2.050442 GCAAAACCAGCCGAACGG 60.050 61.111 9.00 9.00 38.57 4.44
802 815 4.084888 GCGCGCGGCAAACTAGTT 62.085 61.111 33.06 1.12 42.87 2.24
803 816 2.554272 CGCGCGGCAAACTAGTTT 59.446 55.556 24.84 15.22 0.00 2.66
804 817 1.082366 CGCGCGGCAAACTAGTTTT 60.082 52.632 24.84 1.50 0.00 2.43
805 818 0.659123 CGCGCGGCAAACTAGTTTTT 60.659 50.000 24.84 0.00 0.00 1.94
833 846 4.430423 GCAAAGCGCGACTGTCGG 62.430 66.667 28.92 20.01 40.84 4.79
834 847 2.733218 CAAAGCGCGACTGTCGGA 60.733 61.111 28.92 0.00 40.84 4.55
835 848 2.430921 AAAGCGCGACTGTCGGAG 60.431 61.111 28.92 14.02 40.84 4.63
836 849 2.916052 AAAGCGCGACTGTCGGAGA 61.916 57.895 28.92 0.00 40.84 3.71
837 850 2.214181 AAAGCGCGACTGTCGGAGAT 62.214 55.000 28.92 9.84 40.84 2.75
838 851 2.874010 AAGCGCGACTGTCGGAGATG 62.874 60.000 28.92 3.17 40.84 2.90
839 852 2.951745 CGCGACTGTCGGAGATGC 60.952 66.667 28.92 11.96 40.84 3.91
840 853 2.492090 GCGACTGTCGGAGATGCT 59.508 61.111 28.92 0.00 40.84 3.79
841 854 1.587613 GCGACTGTCGGAGATGCTC 60.588 63.158 28.92 8.22 40.84 4.26
842 855 1.999071 GCGACTGTCGGAGATGCTCT 61.999 60.000 28.92 0.00 40.84 4.09
845 858 2.286713 CGACTGTCGGAGATGCTCTTAG 60.287 54.545 21.78 0.00 40.67 2.18
853 866 1.066587 GATGCTCTTAGGCGCGTCT 59.933 57.895 20.79 20.79 38.72 4.18
862 875 2.838386 TAGGCGCGTCTTGTAACTAG 57.162 50.000 22.56 0.00 0.00 2.57
866 880 1.531912 CGCGTCTTGTAACTAGTCCG 58.468 55.000 0.00 0.00 0.00 4.79
927 945 3.722147 GAATCACATGCTAGTCCGACAT 58.278 45.455 0.40 0.00 0.00 3.06
928 946 3.827008 ATCACATGCTAGTCCGACATT 57.173 42.857 0.40 0.00 0.00 2.71
977 998 6.917477 CACCACATTTGCATATATAAAAGCGT 59.083 34.615 0.00 0.00 0.00 5.07
1279 1350 1.038130 GCCGGAGAAGCTAGTGGAGA 61.038 60.000 5.05 0.00 0.00 3.71
1930 2173 1.738350 CTTCAGCTTCCTCGTCGTCTA 59.262 52.381 0.00 0.00 0.00 2.59
2133 2447 0.962356 ATGGCTTCCAAGAACCTGCG 60.962 55.000 0.00 0.00 36.95 5.18
2172 2486 4.200283 GAGGTCCTCTCTGCGGCG 62.200 72.222 12.02 0.51 39.38 6.46
2357 2677 0.389817 CTTGACGGGAGCAACGATGA 60.390 55.000 0.00 0.00 34.93 2.92
2421 3379 1.430228 GAACGAGCTCCTCTCCGTC 59.570 63.158 8.47 0.00 38.62 4.79
2560 3528 0.412640 ACCTACGTTCCTCCTCCCTT 59.587 55.000 0.00 0.00 0.00 3.95
2576 3544 3.357919 TTCCGCGACGAGGAAGAA 58.642 55.556 26.42 7.66 42.33 2.52
2693 3661 3.775202 AGTCTGCTACACGAACATCATC 58.225 45.455 0.00 0.00 0.00 2.92
2694 3662 3.193479 AGTCTGCTACACGAACATCATCA 59.807 43.478 0.00 0.00 0.00 3.07
2699 3667 3.121328 GCTACACGAACATCATCATACGC 60.121 47.826 0.00 0.00 0.00 4.42
2709 3677 6.657836 ACATCATCATACGCATCATGTATG 57.342 37.500 6.76 6.76 46.72 2.39
2710 3678 6.168389 ACATCATCATACGCATCATGTATGT 58.832 36.000 11.57 0.00 45.91 2.29
2713 3681 8.823818 CATCATCATACGCATCATGTATGTATT 58.176 33.333 11.57 0.00 45.91 1.89
2714 3682 8.411318 TCATCATACGCATCATGTATGTATTC 57.589 34.615 11.57 0.00 45.91 1.75
2791 3769 4.649267 TTGGAACCAATGTATGTCTCCA 57.351 40.909 1.83 0.00 36.56 3.86
2795 3773 6.910191 TGGAACCAATGTATGTCTCCATATT 58.090 36.000 0.00 0.00 36.02 1.28
2831 3838 3.393089 ACAGAGGGCGATCATATTCAC 57.607 47.619 0.00 0.00 0.00 3.18
2846 3853 8.618702 ATCATATTCACTTTAGCAATCCTCAG 57.381 34.615 0.00 0.00 0.00 3.35
2854 3861 2.206576 AGCAATCCTCAGTTTGGTCC 57.793 50.000 0.00 0.00 29.56 4.46
2867 3874 3.000727 GTTTGGTCCATCTCCTTGTACG 58.999 50.000 0.00 0.00 0.00 3.67
2881 3888 1.448013 GTACGCCTCCTTGCCTGTC 60.448 63.158 0.00 0.00 0.00 3.51
2883 3890 2.167398 TACGCCTCCTTGCCTGTCAC 62.167 60.000 0.00 0.00 0.00 3.67
2889 3896 2.328099 CCTTGCCTGTCACGCTTCC 61.328 63.158 0.00 0.00 0.00 3.46
2927 3943 7.194607 TCTGATTCAACTTGACAGATGAAAC 57.805 36.000 7.64 0.00 43.04 2.78
2939 3955 9.429359 CTTGACAGATGAAACCCATATATAGTC 57.571 37.037 0.00 0.00 35.17 2.59
3009 4027 4.944048 AGTGCATGTAAAACTTTTGGACC 58.056 39.130 0.00 0.00 30.00 4.46
3010 4028 4.055360 GTGCATGTAAAACTTTTGGACCC 58.945 43.478 0.00 0.00 0.00 4.46
3011 4029 3.964031 TGCATGTAAAACTTTTGGACCCT 59.036 39.130 0.00 0.00 0.00 4.34
3012 4030 4.202202 TGCATGTAAAACTTTTGGACCCTG 60.202 41.667 0.00 0.00 0.00 4.45
3013 4031 4.038642 GCATGTAAAACTTTTGGACCCTGA 59.961 41.667 0.00 0.00 0.00 3.86
3015 4033 6.071616 GCATGTAAAACTTTTGGACCCTGATA 60.072 38.462 0.00 0.00 0.00 2.15
3016 4034 7.524698 GCATGTAAAACTTTTGGACCCTGATAA 60.525 37.037 0.00 0.00 0.00 1.75
3018 4036 7.064229 TGTAAAACTTTTGGACCCTGATAAGT 58.936 34.615 0.00 0.00 0.00 2.24
3023 4041 0.618458 TGGACCCTGATAAGTGCCAC 59.382 55.000 0.00 0.00 0.00 5.01
3024 4042 0.618458 GGACCCTGATAAGTGCCACA 59.382 55.000 0.00 0.00 0.00 4.17
3025 4043 1.679032 GGACCCTGATAAGTGCCACAC 60.679 57.143 0.00 0.00 34.10 3.82
3026 4044 0.036388 ACCCTGATAAGTGCCACACG 60.036 55.000 0.00 0.00 39.64 4.49
3029 4047 1.608025 CCTGATAAGTGCCACACGTGT 60.608 52.381 17.22 17.22 39.64 4.49
3030 4048 1.460743 CTGATAAGTGCCACACGTGTG 59.539 52.381 36.13 36.13 45.23 3.82
3031 4049 0.165944 GATAAGTGCCACACGTGTGC 59.834 55.000 37.33 31.00 44.34 4.57
3032 4050 1.234615 ATAAGTGCCACACGTGTGCC 61.235 55.000 37.33 30.08 44.34 5.01
3033 4051 2.595009 TAAGTGCCACACGTGTGCCA 62.595 55.000 37.33 32.29 44.34 4.92
3044 4062 3.743208 TGTGCCACGAACACATGG 58.257 55.556 0.00 0.00 42.88 3.66
3049 4067 2.330254 CCACGAACACATGGCAACT 58.670 52.632 0.00 0.00 37.61 3.16
3050 4068 0.238289 CCACGAACACATGGCAACTC 59.762 55.000 0.00 0.00 37.61 3.01
3051 4069 0.238289 CACGAACACATGGCAACTCC 59.762 55.000 0.00 0.00 37.61 3.85
3052 4070 1.227999 ACGAACACATGGCAACTCCG 61.228 55.000 0.00 0.00 37.80 4.63
3053 4071 0.948623 CGAACACATGGCAACTCCGA 60.949 55.000 0.00 0.00 37.80 4.55
3054 4072 1.234821 GAACACATGGCAACTCCGAA 58.765 50.000 0.00 0.00 37.80 4.30
3055 4073 0.951558 AACACATGGCAACTCCGAAC 59.048 50.000 0.00 0.00 37.80 3.95
3056 4074 0.179032 ACACATGGCAACTCCGAACA 60.179 50.000 0.00 0.00 37.80 3.18
3057 4075 1.167851 CACATGGCAACTCCGAACAT 58.832 50.000 0.00 0.00 37.80 2.71
3058 4076 1.541147 CACATGGCAACTCCGAACATT 59.459 47.619 0.00 0.00 37.80 2.71
3059 4077 2.030007 CACATGGCAACTCCGAACATTT 60.030 45.455 0.00 0.00 37.80 2.32
3060 4078 2.627699 ACATGGCAACTCCGAACATTTT 59.372 40.909 0.00 0.00 37.80 1.82
3061 4079 3.069443 ACATGGCAACTCCGAACATTTTT 59.931 39.130 0.00 0.00 37.80 1.94
3081 4099 6.698359 TTTTTATGGCAAGTTTAATGACGC 57.302 33.333 0.00 0.00 0.00 5.19
3082 4100 5.378292 TTTATGGCAAGTTTAATGACGCA 57.622 34.783 0.00 0.00 0.00 5.24
3083 4101 3.932545 ATGGCAAGTTTAATGACGCAA 57.067 38.095 0.00 0.00 0.00 4.85
3085 4103 2.030363 TGGCAAGTTTAATGACGCAAGG 60.030 45.455 0.00 0.00 46.39 3.61
3086 4104 2.227865 GGCAAGTTTAATGACGCAAGGA 59.772 45.455 0.00 0.00 46.39 3.36
3087 4105 3.119495 GGCAAGTTTAATGACGCAAGGAT 60.119 43.478 0.00 0.00 46.39 3.24
3088 4106 3.853671 GCAAGTTTAATGACGCAAGGATG 59.146 43.478 0.00 0.00 46.39 3.51
3089 4107 4.379394 GCAAGTTTAATGACGCAAGGATGA 60.379 41.667 0.00 0.00 46.39 2.92
3090 4108 4.946784 AGTTTAATGACGCAAGGATGAC 57.053 40.909 0.00 0.00 46.39 3.06
3091 4109 4.323417 AGTTTAATGACGCAAGGATGACA 58.677 39.130 0.00 0.00 46.39 3.58
3092 4110 4.759693 AGTTTAATGACGCAAGGATGACAA 59.240 37.500 0.00 0.00 46.39 3.18
3093 4111 4.678509 TTAATGACGCAAGGATGACAAC 57.321 40.909 0.00 0.00 46.39 3.32
3094 4112 2.479566 ATGACGCAAGGATGACAACT 57.520 45.000 0.00 0.00 46.39 3.16
3095 4113 2.254546 TGACGCAAGGATGACAACTT 57.745 45.000 0.00 0.00 46.39 2.66
3096 4114 2.571212 TGACGCAAGGATGACAACTTT 58.429 42.857 0.00 0.00 46.39 2.66
3097 4115 3.734463 TGACGCAAGGATGACAACTTTA 58.266 40.909 0.00 0.00 46.39 1.85
3098 4116 3.745975 TGACGCAAGGATGACAACTTTAG 59.254 43.478 0.00 0.00 46.39 1.85
3099 4117 3.740115 ACGCAAGGATGACAACTTTAGT 58.260 40.909 0.00 0.00 46.39 2.24
3100 4118 4.134563 ACGCAAGGATGACAACTTTAGTT 58.865 39.130 0.00 0.00 46.39 2.24
3112 4130 3.923017 ACTTTAGTTGTCAAGCATGGC 57.077 42.857 0.00 0.00 0.00 4.40
3113 4131 3.221771 ACTTTAGTTGTCAAGCATGGCA 58.778 40.909 0.00 0.00 40.01 4.92
3118 4136 2.798976 TTGTCAAGCATGGCAACTTC 57.201 45.000 4.59 0.00 45.79 3.01
3119 4137 1.985473 TGTCAAGCATGGCAACTTCT 58.015 45.000 0.00 0.00 38.47 2.85
3120 4138 2.309613 TGTCAAGCATGGCAACTTCTT 58.690 42.857 0.00 0.00 38.47 2.52
3121 4139 2.694628 TGTCAAGCATGGCAACTTCTTT 59.305 40.909 0.00 0.00 38.47 2.52
3122 4140 3.132646 TGTCAAGCATGGCAACTTCTTTT 59.867 39.130 0.00 0.00 38.47 2.27
3123 4141 3.737774 GTCAAGCATGGCAACTTCTTTTC 59.262 43.478 3.39 0.00 37.61 2.29
3124 4142 2.712057 AGCATGGCAACTTCTTTTCG 57.288 45.000 0.00 0.00 37.61 3.46
3125 4143 1.270550 AGCATGGCAACTTCTTTTCGG 59.729 47.619 0.00 0.00 37.61 4.30
3126 4144 1.269448 GCATGGCAACTTCTTTTCGGA 59.731 47.619 0.00 0.00 37.61 4.55
3127 4145 2.288152 GCATGGCAACTTCTTTTCGGAA 60.288 45.455 0.00 0.00 37.61 4.30
3128 4146 3.568538 CATGGCAACTTCTTTTCGGAAG 58.431 45.455 0.00 0.00 45.68 3.46
3129 4147 1.953686 TGGCAACTTCTTTTCGGAAGG 59.046 47.619 8.71 0.00 44.82 3.46
3130 4148 1.335964 GGCAACTTCTTTTCGGAAGGC 60.336 52.381 8.71 3.86 44.82 4.35
3131 4149 1.336755 GCAACTTCTTTTCGGAAGGCA 59.663 47.619 8.71 0.00 44.82 4.75
3132 4150 2.223711 GCAACTTCTTTTCGGAAGGCAA 60.224 45.455 8.71 0.00 44.82 4.52
3133 4151 3.632189 CAACTTCTTTTCGGAAGGCAAG 58.368 45.455 8.71 1.53 44.82 4.01
3134 4152 2.932261 ACTTCTTTTCGGAAGGCAAGT 58.068 42.857 8.71 2.05 44.82 3.16
3135 4153 3.288092 ACTTCTTTTCGGAAGGCAAGTT 58.712 40.909 8.71 0.00 44.82 2.66
3136 4154 3.699538 ACTTCTTTTCGGAAGGCAAGTTT 59.300 39.130 8.71 0.00 44.82 2.66
3137 4155 3.982576 TCTTTTCGGAAGGCAAGTTTC 57.017 42.857 1.76 0.00 0.00 2.78
3138 4156 3.283751 TCTTTTCGGAAGGCAAGTTTCA 58.716 40.909 1.76 0.00 0.00 2.69
3139 4157 3.315191 TCTTTTCGGAAGGCAAGTTTCAG 59.685 43.478 1.76 0.00 0.00 3.02
3140 4158 2.341846 TTCGGAAGGCAAGTTTCAGT 57.658 45.000 0.00 0.00 0.00 3.41
3141 4159 2.341846 TCGGAAGGCAAGTTTCAGTT 57.658 45.000 0.00 0.00 0.00 3.16
3142 4160 2.650322 TCGGAAGGCAAGTTTCAGTTT 58.350 42.857 0.00 0.00 0.00 2.66
3143 4161 3.020984 TCGGAAGGCAAGTTTCAGTTTT 58.979 40.909 0.00 0.00 0.00 2.43
3144 4162 3.445805 TCGGAAGGCAAGTTTCAGTTTTT 59.554 39.130 0.00 0.00 0.00 1.94
3174 4192 4.615588 TTTTTCCTTTTCGGATGGCAAT 57.384 36.364 0.00 0.00 42.70 3.56
3175 4193 4.615588 TTTTCCTTTTCGGATGGCAATT 57.384 36.364 0.00 0.00 42.70 2.32
3176 4194 4.615588 TTTCCTTTTCGGATGGCAATTT 57.384 36.364 0.00 0.00 42.70 1.82
3177 4195 4.615588 TTCCTTTTCGGATGGCAATTTT 57.384 36.364 0.00 0.00 42.70 1.82
3178 4196 5.730296 TTCCTTTTCGGATGGCAATTTTA 57.270 34.783 0.00 0.00 42.70 1.52
3179 4197 5.323371 TCCTTTTCGGATGGCAATTTTAG 57.677 39.130 0.00 0.00 36.69 1.85
3180 4198 3.865164 CCTTTTCGGATGGCAATTTTAGC 59.135 43.478 0.00 0.00 33.16 3.09
3181 4199 4.381932 CCTTTTCGGATGGCAATTTTAGCT 60.382 41.667 0.00 0.00 33.16 3.32
3182 4200 3.781079 TTCGGATGGCAATTTTAGCTG 57.219 42.857 0.00 0.00 0.00 4.24
3183 4201 2.722094 TCGGATGGCAATTTTAGCTGT 58.278 42.857 0.00 0.00 0.00 4.40
3184 4202 3.879998 TCGGATGGCAATTTTAGCTGTA 58.120 40.909 0.00 0.00 0.00 2.74
3185 4203 4.265893 TCGGATGGCAATTTTAGCTGTAA 58.734 39.130 0.00 0.00 0.00 2.41
3186 4204 4.702612 TCGGATGGCAATTTTAGCTGTAAA 59.297 37.500 0.00 0.00 0.00 2.01
3187 4205 5.184096 TCGGATGGCAATTTTAGCTGTAAAA 59.816 36.000 0.00 0.00 41.34 1.52
3188 4206 5.866633 CGGATGGCAATTTTAGCTGTAAAAA 59.133 36.000 0.00 0.00 40.65 1.94
3203 4221 3.021451 AAAAACGTCAGGGCTGGAG 57.979 52.632 0.00 0.00 0.00 3.86
3204 4222 0.182775 AAAAACGTCAGGGCTGGAGT 59.817 50.000 0.00 0.00 0.00 3.85
3205 4223 0.535102 AAAACGTCAGGGCTGGAGTG 60.535 55.000 0.00 0.00 0.00 3.51
3206 4224 3.537206 AACGTCAGGGCTGGAGTGC 62.537 63.158 0.00 0.00 0.00 4.40
3207 4225 3.699894 CGTCAGGGCTGGAGTGCT 61.700 66.667 0.00 0.00 0.00 4.40
3208 4226 2.753029 GTCAGGGCTGGAGTGCTT 59.247 61.111 0.00 0.00 0.00 3.91
3209 4227 1.376553 GTCAGGGCTGGAGTGCTTC 60.377 63.158 0.00 0.00 0.00 3.86
3210 4228 2.435586 CAGGGCTGGAGTGCTTCG 60.436 66.667 0.00 0.00 0.00 3.79
3211 4229 2.925170 AGGGCTGGAGTGCTTCGT 60.925 61.111 0.00 0.00 0.00 3.85
3212 4230 2.743928 GGGCTGGAGTGCTTCGTG 60.744 66.667 0.00 0.00 0.00 4.35
3213 4231 3.426568 GGCTGGAGTGCTTCGTGC 61.427 66.667 0.00 0.00 43.25 5.34
3214 4232 3.426568 GCTGGAGTGCTTCGTGCC 61.427 66.667 1.30 0.00 42.00 5.01
3215 4233 2.031012 CTGGAGTGCTTCGTGCCA 59.969 61.111 0.00 0.00 42.00 4.92
3216 4234 1.376424 CTGGAGTGCTTCGTGCCAT 60.376 57.895 0.00 0.00 42.00 4.40
3217 4235 0.108186 CTGGAGTGCTTCGTGCCATA 60.108 55.000 0.00 0.00 42.00 2.74
3218 4236 0.391130 TGGAGTGCTTCGTGCCATAC 60.391 55.000 0.00 0.00 42.00 2.39
3233 4251 2.899976 CCATACGTGTGGCACTTATCA 58.100 47.619 18.97 0.60 28.58 2.15
3234 4252 3.466836 CCATACGTGTGGCACTTATCAT 58.533 45.455 18.97 3.05 28.58 2.45
3235 4253 3.876914 CCATACGTGTGGCACTTATCATT 59.123 43.478 18.97 0.00 28.58 2.57
3236 4254 4.335315 CCATACGTGTGGCACTTATCATTT 59.665 41.667 18.97 0.00 28.58 2.32
3237 4255 3.829886 ACGTGTGGCACTTATCATTTG 57.170 42.857 19.83 0.77 31.34 2.32
3238 4256 2.487762 ACGTGTGGCACTTATCATTTGG 59.512 45.455 19.83 0.00 31.34 3.28
3239 4257 2.159393 CGTGTGGCACTTATCATTTGGG 60.159 50.000 19.83 0.00 31.34 4.12
3240 4258 2.825532 GTGTGGCACTTATCATTTGGGT 59.174 45.455 19.83 0.00 0.00 4.51
3241 4259 4.013728 GTGTGGCACTTATCATTTGGGTA 58.986 43.478 19.83 0.00 0.00 3.69
3242 4260 4.461081 GTGTGGCACTTATCATTTGGGTAA 59.539 41.667 19.83 0.00 0.00 2.85
3243 4261 4.461081 TGTGGCACTTATCATTTGGGTAAC 59.539 41.667 19.83 0.00 0.00 2.50
3244 4262 4.461081 GTGGCACTTATCATTTGGGTAACA 59.539 41.667 11.13 0.00 39.74 2.41
3245 4263 5.127031 GTGGCACTTATCATTTGGGTAACAT 59.873 40.000 11.13 0.00 39.74 2.71
3246 4264 5.719085 TGGCACTTATCATTTGGGTAACATT 59.281 36.000 0.00 0.00 39.74 2.71
3247 4265 6.212388 TGGCACTTATCATTTGGGTAACATTT 59.788 34.615 0.00 0.00 39.74 2.32
3248 4266 7.102993 GGCACTTATCATTTGGGTAACATTTT 58.897 34.615 0.00 0.00 39.74 1.82
3249 4267 8.254508 GGCACTTATCATTTGGGTAACATTTTA 58.745 33.333 0.00 0.00 39.74 1.52
3337 4367 6.726490 AACATGTACAATATACTCCCGAGT 57.274 37.500 0.00 2.41 45.02 4.18
3366 4396 1.564348 AGGGTTTCTTGGAGTGTGTGT 59.436 47.619 0.00 0.00 0.00 3.72
3370 4400 2.747446 GTTTCTTGGAGTGTGTGTGTGT 59.253 45.455 0.00 0.00 0.00 3.72
3371 4401 2.779755 TCTTGGAGTGTGTGTGTGTT 57.220 45.000 0.00 0.00 0.00 3.32
3372 4402 2.355197 TCTTGGAGTGTGTGTGTGTTG 58.645 47.619 0.00 0.00 0.00 3.33
3373 4403 2.083774 CTTGGAGTGTGTGTGTGTTGT 58.916 47.619 0.00 0.00 0.00 3.32
3374 4404 1.447945 TGGAGTGTGTGTGTGTTGTG 58.552 50.000 0.00 0.00 0.00 3.33
3375 4405 1.271108 TGGAGTGTGTGTGTGTTGTGT 60.271 47.619 0.00 0.00 0.00 3.72
3376 4406 1.130373 GGAGTGTGTGTGTGTTGTGTG 59.870 52.381 0.00 0.00 0.00 3.82
3377 4407 1.804151 GAGTGTGTGTGTGTTGTGTGT 59.196 47.619 0.00 0.00 0.00 3.72
3378 4408 1.535028 AGTGTGTGTGTGTTGTGTGTG 59.465 47.619 0.00 0.00 0.00 3.82
3379 4409 0.877743 TGTGTGTGTGTTGTGTGTGG 59.122 50.000 0.00 0.00 0.00 4.17
3380 4410 0.170116 GTGTGTGTGTTGTGTGTGGG 59.830 55.000 0.00 0.00 0.00 4.61
3381 4411 0.962855 TGTGTGTGTTGTGTGTGGGG 60.963 55.000 0.00 0.00 0.00 4.96
3382 4412 1.379176 TGTGTGTTGTGTGTGGGGG 60.379 57.895 0.00 0.00 0.00 5.40
3404 4434 4.868116 GGGGGCGTGTGTGTGTGT 62.868 66.667 0.00 0.00 0.00 3.72
3405 4435 3.582120 GGGGCGTGTGTGTGTGTG 61.582 66.667 0.00 0.00 0.00 3.82
3406 4436 2.822255 GGGCGTGTGTGTGTGTGT 60.822 61.111 0.00 0.00 0.00 3.72
3407 4437 2.403186 GGCGTGTGTGTGTGTGTG 59.597 61.111 0.00 0.00 0.00 3.82
3408 4438 2.395360 GGCGTGTGTGTGTGTGTGT 61.395 57.895 0.00 0.00 0.00 3.72
3409 4439 1.225991 GCGTGTGTGTGTGTGTGTG 60.226 57.895 0.00 0.00 0.00 3.82
3410 4440 1.225991 CGTGTGTGTGTGTGTGTGC 60.226 57.895 0.00 0.00 0.00 4.57
3445 4475 4.253685 TGAGATCGATTCAAGGGTTCAAC 58.746 43.478 0.00 0.00 0.00 3.18
3446 4476 4.020218 TGAGATCGATTCAAGGGTTCAACT 60.020 41.667 0.00 0.00 0.00 3.16
3458 4498 3.641906 AGGGTTCAACTATGACGATAGGG 59.358 47.826 0.00 0.00 43.77 3.53
3460 4500 3.181469 GGTTCAACTATGACGATAGGGCA 60.181 47.826 0.00 0.00 43.77 5.36
3491 4748 3.725634 AGGAGCAACCCTATTGTAGAGT 58.274 45.455 0.00 0.00 40.05 3.24
3498 4755 3.917300 ACCCTATTGTAGAGTCTCAGGG 58.083 50.000 15.91 15.91 45.65 4.45
3517 4774 1.530323 GGACCACTAACATTTGCCGT 58.470 50.000 0.00 0.00 0.00 5.68
3520 4777 2.550606 GACCACTAACATTTGCCGTTCA 59.449 45.455 0.00 0.00 0.00 3.18
3528 4786 3.214328 ACATTTGCCGTTCAAGTCTTCT 58.786 40.909 0.00 0.00 35.84 2.85
3532 4790 4.330944 TTGCCGTTCAAGTCTTCTTAGA 57.669 40.909 0.00 0.00 32.07 2.10
3537 4795 7.103641 TGCCGTTCAAGTCTTCTTAGAATAAT 58.896 34.615 0.00 0.00 32.07 1.28
3539 4797 9.262358 GCCGTTCAAGTCTTCTTAGAATAATAT 57.738 33.333 0.00 0.00 32.07 1.28
3562 4820 5.664294 TCTACAACGATTAGGGTTGCTTA 57.336 39.130 4.70 0.00 46.65 3.09
3567 4825 4.454728 ACGATTAGGGTTGCTTACGTTA 57.545 40.909 0.00 0.00 0.00 3.18
3568 4826 4.176271 ACGATTAGGGTTGCTTACGTTAC 58.824 43.478 0.00 0.00 0.00 2.50
3580 4838 3.683340 GCTTACGTTACTCCCCTTCTTTG 59.317 47.826 0.00 0.00 0.00 2.77
3596 4854 6.492087 CCCTTCTTTGTTCTACCAACCAAATA 59.508 38.462 0.00 0.00 0.00 1.40
3599 4857 9.981114 CTTCTTTGTTCTACCAACCAAATATTT 57.019 29.630 0.00 0.00 0.00 1.40
3638 4897 7.862372 GCAAACAAATATATCGTGATCACCAAT 59.138 33.333 20.03 15.35 0.00 3.16
3684 4946 4.612264 AAGTTTAAGCCGACTTCACCTA 57.388 40.909 0.00 0.00 37.33 3.08
3715 4977 1.376812 GAAATCCAACGCCCGTCCT 60.377 57.895 0.00 0.00 0.00 3.85
3746 5008 1.865340 GTCGACGCCTGAAGTTTCTTT 59.135 47.619 0.00 0.00 0.00 2.52
3761 5023 2.899303 TCTTTTTCCTAGCCCCCAAG 57.101 50.000 0.00 0.00 0.00 3.61
3768 5030 2.606519 TAGCCCCCAAGCAGTCGT 60.607 61.111 0.00 0.00 34.23 4.34
3771 5033 4.003788 CCCCCAAGCAGTCGTCGT 62.004 66.667 0.00 0.00 0.00 4.34
3797 5059 4.208632 GCTGGCAGCTATTGTCGT 57.791 55.556 31.37 0.00 38.45 4.34
3825 5087 4.986774 ACCGCCCCAACCTACCCA 62.987 66.667 0.00 0.00 0.00 4.51
3839 5101 0.978667 TACCCAAGCCGCCATGTCTA 60.979 55.000 0.00 0.00 0.00 2.59
3857 5120 1.828461 TATTGTGTCGTCGCCCCCAA 61.828 55.000 0.00 0.00 0.00 4.12
3886 5149 1.380650 AAACCCCGCACACCAACTT 60.381 52.632 0.00 0.00 0.00 2.66
3887 5150 0.973496 AAACCCCGCACACCAACTTT 60.973 50.000 0.00 0.00 0.00 2.66
3918 5181 4.018870 TGACCCTGCATATGAACCTGTTAA 60.019 41.667 6.97 0.00 0.00 2.01
3948 5212 0.537188 TCCTTCGTTGGAGATGCCTC 59.463 55.000 0.00 0.00 38.70 4.70
3961 5225 3.011517 GCCTCCTTCCCTGCCTCA 61.012 66.667 0.00 0.00 0.00 3.86
3965 5229 0.906756 CTCCTTCCCTGCCTCAGTCA 60.907 60.000 0.00 0.00 0.00 3.41
3966 5230 0.906756 TCCTTCCCTGCCTCAGTCAG 60.907 60.000 0.00 0.00 0.00 3.51
3970 5234 3.797331 CCTGCCTCAGTCAGGTCA 58.203 61.111 0.00 0.00 45.61 4.02
3971 5235 2.294890 CCTGCCTCAGTCAGGTCAT 58.705 57.895 0.00 0.00 45.61 3.06
3974 5238 1.002888 CTGCCTCAGTCAGGTCATTGT 59.997 52.381 0.00 0.00 45.61 2.71
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.052104 CGGGAGGCCATTTTGACCC 61.052 63.158 5.01 4.94 0.00 4.46
3 4 1.340600 CCTAACGGGAGGCCATTTTGA 60.341 52.381 5.01 0.00 37.23 2.69
6 7 2.704719 TCCTAACGGGAGGCCATTT 58.295 52.632 5.01 0.00 39.58 2.32
18 19 7.822658 AGATGCTCTAATCGTTCTATCCTAAC 58.177 38.462 0.00 0.00 0.00 2.34
19 20 7.121463 GGAGATGCTCTAATCGTTCTATCCTAA 59.879 40.741 0.00 0.00 0.00 2.69
20 21 6.600032 GGAGATGCTCTAATCGTTCTATCCTA 59.400 42.308 0.00 0.00 0.00 2.94
21 22 5.417580 GGAGATGCTCTAATCGTTCTATCCT 59.582 44.000 0.00 0.00 0.00 3.24
22 23 5.184096 TGGAGATGCTCTAATCGTTCTATCC 59.816 44.000 0.00 0.00 0.00 2.59
23 24 6.260870 TGGAGATGCTCTAATCGTTCTATC 57.739 41.667 0.00 0.00 0.00 2.08
24 25 6.040955 TGTTGGAGATGCTCTAATCGTTCTAT 59.959 38.462 0.00 0.00 33.81 1.98
25 26 5.359860 TGTTGGAGATGCTCTAATCGTTCTA 59.640 40.000 0.00 0.00 33.81 2.10
26 27 4.160439 TGTTGGAGATGCTCTAATCGTTCT 59.840 41.667 0.00 0.00 33.81 3.01
27 28 4.433615 TGTTGGAGATGCTCTAATCGTTC 58.566 43.478 0.00 0.00 33.81 3.95
28 29 4.437239 CTGTTGGAGATGCTCTAATCGTT 58.563 43.478 0.00 0.00 33.81 3.85
29 30 3.739519 GCTGTTGGAGATGCTCTAATCGT 60.740 47.826 0.00 0.00 33.81 3.73
30 31 2.799412 GCTGTTGGAGATGCTCTAATCG 59.201 50.000 0.00 0.00 33.81 3.34
176 177 3.801114 AATACACTGCGTGAGATAGCA 57.199 42.857 14.18 0.00 41.55 3.49
185 186 2.038269 CGCCCCAAATACACTGCGT 61.038 57.895 0.00 0.00 37.44 5.24
189 190 2.044352 GGGCGCCCCAAATACACT 60.044 61.111 36.64 0.00 44.65 3.55
258 261 3.771160 CGCGTGGGGCTTAGGAGT 61.771 66.667 0.00 0.00 40.44 3.85
289 292 2.268076 GCGTCCATGGGTGCAGTTT 61.268 57.895 20.12 0.00 0.00 2.66
613 626 3.622060 AACATTGGGGAGCCGTCCG 62.622 63.158 0.00 0.00 45.05 4.79
614 627 1.304134 AAACATTGGGGAGCCGTCC 60.304 57.895 0.00 0.00 43.05 4.79
615 628 0.608035 TGAAACATTGGGGAGCCGTC 60.608 55.000 0.00 0.00 0.00 4.79
616 629 0.178975 TTGAAACATTGGGGAGCCGT 60.179 50.000 0.00 0.00 0.00 5.68
617 630 0.965439 TTTGAAACATTGGGGAGCCG 59.035 50.000 0.00 0.00 0.00 5.52
618 631 3.007831 TGAATTTGAAACATTGGGGAGCC 59.992 43.478 0.00 0.00 0.00 4.70
619 632 4.270245 TGAATTTGAAACATTGGGGAGC 57.730 40.909 0.00 0.00 0.00 4.70
620 633 7.748691 AAAATGAATTTGAAACATTGGGGAG 57.251 32.000 0.00 0.00 35.00 4.30
642 655 7.834803 TGCATATATGACATTTTGGACACAAA 58.165 30.769 17.10 0.00 44.40 2.83
643 656 7.401955 TGCATATATGACATTTTGGACACAA 57.598 32.000 17.10 0.00 34.07 3.33
644 657 7.401955 TTGCATATATGACATTTTGGACACA 57.598 32.000 17.10 0.00 0.00 3.72
645 658 7.095940 GCATTGCATATATGACATTTTGGACAC 60.096 37.037 17.10 0.00 0.00 3.67
646 659 6.924612 GCATTGCATATATGACATTTTGGACA 59.075 34.615 17.10 0.00 0.00 4.02
647 660 6.366877 GGCATTGCATATATGACATTTTGGAC 59.633 38.462 17.10 0.00 31.11 4.02
648 661 6.457355 GGCATTGCATATATGACATTTTGGA 58.543 36.000 17.10 0.00 31.11 3.53
649 662 5.640357 GGGCATTGCATATATGACATTTTGG 59.360 40.000 17.10 4.18 32.44 3.28
650 663 5.640357 GGGGCATTGCATATATGACATTTTG 59.360 40.000 17.10 11.67 32.44 2.44
651 664 5.567224 CGGGGCATTGCATATATGACATTTT 60.567 40.000 17.10 0.86 32.44 1.82
652 665 4.082081 CGGGGCATTGCATATATGACATTT 60.082 41.667 17.10 2.97 32.44 2.32
653 666 3.444742 CGGGGCATTGCATATATGACATT 59.555 43.478 17.10 7.59 32.44 2.71
654 667 3.018856 CGGGGCATTGCATATATGACAT 58.981 45.455 17.10 4.24 32.44 3.06
655 668 2.435422 CGGGGCATTGCATATATGACA 58.565 47.619 17.10 10.76 32.44 3.58
656 669 1.745087 CCGGGGCATTGCATATATGAC 59.255 52.381 17.10 8.34 0.00 3.06
657 670 1.954733 GCCGGGGCATTGCATATATGA 60.955 52.381 17.10 0.00 41.49 2.15
658 671 0.457035 GCCGGGGCATTGCATATATG 59.543 55.000 11.39 8.45 41.49 1.78
659 672 1.031571 CGCCGGGGCATTGCATATAT 61.032 55.000 11.39 0.00 42.06 0.86
660 673 1.673993 CGCCGGGGCATTGCATATA 60.674 57.895 11.39 0.00 42.06 0.86
661 674 2.985282 CGCCGGGGCATTGCATAT 60.985 61.111 11.39 0.00 42.06 1.78
662 675 4.182433 TCGCCGGGGCATTGCATA 62.182 61.111 14.85 0.00 42.06 3.14
696 709 0.040781 GCTCCAGCAACGCGTAAAAA 60.041 50.000 14.46 0.00 41.59 1.94
697 710 1.572447 GCTCCAGCAACGCGTAAAA 59.428 52.632 14.46 0.00 41.59 1.52
698 711 3.249999 GCTCCAGCAACGCGTAAA 58.750 55.556 14.46 0.00 41.59 2.01
726 739 3.876198 AGCCGCGCTAAAATGCCG 61.876 61.111 5.56 0.00 36.99 5.69
727 740 2.278142 CAGCCGCGCTAAAATGCC 60.278 61.111 5.56 0.00 36.40 4.40
728 741 1.154035 AACAGCCGCGCTAAAATGC 60.154 52.632 5.56 0.00 36.40 3.56
729 742 0.167908 TCAACAGCCGCGCTAAAATG 59.832 50.000 5.56 0.00 36.40 2.32
730 743 0.878416 TTCAACAGCCGCGCTAAAAT 59.122 45.000 5.56 0.00 36.40 1.82
731 744 0.237235 CTTCAACAGCCGCGCTAAAA 59.763 50.000 5.56 0.00 36.40 1.52
732 745 1.866237 CTTCAACAGCCGCGCTAAA 59.134 52.632 5.56 0.00 36.40 1.85
733 746 2.677003 GCTTCAACAGCCGCGCTAA 61.677 57.895 5.56 0.00 43.65 3.09
734 747 3.118454 GCTTCAACAGCCGCGCTA 61.118 61.111 5.56 0.00 43.65 4.26
756 769 3.959975 TTTTGCACGGCCGTCAGC 61.960 61.111 31.80 29.73 42.60 4.26
757 770 2.051345 GTTTTGCACGGCCGTCAG 60.051 61.111 31.80 20.39 0.00 3.51
758 771 3.587933 GGTTTTGCACGGCCGTCA 61.588 61.111 31.80 25.44 0.00 4.35
759 772 3.536498 CTGGTTTTGCACGGCCGTC 62.536 63.158 31.80 23.06 0.00 4.79
760 773 3.591835 CTGGTTTTGCACGGCCGT 61.592 61.111 28.70 28.70 0.00 5.68
761 774 4.999939 GCTGGTTTTGCACGGCCG 63.000 66.667 26.86 26.86 0.00 6.13
762 775 4.662961 GGCTGGTTTTGCACGGCC 62.663 66.667 8.96 8.96 37.65 6.13
763 776 4.999939 CGGCTGGTTTTGCACGGC 63.000 66.667 0.00 0.00 0.00 5.68
764 777 2.840066 TTCGGCTGGTTTTGCACGG 61.840 57.895 0.00 0.00 0.00 4.94
765 778 1.657181 GTTCGGCTGGTTTTGCACG 60.657 57.895 0.00 0.00 0.00 5.34
766 779 1.657181 CGTTCGGCTGGTTTTGCAC 60.657 57.895 0.00 0.00 0.00 4.57
767 780 2.718731 CGTTCGGCTGGTTTTGCA 59.281 55.556 0.00 0.00 0.00 4.08
768 781 2.050442 CCGTTCGGCTGGTTTTGC 60.050 61.111 0.00 0.00 0.00 3.68
769 782 2.050442 GCCGTTCGGCTGGTTTTG 60.050 61.111 25.91 0.00 46.99 2.44
785 798 3.588891 AAACTAGTTTGCCGCGCGC 62.589 57.895 27.36 23.91 38.31 6.86
786 799 0.659123 AAAAACTAGTTTGCCGCGCG 60.659 50.000 25.67 25.67 32.36 6.86
787 800 3.173247 AAAAACTAGTTTGCCGCGC 57.827 47.368 21.22 0.00 32.36 6.86
816 829 4.430423 CCGACAGTCGCGCTTTGC 62.430 66.667 18.02 0.00 38.82 3.68
817 830 2.720758 CTCCGACAGTCGCGCTTTG 61.721 63.158 18.02 2.84 38.82 2.77
818 831 2.214181 ATCTCCGACAGTCGCGCTTT 62.214 55.000 18.02 0.00 38.82 3.51
819 832 2.701780 ATCTCCGACAGTCGCGCTT 61.702 57.895 18.02 0.00 38.82 4.68
820 833 3.134792 ATCTCCGACAGTCGCGCT 61.135 61.111 18.02 0.00 38.82 5.92
821 834 2.951745 CATCTCCGACAGTCGCGC 60.952 66.667 18.02 0.00 38.82 6.86
822 835 2.951745 GCATCTCCGACAGTCGCG 60.952 66.667 18.02 10.91 38.82 5.87
823 836 1.587613 GAGCATCTCCGACAGTCGC 60.588 63.158 18.02 2.50 38.82 5.19
824 837 4.700037 GAGCATCTCCGACAGTCG 57.300 61.111 16.50 16.50 40.07 4.18
835 848 0.528684 AAGACGCGCCTAAGAGCATC 60.529 55.000 5.73 0.00 39.00 3.91
836 849 0.807667 CAAGACGCGCCTAAGAGCAT 60.808 55.000 5.73 0.00 39.00 3.79
837 850 1.446099 CAAGACGCGCCTAAGAGCA 60.446 57.895 5.73 0.00 39.00 4.26
838 851 0.179145 TACAAGACGCGCCTAAGAGC 60.179 55.000 5.73 0.00 35.12 4.09
839 852 1.918609 GTTACAAGACGCGCCTAAGAG 59.081 52.381 5.73 0.00 0.00 2.85
840 853 1.542915 AGTTACAAGACGCGCCTAAGA 59.457 47.619 5.73 0.00 0.00 2.10
841 854 1.992170 AGTTACAAGACGCGCCTAAG 58.008 50.000 5.73 0.00 0.00 2.18
842 855 2.489329 ACTAGTTACAAGACGCGCCTAA 59.511 45.455 5.73 0.00 0.00 2.69
845 858 1.266466 GACTAGTTACAAGACGCGCC 58.734 55.000 5.73 0.00 0.00 6.53
853 866 1.263356 AGGCAGCGGACTAGTTACAA 58.737 50.000 0.00 0.00 0.00 2.41
927 945 5.627499 AGCTGCAAATGAATTCTACGAAA 57.373 34.783 7.05 0.00 0.00 3.46
928 946 4.201714 CGAGCTGCAAATGAATTCTACGAA 60.202 41.667 7.05 0.00 0.00 3.85
977 998 6.241882 TCACGATTATTTGATGGGACCTTA 57.758 37.500 0.00 0.00 0.00 2.69
982 1003 7.819415 GTGATAGATCACGATTATTTGATGGGA 59.181 37.037 6.89 0.00 46.46 4.37
1715 1946 2.346541 GCCTTTCTCTTGCAGCCCC 61.347 63.158 0.00 0.00 0.00 5.80
1975 2218 2.203070 GGATTGAGGCGCGACCAT 60.203 61.111 9.25 0.00 43.14 3.55
2357 2677 5.512232 GGTTCTTGATCTTGACAGAGGAAGT 60.512 44.000 0.00 0.00 30.36 3.01
2560 3528 2.875485 CTTCTTCCTCGTCGCGGA 59.125 61.111 6.13 0.00 0.00 5.54
2576 3544 1.893808 CGGCCACTCAACAACAGCT 60.894 57.895 2.24 0.00 0.00 4.24
2614 3582 4.778415 CGAGTGCTGGGTCCGACG 62.778 72.222 0.00 0.00 0.00 5.12
2694 3662 7.105588 ACATGGAATACATACATGATGCGTAT 58.894 34.615 7.62 0.00 43.46 3.06
2709 3677 6.148150 TCACTACGGTTTTTGACATGGAATAC 59.852 38.462 0.00 0.00 0.00 1.89
2710 3678 6.231951 TCACTACGGTTTTTGACATGGAATA 58.768 36.000 0.00 0.00 0.00 1.75
2713 3681 4.074627 TCACTACGGTTTTTGACATGGA 57.925 40.909 0.00 0.00 0.00 3.41
2714 3682 4.822036 TTCACTACGGTTTTTGACATGG 57.178 40.909 0.00 0.00 0.00 3.66
2786 3764 8.522830 GTTCATCCAAAAAGAACAATATGGAGA 58.477 33.333 0.00 0.00 40.06 3.71
2787 3765 8.306038 TGTTCATCCAAAAAGAACAATATGGAG 58.694 33.333 4.90 0.00 45.95 3.86
2788 3766 8.187913 TGTTCATCCAAAAAGAACAATATGGA 57.812 30.769 4.90 0.00 45.95 3.41
2795 3773 4.584325 CCCTCTGTTCATCCAAAAAGAACA 59.416 41.667 6.98 6.98 46.53 3.18
2831 3838 4.156739 GGACCAAACTGAGGATTGCTAAAG 59.843 45.833 0.00 0.00 0.00 1.85
2846 3853 3.000727 CGTACAAGGAGATGGACCAAAC 58.999 50.000 0.00 0.00 29.81 2.93
2854 3861 1.115467 AGGAGGCGTACAAGGAGATG 58.885 55.000 0.00 0.00 0.00 2.90
2867 3874 2.743928 CGTGACAGGCAAGGAGGC 60.744 66.667 0.00 0.00 44.61 4.70
2881 3888 3.185246 ACTCCATTCATAGGAAGCGTG 57.815 47.619 0.00 0.00 36.25 5.34
2883 3890 4.272018 CAGAAACTCCATTCATAGGAAGCG 59.728 45.833 0.00 0.00 36.25 4.68
2889 3896 8.503458 AGTTGAATCAGAAACTCCATTCATAG 57.497 34.615 0.00 0.00 35.65 2.23
3009 4027 1.078709 CACGTGTGGCACTTATCAGG 58.921 55.000 19.83 6.20 31.34 3.86
3010 4028 1.460743 CACACGTGTGGCACTTATCAG 59.539 52.381 35.65 10.09 42.10 2.90
3011 4029 1.507562 CACACGTGTGGCACTTATCA 58.492 50.000 35.65 0.00 42.10 2.15
3012 4030 0.165944 GCACACGTGTGGCACTTATC 59.834 55.000 40.73 22.88 45.72 1.75
3013 4031 2.244000 GCACACGTGTGGCACTTAT 58.756 52.632 40.73 7.26 45.72 1.73
3032 4050 0.238289 GGAGTTGCCATGTGTTCGTG 59.762 55.000 0.00 0.00 36.34 4.35
3033 4051 1.227999 CGGAGTTGCCATGTGTTCGT 61.228 55.000 0.00 0.00 35.94 3.85
3036 4054 0.951558 GTTCGGAGTTGCCATGTGTT 59.048 50.000 0.00 0.00 35.94 3.32
3037 4055 0.179032 TGTTCGGAGTTGCCATGTGT 60.179 50.000 0.00 0.00 35.94 3.72
3040 4058 3.302365 AAAATGTTCGGAGTTGCCATG 57.698 42.857 0.00 0.00 35.94 3.66
3058 4076 6.216569 TGCGTCATTAAACTTGCCATAAAAA 58.783 32.000 0.00 0.00 0.00 1.94
3059 4077 5.773575 TGCGTCATTAAACTTGCCATAAAA 58.226 33.333 0.00 0.00 0.00 1.52
3060 4078 5.378292 TGCGTCATTAAACTTGCCATAAA 57.622 34.783 0.00 0.00 0.00 1.40
3061 4079 5.378292 TTGCGTCATTAAACTTGCCATAA 57.622 34.783 0.00 0.00 0.00 1.90
3062 4080 4.142491 CCTTGCGTCATTAAACTTGCCATA 60.142 41.667 0.00 0.00 0.00 2.74
3063 4081 3.367292 CCTTGCGTCATTAAACTTGCCAT 60.367 43.478 0.00 0.00 0.00 4.40
3064 4082 2.030363 CCTTGCGTCATTAAACTTGCCA 60.030 45.455 0.00 0.00 0.00 4.92
3065 4083 2.227865 TCCTTGCGTCATTAAACTTGCC 59.772 45.455 0.00 0.00 0.00 4.52
3066 4084 3.552604 TCCTTGCGTCATTAAACTTGC 57.447 42.857 0.00 0.00 0.00 4.01
3067 4085 5.088739 GTCATCCTTGCGTCATTAAACTTG 58.911 41.667 0.00 0.00 0.00 3.16
3068 4086 4.759693 TGTCATCCTTGCGTCATTAAACTT 59.240 37.500 0.00 0.00 0.00 2.66
3069 4087 4.323417 TGTCATCCTTGCGTCATTAAACT 58.677 39.130 0.00 0.00 0.00 2.66
3070 4088 4.678509 TGTCATCCTTGCGTCATTAAAC 57.321 40.909 0.00 0.00 0.00 2.01
3071 4089 4.759693 AGTTGTCATCCTTGCGTCATTAAA 59.240 37.500 0.00 0.00 0.00 1.52
3072 4090 4.323417 AGTTGTCATCCTTGCGTCATTAA 58.677 39.130 0.00 0.00 0.00 1.40
3073 4091 3.937814 AGTTGTCATCCTTGCGTCATTA 58.062 40.909 0.00 0.00 0.00 1.90
3074 4092 2.783135 AGTTGTCATCCTTGCGTCATT 58.217 42.857 0.00 0.00 0.00 2.57
3075 4093 2.479566 AGTTGTCATCCTTGCGTCAT 57.520 45.000 0.00 0.00 0.00 3.06
3076 4094 2.254546 AAGTTGTCATCCTTGCGTCA 57.745 45.000 0.00 0.00 0.00 4.35
3077 4095 3.746492 ACTAAAGTTGTCATCCTTGCGTC 59.254 43.478 0.00 0.00 0.00 5.19
3078 4096 3.740115 ACTAAAGTTGTCATCCTTGCGT 58.260 40.909 0.00 0.00 0.00 5.24
3079 4097 4.749245 AACTAAAGTTGTCATCCTTGCG 57.251 40.909 0.00 0.00 36.80 4.85
3091 4109 3.636300 TGCCATGCTTGACAACTAAAGTT 59.364 39.130 0.22 0.00 39.12 2.66
3092 4110 3.221771 TGCCATGCTTGACAACTAAAGT 58.778 40.909 0.22 0.00 0.00 2.66
3093 4111 3.921119 TGCCATGCTTGACAACTAAAG 57.079 42.857 0.22 0.00 0.00 1.85
3094 4112 3.976169 GTTGCCATGCTTGACAACTAAA 58.024 40.909 19.93 0.00 39.39 1.85
3095 4113 3.641437 GTTGCCATGCTTGACAACTAA 57.359 42.857 19.93 0.00 39.39 2.24
3097 4115 1.696063 AGTTGCCATGCTTGACAACT 58.304 45.000 22.89 22.89 45.86 3.16
3098 4116 2.035066 AGAAGTTGCCATGCTTGACAAC 59.965 45.455 19.71 19.71 42.08 3.32
3099 4117 2.309613 AGAAGTTGCCATGCTTGACAA 58.690 42.857 0.22 0.00 0.00 3.18
3100 4118 1.985473 AGAAGTTGCCATGCTTGACA 58.015 45.000 0.22 0.00 0.00 3.58
3101 4119 3.375782 AAAGAAGTTGCCATGCTTGAC 57.624 42.857 0.22 0.00 0.00 3.18
3102 4120 3.550639 CGAAAAGAAGTTGCCATGCTTGA 60.551 43.478 0.22 0.00 0.00 3.02
3103 4121 2.727798 CGAAAAGAAGTTGCCATGCTTG 59.272 45.455 0.00 0.00 0.00 4.01
3104 4122 2.288395 CCGAAAAGAAGTTGCCATGCTT 60.288 45.455 0.00 0.00 0.00 3.91
3105 4123 1.270550 CCGAAAAGAAGTTGCCATGCT 59.729 47.619 0.00 0.00 0.00 3.79
3106 4124 1.269448 TCCGAAAAGAAGTTGCCATGC 59.731 47.619 0.00 0.00 0.00 4.06
3107 4125 3.568538 CTTCCGAAAAGAAGTTGCCATG 58.431 45.455 0.00 0.00 38.76 3.66
3108 4126 2.558359 CCTTCCGAAAAGAAGTTGCCAT 59.442 45.455 1.04 0.00 41.45 4.40
3109 4127 1.953686 CCTTCCGAAAAGAAGTTGCCA 59.046 47.619 1.04 0.00 41.45 4.92
3110 4128 1.335964 GCCTTCCGAAAAGAAGTTGCC 60.336 52.381 1.04 0.00 41.45 4.52
3111 4129 1.336755 TGCCTTCCGAAAAGAAGTTGC 59.663 47.619 1.04 0.00 41.45 4.17
3112 4130 3.066760 ACTTGCCTTCCGAAAAGAAGTTG 59.933 43.478 1.04 0.00 41.45 3.16
3113 4131 3.288092 ACTTGCCTTCCGAAAAGAAGTT 58.712 40.909 1.04 0.00 41.45 2.66
3114 4132 2.932261 ACTTGCCTTCCGAAAAGAAGT 58.068 42.857 1.04 0.00 41.45 3.01
3115 4133 3.990318 AACTTGCCTTCCGAAAAGAAG 57.010 42.857 0.00 0.00 42.46 2.85
3116 4134 3.697045 TGAAACTTGCCTTCCGAAAAGAA 59.303 39.130 0.00 0.00 0.00 2.52
3117 4135 3.283751 TGAAACTTGCCTTCCGAAAAGA 58.716 40.909 0.00 0.00 0.00 2.52
3118 4136 3.066760 ACTGAAACTTGCCTTCCGAAAAG 59.933 43.478 0.00 0.00 0.00 2.27
3119 4137 3.020984 ACTGAAACTTGCCTTCCGAAAA 58.979 40.909 0.00 0.00 0.00 2.29
3120 4138 2.650322 ACTGAAACTTGCCTTCCGAAA 58.350 42.857 0.00 0.00 0.00 3.46
3121 4139 2.341846 ACTGAAACTTGCCTTCCGAA 57.658 45.000 0.00 0.00 0.00 4.30
3122 4140 2.341846 AACTGAAACTTGCCTTCCGA 57.658 45.000 0.00 0.00 0.00 4.55
3123 4141 3.436700 AAAACTGAAACTTGCCTTCCG 57.563 42.857 0.00 0.00 0.00 4.30
3158 4176 3.865164 GCTAAAATTGCCATCCGAAAAGG 59.135 43.478 0.00 0.00 42.97 3.11
3159 4177 4.563976 CAGCTAAAATTGCCATCCGAAAAG 59.436 41.667 0.00 0.00 0.00 2.27
3160 4178 4.021544 ACAGCTAAAATTGCCATCCGAAAA 60.022 37.500 0.00 0.00 0.00 2.29
3161 4179 3.509575 ACAGCTAAAATTGCCATCCGAAA 59.490 39.130 0.00 0.00 0.00 3.46
3162 4180 3.088532 ACAGCTAAAATTGCCATCCGAA 58.911 40.909 0.00 0.00 0.00 4.30
3163 4181 2.722094 ACAGCTAAAATTGCCATCCGA 58.278 42.857 0.00 0.00 0.00 4.55
3164 4182 4.630894 TTACAGCTAAAATTGCCATCCG 57.369 40.909 0.00 0.00 0.00 4.18
3185 4203 0.182775 ACTCCAGCCCTGACGTTTTT 59.817 50.000 0.00 0.00 0.00 1.94
3186 4204 0.535102 CACTCCAGCCCTGACGTTTT 60.535 55.000 0.00 0.00 0.00 2.43
3187 4205 1.071471 CACTCCAGCCCTGACGTTT 59.929 57.895 0.00 0.00 0.00 3.60
3188 4206 2.743718 CACTCCAGCCCTGACGTT 59.256 61.111 0.00 0.00 0.00 3.99
3189 4207 4.008933 GCACTCCAGCCCTGACGT 62.009 66.667 0.00 0.00 0.00 4.34
3190 4208 3.245668 AAGCACTCCAGCCCTGACG 62.246 63.158 0.00 0.00 34.23 4.35
3191 4209 1.376553 GAAGCACTCCAGCCCTGAC 60.377 63.158 0.00 0.00 34.23 3.51
3192 4210 2.947532 CGAAGCACTCCAGCCCTGA 61.948 63.158 0.00 0.00 34.23 3.86
3193 4211 2.435586 CGAAGCACTCCAGCCCTG 60.436 66.667 0.00 0.00 34.23 4.45
3194 4212 2.925170 ACGAAGCACTCCAGCCCT 60.925 61.111 0.00 0.00 34.23 5.19
3195 4213 2.743928 CACGAAGCACTCCAGCCC 60.744 66.667 0.00 0.00 34.23 5.19
3196 4214 3.426568 GCACGAAGCACTCCAGCC 61.427 66.667 0.00 0.00 44.79 4.85
3213 4231 2.899976 TGATAAGTGCCACACGTATGG 58.100 47.619 8.99 8.99 38.65 2.74
3214 4232 5.265477 CAAATGATAAGTGCCACACGTATG 58.735 41.667 10.24 0.00 38.65 2.39
3215 4233 4.335315 CCAAATGATAAGTGCCACACGTAT 59.665 41.667 5.97 5.97 40.53 3.06
3216 4234 3.687212 CCAAATGATAAGTGCCACACGTA 59.313 43.478 0.00 0.00 39.64 3.57
3217 4235 2.487762 CCAAATGATAAGTGCCACACGT 59.512 45.455 0.00 0.00 39.64 4.49
3218 4236 2.159393 CCCAAATGATAAGTGCCACACG 60.159 50.000 0.00 0.00 39.64 4.49
3219 4237 2.825532 ACCCAAATGATAAGTGCCACAC 59.174 45.455 0.00 0.00 34.10 3.82
3220 4238 3.168035 ACCCAAATGATAAGTGCCACA 57.832 42.857 0.00 0.00 0.00 4.17
3221 4239 4.461081 TGTTACCCAAATGATAAGTGCCAC 59.539 41.667 0.00 0.00 0.00 5.01
3222 4240 4.667573 TGTTACCCAAATGATAAGTGCCA 58.332 39.130 0.00 0.00 0.00 4.92
3223 4241 5.852282 ATGTTACCCAAATGATAAGTGCC 57.148 39.130 0.00 0.00 0.00 5.01
3224 4242 9.646427 TTAAAATGTTACCCAAATGATAAGTGC 57.354 29.630 0.00 0.00 0.00 4.40
3319 4345 7.516198 TCCTAAACTCGGGAGTATATTGTAC 57.484 40.000 1.08 0.00 41.58 2.90
3337 4367 6.045106 ACACTCCAAGAAACCCTAATCCTAAA 59.955 38.462 0.00 0.00 0.00 1.85
3387 4417 4.868116 ACACACACACACGCCCCC 62.868 66.667 0.00 0.00 0.00 5.40
3388 4418 3.582120 CACACACACACACGCCCC 61.582 66.667 0.00 0.00 0.00 5.80
3389 4419 2.822255 ACACACACACACACGCCC 60.822 61.111 0.00 0.00 0.00 6.13
3390 4420 2.395360 ACACACACACACACACGCC 61.395 57.895 0.00 0.00 0.00 5.68
3391 4421 1.225991 CACACACACACACACACGC 60.226 57.895 0.00 0.00 0.00 5.34
3392 4422 1.225991 GCACACACACACACACACG 60.226 57.895 0.00 0.00 0.00 4.49
3393 4423 1.225991 CGCACACACACACACACAC 60.226 57.895 0.00 0.00 0.00 3.82
3394 4424 1.669437 ACGCACACACACACACACA 60.669 52.632 0.00 0.00 0.00 3.72
3395 4425 1.225991 CACGCACACACACACACAC 60.226 57.895 0.00 0.00 0.00 3.82
3396 4426 1.231296 AACACGCACACACACACACA 61.231 50.000 0.00 0.00 0.00 3.72
3397 4427 0.722282 TAACACGCACACACACACAC 59.278 50.000 0.00 0.00 0.00 3.82
3398 4428 1.003108 CTAACACGCACACACACACA 58.997 50.000 0.00 0.00 0.00 3.72
3399 4429 0.303493 CCTAACACGCACACACACAC 59.697 55.000 0.00 0.00 0.00 3.82
3400 4430 1.433053 GCCTAACACGCACACACACA 61.433 55.000 0.00 0.00 0.00 3.72
3401 4431 1.278637 GCCTAACACGCACACACAC 59.721 57.895 0.00 0.00 0.00 3.82
3402 4432 2.241190 CGCCTAACACGCACACACA 61.241 57.895 0.00 0.00 0.00 3.72
3403 4433 2.549282 CGCCTAACACGCACACAC 59.451 61.111 0.00 0.00 0.00 3.82
3410 4440 0.924090 GATCTCAAGCGCCTAACACG 59.076 55.000 2.29 0.00 0.00 4.49
3445 4475 3.589988 GACCATTGCCCTATCGTCATAG 58.410 50.000 0.00 0.00 32.86 2.23
3446 4476 2.301870 GGACCATTGCCCTATCGTCATA 59.698 50.000 0.00 0.00 0.00 2.15
3458 4498 1.745653 GTTGCTCCTAAGGACCATTGC 59.254 52.381 0.00 0.00 0.00 3.56
3460 4500 1.285078 GGGTTGCTCCTAAGGACCATT 59.715 52.381 0.00 0.00 36.25 3.16
3473 4513 4.353777 TGAGACTCTACAATAGGGTTGCT 58.646 43.478 3.68 0.00 40.26 3.91
3491 4748 2.642171 ATGTTAGTGGTCCCCTGAGA 57.358 50.000 0.00 0.00 0.00 3.27
3498 4755 1.530323 ACGGCAAATGTTAGTGGTCC 58.470 50.000 0.00 0.00 0.00 4.46
3502 4759 4.024048 AGACTTGAACGGCAAATGTTAGTG 60.024 41.667 0.00 0.00 35.74 2.74
3537 4795 6.229936 AGCAACCCTAATCGTTGTAGAATA 57.770 37.500 2.97 0.00 42.12 1.75
3539 4797 4.546829 AGCAACCCTAATCGTTGTAGAA 57.453 40.909 2.97 0.00 42.12 2.10
3542 4800 4.175516 CGTAAGCAACCCTAATCGTTGTA 58.824 43.478 2.97 0.00 42.12 2.41
3545 4803 3.323751 ACGTAAGCAACCCTAATCGTT 57.676 42.857 0.00 0.00 45.62 3.85
3562 4820 3.390311 AGAACAAAGAAGGGGAGTAACGT 59.610 43.478 0.00 0.00 0.00 3.99
3567 4825 3.323775 TGGTAGAACAAAGAAGGGGAGT 58.676 45.455 0.00 0.00 0.00 3.85
3568 4826 4.072839 GTTGGTAGAACAAAGAAGGGGAG 58.927 47.826 0.00 0.00 31.17 4.30
3580 4838 9.135843 GTTGCTAAAATATTTGGTTGGTAGAAC 57.864 33.333 0.39 2.97 0.00 3.01
3715 4977 1.340248 AGGCGTCGACAAGAAGAAGAA 59.660 47.619 17.16 0.00 0.00 2.52
3746 5008 1.140134 ACTGCTTGGGGGCTAGGAAA 61.140 55.000 0.00 0.00 0.00 3.13
3768 5030 4.687215 GCCAGCTGCAGGTGACGA 62.687 66.667 40.03 0.00 45.66 4.20
3825 5087 1.340017 ACACAATAGACATGGCGGCTT 60.340 47.619 11.43 0.00 0.00 4.35
3839 5101 3.185299 TTGGGGGCGACGACACAAT 62.185 57.895 4.76 0.00 0.00 2.71
3857 5120 1.458927 CGGGGTTTCAAGGGAAGGT 59.541 57.895 0.00 0.00 33.82 3.50
3889 5152 4.830765 TATGCAGGGTCACCGCGC 62.831 66.667 0.00 0.00 43.47 6.86
3918 5181 0.178900 AACGAAGGAGAGGAAGGGGT 60.179 55.000 0.00 0.00 0.00 4.95
3948 5212 1.601171 CTGACTGAGGCAGGGAAGG 59.399 63.158 7.62 0.00 35.51 3.46


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.