Multiple sequence alignment - TraesCS4B01G068500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G068500 chr4B 100.000 4929 0 0 1 4929 61311033 61306105 0.000000e+00 9103.0
1 TraesCS4B01G068500 chr4A 89.080 2271 132 39 1 2177 556825148 556827396 0.000000e+00 2713.0
2 TraesCS4B01G068500 chr4A 93.692 1189 58 10 3124 4306 556828442 556829619 0.000000e+00 1764.0
3 TraesCS4B01G068500 chr4A 94.342 919 43 9 2173 3087 556827423 556828336 0.000000e+00 1400.0
4 TraesCS4B01G068500 chr4A 85.748 428 35 12 4516 4919 556829754 556830179 3.530000e-116 429.0
5 TraesCS4B01G068500 chr4D 89.482 1968 134 40 1165 3087 43068183 43066244 0.000000e+00 2420.0
6 TraesCS4B01G068500 chr4D 94.643 1232 47 11 3083 4306 43066219 43064999 0.000000e+00 1892.0
7 TraesCS4B01G068500 chr4D 92.730 1128 44 12 1 1094 43069691 43068568 0.000000e+00 1594.0
8 TraesCS4B01G068500 chr4D 86.862 647 47 11 4308 4929 43065043 43064410 0.000000e+00 689.0
9 TraesCS4B01G068500 chr5A 89.362 47 2 3 4671 4714 130136504 130136550 6.890000e-04 56.5
10 TraesCS4B01G068500 chr5A 83.077 65 7 3 4671 4732 382759525 382759462 6.890000e-04 56.5
11 TraesCS4B01G068500 chr6D 100.000 29 0 0 4671 4699 58433751 58433779 2.000000e-03 54.7
12 TraesCS4B01G068500 chr6D 100.000 29 0 0 4671 4699 471540000 471540028 2.000000e-03 54.7
13 TraesCS4B01G068500 chr5D 100.000 29 0 0 4671 4699 494809013 494808985 2.000000e-03 54.7
14 TraesCS4B01G068500 chr3D 100.000 29 0 0 4671 4699 362864500 362864528 2.000000e-03 54.7
15 TraesCS4B01G068500 chr1A 100.000 29 0 0 4671 4699 457957377 457957405 2.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G068500 chr4B 61306105 61311033 4928 True 9103.00 9103 100.00000 1 4929 1 chr4B.!!$R1 4928
1 TraesCS4B01G068500 chr4A 556825148 556830179 5031 False 1576.50 2713 90.71550 1 4919 4 chr4A.!!$F1 4918
2 TraesCS4B01G068500 chr4D 43064410 43069691 5281 True 1648.75 2420 90.92925 1 4929 4 chr4D.!!$R1 4928

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
750 817 0.395036 CTCTCTCTCCTCTCCGGCAA 60.395 60.0 0.0 0.0 0.0 4.52 F
1180 1583 0.173708 TTTGTTTGTTGGTGGACGGC 59.826 50.0 0.0 0.0 0.0 5.68 F
2696 3147 0.035152 CCCTGTCAAGCCACTATGCA 60.035 55.0 0.0 0.0 0.0 3.96 F
3358 3884 0.036765 GGCGTTCATGTAGGTCCACA 60.037 55.0 0.0 0.0 0.0 4.17 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2676 3127 0.253044 GCATAGTGGCTTGACAGGGA 59.747 55.000 0.00 0.0 0.00 4.20 R
2800 3251 0.842635 GTCTGGCCCATCTTCCTCAT 59.157 55.000 0.00 0.0 0.00 2.90 R
3659 4185 0.593128 AACATTCAAGTGCACGAGGC 59.407 50.000 12.01 0.0 45.13 4.70 R
4542 5101 1.066002 CATCAACATTCGATGCCACCC 59.934 52.381 0.00 0.0 34.32 4.61 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
34 35 1.336440 CCGGATCTGCAAAACAACACA 59.664 47.619 0.00 0.00 0.00 3.72
35 36 2.605338 CCGGATCTGCAAAACAACACAG 60.605 50.000 0.00 0.00 0.00 3.66
59 60 1.868469 TTTGCATTCACCAAAGCTGC 58.132 45.000 0.00 0.00 0.00 5.25
89 95 3.361977 GCAACCCGCCGTGACATT 61.362 61.111 0.00 0.00 32.94 2.71
90 96 2.560861 CAACCCGCCGTGACATTG 59.439 61.111 0.00 0.00 0.00 2.82
182 188 1.228245 GTTCACCTGGAGGCTTGCA 60.228 57.895 0.00 0.00 39.32 4.08
230 239 5.232838 GCAAAACTCAAACACAGGAGAAATG 59.767 40.000 0.00 0.00 35.17 2.32
643 686 2.695597 CAGAGCCTCCCTCCTCCT 59.304 66.667 0.00 0.00 41.74 3.69
646 689 3.767044 GAGCCTCCCTCCTCCTCCC 62.767 73.684 0.00 0.00 34.35 4.30
675 718 4.207281 TCCGCCGCATCCTCGAAG 62.207 66.667 0.00 0.00 0.00 3.79
679 722 2.956964 CCGCATCCTCGAAGTCGC 60.957 66.667 0.00 0.00 39.60 5.19
750 817 0.395036 CTCTCTCTCCTCTCCGGCAA 60.395 60.000 0.00 0.00 0.00 4.52
768 835 1.963338 AAGCGACCAGACTGCTTGC 60.963 57.895 2.15 2.15 46.46 4.01
1055 1143 2.659016 CCAGCAAGACGAGCAGGA 59.341 61.111 0.00 0.00 40.72 3.86
1108 1196 1.076995 TTCTCCGAGATCTCCCGCA 60.077 57.895 17.13 0.00 0.00 5.69
1173 1575 5.986004 TTTTTGTTCGTTTGTTTGTTGGT 57.014 30.435 0.00 0.00 0.00 3.67
1180 1583 0.173708 TTTGTTTGTTGGTGGACGGC 59.826 50.000 0.00 0.00 0.00 5.68
1306 1709 1.229984 AGGGGGAAGACAAGGGGAG 60.230 63.158 0.00 0.00 0.00 4.30
1374 1777 0.876342 GGATAAGCTGGAGAACGCCG 60.876 60.000 0.00 0.00 0.00 6.46
1408 1811 2.768344 GGGCCAGGCTAGCACCTA 60.768 66.667 18.24 0.00 38.26 3.08
1424 1827 4.124943 TACCTCGCCGCTCCCTCT 62.125 66.667 0.00 0.00 0.00 3.69
1434 1837 0.951040 CGCTCCCTCTCGCTGTTTTT 60.951 55.000 0.00 0.00 0.00 1.94
1457 1860 1.203052 CAATGCCAGTGAATGTGGTCC 59.797 52.381 0.00 0.00 37.40 4.46
1484 1887 5.234116 GGATTGGTGAAATGTTGTTTGTGAC 59.766 40.000 0.00 0.00 0.00 3.67
1491 1894 2.254918 TGTTGTTTGTGACTTGCGTG 57.745 45.000 0.00 0.00 0.00 5.34
1589 1992 1.919816 TGCATGGAGGAGTGGCTCA 60.920 57.895 0.00 0.00 31.08 4.26
1642 2045 7.840342 TGATCTACATTTTCTCTTTCTGCTC 57.160 36.000 0.00 0.00 0.00 4.26
1653 2056 2.238144 TCTTTCTGCTCTGATTCCCTGG 59.762 50.000 0.00 0.00 0.00 4.45
1709 2112 5.643348 TGTGTATACTGAATTGCTGAACCTG 59.357 40.000 4.17 0.00 0.00 4.00
1734 2137 4.898607 TGGAACAGTGGAAGCACC 57.101 55.556 0.00 0.00 39.54 5.01
1735 2138 2.230664 TGGAACAGTGGAAGCACCT 58.769 52.632 0.00 0.00 39.86 4.00
1736 2139 1.429930 TGGAACAGTGGAAGCACCTA 58.570 50.000 0.00 0.00 39.86 3.08
1737 2140 1.985159 TGGAACAGTGGAAGCACCTAT 59.015 47.619 0.00 0.00 39.86 2.57
1738 2141 2.290260 TGGAACAGTGGAAGCACCTATG 60.290 50.000 0.00 3.38 39.86 2.23
1739 2142 2.027192 GGAACAGTGGAAGCACCTATGA 60.027 50.000 0.00 0.00 39.86 2.15
1740 2143 3.265791 GAACAGTGGAAGCACCTATGAG 58.734 50.000 0.00 0.00 39.86 2.90
1741 2144 2.260822 ACAGTGGAAGCACCTATGAGT 58.739 47.619 0.00 0.00 39.86 3.41
1758 2161 7.093988 ACCTATGAGTCTATGATCAAATCCTCG 60.094 40.741 0.00 0.00 0.00 4.63
1841 2245 9.912634 TGAATTAAAAATAAGAGAAAGCTGGTG 57.087 29.630 0.00 0.00 0.00 4.17
1856 2260 5.758790 AGCTGGTGATATGATGCTATTCT 57.241 39.130 0.00 0.00 0.00 2.40
1873 2277 5.696270 GCTATTCTTTTCCCTTTGTTGGTTG 59.304 40.000 0.00 0.00 0.00 3.77
1874 2278 3.535280 TCTTTTCCCTTTGTTGGTTGC 57.465 42.857 0.00 0.00 0.00 4.17
1887 2292 8.519526 CCTTTGTTGGTTGCAGAATTAGTATAA 58.480 33.333 0.00 0.00 0.00 0.98
1892 2297 9.669353 GTTGGTTGCAGAATTAGTATAATGATG 57.331 33.333 0.00 0.00 0.00 3.07
1895 2300 8.507249 GGTTGCAGAATTAGTATAATGATGTCC 58.493 37.037 0.00 0.00 0.00 4.02
1900 2305 8.099537 CAGAATTAGTATAATGATGTCCTGCCT 58.900 37.037 0.00 0.00 0.00 4.75
1905 2310 1.843368 AATGATGTCCTGCCTGTTGG 58.157 50.000 0.00 0.00 0.00 3.77
1906 2311 0.700564 ATGATGTCCTGCCTGTTGGT 59.299 50.000 0.00 0.00 35.27 3.67
1920 2325 3.694566 CCTGTTGGTAGGTTAATCCTTGC 59.305 47.826 2.53 0.00 45.67 4.01
1932 2337 6.040166 AGGTTAATCCTTGCATTCAGCTTATG 59.960 38.462 0.00 1.92 45.67 1.90
1939 2344 4.642445 TGCATTCAGCTTATGGTCAATG 57.358 40.909 7.50 0.85 45.94 2.82
1947 2352 6.124340 TCAGCTTATGGTCAATGTGAATGAT 58.876 36.000 0.00 0.00 0.00 2.45
1948 2353 6.038936 TCAGCTTATGGTCAATGTGAATGATG 59.961 38.462 0.00 0.00 0.00 3.07
1964 2369 2.212652 TGATGCGCCATTAACTAGCTG 58.787 47.619 4.18 0.00 0.00 4.24
1966 2371 2.107950 TGCGCCATTAACTAGCTGTT 57.892 45.000 4.18 1.32 42.31 3.16
1967 2372 2.432444 TGCGCCATTAACTAGCTGTTT 58.568 42.857 4.18 0.00 39.89 2.83
1971 2376 4.970003 GCGCCATTAACTAGCTGTTTTATG 59.030 41.667 0.00 6.66 39.89 1.90
2007 2415 6.238869 GGGATTCTAAAAGCATCACTTCATCC 60.239 42.308 0.00 0.00 37.75 3.51
2009 2417 6.748333 TTCTAAAAGCATCACTTCATCCAG 57.252 37.500 0.00 0.00 37.75 3.86
2014 2422 1.293924 CATCACTTCATCCAGACGCC 58.706 55.000 0.00 0.00 0.00 5.68
2021 2429 0.459585 TCATCCAGACGCCGCTTTAC 60.460 55.000 0.00 0.00 0.00 2.01
2026 2438 0.865769 CAGACGCCGCTTTACTGTTT 59.134 50.000 0.00 0.00 0.00 2.83
2032 2444 4.862350 ACGCCGCTTTACTGTTTTAAATT 58.138 34.783 0.00 0.00 0.00 1.82
2059 2471 2.224549 TCTGTTAATGGGTCGTTTTGCG 59.775 45.455 0.00 0.00 43.01 4.85
2064 2476 1.104577 ATGGGTCGTTTTGCGGTGTT 61.105 50.000 0.00 0.00 41.72 3.32
2074 2486 5.049612 TCGTTTTGCGGTGTTAATATGTCAA 60.050 36.000 0.00 0.00 41.72 3.18
2079 2491 7.618502 TTGCGGTGTTAATATGTCAAGTTAT 57.381 32.000 0.00 0.00 0.00 1.89
2094 2506 7.414436 TGTCAAGTTATCTTTTGTGTTACTGC 58.586 34.615 0.00 0.00 0.00 4.40
2095 2507 7.282224 TGTCAAGTTATCTTTTGTGTTACTGCT 59.718 33.333 0.00 0.00 0.00 4.24
2096 2508 7.587757 GTCAAGTTATCTTTTGTGTTACTGCTG 59.412 37.037 0.00 0.00 0.00 4.41
2097 2509 6.560253 AGTTATCTTTTGTGTTACTGCTGG 57.440 37.500 0.00 0.00 0.00 4.85
2098 2510 6.296026 AGTTATCTTTTGTGTTACTGCTGGA 58.704 36.000 0.00 0.00 0.00 3.86
2099 2511 6.204882 AGTTATCTTTTGTGTTACTGCTGGAC 59.795 38.462 0.00 0.00 0.00 4.02
2100 2512 3.879998 TCTTTTGTGTTACTGCTGGACA 58.120 40.909 0.00 0.00 0.00 4.02
2107 2519 6.252967 TGTGTTACTGCTGGACATTTAATG 57.747 37.500 3.07 3.07 0.00 1.90
2124 2536 7.879160 ACATTTAATGATGTTTTGAGTGCCAAT 59.121 29.630 12.28 0.00 36.92 3.16
2135 2547 3.164268 TGAGTGCCAATAAACCTGCAAT 58.836 40.909 0.00 0.00 35.16 3.56
2136 2548 3.577848 TGAGTGCCAATAAACCTGCAATT 59.422 39.130 0.00 0.00 35.16 2.32
2138 2550 5.421693 TGAGTGCCAATAAACCTGCAATTAT 59.578 36.000 0.00 0.00 35.16 1.28
2139 2551 6.070881 TGAGTGCCAATAAACCTGCAATTATT 60.071 34.615 6.16 6.16 35.16 1.40
2140 2552 6.710278 AGTGCCAATAAACCTGCAATTATTT 58.290 32.000 8.36 0.91 35.16 1.40
2169 2586 8.877808 CTTTGCTTGAAAAAGGAACTCTAATT 57.122 30.769 0.00 0.00 38.49 1.40
2171 2588 8.647143 TTGCTTGAAAAAGGAACTCTAATTTG 57.353 30.769 0.00 0.00 38.49 2.32
2172 2589 8.006298 TGCTTGAAAAAGGAACTCTAATTTGA 57.994 30.769 0.00 0.00 38.49 2.69
2173 2590 8.641541 TGCTTGAAAAAGGAACTCTAATTTGAT 58.358 29.630 0.00 0.00 38.49 2.57
2238 2687 4.320788 GCTGAAACCATTCAACAAGGAGAG 60.321 45.833 0.00 0.00 44.64 3.20
2277 2726 5.782047 TCTGAAATAGCACCAACCATTTTG 58.218 37.500 0.00 0.00 0.00 2.44
2301 2750 6.906901 TGGAGGTGAACCCTAGAATTTAGTAT 59.093 38.462 0.00 0.00 46.51 2.12
2303 2752 8.931568 GGAGGTGAACCCTAGAATTTAGTATTA 58.068 37.037 0.00 0.00 46.51 0.98
2334 2785 6.464222 TCTTCTACTGTTCTACCCATTTGTG 58.536 40.000 0.00 0.00 0.00 3.33
2429 2880 2.210116 GAGCGTGTTGGAAAAGAGACA 58.790 47.619 0.00 0.00 0.00 3.41
2473 2924 7.944554 AGAGACTGGTATGGAAATTGAAAAAGA 59.055 33.333 0.00 0.00 0.00 2.52
2483 2934 6.609616 TGGAAATTGAAAAAGAAGGTACTGGT 59.390 34.615 0.00 0.00 40.86 4.00
2601 3052 6.313658 GTGGCTTCTGTTTTCACATTTTCTTT 59.686 34.615 0.00 0.00 30.39 2.52
2624 3075 4.142071 TGTGTGCTGGATTATCAGTCTCTC 60.142 45.833 0.00 0.00 37.12 3.20
2625 3076 4.099266 GTGTGCTGGATTATCAGTCTCTCT 59.901 45.833 0.00 0.00 37.12 3.10
2626 3077 4.099113 TGTGCTGGATTATCAGTCTCTCTG 59.901 45.833 0.00 0.00 44.85 3.35
2676 3127 8.706521 GGTCTTTTCTATACTAGGAACTGGAAT 58.293 37.037 0.00 0.00 40.33 3.01
2678 3129 8.925338 TCTTTTCTATACTAGGAACTGGAATCC 58.075 37.037 0.00 0.00 40.33 3.01
2696 3147 0.035152 CCCTGTCAAGCCACTATGCA 60.035 55.000 0.00 0.00 0.00 3.96
2744 3195 1.869767 CTTGTCGCTGAGCAGAAAACT 59.130 47.619 4.88 0.00 0.00 2.66
2799 3250 6.702282 GCAGCTATTTACTCTTAGTACCAAGG 59.298 42.308 1.06 0.00 28.93 3.61
2800 3251 7.417570 GCAGCTATTTACTCTTAGTACCAAGGA 60.418 40.741 1.06 0.00 28.93 3.36
2932 3383 4.506255 GGCTGCGGGGTAGGCATT 62.506 66.667 0.00 0.00 40.20 3.56
2936 3387 0.180406 CTGCGGGGTAGGCATTACTT 59.820 55.000 0.00 0.00 40.09 2.24
3066 3518 9.461312 AGCATGTGGTTATGAAACTTAAATAGA 57.539 29.630 0.00 0.00 35.81 1.98
3092 3573 5.050644 TGAACATGATTGCACATTCTGAC 57.949 39.130 0.00 0.00 0.00 3.51
3177 3698 7.311092 TCATTCCAGTTTTACTCCTGTAGAA 57.689 36.000 0.00 0.00 0.00 2.10
3184 3706 7.878127 CCAGTTTTACTCCTGTAGAATTCTTCA 59.122 37.037 14.36 13.81 0.00 3.02
3335 3861 3.107402 AGGCTAGAGACCATTCACTCA 57.893 47.619 0.00 0.00 35.83 3.41
3351 3877 1.478510 ACTCAGAGGGCGTTCATGTAG 59.521 52.381 1.53 0.00 0.00 2.74
3358 3884 0.036765 GGCGTTCATGTAGGTCCACA 60.037 55.000 0.00 0.00 0.00 4.17
3369 3895 9.448438 TTCATGTAGGTCCACATTATATAATGC 57.552 33.333 27.90 15.51 45.24 3.56
3503 4029 3.575256 TCTCTGCTGCCAACAAATCAAAT 59.425 39.130 0.00 0.00 0.00 2.32
3633 4159 3.363970 CGCTACAAGTTTTGCTACAGGTG 60.364 47.826 0.00 0.00 0.00 4.00
3634 4160 3.058224 GCTACAAGTTTTGCTACAGGTGG 60.058 47.826 0.00 0.00 0.00 4.61
3656 4182 7.877612 GGTGGACCATGAAAACAATCTATTTTT 59.122 33.333 0.00 0.00 35.64 1.94
3713 4240 9.715123 AAACTTAATTTTGCTTTTTGAAATCCG 57.285 25.926 0.00 0.00 0.00 4.18
3733 4260 2.482664 CGTAGGCATCTCAGATGTTGCT 60.483 50.000 16.28 0.00 35.46 3.91
3742 4269 4.248859 TCTCAGATGTTGCTGAAGCTTAC 58.751 43.478 0.00 0.00 43.75 2.34
3743 4270 3.999001 CTCAGATGTTGCTGAAGCTTACA 59.001 43.478 0.00 0.00 43.75 2.41
3965 4492 6.065374 TCCTCCTTGCTGTTGTTATTGTTAA 58.935 36.000 0.00 0.00 0.00 2.01
3966 4493 6.016610 TCCTCCTTGCTGTTGTTATTGTTAAC 60.017 38.462 0.00 0.00 38.56 2.01
3967 4494 6.079424 TCCTTGCTGTTGTTATTGTTAACC 57.921 37.500 2.48 0.00 37.49 2.85
4097 4624 4.558226 ATCAGTAATTGGCTGTGTCTCA 57.442 40.909 10.35 0.00 35.60 3.27
4193 4720 6.662414 TGCAATTGAGATAGAAGTTTACCG 57.338 37.500 10.34 0.00 0.00 4.02
4197 4724 7.064728 GCAATTGAGATAGAAGTTTACCGAAGT 59.935 37.037 10.34 0.00 0.00 3.01
4201 4728 1.792006 AGAAGTTTACCGAAGTGCCG 58.208 50.000 0.00 0.00 0.00 5.69
4207 4735 1.240256 TTACCGAAGTGCCGCATTTT 58.760 45.000 2.30 0.00 0.00 1.82
4307 4837 7.945134 AGGAGAACATATTATTGTGATTTGGC 58.055 34.615 0.00 0.00 0.00 4.52
4308 4838 7.560991 AGGAGAACATATTATTGTGATTTGGCA 59.439 33.333 0.00 0.00 0.00 4.92
4309 4839 7.649306 GGAGAACATATTATTGTGATTTGGCAC 59.351 37.037 0.00 0.00 39.22 5.01
4310 4840 8.065473 AGAACATATTATTGTGATTTGGCACA 57.935 30.769 0.00 0.00 46.26 4.57
4319 4849 4.847198 TGTGATTTGGCACATGAGATACT 58.153 39.130 0.00 0.00 43.35 2.12
4320 4850 5.988287 TGTGATTTGGCACATGAGATACTA 58.012 37.500 0.00 0.00 43.35 1.82
4321 4851 6.594744 TGTGATTTGGCACATGAGATACTAT 58.405 36.000 0.00 0.00 43.35 2.12
4322 4852 7.056006 TGTGATTTGGCACATGAGATACTATT 58.944 34.615 0.00 0.00 43.35 1.73
4323 4853 7.012610 TGTGATTTGGCACATGAGATACTATTG 59.987 37.037 0.00 0.00 43.35 1.90
4324 4854 7.227314 GTGATTTGGCACATGAGATACTATTGA 59.773 37.037 0.00 0.00 39.30 2.57
4325 4855 7.443272 TGATTTGGCACATGAGATACTATTGAG 59.557 37.037 0.00 0.00 39.30 3.02
4326 4856 6.484364 TTGGCACATGAGATACTATTGAGA 57.516 37.500 0.00 0.00 39.30 3.27
4327 4857 6.484364 TGGCACATGAGATACTATTGAGAA 57.516 37.500 0.00 0.00 0.00 2.87
4328 4858 6.888105 TGGCACATGAGATACTATTGAGAAA 58.112 36.000 0.00 0.00 0.00 2.52
4329 4859 6.988580 TGGCACATGAGATACTATTGAGAAAG 59.011 38.462 0.00 0.00 0.00 2.62
4330 4860 6.426328 GGCACATGAGATACTATTGAGAAAGG 59.574 42.308 0.00 0.00 0.00 3.11
4331 4861 7.212976 GCACATGAGATACTATTGAGAAAGGA 58.787 38.462 0.00 0.00 0.00 3.36
4332 4862 7.877097 GCACATGAGATACTATTGAGAAAGGAT 59.123 37.037 0.00 0.00 0.00 3.24
4354 4884 9.365906 AGGATAACATATTATTGTGATTTGGCA 57.634 29.630 0.00 0.00 30.77 4.92
4372 4902 4.630111 TGGCATGTTCTTTGATCAAAACC 58.370 39.130 20.82 12.05 0.00 3.27
4390 4920 0.808755 CCCGTTTACATTGACCTGGC 59.191 55.000 0.00 0.00 0.00 4.85
4410 4941 4.158949 TGGCATGATGATTTCTTGAAGTGG 59.841 41.667 0.00 0.00 32.55 4.00
4414 4945 3.507233 TGATGATTTCTTGAAGTGGGCAC 59.493 43.478 0.00 0.00 0.00 5.01
4455 4986 4.299586 TGTGTCATTAAGAGCCCATGAA 57.700 40.909 0.00 0.00 0.00 2.57
4472 5003 6.222389 CCCATGAACAAAATAAGTTGAGCAA 58.778 36.000 0.00 0.00 32.59 3.91
4486 5017 6.395426 AGTTGAGCAAAATCAGTCAAATCA 57.605 33.333 0.00 0.00 30.94 2.57
4487 5018 6.989659 AGTTGAGCAAAATCAGTCAAATCAT 58.010 32.000 0.00 0.00 30.94 2.45
4488 5019 7.088905 AGTTGAGCAAAATCAGTCAAATCATC 58.911 34.615 0.00 0.00 30.94 2.92
4489 5020 6.829229 TGAGCAAAATCAGTCAAATCATCT 57.171 33.333 0.00 0.00 0.00 2.90
4490 5021 6.849502 TGAGCAAAATCAGTCAAATCATCTC 58.150 36.000 0.00 0.00 0.00 2.75
4491 5022 6.657966 TGAGCAAAATCAGTCAAATCATCTCT 59.342 34.615 0.00 0.00 0.00 3.10
4492 5023 7.176165 TGAGCAAAATCAGTCAAATCATCTCTT 59.824 33.333 0.00 0.00 0.00 2.85
4493 5024 7.893658 AGCAAAATCAGTCAAATCATCTCTTT 58.106 30.769 0.00 0.00 0.00 2.52
4494 5025 8.027771 AGCAAAATCAGTCAAATCATCTCTTTC 58.972 33.333 0.00 0.00 0.00 2.62
4495 5026 7.275123 GCAAAATCAGTCAAATCATCTCTTTCC 59.725 37.037 0.00 0.00 0.00 3.13
4496 5027 8.301720 CAAAATCAGTCAAATCATCTCTTTCCA 58.698 33.333 0.00 0.00 0.00 3.53
4497 5028 8.413309 AAATCAGTCAAATCATCTCTTTCCAA 57.587 30.769 0.00 0.00 0.00 3.53
4498 5029 7.627298 ATCAGTCAAATCATCTCTTTCCAAG 57.373 36.000 0.00 0.00 0.00 3.61
4499 5030 6.772605 TCAGTCAAATCATCTCTTTCCAAGA 58.227 36.000 0.00 0.00 35.87 3.02
4500 5031 7.400439 TCAGTCAAATCATCTCTTTCCAAGAT 58.600 34.615 0.00 0.00 36.82 2.40
4501 5032 7.886970 TCAGTCAAATCATCTCTTTCCAAGATT 59.113 33.333 0.00 0.00 36.82 2.40
4502 5033 8.182881 CAGTCAAATCATCTCTTTCCAAGATTC 58.817 37.037 0.00 0.00 36.82 2.52
4503 5034 8.108364 AGTCAAATCATCTCTTTCCAAGATTCT 58.892 33.333 0.00 0.00 36.82 2.40
4504 5035 9.388506 GTCAAATCATCTCTTTCCAAGATTCTA 57.611 33.333 0.00 0.00 36.82 2.10
4505 5036 9.964354 TCAAATCATCTCTTTCCAAGATTCTAA 57.036 29.630 0.00 0.00 36.82 2.10
4634 5193 7.788026 ACAATTACTCCGGTTGTATCATCTTA 58.212 34.615 5.64 0.00 34.55 2.10
4724 5284 6.098409 TCCTTCAGATCACTATAGTTGGGAAC 59.902 42.308 1.56 0.00 0.00 3.62
4725 5285 5.515797 TCAGATCACTATAGTTGGGAACG 57.484 43.478 1.56 0.00 36.23 3.95
4726 5286 4.954202 TCAGATCACTATAGTTGGGAACGT 59.046 41.667 1.56 0.00 36.23 3.99
4752 5313 4.980573 TGGTACAAGTCTAAGCAACCAAT 58.019 39.130 0.00 0.00 32.81 3.16
4784 5345 3.842428 CAGCGAAAATCACAATCAAGACG 59.158 43.478 0.00 0.00 0.00 4.18
4799 5360 3.044986 CAAGACGTGCAAAATTCCAGTG 58.955 45.455 0.00 0.00 0.00 3.66
4810 5393 5.337009 GCAAAATTCCAGTGTGAATCCAGAT 60.337 40.000 7.14 0.00 33.91 2.90
4819 5402 3.941483 GTGTGAATCCAGATAGGGTTGTG 59.059 47.826 0.00 0.00 42.17 3.33
4828 5411 3.967326 CAGATAGGGTTGTGGAGTGGATA 59.033 47.826 0.00 0.00 0.00 2.59
4831 5414 3.136641 AGGGTTGTGGAGTGGATAGAT 57.863 47.619 0.00 0.00 0.00 1.98
4835 5418 4.324254 GGGTTGTGGAGTGGATAGATTTCA 60.324 45.833 0.00 0.00 0.00 2.69
4858 5441 6.268617 TCAGTAATCATAGTAATCAGGCTGCT 59.731 38.462 10.34 3.44 0.00 4.24
4870 5453 8.897752 AGTAATCAGGCTGCTAATAAAGAAAAG 58.102 33.333 10.34 0.00 0.00 2.27
4888 5472 4.778842 AAAGCGTATGTCATTAAGCTCG 57.221 40.909 8.99 0.00 36.15 5.03
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
15 16 2.653890 CTGTGTTGTTTTGCAGATCCG 58.346 47.619 0.00 0.00 0.00 4.18
35 36 6.365920 CAGCTTTGGTGAATGCAAATGTGC 62.366 45.833 0.00 0.00 41.41 4.57
89 95 1.888512 GAGTGGATTGCTTCCTTTGCA 59.111 47.619 7.63 0.00 45.68 4.08
90 96 1.888512 TGAGTGGATTGCTTCCTTTGC 59.111 47.619 7.63 0.00 45.68 3.68
182 188 5.499004 TTTTAACTGCAGACTCCTATGGT 57.501 39.130 23.35 0.00 0.00 3.55
230 239 2.227865 TGAATGGCTGCCGTTTTTAGTC 59.772 45.455 25.78 13.42 32.23 2.59
623 666 2.365370 AGGAGGGAGGCTCTGCTG 60.365 66.667 15.23 0.00 31.69 4.41
750 817 1.963338 GCAAGCAGTCTGGTCGCTT 60.963 57.895 7.72 0.00 46.57 4.68
1156 1245 2.918600 GTCCACCAACAAACAAACGAAC 59.081 45.455 0.00 0.00 0.00 3.95
1157 1246 2.414293 CGTCCACCAACAAACAAACGAA 60.414 45.455 0.00 0.00 0.00 3.85
1158 1247 1.130749 CGTCCACCAACAAACAAACGA 59.869 47.619 0.00 0.00 0.00 3.85
1159 1248 1.540407 CGTCCACCAACAAACAAACG 58.460 50.000 0.00 0.00 0.00 3.60
1170 1572 2.203877 AACCCTAGCCGTCCACCA 60.204 61.111 0.00 0.00 0.00 4.17
1173 1575 0.325296 ATCAGAACCCTAGCCGTCCA 60.325 55.000 0.00 0.00 0.00 4.02
1180 1583 4.063689 GCATCACATCATCAGAACCCTAG 58.936 47.826 0.00 0.00 0.00 3.02
1294 1697 2.239907 GGCTCATTACTCCCCTTGTCTT 59.760 50.000 0.00 0.00 0.00 3.01
1306 1709 1.759459 CTCCCCCTCCGGCTCATTAC 61.759 65.000 0.00 0.00 0.00 1.89
1424 1827 2.897780 GCATTGCCAAAAACAGCGA 58.102 47.368 0.00 0.00 0.00 4.93
1457 1860 5.759273 ACAAACAACATTTCACCAATCCATG 59.241 36.000 0.00 0.00 0.00 3.66
1491 1894 2.283173 CCCCTGCAGAACCCCAAC 60.283 66.667 17.39 0.00 0.00 3.77
1642 2045 2.025887 ACTAAGCAACCCAGGGAATCAG 60.026 50.000 14.54 3.81 0.00 2.90
1653 2056 5.898174 ACTAAAACCAAACACTAAGCAACC 58.102 37.500 0.00 0.00 0.00 3.77
1709 2112 2.472695 TCCACTGTTCCATGTACTGC 57.527 50.000 0.00 0.00 0.00 4.40
1734 2137 7.121907 TCCGAGGATTTGATCATAGACTCATAG 59.878 40.741 15.22 7.42 0.00 2.23
1735 2138 6.948309 TCCGAGGATTTGATCATAGACTCATA 59.052 38.462 15.22 4.89 0.00 2.15
1736 2139 5.777223 TCCGAGGATTTGATCATAGACTCAT 59.223 40.000 15.22 0.00 0.00 2.90
1737 2140 5.140454 TCCGAGGATTTGATCATAGACTCA 58.860 41.667 15.22 1.04 0.00 3.41
1738 2141 5.713792 TCCGAGGATTTGATCATAGACTC 57.286 43.478 0.00 3.28 0.00 3.36
1739 2142 5.777223 TCATCCGAGGATTTGATCATAGACT 59.223 40.000 1.12 0.00 31.62 3.24
1740 2143 6.030548 TCATCCGAGGATTTGATCATAGAC 57.969 41.667 1.12 0.00 31.62 2.59
1741 2144 6.864151 ATCATCCGAGGATTTGATCATAGA 57.136 37.500 1.12 0.00 31.62 1.98
1758 2161 8.887717 GTGGACAGCTAATTATTCATATCATCC 58.112 37.037 0.00 0.00 0.00 3.51
1825 2229 6.654161 GCATCATATCACCAGCTTTCTCTTAT 59.346 38.462 0.00 0.00 0.00 1.73
1827 2231 4.820716 GCATCATATCACCAGCTTTCTCTT 59.179 41.667 0.00 0.00 0.00 2.85
1829 2233 4.387598 AGCATCATATCACCAGCTTTCTC 58.612 43.478 0.00 0.00 0.00 2.87
1831 2235 6.654161 AGAATAGCATCATATCACCAGCTTTC 59.346 38.462 0.00 0.00 33.83 2.62
1832 2236 6.540995 AGAATAGCATCATATCACCAGCTTT 58.459 36.000 0.00 0.00 33.83 3.51
1833 2237 6.124316 AGAATAGCATCATATCACCAGCTT 57.876 37.500 0.00 0.00 33.83 3.74
1836 2240 7.094463 GGGAAAAGAATAGCATCATATCACCAG 60.094 40.741 0.00 0.00 0.00 4.00
1837 2241 6.716628 GGGAAAAGAATAGCATCATATCACCA 59.283 38.462 0.00 0.00 0.00 4.17
1838 2242 6.944862 AGGGAAAAGAATAGCATCATATCACC 59.055 38.462 0.00 0.00 0.00 4.02
1839 2243 7.992754 AGGGAAAAGAATAGCATCATATCAC 57.007 36.000 0.00 0.00 0.00 3.06
1840 2244 8.853126 CAAAGGGAAAAGAATAGCATCATATCA 58.147 33.333 0.00 0.00 0.00 2.15
1841 2245 8.854117 ACAAAGGGAAAAGAATAGCATCATATC 58.146 33.333 0.00 0.00 0.00 1.63
1844 2248 7.325694 CAACAAAGGGAAAAGAATAGCATCAT 58.674 34.615 0.00 0.00 0.00 2.45
1856 2260 2.834549 TCTGCAACCAACAAAGGGAAAA 59.165 40.909 0.00 0.00 0.00 2.29
1873 2277 7.148340 GGCAGGACATCATTATACTAATTCTGC 60.148 40.741 0.00 0.00 40.11 4.26
1874 2278 8.099537 AGGCAGGACATCATTATACTAATTCTG 58.900 37.037 0.00 0.00 0.00 3.02
1887 2292 0.700564 ACCAACAGGCAGGACATCAT 59.299 50.000 0.00 0.00 0.00 2.45
1888 2293 1.278985 CTACCAACAGGCAGGACATCA 59.721 52.381 0.00 0.00 0.00 3.07
1892 2297 0.400594 AACCTACCAACAGGCAGGAC 59.599 55.000 7.77 0.00 38.09 3.85
1895 2300 3.279434 GGATTAACCTACCAACAGGCAG 58.721 50.000 0.00 0.00 39.53 4.85
1905 2310 4.884164 AGCTGAATGCAAGGATTAACCTAC 59.116 41.667 0.00 0.00 45.82 3.18
1906 2311 5.116084 AGCTGAATGCAAGGATTAACCTA 57.884 39.130 0.00 0.00 45.82 3.08
1920 2325 5.823209 TCACATTGACCATAAGCTGAATG 57.177 39.130 0.00 0.00 0.00 2.67
1932 2337 1.534595 GGCGCATCATTCACATTGACC 60.535 52.381 10.83 0.00 0.00 4.02
1939 2344 3.698029 AGTTAATGGCGCATCATTCAC 57.302 42.857 14.06 13.39 38.24 3.18
1947 2352 2.107950 AACAGCTAGTTAATGGCGCA 57.892 45.000 10.83 0.00 41.06 6.09
1948 2353 3.487563 AAAACAGCTAGTTAATGGCGC 57.512 42.857 0.00 0.00 40.26 6.53
1964 2369 7.945134 AGAATCCCATCAATGCTACATAAAAC 58.055 34.615 0.00 0.00 0.00 2.43
1966 2371 9.639563 TTTAGAATCCCATCAATGCTACATAAA 57.360 29.630 0.00 0.00 0.00 1.40
1967 2372 9.639563 TTTTAGAATCCCATCAATGCTACATAA 57.360 29.630 0.00 0.00 0.00 1.90
1971 2376 6.039717 TGCTTTTAGAATCCCATCAATGCTAC 59.960 38.462 0.00 0.00 0.00 3.58
1978 2384 5.759059 AGTGATGCTTTTAGAATCCCATCA 58.241 37.500 0.00 0.00 37.37 3.07
2007 2415 0.865769 AAACAGTAAAGCGGCGTCTG 59.134 50.000 9.37 11.83 0.00 3.51
2009 2417 3.524763 TTAAAACAGTAAAGCGGCGTC 57.475 42.857 9.37 0.13 0.00 5.19
2032 2444 8.185505 GCAAAACGACCCATTAACAGAATTATA 58.814 33.333 0.00 0.00 0.00 0.98
2074 2486 6.204882 GTCCAGCAGTAACACAAAAGATAACT 59.795 38.462 0.00 0.00 0.00 2.24
2079 2491 3.879998 TGTCCAGCAGTAACACAAAAGA 58.120 40.909 0.00 0.00 0.00 2.52
2091 2503 7.092079 TCAAAACATCATTAAATGTCCAGCAG 58.908 34.615 0.00 0.00 38.92 4.24
2093 2505 7.062605 CACTCAAAACATCATTAAATGTCCAGC 59.937 37.037 0.00 0.00 38.92 4.85
2094 2506 7.062605 GCACTCAAAACATCATTAAATGTCCAG 59.937 37.037 0.00 0.00 38.92 3.86
2095 2507 6.867816 GCACTCAAAACATCATTAAATGTCCA 59.132 34.615 0.00 0.00 38.92 4.02
2096 2508 6.311200 GGCACTCAAAACATCATTAAATGTCC 59.689 38.462 0.00 0.00 38.92 4.02
2097 2509 6.867816 TGGCACTCAAAACATCATTAAATGTC 59.132 34.615 0.00 0.00 38.92 3.06
2098 2510 6.757237 TGGCACTCAAAACATCATTAAATGT 58.243 32.000 0.00 0.00 41.60 2.71
2099 2511 7.655236 TTGGCACTCAAAACATCATTAAATG 57.345 32.000 0.00 0.00 31.46 2.32
2100 2512 9.941325 TTATTGGCACTCAAAACATCATTAAAT 57.059 25.926 0.00 0.00 39.05 1.40
2107 2519 5.634859 CAGGTTTATTGGCACTCAAAACATC 59.365 40.000 12.40 1.17 39.05 3.06
2124 2536 7.039082 AGCAAAGGAGAAATAATTGCAGGTTTA 60.039 33.333 10.89 0.00 46.59 2.01
2168 2585 8.792633 CCAATCTAAGAAAGTAACCACATCAAA 58.207 33.333 0.00 0.00 0.00 2.69
2169 2586 8.160765 TCCAATCTAAGAAAGTAACCACATCAA 58.839 33.333 0.00 0.00 0.00 2.57
2171 2588 8.561738 TTCCAATCTAAGAAAGTAACCACATC 57.438 34.615 0.00 0.00 0.00 3.06
2172 2589 8.793592 GTTTCCAATCTAAGAAAGTAACCACAT 58.206 33.333 0.00 0.00 32.86 3.21
2173 2590 7.996644 AGTTTCCAATCTAAGAAAGTAACCACA 59.003 33.333 0.00 0.00 34.62 4.17
2362 2813 1.507140 TGACTTCCCTGTCTGTGGTT 58.493 50.000 0.00 0.00 37.79 3.67
2429 2880 6.598457 CAGTCTCTTCAATGATCAACTCCATT 59.402 38.462 0.00 0.00 33.66 3.16
2473 2924 1.697982 GGTCACCTTCACCAGTACCTT 59.302 52.381 0.00 0.00 33.63 3.50
2483 2934 1.211703 TCTGTTTGCTGGTCACCTTCA 59.788 47.619 0.00 0.00 0.00 3.02
2601 3052 3.771479 AGAGACTGATAATCCAGCACACA 59.229 43.478 0.00 0.00 37.68 3.72
2624 3075 5.428184 AATTAAGAAGGGTGGAGAGTCAG 57.572 43.478 0.00 0.00 0.00 3.51
2625 3076 5.073144 ACAAATTAAGAAGGGTGGAGAGTCA 59.927 40.000 0.00 0.00 0.00 3.41
2626 3077 5.412904 CACAAATTAAGAAGGGTGGAGAGTC 59.587 44.000 0.00 0.00 0.00 3.36
2627 3078 5.316987 CACAAATTAAGAAGGGTGGAGAGT 58.683 41.667 0.00 0.00 0.00 3.24
2633 3084 6.405278 AAAGACCACAAATTAAGAAGGGTG 57.595 37.500 0.00 0.00 0.00 4.61
2676 3127 0.253044 GCATAGTGGCTTGACAGGGA 59.747 55.000 0.00 0.00 0.00 4.20
2678 3129 1.089920 GTGCATAGTGGCTTGACAGG 58.910 55.000 0.00 0.00 34.04 4.00
2799 3250 1.135094 TCTGGCCCATCTTCCTCATC 58.865 55.000 0.00 0.00 0.00 2.92
2800 3251 0.842635 GTCTGGCCCATCTTCCTCAT 59.157 55.000 0.00 0.00 0.00 2.90
2932 3383 7.883391 TTTGAATTTACAGGGTGAACAAGTA 57.117 32.000 0.00 0.00 0.00 2.24
3066 3518 5.867174 CAGAATGTGCAATCATGTTCATTGT 59.133 36.000 7.27 0.00 34.63 2.71
3092 3573 6.219417 AGTTTCATATCTCTGTCAGGTCAG 57.781 41.667 0.00 0.00 36.85 3.51
3132 3653 3.153919 AGCTTATTGGCGGACAGAAAAA 58.846 40.909 0.00 0.00 37.29 1.94
3143 3664 4.725790 AAACTGGAATGAGCTTATTGGC 57.274 40.909 8.68 0.00 0.00 4.52
3335 3861 0.824759 GACCTACATGAACGCCCTCT 59.175 55.000 0.00 0.00 0.00 3.69
3351 3877 8.396272 AGAAACAGCATTATATAATGTGGACC 57.604 34.615 28.02 15.83 43.72 4.46
3404 3930 1.261480 ATCTCTGCAGGACGACAGTT 58.739 50.000 15.13 0.00 35.37 3.16
3408 3934 1.067565 TGACAATCTCTGCAGGACGAC 60.068 52.381 15.13 6.46 0.00 4.34
3503 4029 4.881920 TCACATCACTTTCATCTTCGTCA 58.118 39.130 0.00 0.00 0.00 4.35
3659 4185 0.593128 AACATTCAAGTGCACGAGGC 59.407 50.000 12.01 0.00 45.13 4.70
3700 4226 5.123820 TGAGATGCCTACGGATTTCAAAAAG 59.876 40.000 0.00 0.00 0.00 2.27
3706 4233 3.735237 TCTGAGATGCCTACGGATTTC 57.265 47.619 0.00 0.00 0.00 2.17
3713 4240 2.871022 CAGCAACATCTGAGATGCCTAC 59.129 50.000 21.62 9.39 39.59 3.18
3742 4269 1.004185 GCATTCTGTATCGCTGCTGTG 60.004 52.381 0.00 0.00 0.00 3.66
3743 4270 1.134580 AGCATTCTGTATCGCTGCTGT 60.135 47.619 0.00 0.00 41.38 4.40
3790 4317 0.900182 TCTCCTGCACCGACTGATGT 60.900 55.000 0.00 0.00 0.00 3.06
3833 4360 1.616865 ACTCGTCTGGTCGGATTTCAA 59.383 47.619 0.00 0.00 0.00 2.69
3947 4474 5.361285 AGGTGGTTAACAATAACAACAGCAA 59.639 36.000 8.10 0.00 44.54 3.91
3948 4475 4.890581 AGGTGGTTAACAATAACAACAGCA 59.109 37.500 8.10 0.00 44.54 4.41
3949 4476 5.240844 AGAGGTGGTTAACAATAACAACAGC 59.759 40.000 8.10 3.39 44.54 4.40
3965 4492 4.141251 ACAAAATGTACAGGAAGAGGTGGT 60.141 41.667 0.33 0.00 0.00 4.16
3966 4493 4.216257 CACAAAATGTACAGGAAGAGGTGG 59.784 45.833 0.33 0.00 0.00 4.61
3967 4494 4.821805 ACACAAAATGTACAGGAAGAGGTG 59.178 41.667 0.33 6.04 40.88 4.00
4097 4624 4.020396 TGCCATGTGCCAAGAAATACAAAT 60.020 37.500 4.07 0.00 40.16 2.32
4193 4720 4.728534 TGTAATACAAAATGCGGCACTTC 58.271 39.130 4.03 0.00 0.00 3.01
4247 4777 6.656314 ATCTCACGTGCGACAAAATAAATA 57.344 33.333 10.96 0.00 0.00 1.40
4257 4787 3.948851 TCAATAGTATCTCACGTGCGAC 58.051 45.455 10.96 5.68 0.00 5.19
4299 4829 7.281841 TCAATAGTATCTCATGTGCCAAATCA 58.718 34.615 0.00 0.00 0.00 2.57
4306 4836 7.212976 TCCTTTCTCAATAGTATCTCATGTGC 58.787 38.462 0.00 0.00 0.00 4.57
4328 4858 9.365906 TGCCAAATCACAATAATATGTTATCCT 57.634 29.630 0.00 0.00 30.28 3.24
4333 4863 9.316730 GAACATGCCAAATCACAATAATATGTT 57.683 29.630 0.00 0.00 37.63 2.71
4334 4864 8.698210 AGAACATGCCAAATCACAATAATATGT 58.302 29.630 0.00 0.00 0.00 2.29
4335 4865 9.537192 AAGAACATGCCAAATCACAATAATATG 57.463 29.630 0.00 0.00 0.00 1.78
4337 4867 9.368674 CAAAGAACATGCCAAATCACAATAATA 57.631 29.630 0.00 0.00 0.00 0.98
4338 4868 8.095792 TCAAAGAACATGCCAAATCACAATAAT 58.904 29.630 0.00 0.00 0.00 1.28
4339 4869 7.440198 TCAAAGAACATGCCAAATCACAATAA 58.560 30.769 0.00 0.00 0.00 1.40
4340 4870 6.990798 TCAAAGAACATGCCAAATCACAATA 58.009 32.000 0.00 0.00 0.00 1.90
4341 4871 5.856156 TCAAAGAACATGCCAAATCACAAT 58.144 33.333 0.00 0.00 0.00 2.71
4342 4872 5.273674 TCAAAGAACATGCCAAATCACAA 57.726 34.783 0.00 0.00 0.00 3.33
4343 4873 4.933505 TCAAAGAACATGCCAAATCACA 57.066 36.364 0.00 0.00 0.00 3.58
4344 4874 5.472148 TGATCAAAGAACATGCCAAATCAC 58.528 37.500 0.00 0.00 0.00 3.06
4345 4875 5.725325 TGATCAAAGAACATGCCAAATCA 57.275 34.783 0.00 0.00 0.00 2.57
4346 4876 7.293018 GTTTTGATCAAAGAACATGCCAAATC 58.707 34.615 19.64 0.00 0.00 2.17
4347 4877 6.205270 GGTTTTGATCAAAGAACATGCCAAAT 59.795 34.615 19.64 0.00 0.00 2.32
4348 4878 5.526846 GGTTTTGATCAAAGAACATGCCAAA 59.473 36.000 19.64 0.00 0.00 3.28
4349 4879 5.055812 GGTTTTGATCAAAGAACATGCCAA 58.944 37.500 19.64 0.00 0.00 4.52
4350 4880 4.502950 GGGTTTTGATCAAAGAACATGCCA 60.503 41.667 19.64 0.43 0.00 4.92
4351 4881 3.996363 GGGTTTTGATCAAAGAACATGCC 59.004 43.478 19.64 10.02 0.00 4.40
4352 4882 3.674753 CGGGTTTTGATCAAAGAACATGC 59.325 43.478 19.64 5.39 0.00 4.06
4353 4883 4.870363 ACGGGTTTTGATCAAAGAACATG 58.130 39.130 19.64 13.94 0.00 3.21
4354 4884 5.529581 AACGGGTTTTGATCAAAGAACAT 57.470 34.783 19.64 5.87 0.00 2.71
4372 4902 1.529226 TGCCAGGTCAATGTAAACGG 58.471 50.000 0.00 0.00 0.00 4.44
4390 4920 4.158949 TGCCCACTTCAAGAAATCATCATG 59.841 41.667 0.00 0.00 0.00 3.07
4439 4970 8.253113 ACTTATTTTGTTCATGGGCTCTTAATG 58.747 33.333 0.00 0.00 0.00 1.90
4455 4986 8.196771 TGACTGATTTTGCTCAACTTATTTTGT 58.803 29.630 0.00 0.00 0.00 2.83
4472 5003 8.413309 TTGGAAAGAGATGATTTGACTGATTT 57.587 30.769 0.00 0.00 0.00 2.17
4542 5101 1.066002 CATCAACATTCGATGCCACCC 59.934 52.381 0.00 0.00 34.32 4.61
4634 5193 7.093024 GGCCTACAATATGTATATGTACCCAGT 60.093 40.741 0.00 0.00 31.66 4.00
4701 5261 5.980116 CGTTCCCAACTATAGTGATCTGAAG 59.020 44.000 6.06 0.00 0.00 3.02
4724 5284 6.401796 GGTTGCTTAGACTTGTACCATTTACG 60.402 42.308 0.00 0.00 0.00 3.18
4725 5285 6.428771 TGGTTGCTTAGACTTGTACCATTTAC 59.571 38.462 0.00 0.00 29.78 2.01
4726 5286 6.535540 TGGTTGCTTAGACTTGTACCATTTA 58.464 36.000 0.00 0.00 29.78 1.40
4752 5313 4.998033 TGTGATTTTCGCTGTATGTTACCA 59.002 37.500 0.00 0.00 0.00 3.25
4759 5320 6.546395 GTCTTGATTGTGATTTTCGCTGTAT 58.454 36.000 0.00 0.00 0.00 2.29
4784 5345 3.989817 GGATTCACACTGGAATTTTGCAC 59.010 43.478 0.00 0.00 37.61 4.57
4799 5360 3.199946 TCCACAACCCTATCTGGATTCAC 59.800 47.826 0.00 0.00 38.35 3.18
4810 5393 3.769189 TCTATCCACTCCACAACCCTA 57.231 47.619 0.00 0.00 0.00 3.53
4819 5402 9.868277 CTATGATTACTGAAATCTATCCACTCC 57.132 37.037 0.02 0.00 43.83 3.85
4828 5411 9.717942 GCCTGATTACTATGATTACTGAAATCT 57.282 33.333 0.02 0.00 43.83 2.40
4831 5414 7.442364 GCAGCCTGATTACTATGATTACTGAAA 59.558 37.037 0.00 0.00 0.00 2.69
4835 5418 6.678568 AGCAGCCTGATTACTATGATTACT 57.321 37.500 0.00 0.00 0.00 2.24
4870 5453 1.858458 TGCGAGCTTAATGACATACGC 59.142 47.619 0.00 0.00 43.98 4.42
4888 5472 5.524511 TGTTGACTTGATAATACACGTGC 57.475 39.130 17.22 0.00 0.00 5.34


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.