Multiple sequence alignment - TraesCS4B01G067400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G067400 chr4B 100.000 2987 0 0 1 2987 60086840 60083854 0.000000e+00 5517.0
1 TraesCS4B01G067400 chr4B 89.369 301 26 4 171 465 506916233 506915933 1.010000e-99 374.0
2 TraesCS4B01G067400 chr4D 87.972 1721 68 46 589 2262 40956556 40954928 0.000000e+00 1903.0
3 TraesCS4B01G067400 chr4D 90.909 726 25 23 2289 2987 40954852 40954141 0.000000e+00 937.0
4 TraesCS4B01G067400 chr4D 89.776 313 27 3 172 479 499482562 499482250 2.160000e-106 396.0
5 TraesCS4B01G067400 chr4D 90.476 126 10 2 4 128 248918430 248918306 6.620000e-37 165.0
6 TraesCS4B01G067400 chr4D 94.118 51 3 0 72 122 97765330 97765380 8.880000e-11 78.7
7 TraesCS4B01G067400 chr4A 87.380 1672 82 60 589 2218 558648424 558650008 0.000000e+00 1799.0
8 TraesCS4B01G067400 chr4A 86.980 745 37 21 2257 2987 558650010 558650708 0.000000e+00 784.0
9 TraesCS4B01G067400 chr3A 89.103 312 27 5 171 476 66359241 66359551 6.040000e-102 381.0
10 TraesCS4B01G067400 chr3A 81.395 129 12 7 1 122 679689001 679689124 8.810000e-16 95.3
11 TraesCS4B01G067400 chr2B 89.769 303 24 5 171 467 67066615 67066916 6.040000e-102 381.0
12 TraesCS4B01G067400 chr7A 88.746 311 30 3 169 474 452751135 452751445 2.810000e-100 375.0
13 TraesCS4B01G067400 chr7A 88.462 312 31 3 171 477 486173325 486173014 3.640000e-99 372.0
14 TraesCS4B01G067400 chr3D 88.782 312 28 5 170 475 123312988 123313298 2.810000e-100 375.0
15 TraesCS4B01G067400 chr3D 88.571 315 26 8 170 476 428897220 428897532 1.010000e-99 374.0
16 TraesCS4B01G067400 chr5B 87.975 316 30 6 172 480 687319153 687318839 1.690000e-97 366.0
17 TraesCS4B01G067400 chr5B 91.111 90 8 0 1072 1161 134309003 134309092 4.040000e-24 122.0
18 TraesCS4B01G067400 chr5B 90.217 92 9 0 1070 1161 382569412 382569503 1.450000e-23 121.0
19 TraesCS4B01G067400 chr7B 94.382 178 10 0 1439 1616 467542471 467542648 1.050000e-69 274.0
20 TraesCS4B01G067400 chr7B 92.000 125 8 2 1 124 710736348 710736471 1.100000e-39 174.0
21 TraesCS4B01G067400 chr6D 90.323 124 10 1 1 122 141274280 141274403 8.570000e-36 161.0
22 TraesCS4B01G067400 chr7D 92.135 89 7 0 1072 1160 427131745 427131657 3.130000e-25 126.0
23 TraesCS4B01G067400 chr7D 84.615 65 6 4 59 122 19331337 19331398 8.940000e-06 62.1
24 TraesCS4B01G067400 chr1B 89.011 91 9 1 1 90 522768911 522768821 8.750000e-21 111.0
25 TraesCS4B01G067400 chr3B 95.833 48 2 0 75 122 177496823 177496776 8.880000e-11 78.7
26 TraesCS4B01G067400 chr3B 87.500 56 4 3 69 122 598049835 598049889 8.940000e-06 62.1
27 TraesCS4B01G067400 chr6A 93.878 49 3 0 474 522 426098275 426098323 1.150000e-09 75.0
28 TraesCS4B01G067400 chr6A 90.385 52 1 4 73 122 509578388 509578339 6.910000e-07 65.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G067400 chr4B 60083854 60086840 2986 True 5517.0 5517 100.0000 1 2987 1 chr4B.!!$R1 2986
1 TraesCS4B01G067400 chr4D 40954141 40956556 2415 True 1420.0 1903 89.4405 589 2987 2 chr4D.!!$R3 2398
2 TraesCS4B01G067400 chr4A 558648424 558650708 2284 False 1291.5 1799 87.1800 589 2987 2 chr4A.!!$F1 2398

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
575 576 0.034896 TGTCTCTTTCAGGGCCGAAC 59.965 55.0 9.75 1.52 0.0 3.95 F
1396 1444 0.034616 CATCCCTGCCTCGATTCCTC 59.965 60.0 0.00 0.00 0.0 3.71 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1782 1834 0.379669 CAGCCGGTGAATGAGATTGC 59.620 55.0 1.90 0.0 0.0 3.56 R
2640 2792 0.315869 CGAGTTCACGTGCACAAACC 60.316 55.0 20.25 10.3 0.0 3.27 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
42 43 8.928270 ACTAATAACAACATGCACTAGTAGAC 57.072 34.615 3.59 0.00 0.00 2.59
43 44 8.528643 ACTAATAACAACATGCACTAGTAGACA 58.471 33.333 3.59 2.13 0.00 3.41
44 45 9.366216 CTAATAACAACATGCACTAGTAGACAA 57.634 33.333 3.59 0.00 0.00 3.18
45 46 8.615878 AATAACAACATGCACTAGTAGACAAA 57.384 30.769 3.59 0.00 0.00 2.83
46 47 6.935741 AACAACATGCACTAGTAGACAAAA 57.064 33.333 3.59 0.00 0.00 2.44
47 48 6.935741 ACAACATGCACTAGTAGACAAAAA 57.064 33.333 3.59 0.00 0.00 1.94
66 67 2.472695 AAAACTCATGCGTGGCTAGA 57.527 45.000 5.98 0.00 0.00 2.43
67 68 2.472695 AAACTCATGCGTGGCTAGAA 57.527 45.000 5.98 0.00 0.00 2.10
68 69 2.472695 AACTCATGCGTGGCTAGAAA 57.527 45.000 5.98 0.00 0.00 2.52
69 70 2.015736 ACTCATGCGTGGCTAGAAAG 57.984 50.000 5.98 0.00 0.00 2.62
79 80 4.162690 CTAGAAAGCCCGGCCGCT 62.163 66.667 22.85 13.14 42.22 5.52
80 81 4.157120 TAGAAAGCCCGGCCGCTC 62.157 66.667 22.85 13.58 38.44 5.03
83 84 4.740822 AAAGCCCGGCCGCTCATT 62.741 61.111 22.85 9.62 38.44 2.57
87 88 4.473520 CCCGGCCGCTCATTGTCT 62.474 66.667 22.85 0.00 0.00 3.41
88 89 2.892425 CCGGCCGCTCATTGTCTC 60.892 66.667 22.85 0.00 0.00 3.36
89 90 2.892425 CGGCCGCTCATTGTCTCC 60.892 66.667 14.67 0.00 0.00 3.71
90 91 2.268920 GGCCGCTCATTGTCTCCA 59.731 61.111 0.00 0.00 0.00 3.86
91 92 1.377202 GGCCGCTCATTGTCTCCAA 60.377 57.895 0.00 0.00 34.45 3.53
92 93 0.960364 GGCCGCTCATTGTCTCCAAA 60.960 55.000 0.00 0.00 33.44 3.28
93 94 1.098050 GCCGCTCATTGTCTCCAAAT 58.902 50.000 0.00 0.00 33.44 2.32
94 95 2.288666 GCCGCTCATTGTCTCCAAATA 58.711 47.619 0.00 0.00 33.44 1.40
95 96 2.289002 GCCGCTCATTGTCTCCAAATAG 59.711 50.000 0.00 0.00 33.44 1.73
96 97 3.535561 CCGCTCATTGTCTCCAAATAGT 58.464 45.455 0.00 0.00 33.44 2.12
97 98 3.310774 CCGCTCATTGTCTCCAAATAGTG 59.689 47.826 0.00 0.00 33.44 2.74
98 99 3.242543 CGCTCATTGTCTCCAAATAGTGC 60.243 47.826 0.00 0.00 33.44 4.40
99 100 3.691118 GCTCATTGTCTCCAAATAGTGCA 59.309 43.478 0.00 0.00 33.44 4.57
100 101 4.337555 GCTCATTGTCTCCAAATAGTGCAT 59.662 41.667 0.00 0.00 33.44 3.96
101 102 5.528690 GCTCATTGTCTCCAAATAGTGCATA 59.471 40.000 0.00 0.00 33.44 3.14
102 103 6.206243 GCTCATTGTCTCCAAATAGTGCATAT 59.794 38.462 0.00 0.00 33.44 1.78
103 104 7.500720 TCATTGTCTCCAAATAGTGCATATG 57.499 36.000 0.00 0.00 33.44 1.78
104 105 5.756195 TTGTCTCCAAATAGTGCATATGC 57.244 39.130 21.09 21.09 42.50 3.14
105 106 5.829391 ATTGTCTCCAAATAGTGCATATGCA 59.171 36.000 26.32 26.32 40.64 3.96
122 123 8.579682 GCATATGCACTTTTTAGATTTTAGGG 57.420 34.615 22.84 0.00 41.59 3.53
123 124 8.197439 GCATATGCACTTTTTAGATTTTAGGGT 58.803 33.333 22.84 0.00 41.59 4.34
128 129 8.745590 TGCACTTTTTAGATTTTAGGGTAATCC 58.254 33.333 0.00 0.00 33.45 3.01
129 130 7.913821 GCACTTTTTAGATTTTAGGGTAATCCG 59.086 37.037 0.00 0.00 41.52 4.18
130 131 9.169592 CACTTTTTAGATTTTAGGGTAATCCGA 57.830 33.333 0.00 0.00 41.52 4.55
131 132 9.743581 ACTTTTTAGATTTTAGGGTAATCCGAA 57.256 29.630 0.00 0.00 41.52 4.30
134 135 9.689501 TTTTAGATTTTAGGGTAATCCGAATGT 57.310 29.630 0.00 0.00 41.52 2.71
137 138 8.848474 AGATTTTAGGGTAATCCGAATGTATG 57.152 34.615 0.00 0.00 41.52 2.39
138 139 8.656806 AGATTTTAGGGTAATCCGAATGTATGA 58.343 33.333 0.00 0.00 41.52 2.15
139 140 9.449719 GATTTTAGGGTAATCCGAATGTATGAT 57.550 33.333 0.00 0.00 41.52 2.45
141 142 9.715121 TTTTAGGGTAATCCGAATGTATGATAC 57.285 33.333 0.00 0.00 41.52 2.24
142 143 8.660295 TTAGGGTAATCCGAATGTATGATACT 57.340 34.615 4.03 0.00 41.52 2.12
143 144 7.554959 AGGGTAATCCGAATGTATGATACTT 57.445 36.000 4.03 0.00 41.52 2.24
144 145 7.386851 AGGGTAATCCGAATGTATGATACTTG 58.613 38.462 4.03 0.00 41.52 3.16
145 146 7.016268 AGGGTAATCCGAATGTATGATACTTGT 59.984 37.037 4.03 0.00 41.52 3.16
146 147 7.117812 GGGTAATCCGAATGTATGATACTTGTG 59.882 40.741 4.03 0.00 33.83 3.33
147 148 7.117812 GGTAATCCGAATGTATGATACTTGTGG 59.882 40.741 4.03 4.04 0.00 4.17
148 149 5.607939 TCCGAATGTATGATACTTGTGGT 57.392 39.130 4.03 0.00 0.00 4.16
149 150 6.718522 TCCGAATGTATGATACTTGTGGTA 57.281 37.500 4.03 0.00 34.62 3.25
150 151 7.297936 TCCGAATGTATGATACTTGTGGTAT 57.702 36.000 4.03 0.00 43.15 2.73
151 152 7.732025 TCCGAATGTATGATACTTGTGGTATT 58.268 34.615 4.03 0.00 40.82 1.89
152 153 8.208224 TCCGAATGTATGATACTTGTGGTATTT 58.792 33.333 4.03 0.00 40.82 1.40
153 154 8.282592 CCGAATGTATGATACTTGTGGTATTTG 58.717 37.037 4.03 0.00 40.82 2.32
154 155 9.040939 CGAATGTATGATACTTGTGGTATTTGA 57.959 33.333 4.03 0.00 40.82 2.69
160 161 8.677148 ATGATACTTGTGGTATTTGATACACC 57.323 34.615 0.00 0.00 40.82 4.16
161 162 7.625469 TGATACTTGTGGTATTTGATACACCA 58.375 34.615 0.00 0.00 40.82 4.17
162 163 8.103935 TGATACTTGTGGTATTTGATACACCAA 58.896 33.333 0.00 2.41 43.70 3.67
163 164 8.871629 ATACTTGTGGTATTTGATACACCAAA 57.128 30.769 0.00 0.00 43.70 3.28
164 165 7.214467 ACTTGTGGTATTTGATACACCAAAG 57.786 36.000 0.00 0.00 43.70 2.77
165 166 6.775629 ACTTGTGGTATTTGATACACCAAAGT 59.224 34.615 11.40 11.40 43.70 2.66
177 178 3.592898 CACCAAAGTGGAATTTAGGGC 57.407 47.619 0.18 0.00 40.96 5.19
178 179 2.233676 CACCAAAGTGGAATTTAGGGCC 59.766 50.000 0.00 0.00 40.96 5.80
179 180 2.111792 ACCAAAGTGGAATTTAGGGCCT 59.888 45.455 12.58 12.58 40.96 5.19
180 181 2.760650 CCAAAGTGGAATTTAGGGCCTC 59.239 50.000 10.74 0.00 40.96 4.70
181 182 3.564352 CCAAAGTGGAATTTAGGGCCTCT 60.564 47.826 10.74 0.00 40.96 3.69
182 183 4.089361 CAAAGTGGAATTTAGGGCCTCTT 58.911 43.478 10.74 0.81 37.17 2.85
183 184 4.404185 AAGTGGAATTTAGGGCCTCTTT 57.596 40.909 10.74 1.54 33.17 2.52
184 185 3.701664 AGTGGAATTTAGGGCCTCTTTG 58.298 45.455 10.74 0.00 0.00 2.77
185 186 3.333680 AGTGGAATTTAGGGCCTCTTTGA 59.666 43.478 10.74 0.00 0.00 2.69
186 187 4.017130 AGTGGAATTTAGGGCCTCTTTGAT 60.017 41.667 10.74 0.00 0.00 2.57
187 188 4.711846 GTGGAATTTAGGGCCTCTTTGATT 59.288 41.667 10.74 4.34 0.00 2.57
188 189 4.956075 TGGAATTTAGGGCCTCTTTGATTC 59.044 41.667 10.74 13.11 0.00 2.52
189 190 4.036852 GGAATTTAGGGCCTCTTTGATTCG 59.963 45.833 10.74 0.00 0.00 3.34
190 191 3.713826 TTTAGGGCCTCTTTGATTCGT 57.286 42.857 10.74 0.00 0.00 3.85
191 192 4.829872 TTTAGGGCCTCTTTGATTCGTA 57.170 40.909 10.74 0.00 0.00 3.43
192 193 2.990066 AGGGCCTCTTTGATTCGTAG 57.010 50.000 0.00 0.00 0.00 3.51
193 194 1.486726 AGGGCCTCTTTGATTCGTAGG 59.513 52.381 0.00 0.00 0.00 3.18
194 195 1.485066 GGGCCTCTTTGATTCGTAGGA 59.515 52.381 0.84 0.00 0.00 2.94
195 196 2.104963 GGGCCTCTTTGATTCGTAGGAT 59.895 50.000 0.84 0.00 0.00 3.24
196 197 3.433740 GGGCCTCTTTGATTCGTAGGATT 60.434 47.826 0.84 0.00 0.00 3.01
197 198 4.200092 GGCCTCTTTGATTCGTAGGATTT 58.800 43.478 0.00 0.00 0.00 2.17
198 199 4.640647 GGCCTCTTTGATTCGTAGGATTTT 59.359 41.667 0.00 0.00 0.00 1.82
199 200 5.820947 GGCCTCTTTGATTCGTAGGATTTTA 59.179 40.000 0.00 0.00 0.00 1.52
200 201 6.317893 GGCCTCTTTGATTCGTAGGATTTTAA 59.682 38.462 0.00 0.00 0.00 1.52
201 202 7.148137 GGCCTCTTTGATTCGTAGGATTTTAAA 60.148 37.037 0.00 0.00 0.00 1.52
202 203 8.241367 GCCTCTTTGATTCGTAGGATTTTAAAA 58.759 33.333 2.51 2.51 0.00 1.52
205 206 9.601971 TCTTTGATTCGTAGGATTTTAAAAACG 57.398 29.630 13.97 13.97 0.00 3.60
206 207 9.389570 CTTTGATTCGTAGGATTTTAAAAACGT 57.610 29.630 17.67 13.31 0.00 3.99
209 210 9.421806 TGATTCGTAGGATTTTAAAAACGTAGA 57.578 29.630 17.67 11.44 0.00 2.59
247 248 3.058160 GCAGTGGCATGCCGACTT 61.058 61.111 30.87 13.75 40.43 3.01
248 249 2.872557 CAGTGGCATGCCGACTTG 59.127 61.111 30.87 20.88 39.42 3.16
249 250 1.672030 CAGTGGCATGCCGACTTGA 60.672 57.895 30.87 10.37 39.42 3.02
250 251 1.073025 AGTGGCATGCCGACTTGAA 59.927 52.632 30.87 9.56 39.42 2.69
251 252 0.322816 AGTGGCATGCCGACTTGAAT 60.323 50.000 30.87 9.52 39.42 2.57
252 253 0.099436 GTGGCATGCCGACTTGAATC 59.901 55.000 30.87 9.12 39.42 2.52
253 254 1.031571 TGGCATGCCGACTTGAATCC 61.032 55.000 30.87 3.70 39.42 3.01
254 255 0.749454 GGCATGCCGACTTGAATCCT 60.749 55.000 23.48 0.00 0.00 3.24
255 256 1.475034 GGCATGCCGACTTGAATCCTA 60.475 52.381 23.48 0.00 0.00 2.94
256 257 2.498167 GCATGCCGACTTGAATCCTAT 58.502 47.619 6.36 0.00 0.00 2.57
257 258 3.557054 GGCATGCCGACTTGAATCCTATA 60.557 47.826 23.48 0.00 0.00 1.31
258 259 3.681897 GCATGCCGACTTGAATCCTATAG 59.318 47.826 6.36 0.00 0.00 1.31
259 260 4.248859 CATGCCGACTTGAATCCTATAGG 58.751 47.826 13.07 13.07 0.00 2.57
275 276 7.618019 TCCTATAGGATAGCAATGAGTGTTT 57.382 36.000 18.00 0.00 39.78 2.83
276 277 7.445121 TCCTATAGGATAGCAATGAGTGTTTG 58.555 38.462 18.00 0.00 39.78 2.93
277 278 7.290014 TCCTATAGGATAGCAATGAGTGTTTGA 59.710 37.037 18.00 0.00 39.78 2.69
278 279 8.099537 CCTATAGGATAGCAATGAGTGTTTGAT 58.900 37.037 14.11 0.00 37.39 2.57
279 280 7.741027 ATAGGATAGCAATGAGTGTTTGATG 57.259 36.000 0.00 0.00 0.00 3.07
280 281 4.885907 AGGATAGCAATGAGTGTTTGATGG 59.114 41.667 0.00 0.00 0.00 3.51
281 282 4.498682 GGATAGCAATGAGTGTTTGATGGC 60.499 45.833 0.00 0.00 0.00 4.40
282 283 2.241160 AGCAATGAGTGTTTGATGGCA 58.759 42.857 0.00 0.00 0.00 4.92
283 284 2.029649 AGCAATGAGTGTTTGATGGCAC 60.030 45.455 0.00 0.00 35.98 5.01
333 334 8.697507 AAGATTGGAGTGGATGTTATATTTCC 57.302 34.615 0.00 0.00 0.00 3.13
334 335 8.050316 AGATTGGAGTGGATGTTATATTTCCT 57.950 34.615 0.00 0.00 0.00 3.36
335 336 9.170890 AGATTGGAGTGGATGTTATATTTCCTA 57.829 33.333 0.00 0.00 0.00 2.94
336 337 9.220767 GATTGGAGTGGATGTTATATTTCCTAC 57.779 37.037 0.00 0.00 0.00 3.18
337 338 6.755206 TGGAGTGGATGTTATATTTCCTACG 58.245 40.000 0.00 0.00 0.00 3.51
338 339 6.551975 TGGAGTGGATGTTATATTTCCTACGA 59.448 38.462 0.00 0.00 0.00 3.43
339 340 7.070198 TGGAGTGGATGTTATATTTCCTACGAA 59.930 37.037 0.00 0.00 0.00 3.85
340 341 7.929785 GGAGTGGATGTTATATTTCCTACGAAA 59.070 37.037 0.00 0.00 42.10 3.46
342 343 9.273016 AGTGGATGTTATATTTCCTACGAAATG 57.727 33.333 9.23 0.00 46.07 2.32
343 344 9.052759 GTGGATGTTATATTTCCTACGAAATGT 57.947 33.333 9.23 6.00 46.07 2.71
361 362 9.529823 ACGAAATGTAGTATAGATTCCATAGGA 57.470 33.333 0.00 0.00 32.87 2.94
398 399 9.478238 TGGAATTCAATCCTATGAATCAAAAGA 57.522 29.630 7.93 0.00 46.57 2.52
399 400 9.741647 GGAATTCAATCCTATGAATCAAAAGAC 57.258 33.333 7.93 0.00 46.57 3.01
400 401 9.741647 GAATTCAATCCTATGAATCAAAAGACC 57.258 33.333 0.00 0.00 46.57 3.85
401 402 8.827832 ATTCAATCCTATGAATCAAAAGACCA 57.172 30.769 0.00 0.00 44.64 4.02
402 403 8.827832 TTCAATCCTATGAATCAAAAGACCAT 57.172 30.769 0.00 0.00 34.50 3.55
403 404 8.827832 TCAATCCTATGAATCAAAAGACCATT 57.172 30.769 0.00 0.00 0.00 3.16
404 405 9.919416 TCAATCCTATGAATCAAAAGACCATTA 57.081 29.630 0.00 0.00 0.00 1.90
470 471 6.806388 AAAATTCCATTGAATCAAAGGTGC 57.194 33.333 15.72 0.00 40.34 5.01
471 472 3.959535 TTCCATTGAATCAAAGGTGCC 57.040 42.857 15.72 0.00 34.34 5.01
472 473 2.178580 TCCATTGAATCAAAGGTGCCC 58.821 47.619 15.72 0.00 34.34 5.36
473 474 2.181975 CCATTGAATCAAAGGTGCCCT 58.818 47.619 8.94 0.00 33.87 5.19
474 475 6.522084 ATTCCATTGAATCAAAGGTGCCCTT 61.522 40.000 15.72 0.99 40.27 3.95
475 476 3.768757 CCATTGAATCAAAGGTGCCCTTA 59.231 43.478 8.94 0.00 43.92 2.69
476 477 4.142093 CCATTGAATCAAAGGTGCCCTTAG 60.142 45.833 8.94 0.00 43.92 2.18
477 478 2.446435 TGAATCAAAGGTGCCCTTAGC 58.554 47.619 6.88 0.00 43.92 3.09
478 479 2.041620 TGAATCAAAGGTGCCCTTAGCT 59.958 45.455 6.88 0.00 43.92 3.32
479 480 2.907458 ATCAAAGGTGCCCTTAGCTT 57.093 45.000 6.88 0.00 43.92 3.74
480 481 1.909700 TCAAAGGTGCCCTTAGCTTG 58.090 50.000 6.88 2.90 43.92 4.01
481 482 1.144913 TCAAAGGTGCCCTTAGCTTGT 59.855 47.619 6.88 0.00 43.92 3.16
482 483 1.270550 CAAAGGTGCCCTTAGCTTGTG 59.729 52.381 6.88 0.00 43.92 3.33
483 484 0.251341 AAGGTGCCCTTAGCTTGTGG 60.251 55.000 4.81 0.00 42.74 4.17
484 485 1.074951 GGTGCCCTTAGCTTGTGGT 59.925 57.895 0.00 0.00 44.23 4.16
485 486 1.244019 GGTGCCCTTAGCTTGTGGTG 61.244 60.000 0.00 0.00 44.23 4.17
486 487 0.537371 GTGCCCTTAGCTTGTGGTGT 60.537 55.000 0.00 0.00 44.23 4.16
487 488 0.537143 TGCCCTTAGCTTGTGGTGTG 60.537 55.000 0.00 0.00 44.23 3.82
488 489 0.537371 GCCCTTAGCTTGTGGTGTGT 60.537 55.000 0.00 0.00 38.99 3.72
489 490 1.523758 CCCTTAGCTTGTGGTGTGTC 58.476 55.000 0.00 0.00 0.00 3.67
490 491 1.523758 CCTTAGCTTGTGGTGTGTCC 58.476 55.000 0.00 0.00 0.00 4.02
491 492 1.202758 CCTTAGCTTGTGGTGTGTCCA 60.203 52.381 0.00 0.00 45.01 4.02
500 501 0.250727 TGGTGTGTCCAGGCTTTAGC 60.251 55.000 0.00 0.00 41.93 3.09
501 502 0.250727 GGTGTGTCCAGGCTTTAGCA 60.251 55.000 3.88 0.00 38.36 3.49
502 503 1.604604 GTGTGTCCAGGCTTTAGCAA 58.395 50.000 3.88 0.00 44.36 3.91
503 504 2.162681 GTGTGTCCAGGCTTTAGCAAT 58.837 47.619 3.88 0.00 44.36 3.56
504 505 2.162408 GTGTGTCCAGGCTTTAGCAATC 59.838 50.000 3.88 0.00 44.36 2.67
505 506 1.398390 GTGTCCAGGCTTTAGCAATCG 59.602 52.381 3.88 0.00 44.36 3.34
506 507 1.017387 GTCCAGGCTTTAGCAATCGG 58.983 55.000 3.88 0.00 44.36 4.18
507 508 0.748005 TCCAGGCTTTAGCAATCGGC 60.748 55.000 3.88 0.00 44.36 5.54
535 536 4.308458 CCTGCCCGTGACCGTGAA 62.308 66.667 0.00 0.00 0.00 3.18
536 537 3.041940 CTGCCCGTGACCGTGAAC 61.042 66.667 0.00 0.00 0.00 3.18
537 538 3.515316 CTGCCCGTGACCGTGAACT 62.515 63.158 0.00 0.00 0.00 3.01
538 539 2.280592 GCCCGTGACCGTGAACTT 60.281 61.111 0.00 0.00 0.00 2.66
539 540 1.005867 GCCCGTGACCGTGAACTTA 60.006 57.895 0.00 0.00 0.00 2.24
540 541 1.012486 GCCCGTGACCGTGAACTTAG 61.012 60.000 0.00 0.00 0.00 2.18
541 542 1.012486 CCCGTGACCGTGAACTTAGC 61.012 60.000 0.00 0.00 0.00 3.09
542 543 0.319211 CCGTGACCGTGAACTTAGCA 60.319 55.000 0.00 0.00 0.00 3.49
543 544 1.060713 CGTGACCGTGAACTTAGCAG 58.939 55.000 0.00 0.00 0.00 4.24
544 545 1.602165 CGTGACCGTGAACTTAGCAGT 60.602 52.381 0.00 0.00 33.11 4.40
545 546 2.351060 CGTGACCGTGAACTTAGCAGTA 60.351 50.000 0.00 0.00 30.68 2.74
546 547 2.985139 GTGACCGTGAACTTAGCAGTAC 59.015 50.000 0.00 0.00 30.68 2.73
547 548 2.889045 TGACCGTGAACTTAGCAGTACT 59.111 45.455 0.00 0.00 30.68 2.73
548 549 3.319972 TGACCGTGAACTTAGCAGTACTT 59.680 43.478 0.00 0.00 30.68 2.24
549 550 3.650139 ACCGTGAACTTAGCAGTACTTG 58.350 45.455 0.00 0.00 30.68 3.16
550 551 2.993899 CCGTGAACTTAGCAGTACTTGG 59.006 50.000 0.00 0.00 30.68 3.61
551 552 2.993899 CGTGAACTTAGCAGTACTTGGG 59.006 50.000 0.00 0.00 30.68 4.12
552 553 2.742589 GTGAACTTAGCAGTACTTGGGC 59.257 50.000 0.00 0.00 30.68 5.36
553 554 2.290071 TGAACTTAGCAGTACTTGGGCC 60.290 50.000 0.00 0.00 30.68 5.80
554 555 0.618981 ACTTAGCAGTACTTGGGCCC 59.381 55.000 17.59 17.59 0.00 5.80
555 556 0.912486 CTTAGCAGTACTTGGGCCCT 59.088 55.000 25.70 5.02 0.00 5.19
556 557 1.282157 CTTAGCAGTACTTGGGCCCTT 59.718 52.381 25.70 10.02 0.00 3.95
557 558 0.618458 TAGCAGTACTTGGGCCCTTG 59.382 55.000 25.70 17.95 0.00 3.61
558 559 1.074951 GCAGTACTTGGGCCCTTGT 59.925 57.895 25.70 22.75 0.00 3.16
559 560 0.960861 GCAGTACTTGGGCCCTTGTC 60.961 60.000 25.70 14.34 0.00 3.18
560 561 0.693049 CAGTACTTGGGCCCTTGTCT 59.307 55.000 25.70 16.12 0.00 3.41
561 562 0.984995 AGTACTTGGGCCCTTGTCTC 59.015 55.000 25.70 16.50 0.00 3.36
562 563 0.984995 GTACTTGGGCCCTTGTCTCT 59.015 55.000 25.70 2.10 0.00 3.10
563 564 1.351350 GTACTTGGGCCCTTGTCTCTT 59.649 52.381 25.70 1.73 0.00 2.85
564 565 0.853530 ACTTGGGCCCTTGTCTCTTT 59.146 50.000 25.70 0.00 0.00 2.52
565 566 1.202940 ACTTGGGCCCTTGTCTCTTTC 60.203 52.381 25.70 0.00 0.00 2.62
566 567 0.850100 TTGGGCCCTTGTCTCTTTCA 59.150 50.000 25.70 0.00 0.00 2.69
567 568 0.401738 TGGGCCCTTGTCTCTTTCAG 59.598 55.000 25.70 0.00 0.00 3.02
568 569 0.322906 GGGCCCTTGTCTCTTTCAGG 60.323 60.000 17.04 0.00 0.00 3.86
569 570 0.322906 GGCCCTTGTCTCTTTCAGGG 60.323 60.000 0.00 0.00 39.47 4.45
570 571 3.256281 CCCTTGTCTCTTTCAGGGC 57.744 57.895 0.00 0.00 31.89 5.19
571 572 0.322906 CCCTTGTCTCTTTCAGGGCC 60.323 60.000 0.00 0.00 31.89 5.80
572 573 0.674895 CCTTGTCTCTTTCAGGGCCG 60.675 60.000 0.00 0.00 0.00 6.13
573 574 0.321671 CTTGTCTCTTTCAGGGCCGA 59.678 55.000 0.00 0.00 0.00 5.54
574 575 0.762418 TTGTCTCTTTCAGGGCCGAA 59.238 50.000 0.00 1.88 0.00 4.30
575 576 0.034896 TGTCTCTTTCAGGGCCGAAC 59.965 55.000 9.75 1.52 0.00 3.95
576 577 0.673956 GTCTCTTTCAGGGCCGAACC 60.674 60.000 9.75 0.00 37.93 3.62
577 578 0.836400 TCTCTTTCAGGGCCGAACCT 60.836 55.000 9.75 0.00 43.08 3.50
578 579 0.902531 CTCTTTCAGGGCCGAACCTA 59.097 55.000 9.75 0.00 39.34 3.08
579 580 0.902531 TCTTTCAGGGCCGAACCTAG 59.097 55.000 9.75 6.25 39.34 3.02
580 581 0.902531 CTTTCAGGGCCGAACCTAGA 59.097 55.000 9.75 0.00 39.34 2.43
581 582 1.278127 CTTTCAGGGCCGAACCTAGAA 59.722 52.381 9.75 2.90 39.34 2.10
582 583 1.580059 TTCAGGGCCGAACCTAGAAT 58.420 50.000 0.00 0.00 39.34 2.40
583 584 1.120530 TCAGGGCCGAACCTAGAATC 58.879 55.000 0.00 0.00 39.34 2.52
584 585 1.123928 CAGGGCCGAACCTAGAATCT 58.876 55.000 0.00 0.00 39.34 2.40
585 586 1.123928 AGGGCCGAACCTAGAATCTG 58.876 55.000 0.00 0.00 39.65 2.90
586 587 0.831307 GGGCCGAACCTAGAATCTGT 59.169 55.000 0.00 0.00 39.10 3.41
587 588 2.037144 GGGCCGAACCTAGAATCTGTA 58.963 52.381 0.00 0.00 39.10 2.74
591 592 3.707793 CCGAACCTAGAATCTGTACAGC 58.292 50.000 18.45 4.42 0.00 4.40
639 640 1.407258 TGGCCGTTCTTTTCCTTTGTG 59.593 47.619 0.00 0.00 0.00 3.33
716 731 3.577919 GAGACCCAGATATACCACCTGT 58.422 50.000 0.00 0.00 0.00 4.00
718 733 2.633481 GACCCAGATATACCACCTGTCC 59.367 54.545 0.00 0.00 0.00 4.02
721 736 2.368875 CCAGATATACCACCTGTCCACC 59.631 54.545 0.00 0.00 0.00 4.61
722 737 2.035961 CAGATATACCACCTGTCCACCG 59.964 54.545 0.00 0.00 0.00 4.94
736 752 1.440518 CACCGGCGTATCTCGATCG 60.441 63.158 9.36 9.36 42.86 3.69
738 754 2.502080 CGGCGTATCTCGATCGGC 60.502 66.667 16.41 9.27 44.41 5.54
739 755 2.955402 GGCGTATCTCGATCGGCT 59.045 61.111 16.41 2.75 44.45 5.52
740 756 1.442857 GGCGTATCTCGATCGGCTG 60.443 63.158 16.41 6.32 44.45 4.85
741 757 2.083522 GCGTATCTCGATCGGCTGC 61.084 63.158 16.41 7.52 42.86 5.25
742 758 1.282875 CGTATCTCGATCGGCTGCA 59.717 57.895 16.41 0.00 42.86 4.41
860 880 2.417516 CATCGCCACTACCTCCGG 59.582 66.667 0.00 0.00 0.00 5.14
966 988 4.868195 GTTCCATTGCAGAACCGC 57.132 55.556 6.13 0.00 38.12 5.68
975 998 0.666274 TGCAGAACCGCACTAACTCG 60.666 55.000 0.00 0.00 36.86 4.18
1197 1233 1.666700 CTCGTCTCGTTCGATTCCTCT 59.333 52.381 0.00 0.00 36.73 3.69
1200 1239 2.096174 CGTCTCGTTCGATTCCTCTCTT 59.904 50.000 0.00 0.00 0.00 2.85
1211 1250 4.274950 CGATTCCTCTCTTCTCTGTACTCC 59.725 50.000 0.00 0.00 0.00 3.85
1218 1257 0.601558 TTCTCTGTACTCCCGTGTGC 59.398 55.000 0.00 0.00 0.00 4.57
1219 1258 0.251209 TCTCTGTACTCCCGTGTGCT 60.251 55.000 0.00 0.00 0.00 4.40
1357 1405 4.895668 TCTGGAACCACCGTAAGTATTT 57.104 40.909 0.00 0.00 42.61 1.40
1359 1407 3.937079 CTGGAACCACCGTAAGTATTTCC 59.063 47.826 0.00 0.00 42.61 3.13
1360 1408 3.583966 TGGAACCACCGTAAGTATTTCCT 59.416 43.478 0.00 0.00 42.61 3.36
1361 1409 4.186926 GGAACCACCGTAAGTATTTCCTC 58.813 47.826 0.00 0.00 36.36 3.71
1362 1410 3.900966 ACCACCGTAAGTATTTCCTCC 57.099 47.619 0.00 0.00 0.00 4.30
1363 1411 2.502947 ACCACCGTAAGTATTTCCTCCC 59.497 50.000 0.00 0.00 0.00 4.30
1364 1412 2.770232 CCACCGTAAGTATTTCCTCCCT 59.230 50.000 0.00 0.00 0.00 4.20
1365 1413 3.431766 CCACCGTAAGTATTTCCTCCCTG 60.432 52.174 0.00 0.00 0.00 4.45
1366 1414 2.169978 ACCGTAAGTATTTCCTCCCTGC 59.830 50.000 0.00 0.00 0.00 4.85
1367 1415 2.470821 CGTAAGTATTTCCTCCCTGCG 58.529 52.381 0.00 0.00 0.00 5.18
1368 1416 2.100252 CGTAAGTATTTCCTCCCTGCGA 59.900 50.000 0.00 0.00 0.00 5.10
1369 1417 3.243771 CGTAAGTATTTCCTCCCTGCGAT 60.244 47.826 0.00 0.00 0.00 4.58
1370 1418 3.933861 AAGTATTTCCTCCCTGCGATT 57.066 42.857 0.00 0.00 0.00 3.34
1371 1419 3.477210 AGTATTTCCTCCCTGCGATTC 57.523 47.619 0.00 0.00 0.00 2.52
1372 1420 2.771943 AGTATTTCCTCCCTGCGATTCA 59.228 45.455 0.00 0.00 0.00 2.57
1373 1421 2.338577 ATTTCCTCCCTGCGATTCAG 57.661 50.000 0.00 0.00 42.49 3.02
1390 1438 2.764128 GGTCCATCCCTGCCTCGA 60.764 66.667 0.00 0.00 0.00 4.04
1391 1439 2.143419 GGTCCATCCCTGCCTCGAT 61.143 63.158 0.00 0.00 0.00 3.59
1394 1442 1.072159 CCATCCCTGCCTCGATTCC 59.928 63.158 0.00 0.00 0.00 3.01
1396 1444 0.034616 CATCCCTGCCTCGATTCCTC 59.965 60.000 0.00 0.00 0.00 3.71
1397 1445 1.467678 ATCCCTGCCTCGATTCCTCG 61.468 60.000 0.00 0.00 46.41 4.63
1398 1446 2.427245 CCCTGCCTCGATTCCTCGT 61.427 63.158 0.00 0.00 45.25 4.18
1399 1447 1.066587 CCTGCCTCGATTCCTCGTC 59.933 63.158 0.00 0.00 45.25 4.20
1400 1448 1.298713 CTGCCTCGATTCCTCGTCG 60.299 63.158 0.00 0.00 45.25 5.12
1401 1449 1.715862 CTGCCTCGATTCCTCGTCGA 61.716 60.000 0.00 0.00 45.25 4.20
1402 1450 1.101635 TGCCTCGATTCCTCGTCGAT 61.102 55.000 0.00 0.00 45.81 3.59
1403 1451 0.386226 GCCTCGATTCCTCGTCGATC 60.386 60.000 0.00 0.00 45.81 3.69
1404 1452 0.110599 CCTCGATTCCTCGTCGATCG 60.111 60.000 9.36 9.36 45.81 3.69
1742 1794 2.117865 CAAGCATCCTCCCTTCTCTCT 58.882 52.381 0.00 0.00 0.00 3.10
1743 1795 1.792115 AGCATCCTCCCTTCTCTCTG 58.208 55.000 0.00 0.00 0.00 3.35
1744 1796 1.008206 AGCATCCTCCCTTCTCTCTGT 59.992 52.381 0.00 0.00 0.00 3.41
1745 1797 1.138661 GCATCCTCCCTTCTCTCTGTG 59.861 57.143 0.00 0.00 0.00 3.66
1746 1798 1.138661 CATCCTCCCTTCTCTCTGTGC 59.861 57.143 0.00 0.00 0.00 4.57
1747 1799 0.115152 TCCTCCCTTCTCTCTGTGCA 59.885 55.000 0.00 0.00 0.00 4.57
1748 1800 0.248843 CCTCCCTTCTCTCTGTGCAC 59.751 60.000 10.75 10.75 0.00 4.57
1749 1801 0.248843 CTCCCTTCTCTCTGTGCACC 59.751 60.000 15.69 0.00 0.00 5.01
1750 1802 1.194781 TCCCTTCTCTCTGTGCACCC 61.195 60.000 15.69 0.00 0.00 4.61
1751 1803 1.298014 CCTTCTCTCTGTGCACCCC 59.702 63.158 15.69 0.00 0.00 4.95
1752 1804 1.197430 CCTTCTCTCTGTGCACCCCT 61.197 60.000 15.69 0.00 0.00 4.79
1753 1805 0.248843 CTTCTCTCTGTGCACCCCTC 59.751 60.000 15.69 0.00 0.00 4.30
1760 1812 2.352422 GTGCACCCCTCATCAGCA 59.648 61.111 5.22 0.00 0.00 4.41
1772 1824 3.622163 CCTCATCAGCATCAGTTCACTTC 59.378 47.826 0.00 0.00 0.00 3.01
1773 1825 4.251268 CTCATCAGCATCAGTTCACTTCA 58.749 43.478 0.00 0.00 0.00 3.02
1774 1826 4.840271 TCATCAGCATCAGTTCACTTCAT 58.160 39.130 0.00 0.00 0.00 2.57
1782 1834 5.519566 GCATCAGTTCACTTCATACTCTCAG 59.480 44.000 0.00 0.00 0.00 3.35
1911 1967 2.107546 ACCACCGACAACCACGAC 59.892 61.111 0.00 0.00 0.00 4.34
1996 2052 1.381872 CGTCCCTGACCCATCTCCT 60.382 63.158 0.00 0.00 0.00 3.69
2000 2056 0.621571 CCCTGACCCATCTCCTTCCA 60.622 60.000 0.00 0.00 0.00 3.53
2001 2057 0.543749 CCTGACCCATCTCCTTCCAC 59.456 60.000 0.00 0.00 0.00 4.02
2012 2068 2.572284 CTTCCACTCCGTCCGTCC 59.428 66.667 0.00 0.00 0.00 4.79
2069 2131 1.521681 GCGGCACTATCCTGTCACC 60.522 63.158 0.00 0.00 0.00 4.02
2085 2147 2.731976 GTCACCGACTGATCAGTGTTTC 59.268 50.000 32.50 16.67 42.66 2.78
2177 2242 2.159382 CAATAAACCTCCGTTGCCTGT 58.841 47.619 0.00 0.00 30.72 4.00
2188 2257 1.138036 TTGCCTGTCGTCGGTATCG 59.862 57.895 0.00 0.00 37.82 2.92
2199 2268 0.322322 TCGGTATCGCCAACCACTTT 59.678 50.000 0.00 0.00 36.78 2.66
2205 2274 2.780094 CGCCAACCACTTTGCACCA 61.780 57.895 0.00 0.00 33.34 4.17
2223 2292 6.584488 TGCACCAAGAAAGTGTTACTACTAA 58.416 36.000 0.00 0.00 37.56 2.24
2225 2294 7.386848 TGCACCAAGAAAGTGTTACTACTAATC 59.613 37.037 0.00 0.00 37.56 1.75
2226 2295 7.411588 GCACCAAGAAAGTGTTACTACTAATCG 60.412 40.741 0.00 0.00 37.56 3.34
2227 2296 7.811236 CACCAAGAAAGTGTTACTACTAATCGA 59.189 37.037 0.00 0.00 0.00 3.59
2228 2297 8.529476 ACCAAGAAAGTGTTACTACTAATCGAT 58.471 33.333 0.00 0.00 0.00 3.59
2246 2319 2.608016 CGATATATGCAGCGCCGGATAT 60.608 50.000 19.62 19.62 34.65 1.63
2252 2325 0.179073 GCAGCGCCGGATATGGATAT 60.179 55.000 5.05 0.00 0.00 1.63
2307 2429 1.370437 CTGCTCCCTCCGATCCATG 59.630 63.158 0.00 0.00 0.00 3.66
2314 2436 4.319177 CTCCCTCCGATCCATGTTAATTC 58.681 47.826 0.00 0.00 0.00 2.17
2325 2447 6.757897 TCCATGTTAATTCTCGCAGATTTT 57.242 33.333 0.00 0.00 33.89 1.82
2435 2560 2.167693 TGTAACCCTGAACCTCGCATAG 59.832 50.000 0.00 0.00 0.00 2.23
2525 2650 0.244994 AGCTAGTCAAGTGCCTCACG 59.755 55.000 0.00 0.00 39.64 4.35
2526 2651 0.243907 GCTAGTCAAGTGCCTCACGA 59.756 55.000 0.00 0.00 39.64 4.35
2527 2652 1.336887 GCTAGTCAAGTGCCTCACGAA 60.337 52.381 0.00 0.00 39.64 3.85
2528 2653 2.329379 CTAGTCAAGTGCCTCACGAAC 58.671 52.381 0.00 0.00 39.64 3.95
2547 2672 5.671997 ACGAACAATTTACAACAACGTTACG 59.328 36.000 0.00 2.19 0.00 3.18
2620 2772 2.599032 TGCATGGCATGGAGGAGG 59.401 61.111 27.48 1.89 31.71 4.30
2632 2784 2.838225 AGGAGGTATGGCGGACGG 60.838 66.667 0.00 0.00 0.00 4.79
2633 2785 2.836360 GGAGGTATGGCGGACGGA 60.836 66.667 0.00 0.00 0.00 4.69
2635 2787 3.501458 GAGGTATGGCGGACGGAGC 62.501 68.421 0.00 0.00 0.00 4.70
2636 2788 3.537874 GGTATGGCGGACGGAGCT 61.538 66.667 0.00 0.00 34.52 4.09
2637 2789 2.279517 GTATGGCGGACGGAGCTG 60.280 66.667 0.00 0.00 34.52 4.24
2638 2790 2.758327 TATGGCGGACGGAGCTGT 60.758 61.111 0.00 0.00 34.52 4.40
2639 2791 2.355986 TATGGCGGACGGAGCTGTT 61.356 57.895 0.00 0.00 34.52 3.16
2640 2792 2.572095 TATGGCGGACGGAGCTGTTG 62.572 60.000 0.00 0.00 34.52 3.33
2642 2794 4.681978 GCGGACGGAGCTGTTGGT 62.682 66.667 0.00 0.00 0.00 3.67
2643 2795 2.030562 CGGACGGAGCTGTTGGTT 59.969 61.111 0.00 0.00 0.00 3.67
2644 2796 1.597027 CGGACGGAGCTGTTGGTTT 60.597 57.895 0.00 0.00 0.00 3.27
2645 2797 1.841663 CGGACGGAGCTGTTGGTTTG 61.842 60.000 0.00 0.00 0.00 2.93
2646 2798 0.818040 GGACGGAGCTGTTGGTTTGT 60.818 55.000 0.00 0.00 0.00 2.83
2647 2799 0.307760 GACGGAGCTGTTGGTTTGTG 59.692 55.000 0.00 0.00 0.00 3.33
2648 2800 1.008538 CGGAGCTGTTGGTTTGTGC 60.009 57.895 0.00 0.00 0.00 4.57
2649 2801 1.723608 CGGAGCTGTTGGTTTGTGCA 61.724 55.000 0.00 0.00 0.00 4.57
2650 2802 0.249031 GGAGCTGTTGGTTTGTGCAC 60.249 55.000 10.75 10.75 0.00 4.57
2651 2803 0.592247 GAGCTGTTGGTTTGTGCACG 60.592 55.000 13.13 0.00 0.00 5.34
2699 2854 2.474266 GTGCGTGCGGTATGTGTG 59.526 61.111 0.00 0.00 0.00 3.82
2700 2855 2.029815 TGCGTGCGGTATGTGTGT 59.970 55.556 0.00 0.00 0.00 3.72
2701 2856 2.313909 TGCGTGCGGTATGTGTGTG 61.314 57.895 0.00 0.00 0.00 3.82
2702 2857 2.474266 CGTGCGGTATGTGTGTGC 59.526 61.111 0.00 0.00 0.00 4.57
2727 2895 6.635645 CGGGTATAATTGATGGATGGATGGAT 60.636 42.308 0.00 0.00 0.00 3.41
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 8.528643 TGTCTACTAGTGCATGTTGTTATTAGT 58.471 33.333 5.39 0.00 0.00 2.24
18 19 8.926715 TGTCTACTAGTGCATGTTGTTATTAG 57.073 34.615 5.39 0.00 0.00 1.73
19 20 9.713713 TTTGTCTACTAGTGCATGTTGTTATTA 57.286 29.630 5.39 0.00 0.00 0.98
20 21 8.615878 TTTGTCTACTAGTGCATGTTGTTATT 57.384 30.769 5.39 0.00 0.00 1.40
21 22 8.615878 TTTTGTCTACTAGTGCATGTTGTTAT 57.384 30.769 5.39 0.00 0.00 1.89
22 23 8.439993 TTTTTGTCTACTAGTGCATGTTGTTA 57.560 30.769 5.39 0.00 0.00 2.41
23 24 6.935741 TTTTGTCTACTAGTGCATGTTGTT 57.064 33.333 5.39 0.00 0.00 2.83
24 25 6.935741 TTTTTGTCTACTAGTGCATGTTGT 57.064 33.333 5.39 0.00 0.00 3.32
46 47 2.778299 TCTAGCCACGCATGAGTTTTT 58.222 42.857 0.00 0.00 0.00 1.94
47 48 2.472695 TCTAGCCACGCATGAGTTTT 57.527 45.000 0.00 0.00 0.00 2.43
48 49 2.472695 TTCTAGCCACGCATGAGTTT 57.527 45.000 0.00 0.00 0.00 2.66
49 50 2.350522 CTTTCTAGCCACGCATGAGTT 58.649 47.619 0.00 0.00 0.00 3.01
50 51 2.009042 GCTTTCTAGCCACGCATGAGT 61.009 52.381 0.00 0.00 41.74 3.41
51 52 0.654683 GCTTTCTAGCCACGCATGAG 59.345 55.000 0.00 0.00 41.74 2.90
52 53 2.767536 GCTTTCTAGCCACGCATGA 58.232 52.632 0.00 0.00 41.74 3.07
62 63 4.162690 AGCGGCCGGGCTTTCTAG 62.163 66.667 29.38 10.33 41.39 2.43
63 64 4.157120 GAGCGGCCGGGCTTTCTA 62.157 66.667 29.38 0.00 44.93 2.10
66 67 4.740822 AATGAGCGGCCGGGCTTT 62.741 61.111 29.38 13.87 44.93 3.51
70 71 4.473520 AGACAATGAGCGGCCGGG 62.474 66.667 29.38 0.00 0.00 5.73
71 72 2.892425 GAGACAATGAGCGGCCGG 60.892 66.667 29.38 11.67 0.00 6.13
72 73 2.892425 GGAGACAATGAGCGGCCG 60.892 66.667 24.05 24.05 0.00 6.13
73 74 2.268920 TGGAGACAATGAGCGGCC 59.731 61.111 0.00 0.00 37.44 6.13
78 79 7.784336 GCATATGCACTATTTGGAGACAATGAG 60.784 40.741 22.84 0.00 45.41 2.90
79 80 6.016860 GCATATGCACTATTTGGAGACAATGA 60.017 38.462 22.84 0.00 45.41 2.57
80 81 6.147581 GCATATGCACTATTTGGAGACAATG 58.852 40.000 22.84 0.00 45.41 2.82
81 82 6.323203 GCATATGCACTATTTGGAGACAAT 57.677 37.500 22.84 0.00 45.41 2.71
82 83 5.756195 GCATATGCACTATTTGGAGACAA 57.244 39.130 22.84 0.00 44.82 3.18
97 98 8.197439 ACCCTAAAATCTAAAAAGTGCATATGC 58.803 33.333 21.09 21.09 42.50 3.14
102 103 8.745590 GGATTACCCTAAAATCTAAAAAGTGCA 58.254 33.333 0.00 0.00 34.43 4.57
103 104 7.913821 CGGATTACCCTAAAATCTAAAAAGTGC 59.086 37.037 0.00 0.00 34.43 4.40
104 105 9.169592 TCGGATTACCCTAAAATCTAAAAAGTG 57.830 33.333 0.00 0.00 34.43 3.16
105 106 9.743581 TTCGGATTACCCTAAAATCTAAAAAGT 57.256 29.630 0.00 0.00 34.43 2.66
108 109 9.689501 ACATTCGGATTACCCTAAAATCTAAAA 57.310 29.630 0.00 0.00 34.43 1.52
111 112 9.938280 CATACATTCGGATTACCCTAAAATCTA 57.062 33.333 0.00 0.00 34.43 1.98
112 113 8.656806 TCATACATTCGGATTACCCTAAAATCT 58.343 33.333 0.00 0.00 34.43 2.40
113 114 8.842358 TCATACATTCGGATTACCCTAAAATC 57.158 34.615 0.00 0.00 33.44 2.17
115 116 9.715121 GTATCATACATTCGGATTACCCTAAAA 57.285 33.333 0.00 0.00 0.00 1.52
116 117 9.096823 AGTATCATACATTCGGATTACCCTAAA 57.903 33.333 0.00 0.00 0.00 1.85
117 118 8.660295 AGTATCATACATTCGGATTACCCTAA 57.340 34.615 0.00 0.00 0.00 2.69
118 119 8.528643 CAAGTATCATACATTCGGATTACCCTA 58.471 37.037 0.00 0.00 0.00 3.53
119 120 7.016268 ACAAGTATCATACATTCGGATTACCCT 59.984 37.037 0.00 0.00 0.00 4.34
120 121 7.117812 CACAAGTATCATACATTCGGATTACCC 59.882 40.741 0.00 0.00 0.00 3.69
121 122 7.117812 CCACAAGTATCATACATTCGGATTACC 59.882 40.741 0.00 0.00 0.00 2.85
122 123 7.656137 ACCACAAGTATCATACATTCGGATTAC 59.344 37.037 0.00 0.00 0.00 1.89
123 124 7.732025 ACCACAAGTATCATACATTCGGATTA 58.268 34.615 0.00 0.00 0.00 1.75
124 125 6.591935 ACCACAAGTATCATACATTCGGATT 58.408 36.000 0.00 0.00 0.00 3.01
125 126 6.174720 ACCACAAGTATCATACATTCGGAT 57.825 37.500 0.00 0.00 0.00 4.18
126 127 5.607939 ACCACAAGTATCATACATTCGGA 57.392 39.130 0.00 0.00 0.00 4.55
127 128 7.962964 AATACCACAAGTATCATACATTCGG 57.037 36.000 0.00 0.00 40.98 4.30
128 129 9.040939 TCAAATACCACAAGTATCATACATTCG 57.959 33.333 0.00 0.00 40.98 3.34
134 135 9.772973 GGTGTATCAAATACCACAAGTATCATA 57.227 33.333 0.00 0.00 40.98 2.15
135 136 8.271458 TGGTGTATCAAATACCACAAGTATCAT 58.729 33.333 0.00 0.00 40.98 2.45
136 137 7.625469 TGGTGTATCAAATACCACAAGTATCA 58.375 34.615 0.00 0.00 40.98 2.15
137 138 8.500753 TTGGTGTATCAAATACCACAAGTATC 57.499 34.615 0.00 0.00 43.68 2.24
138 139 8.871629 TTTGGTGTATCAAATACCACAAGTAT 57.128 30.769 0.00 0.00 43.68 2.12
139 140 7.940137 ACTTTGGTGTATCAAATACCACAAGTA 59.060 33.333 15.12 0.00 43.68 2.24
140 141 6.775629 ACTTTGGTGTATCAAATACCACAAGT 59.224 34.615 0.71 0.71 43.68 3.16
141 142 7.083858 CACTTTGGTGTATCAAATACCACAAG 58.916 38.462 0.01 0.01 43.68 3.16
142 143 6.015856 CCACTTTGGTGTATCAAATACCACAA 60.016 38.462 0.00 0.00 43.68 3.33
143 144 5.475220 CCACTTTGGTGTATCAAATACCACA 59.525 40.000 0.00 0.00 43.68 4.17
144 145 5.708230 TCCACTTTGGTGTATCAAATACCAC 59.292 40.000 0.00 0.00 43.68 4.16
145 146 5.882040 TCCACTTTGGTGTATCAAATACCA 58.118 37.500 0.00 0.00 42.40 3.25
146 147 6.827586 TTCCACTTTGGTGTATCAAATACC 57.172 37.500 0.00 0.00 41.53 2.73
149 150 8.531146 CCTAAATTCCACTTTGGTGTATCAAAT 58.469 33.333 0.00 0.00 41.53 2.32
150 151 7.039363 CCCTAAATTCCACTTTGGTGTATCAAA 60.039 37.037 0.00 0.00 41.53 2.69
151 152 6.435904 CCCTAAATTCCACTTTGGTGTATCAA 59.564 38.462 0.00 0.00 41.53 2.57
152 153 5.949354 CCCTAAATTCCACTTTGGTGTATCA 59.051 40.000 0.00 0.00 41.53 2.15
153 154 5.163550 GCCCTAAATTCCACTTTGGTGTATC 60.164 44.000 0.00 0.00 41.53 2.24
154 155 4.709886 GCCCTAAATTCCACTTTGGTGTAT 59.290 41.667 0.00 0.00 41.53 2.29
155 156 4.083565 GCCCTAAATTCCACTTTGGTGTA 58.916 43.478 0.00 0.00 41.53 2.90
156 157 2.897326 GCCCTAAATTCCACTTTGGTGT 59.103 45.455 0.00 0.00 41.53 4.16
157 158 2.233676 GGCCCTAAATTCCACTTTGGTG 59.766 50.000 0.00 0.00 39.03 4.17
158 159 2.111792 AGGCCCTAAATTCCACTTTGGT 59.888 45.455 0.00 0.00 39.03 3.67
159 160 2.760650 GAGGCCCTAAATTCCACTTTGG 59.239 50.000 0.00 0.00 39.43 3.28
160 161 3.701664 AGAGGCCCTAAATTCCACTTTG 58.298 45.455 0.00 0.00 0.00 2.77
161 162 4.404185 AAGAGGCCCTAAATTCCACTTT 57.596 40.909 0.00 0.00 28.63 2.66
162 163 4.089361 CAAAGAGGCCCTAAATTCCACTT 58.911 43.478 0.00 0.00 33.29 3.16
163 164 3.333680 TCAAAGAGGCCCTAAATTCCACT 59.666 43.478 0.00 0.00 0.00 4.00
164 165 3.697166 TCAAAGAGGCCCTAAATTCCAC 58.303 45.455 0.00 0.00 0.00 4.02
165 166 4.608170 ATCAAAGAGGCCCTAAATTCCA 57.392 40.909 0.00 0.00 0.00 3.53
166 167 4.036852 CGAATCAAAGAGGCCCTAAATTCC 59.963 45.833 0.00 0.00 0.00 3.01
167 168 4.640647 ACGAATCAAAGAGGCCCTAAATTC 59.359 41.667 0.00 6.19 0.00 2.17
168 169 4.600062 ACGAATCAAAGAGGCCCTAAATT 58.400 39.130 0.00 0.00 0.00 1.82
169 170 4.236527 ACGAATCAAAGAGGCCCTAAAT 57.763 40.909 0.00 0.00 0.00 1.40
170 171 3.713826 ACGAATCAAAGAGGCCCTAAA 57.286 42.857 0.00 0.00 0.00 1.85
171 172 3.134081 CCTACGAATCAAAGAGGCCCTAA 59.866 47.826 0.00 0.00 0.00 2.69
172 173 2.698797 CCTACGAATCAAAGAGGCCCTA 59.301 50.000 0.00 0.00 0.00 3.53
173 174 1.486726 CCTACGAATCAAAGAGGCCCT 59.513 52.381 0.00 0.00 0.00 5.19
174 175 1.485066 TCCTACGAATCAAAGAGGCCC 59.515 52.381 0.00 0.00 0.00 5.80
175 176 2.981859 TCCTACGAATCAAAGAGGCC 57.018 50.000 0.00 0.00 0.00 5.19
176 177 5.819825 AAAATCCTACGAATCAAAGAGGC 57.180 39.130 0.00 0.00 0.00 4.70
179 180 9.601971 CGTTTTTAAAATCCTACGAATCAAAGA 57.398 29.630 14.69 0.00 0.00 2.52
180 181 9.389570 ACGTTTTTAAAATCCTACGAATCAAAG 57.610 29.630 22.81 2.15 33.60 2.77
183 184 9.421806 TCTACGTTTTTAAAATCCTACGAATCA 57.578 29.630 22.81 9.09 33.60 2.57
230 231 3.058160 AAGTCGGCATGCCACTGC 61.058 61.111 34.93 20.63 41.53 4.40
231 232 1.236616 TTCAAGTCGGCATGCCACTG 61.237 55.000 34.93 25.34 35.37 3.66
232 233 0.322816 ATTCAAGTCGGCATGCCACT 60.323 50.000 34.93 30.07 35.37 4.00
233 234 0.099436 GATTCAAGTCGGCATGCCAC 59.901 55.000 34.93 28.55 35.37 5.01
234 235 1.031571 GGATTCAAGTCGGCATGCCA 61.032 55.000 34.93 19.88 35.37 4.92
235 236 0.749454 AGGATTCAAGTCGGCATGCC 60.749 55.000 27.67 27.67 0.00 4.40
236 237 1.953559 TAGGATTCAAGTCGGCATGC 58.046 50.000 9.90 9.90 0.00 4.06
237 238 4.021104 TCCTATAGGATTCAAGTCGGCATG 60.021 45.833 18.00 0.00 39.78 4.06
238 239 4.160329 TCCTATAGGATTCAAGTCGGCAT 58.840 43.478 18.00 0.00 39.78 4.40
239 240 3.572642 TCCTATAGGATTCAAGTCGGCA 58.427 45.455 18.00 0.00 39.78 5.69
252 253 7.445121 TCAAACACTCATTGCTATCCTATAGG 58.555 38.462 13.07 13.07 0.00 2.57
253 254 8.933807 CATCAAACACTCATTGCTATCCTATAG 58.066 37.037 0.00 0.00 0.00 1.31
254 255 7.879677 CCATCAAACACTCATTGCTATCCTATA 59.120 37.037 0.00 0.00 0.00 1.31
255 256 6.713903 CCATCAAACACTCATTGCTATCCTAT 59.286 38.462 0.00 0.00 0.00 2.57
256 257 6.057533 CCATCAAACACTCATTGCTATCCTA 58.942 40.000 0.00 0.00 0.00 2.94
257 258 4.885907 CCATCAAACACTCATTGCTATCCT 59.114 41.667 0.00 0.00 0.00 3.24
258 259 4.498682 GCCATCAAACACTCATTGCTATCC 60.499 45.833 0.00 0.00 0.00 2.59
259 260 4.096833 TGCCATCAAACACTCATTGCTATC 59.903 41.667 0.00 0.00 0.00 2.08
260 261 4.018490 TGCCATCAAACACTCATTGCTAT 58.982 39.130 0.00 0.00 0.00 2.97
261 262 3.191162 GTGCCATCAAACACTCATTGCTA 59.809 43.478 0.00 0.00 33.92 3.49
262 263 2.029649 GTGCCATCAAACACTCATTGCT 60.030 45.455 0.00 0.00 33.92 3.91
263 264 2.288334 TGTGCCATCAAACACTCATTGC 60.288 45.455 0.00 0.00 37.68 3.56
264 265 3.253921 TCTGTGCCATCAAACACTCATTG 59.746 43.478 0.00 0.00 37.68 2.82
265 266 3.489355 TCTGTGCCATCAAACACTCATT 58.511 40.909 0.00 0.00 37.68 2.57
266 267 3.144657 TCTGTGCCATCAAACACTCAT 57.855 42.857 0.00 0.00 37.68 2.90
267 268 2.636647 TCTGTGCCATCAAACACTCA 57.363 45.000 0.00 0.00 37.68 3.41
268 269 3.988379 TTTCTGTGCCATCAAACACTC 57.012 42.857 0.00 0.00 37.68 3.51
269 270 4.734398 TTTTTCTGTGCCATCAAACACT 57.266 36.364 0.00 0.00 37.68 3.55
307 308 9.136323 GGAAATATAACATCCACTCCAATCTTT 57.864 33.333 0.00 0.00 33.30 2.52
308 309 8.506083 AGGAAATATAACATCCACTCCAATCTT 58.494 33.333 5.06 0.00 35.62 2.40
309 310 8.050316 AGGAAATATAACATCCACTCCAATCT 57.950 34.615 5.06 0.00 35.62 2.40
310 311 9.220767 GTAGGAAATATAACATCCACTCCAATC 57.779 37.037 5.06 0.00 35.62 2.67
311 312 7.878127 CGTAGGAAATATAACATCCACTCCAAT 59.122 37.037 5.06 0.00 35.62 3.16
312 313 7.070198 TCGTAGGAAATATAACATCCACTCCAA 59.930 37.037 5.06 0.00 35.62 3.53
313 314 6.551975 TCGTAGGAAATATAACATCCACTCCA 59.448 38.462 5.06 0.00 35.62 3.86
314 315 6.989659 TCGTAGGAAATATAACATCCACTCC 58.010 40.000 5.06 0.00 35.62 3.85
315 316 8.882415 TTTCGTAGGAAATATAACATCCACTC 57.118 34.615 6.50 0.00 37.24 3.51
335 336 9.529823 TCCTATGGAATCTATACTACATTTCGT 57.470 33.333 0.00 0.00 0.00 3.85
372 373 9.478238 TCTTTTGATTCATAGGATTGAATTCCA 57.522 29.630 2.27 0.00 44.35 3.53
373 374 9.741647 GTCTTTTGATTCATAGGATTGAATTCC 57.258 33.333 2.27 0.00 44.35 3.01
374 375 9.741647 GGTCTTTTGATTCATAGGATTGAATTC 57.258 33.333 0.00 0.00 44.35 2.17
375 376 9.258629 TGGTCTTTTGATTCATAGGATTGAATT 57.741 29.630 1.60 0.00 44.35 2.17
376 377 8.827832 TGGTCTTTTGATTCATAGGATTGAAT 57.172 30.769 0.00 0.00 46.39 2.57
377 378 8.827832 ATGGTCTTTTGATTCATAGGATTGAA 57.172 30.769 0.00 0.00 39.77 2.69
378 379 8.827832 AATGGTCTTTTGATTCATAGGATTGA 57.172 30.769 0.00 0.00 0.00 2.57
444 445 9.598517 GCACCTTTGATTCAATGGAATTTTATA 57.401 29.630 28.63 0.00 43.69 0.98
445 446 7.553760 GGCACCTTTGATTCAATGGAATTTTAT 59.446 33.333 28.63 9.44 43.69 1.40
446 447 6.878389 GGCACCTTTGATTCAATGGAATTTTA 59.122 34.615 28.63 0.89 43.69 1.52
447 448 5.706833 GGCACCTTTGATTCAATGGAATTTT 59.293 36.000 28.63 10.59 43.69 1.82
448 449 5.247862 GGCACCTTTGATTCAATGGAATTT 58.752 37.500 28.63 10.88 43.69 1.82
449 450 4.835678 GGCACCTTTGATTCAATGGAATT 58.164 39.130 28.63 11.17 43.69 2.17
450 451 4.476628 GGCACCTTTGATTCAATGGAAT 57.523 40.909 28.63 11.75 46.27 3.01
451 452 3.959535 GGCACCTTTGATTCAATGGAA 57.040 42.857 28.63 3.79 39.91 3.53
467 468 0.537371 ACACCACAAGCTAAGGGCAC 60.537 55.000 0.00 0.00 44.79 5.01
468 469 0.537143 CACACCACAAGCTAAGGGCA 60.537 55.000 0.00 0.00 44.79 5.36
469 470 0.537371 ACACACCACAAGCTAAGGGC 60.537 55.000 0.00 0.00 42.19 5.19
470 471 1.523758 GACACACCACAAGCTAAGGG 58.476 55.000 0.00 0.00 0.00 3.95
471 472 1.202758 TGGACACACCACAAGCTAAGG 60.203 52.381 0.00 0.00 44.64 2.69
472 473 2.146342 CTGGACACACCACAAGCTAAG 58.854 52.381 0.00 0.00 44.64 2.18
473 474 1.202758 CCTGGACACACCACAAGCTAA 60.203 52.381 0.00 0.00 44.64 3.09
474 475 0.396435 CCTGGACACACCACAAGCTA 59.604 55.000 0.00 0.00 44.64 3.32
475 476 1.149174 CCTGGACACACCACAAGCT 59.851 57.895 0.00 0.00 44.64 3.74
476 477 2.555547 GCCTGGACACACCACAAGC 61.556 63.158 0.00 0.00 44.64 4.01
477 478 0.466189 AAGCCTGGACACACCACAAG 60.466 55.000 0.00 0.00 44.64 3.16
478 479 0.033601 AAAGCCTGGACACACCACAA 60.034 50.000 0.00 0.00 44.64 3.33
479 480 0.840617 TAAAGCCTGGACACACCACA 59.159 50.000 0.00 0.00 44.64 4.17
480 481 1.523758 CTAAAGCCTGGACACACCAC 58.476 55.000 0.00 0.00 44.64 4.16
481 482 0.250727 GCTAAAGCCTGGACACACCA 60.251 55.000 0.00 0.00 46.83 4.17
482 483 0.250727 TGCTAAAGCCTGGACACACC 60.251 55.000 0.00 0.00 41.18 4.16
483 484 1.604604 TTGCTAAAGCCTGGACACAC 58.395 50.000 0.00 0.00 41.18 3.82
484 485 2.436417 GATTGCTAAAGCCTGGACACA 58.564 47.619 0.00 0.00 41.18 3.72
485 486 1.398390 CGATTGCTAAAGCCTGGACAC 59.602 52.381 0.00 0.00 41.18 3.67
486 487 1.678728 CCGATTGCTAAAGCCTGGACA 60.679 52.381 0.00 0.00 41.18 4.02
487 488 1.017387 CCGATTGCTAAAGCCTGGAC 58.983 55.000 0.00 0.00 41.18 4.02
488 489 0.748005 GCCGATTGCTAAAGCCTGGA 60.748 55.000 0.00 0.00 41.18 3.86
489 490 1.729881 GCCGATTGCTAAAGCCTGG 59.270 57.895 0.00 0.00 41.18 4.45
518 519 4.308458 TTCACGGTCACGGGCAGG 62.308 66.667 0.00 0.00 44.98 4.85
519 520 2.989055 AAGTTCACGGTCACGGGCAG 62.989 60.000 0.00 0.00 44.98 4.85
520 521 1.746322 TAAGTTCACGGTCACGGGCA 61.746 55.000 0.00 0.00 44.98 5.36
521 522 1.005867 TAAGTTCACGGTCACGGGC 60.006 57.895 0.00 0.00 44.98 6.13
523 524 0.319211 TGCTAAGTTCACGGTCACGG 60.319 55.000 0.00 0.00 46.48 4.94
524 525 1.602165 ACTGCTAAGTTCACGGTCACG 60.602 52.381 0.00 0.00 38.91 4.35
525 526 2.150397 ACTGCTAAGTTCACGGTCAC 57.850 50.000 0.00 0.00 30.14 3.67
526 527 2.889045 AGTACTGCTAAGTTCACGGTCA 59.111 45.455 0.00 0.00 37.88 4.02
527 528 3.572604 AGTACTGCTAAGTTCACGGTC 57.427 47.619 0.00 0.00 37.88 4.79
528 529 3.554337 CCAAGTACTGCTAAGTTCACGGT 60.554 47.826 0.00 0.00 37.88 4.83
529 530 2.993899 CCAAGTACTGCTAAGTTCACGG 59.006 50.000 0.00 0.00 37.88 4.94
530 531 2.993899 CCCAAGTACTGCTAAGTTCACG 59.006 50.000 0.00 0.00 37.88 4.35
531 532 2.742589 GCCCAAGTACTGCTAAGTTCAC 59.257 50.000 0.00 0.00 37.88 3.18
532 533 2.290071 GGCCCAAGTACTGCTAAGTTCA 60.290 50.000 0.00 0.00 37.88 3.18
533 534 2.357075 GGCCCAAGTACTGCTAAGTTC 58.643 52.381 0.00 0.00 37.88 3.01
534 535 1.004394 GGGCCCAAGTACTGCTAAGTT 59.996 52.381 19.95 0.00 37.88 2.66
535 536 0.618981 GGGCCCAAGTACTGCTAAGT 59.381 55.000 19.95 0.00 40.67 2.24
536 537 0.912486 AGGGCCCAAGTACTGCTAAG 59.088 55.000 27.56 0.00 0.00 2.18
537 538 1.004277 CAAGGGCCCAAGTACTGCTAA 59.996 52.381 27.56 0.00 0.00 3.09
538 539 0.618458 CAAGGGCCCAAGTACTGCTA 59.382 55.000 27.56 0.00 0.00 3.49
539 540 1.380302 CAAGGGCCCAAGTACTGCT 59.620 57.895 27.56 0.00 0.00 4.24
540 541 0.960861 GACAAGGGCCCAAGTACTGC 60.961 60.000 27.56 5.92 0.00 4.40
541 542 0.693049 AGACAAGGGCCCAAGTACTG 59.307 55.000 27.56 13.09 0.00 2.74
542 543 0.984995 GAGACAAGGGCCCAAGTACT 59.015 55.000 27.56 18.90 0.00 2.73
543 544 0.984995 AGAGACAAGGGCCCAAGTAC 59.015 55.000 27.56 17.72 0.00 2.73
544 545 1.742308 AAGAGACAAGGGCCCAAGTA 58.258 50.000 27.56 0.00 0.00 2.24
545 546 0.853530 AAAGAGACAAGGGCCCAAGT 59.146 50.000 27.56 22.29 0.00 3.16
546 547 1.202927 TGAAAGAGACAAGGGCCCAAG 60.203 52.381 27.56 18.74 0.00 3.61
547 548 0.850100 TGAAAGAGACAAGGGCCCAA 59.150 50.000 27.56 0.00 0.00 4.12
548 549 0.401738 CTGAAAGAGACAAGGGCCCA 59.598 55.000 27.56 0.00 34.07 5.36
549 550 0.322906 CCTGAAAGAGACAAGGGCCC 60.323 60.000 16.46 16.46 34.07 5.80
550 551 0.322906 CCCTGAAAGAGACAAGGGCC 60.323 60.000 0.00 0.00 34.07 5.80
551 552 3.256281 CCCTGAAAGAGACAAGGGC 57.744 57.895 0.00 0.00 34.07 5.19
552 553 0.322906 GGCCCTGAAAGAGACAAGGG 60.323 60.000 2.05 2.05 39.47 3.95
553 554 0.674895 CGGCCCTGAAAGAGACAAGG 60.675 60.000 0.00 0.00 34.07 3.61
554 555 0.321671 TCGGCCCTGAAAGAGACAAG 59.678 55.000 0.00 0.00 34.07 3.16
555 556 0.762418 TTCGGCCCTGAAAGAGACAA 59.238 50.000 0.00 0.00 34.07 3.18
556 557 0.034896 GTTCGGCCCTGAAAGAGACA 59.965 55.000 0.00 0.00 34.07 3.41
557 558 0.673956 GGTTCGGCCCTGAAAGAGAC 60.674 60.000 0.00 0.00 34.07 3.36
558 559 0.836400 AGGTTCGGCCCTGAAAGAGA 60.836 55.000 0.00 0.00 38.26 3.10
559 560 0.902531 TAGGTTCGGCCCTGAAAGAG 59.097 55.000 0.00 0.00 38.26 2.85
560 561 0.902531 CTAGGTTCGGCCCTGAAAGA 59.097 55.000 0.00 0.00 38.26 2.52
561 562 0.902531 TCTAGGTTCGGCCCTGAAAG 59.097 55.000 0.00 0.00 38.26 2.62
562 563 1.354101 TTCTAGGTTCGGCCCTGAAA 58.646 50.000 0.00 0.00 38.26 2.69
563 564 1.485066 GATTCTAGGTTCGGCCCTGAA 59.515 52.381 0.00 0.00 38.26 3.02
564 565 1.120530 GATTCTAGGTTCGGCCCTGA 58.879 55.000 0.00 0.00 38.26 3.86
565 566 1.123928 AGATTCTAGGTTCGGCCCTG 58.876 55.000 0.00 0.00 38.26 4.45
566 567 1.123928 CAGATTCTAGGTTCGGCCCT 58.876 55.000 0.00 0.00 38.26 5.19
567 568 0.831307 ACAGATTCTAGGTTCGGCCC 59.169 55.000 0.00 0.00 38.26 5.80
568 569 2.429610 TGTACAGATTCTAGGTTCGGCC 59.570 50.000 0.00 0.00 37.58 6.13
569 570 3.707793 CTGTACAGATTCTAGGTTCGGC 58.292 50.000 18.45 0.00 0.00 5.54
570 571 3.707793 GCTGTACAGATTCTAGGTTCGG 58.292 50.000 27.08 0.00 0.00 4.30
571 572 3.364062 CGCTGTACAGATTCTAGGTTCG 58.636 50.000 27.08 11.89 0.00 3.95
572 573 3.117046 GCGCTGTACAGATTCTAGGTTC 58.883 50.000 27.08 3.51 0.00 3.62
573 574 2.159085 GGCGCTGTACAGATTCTAGGTT 60.159 50.000 27.08 0.00 0.00 3.50
574 575 1.409427 GGCGCTGTACAGATTCTAGGT 59.591 52.381 27.08 0.00 0.00 3.08
575 576 1.600663 CGGCGCTGTACAGATTCTAGG 60.601 57.143 27.08 6.67 0.00 3.02
576 577 1.759994 CGGCGCTGTACAGATTCTAG 58.240 55.000 27.08 10.15 0.00 2.43
577 578 0.248907 GCGGCGCTGTACAGATTCTA 60.249 55.000 27.08 0.00 0.00 2.10
578 579 1.519455 GCGGCGCTGTACAGATTCT 60.519 57.895 27.08 0.00 0.00 2.40
579 580 1.809619 TGCGGCGCTGTACAGATTC 60.810 57.895 33.26 13.10 0.00 2.52
580 581 2.100631 GTGCGGCGCTGTACAGATT 61.101 57.895 33.26 0.00 0.00 2.40
581 582 2.509336 GTGCGGCGCTGTACAGAT 60.509 61.111 33.26 0.00 0.00 2.90
582 583 4.735132 GGTGCGGCGCTGTACAGA 62.735 66.667 33.53 7.71 0.00 3.41
586 587 4.308458 AACTGGTGCGGCGCTGTA 62.308 61.111 33.26 11.31 0.00 2.74
591 592 3.414700 GACTGAACTGGTGCGGCG 61.415 66.667 0.51 0.51 0.00 6.46
615 616 0.611896 AGGAAAAGAACGGCCATGGG 60.612 55.000 15.13 0.00 0.00 4.00
698 704 2.022428 TGGACAGGTGGTATATCTGGGT 60.022 50.000 0.00 0.00 42.07 4.51
716 731 1.512996 GATCGAGATACGCCGGTGGA 61.513 60.000 21.14 12.40 42.26 4.02
718 733 1.440518 CGATCGAGATACGCCGGTG 60.441 63.158 14.93 14.93 42.26 4.94
721 736 2.502080 GCCGATCGAGATACGCCG 60.502 66.667 18.66 0.00 42.26 6.46
722 737 1.442857 CAGCCGATCGAGATACGCC 60.443 63.158 18.66 0.00 42.26 5.68
741 757 4.318021 GTGCGGTGCAGTGCAGTG 62.318 66.667 20.42 17.56 42.68 3.66
742 758 4.552365 AGTGCGGTGCAGTGCAGT 62.552 61.111 20.42 13.03 41.01 4.40
860 880 1.749258 GTGGCGGGGGAGAATCAAC 60.749 63.158 0.00 0.00 36.25 3.18
965 987 3.061674 CACGCGACGAGTTAGTGC 58.938 61.111 15.93 0.00 0.00 4.40
966 988 2.434134 GGCACGCGACGAGTTAGTG 61.434 63.158 15.93 0.00 36.05 2.74
1197 1233 2.160205 CACACGGGAGTACAGAGAAGA 58.840 52.381 0.00 0.00 44.67 2.87
1200 1239 0.251209 AGCACACGGGAGTACAGAGA 60.251 55.000 0.00 0.00 44.67 3.10
1211 1250 2.579787 GGATCGACGAGCACACGG 60.580 66.667 15.82 0.00 37.61 4.94
1332 1380 0.035820 TTACGGTGGTTCCAGATGCC 60.036 55.000 0.00 0.00 35.57 4.40
1333 1381 1.338769 ACTTACGGTGGTTCCAGATGC 60.339 52.381 0.00 0.00 35.57 3.91
1363 1411 0.533755 GGGATGGACCTGAATCGCAG 60.534 60.000 0.00 0.00 44.49 5.18
1364 1412 0.982852 AGGGATGGACCTGAATCGCA 60.983 55.000 9.24 0.00 40.04 5.10
1365 1413 1.832912 AGGGATGGACCTGAATCGC 59.167 57.895 0.00 0.00 40.04 4.58
1372 1420 2.611964 ATCGAGGCAGGGATGGACCT 62.612 60.000 0.00 0.00 43.08 3.85
1373 1421 1.700042 AATCGAGGCAGGGATGGACC 61.700 60.000 0.00 0.00 38.08 4.46
1374 1422 0.250081 GAATCGAGGCAGGGATGGAC 60.250 60.000 0.00 0.00 0.00 4.02
1375 1423 1.410850 GGAATCGAGGCAGGGATGGA 61.411 60.000 0.00 0.00 0.00 3.41
1376 1424 1.072159 GGAATCGAGGCAGGGATGG 59.928 63.158 0.00 0.00 0.00 3.51
1390 1438 0.525668 GTGCACGATCGACGAGGAAT 60.526 55.000 24.34 0.00 45.77 3.01
1391 1439 1.154093 GTGCACGATCGACGAGGAA 60.154 57.895 24.34 0.00 45.77 3.36
1394 1442 3.598562 GCGTGCACGATCGACGAG 61.599 66.667 41.19 10.87 45.77 4.18
1404 1452 2.324477 GTGTCAGTGTGCGTGCAC 59.676 61.111 17.72 17.72 46.33 4.57
1742 1794 1.855441 ATGCTGATGAGGGGTGCACA 61.855 55.000 20.43 0.00 36.44 4.57
1743 1795 1.077212 ATGCTGATGAGGGGTGCAC 60.077 57.895 8.80 8.80 36.44 4.57
1744 1796 1.225426 GATGCTGATGAGGGGTGCA 59.775 57.895 0.00 0.00 38.05 4.57
1745 1797 0.818445 CTGATGCTGATGAGGGGTGC 60.818 60.000 0.00 0.00 0.00 5.01
1746 1798 0.545171 ACTGATGCTGATGAGGGGTG 59.455 55.000 0.00 0.00 0.00 4.61
1747 1799 1.211457 GAACTGATGCTGATGAGGGGT 59.789 52.381 0.00 0.00 0.00 4.95
1748 1800 1.211212 TGAACTGATGCTGATGAGGGG 59.789 52.381 0.00 0.00 0.00 4.79
1749 1801 2.093075 AGTGAACTGATGCTGATGAGGG 60.093 50.000 0.00 0.00 0.00 4.30
1750 1802 3.263489 AGTGAACTGATGCTGATGAGG 57.737 47.619 0.00 0.00 0.00 3.86
1751 1803 4.251268 TGAAGTGAACTGATGCTGATGAG 58.749 43.478 0.00 0.00 0.00 2.90
1752 1804 4.276058 TGAAGTGAACTGATGCTGATGA 57.724 40.909 0.00 0.00 0.00 2.92
1753 1805 5.816258 AGTATGAAGTGAACTGATGCTGATG 59.184 40.000 0.00 0.00 0.00 3.07
1760 1812 5.186603 TGCTGAGAGTATGAAGTGAACTGAT 59.813 40.000 0.00 0.00 0.00 2.90
1772 1824 5.466058 GGTGAATGAGATTGCTGAGAGTATG 59.534 44.000 0.00 0.00 0.00 2.39
1773 1825 5.609423 GGTGAATGAGATTGCTGAGAGTAT 58.391 41.667 0.00 0.00 0.00 2.12
1774 1826 4.440663 CGGTGAATGAGATTGCTGAGAGTA 60.441 45.833 0.00 0.00 0.00 2.59
1782 1834 0.379669 CAGCCGGTGAATGAGATTGC 59.620 55.000 1.90 0.00 0.00 3.56
1911 1967 1.089920 CGAAGCCCATGAACCAGAAG 58.910 55.000 0.00 0.00 0.00 2.85
2038 2100 3.491652 GCCGCTGCCGAAGAACTC 61.492 66.667 0.00 0.00 36.29 3.01
2052 2114 1.226974 CGGTGACAGGATAGTGCCG 60.227 63.158 0.00 0.00 32.85 5.69
2069 2131 5.461526 TGAAGTAGAAACACTGATCAGTCG 58.538 41.667 25.58 21.10 40.20 4.18
2085 2147 3.520290 TGCGGTACAGGAATGAAGTAG 57.480 47.619 0.00 0.00 0.00 2.57
2143 2208 8.365647 CGGAGGTTTATTGGTGTCTTATAGTAT 58.634 37.037 0.00 0.00 0.00 2.12
2144 2209 7.342799 ACGGAGGTTTATTGGTGTCTTATAGTA 59.657 37.037 0.00 0.00 0.00 1.82
2145 2210 6.155737 ACGGAGGTTTATTGGTGTCTTATAGT 59.844 38.462 0.00 0.00 0.00 2.12
2146 2211 6.579865 ACGGAGGTTTATTGGTGTCTTATAG 58.420 40.000 0.00 0.00 0.00 1.31
2164 2229 2.432628 GACGACAGGCAACGGAGG 60.433 66.667 0.00 0.00 46.39 4.30
2188 2257 0.530431 CTTGGTGCAAAGTGGTTGGC 60.530 55.000 0.00 0.00 37.73 4.52
2199 2268 5.031066 AGTAGTAACACTTTCTTGGTGCA 57.969 39.130 0.00 0.00 38.14 4.57
2223 2292 0.528466 CCGGCGCTGCATATATCGAT 60.528 55.000 11.81 2.16 0.00 3.59
2225 2294 0.528466 ATCCGGCGCTGCATATATCG 60.528 55.000 11.81 0.00 0.00 2.92
2226 2295 2.509052 TATCCGGCGCTGCATATATC 57.491 50.000 11.81 0.00 0.00 1.63
2227 2296 2.548707 CCATATCCGGCGCTGCATATAT 60.549 50.000 12.30 10.82 0.00 0.86
2228 2297 1.202521 CCATATCCGGCGCTGCATATA 60.203 52.381 12.30 9.09 0.00 0.86
2232 2305 1.540435 TATCCATATCCGGCGCTGCA 61.540 55.000 11.81 0.00 0.00 4.41
2325 2447 3.181501 GCATCCATACTAAAAGTTGCGCA 60.182 43.478 5.66 5.66 0.00 6.09
2525 2650 7.149462 GCTACGTAACGTTGTTGTAAATTGTTC 60.149 37.037 11.99 0.00 41.54 3.18
2526 2651 6.628461 GCTACGTAACGTTGTTGTAAATTGTT 59.372 34.615 11.99 0.00 41.54 2.83
2527 2652 6.128729 GCTACGTAACGTTGTTGTAAATTGT 58.871 36.000 11.99 0.00 41.54 2.71
2528 2653 6.128066 TGCTACGTAACGTTGTTGTAAATTG 58.872 36.000 11.99 0.98 41.54 2.32
2547 2672 1.659211 CGACGGCAACAGTTTTGCTAC 60.659 52.381 13.40 5.14 44.36 3.58
2577 2714 7.946207 TGATGAACTCTATACAGACCAAGATC 58.054 38.462 0.00 0.00 0.00 2.75
2617 2769 2.728817 CTCCGTCCGCCATACCTC 59.271 66.667 0.00 0.00 0.00 3.85
2618 2770 3.537874 GCTCCGTCCGCCATACCT 61.538 66.667 0.00 0.00 0.00 3.08
2619 2771 3.537874 AGCTCCGTCCGCCATACC 61.538 66.667 0.00 0.00 0.00 2.73
2620 2772 2.279517 CAGCTCCGTCCGCCATAC 60.280 66.667 0.00 0.00 0.00 2.39
2632 2784 0.592247 CGTGCACAAACCAACAGCTC 60.592 55.000 18.64 0.00 0.00 4.09
2633 2785 1.312371 ACGTGCACAAACCAACAGCT 61.312 50.000 18.64 0.00 0.00 4.24
2635 2787 0.449786 TCACGTGCACAAACCAACAG 59.550 50.000 18.64 0.00 0.00 3.16
2636 2788 0.881796 TTCACGTGCACAAACCAACA 59.118 45.000 18.64 0.00 0.00 3.33
2637 2789 1.135517 AGTTCACGTGCACAAACCAAC 60.136 47.619 20.25 11.99 0.00 3.77
2638 2790 1.131504 GAGTTCACGTGCACAAACCAA 59.868 47.619 20.25 0.00 0.00 3.67
2639 2791 0.730265 GAGTTCACGTGCACAAACCA 59.270 50.000 20.25 0.00 0.00 3.67
2640 2792 0.315869 CGAGTTCACGTGCACAAACC 60.316 55.000 20.25 10.30 0.00 3.27
2641 2793 0.923911 GCGAGTTCACGTGCACAAAC 60.924 55.000 20.25 16.65 35.59 2.93
2642 2794 1.350319 GCGAGTTCACGTGCACAAA 59.650 52.632 20.25 4.90 35.59 2.83
2643 2795 2.866010 CGCGAGTTCACGTGCACAA 61.866 57.895 20.25 2.42 37.00 3.33
2644 2796 3.326981 CGCGAGTTCACGTGCACA 61.327 61.111 20.25 0.00 37.00 4.57
2645 2797 3.028019 TCGCGAGTTCACGTGCAC 61.028 61.111 11.67 11.06 42.37 4.57
2646 2798 3.028019 GTCGCGAGTTCACGTGCA 61.028 61.111 10.24 0.00 42.37 4.57
2647 2799 4.104633 CGTCGCGAGTTCACGTGC 62.105 66.667 10.24 0.00 42.37 5.34
2648 2800 2.426261 TCGTCGCGAGTTCACGTG 60.426 61.111 10.24 9.94 43.69 4.49
2664 2816 2.409870 CCACCAATTGGCCGAGCTC 61.410 63.158 24.79 2.73 39.07 4.09
2673 2825 2.428902 CGCACGCACCACCAATTG 60.429 61.111 0.00 0.00 0.00 2.32
2676 2828 3.538785 ATACCGCACGCACCACCAA 62.539 57.895 0.00 0.00 0.00 3.67
2687 2842 2.740440 CCGCACACACATACCGCA 60.740 61.111 0.00 0.00 0.00 5.69
2699 2854 3.440173 CCATCCATCAATTATACCCGCAC 59.560 47.826 0.00 0.00 0.00 5.34
2700 2855 3.329225 TCCATCCATCAATTATACCCGCA 59.671 43.478 0.00 0.00 0.00 5.69
2701 2856 3.950397 TCCATCCATCAATTATACCCGC 58.050 45.455 0.00 0.00 0.00 6.13
2702 2857 4.883585 CCATCCATCCATCAATTATACCCG 59.116 45.833 0.00 0.00 0.00 5.28
2727 2895 2.275089 CATTGATCCGGCCCACCA 59.725 61.111 0.00 0.00 34.57 4.17


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.