Multiple sequence alignment - TraesCS4B01G066500

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G066500 chr4B 100.000 3745 0 0 1 3745 59238972 59235228 0.000000e+00 6916.0
1 TraesCS4B01G066500 chr4B 89.490 647 42 9 2137 2778 59227380 59226755 0.000000e+00 795.0
2 TraesCS4B01G066500 chr4B 80.505 277 49 3 3357 3630 546729725 546729451 1.360000e-49 207.0
3 TraesCS4B01G066500 chr4A 87.573 2921 208 64 133 2973 559070314 559067469 0.000000e+00 3240.0
4 TraesCS4B01G066500 chr4A 79.496 278 50 5 3357 3630 631374905 631374631 1.370000e-44 191.0
5 TraesCS4B01G066500 chr4D 91.452 1942 104 31 965 2889 40569404 40567508 0.000000e+00 2610.0
6 TraesCS4B01G066500 chr4D 83.961 611 39 26 313 905 40569998 40569429 7.120000e-147 531.0
7 TraesCS4B01G066500 chr4D 77.514 547 88 15 3227 3745 40567165 40566626 2.830000e-76 296.0
8 TraesCS4B01G066500 chr4D 78.909 275 54 4 3359 3630 11908437 11908164 2.300000e-42 183.0
9 TraesCS4B01G066500 chr2B 85.476 1618 202 13 1126 2740 454824064 454825651 0.000000e+00 1655.0
10 TraesCS4B01G066500 chr2A 85.399 1630 195 17 1117 2738 6509738 6511332 0.000000e+00 1652.0
11 TraesCS4B01G066500 chr2A 83.026 542 71 16 2189 2722 6968581 6969109 4.380000e-129 472.0
12 TraesCS4B01G066500 chr1B 82.759 464 77 2 2234 2694 223146108 223145645 9.680000e-111 411.0
13 TraesCS4B01G066500 chr1D 82.581 465 76 4 2234 2694 159905744 159906207 4.500000e-109 405.0
14 TraesCS4B01G066500 chr1D 81.818 77 14 0 1188 1264 379784581 379784657 8.680000e-07 65.8
15 TraesCS4B01G066500 chr1A 82.328 464 79 2 2234 2694 234798915 234799378 2.100000e-107 399.0
16 TraesCS4B01G066500 chr1A 77.273 308 61 8 3403 3709 99740913 99741212 4.970000e-39 172.0
17 TraesCS4B01G066500 chr1A 76.087 138 29 4 1188 1323 480809099 480809234 6.710000e-08 69.4
18 TraesCS4B01G066500 chr3A 80.374 321 48 15 3366 3678 739691705 739692018 2.910000e-56 230.0
19 TraesCS4B01G066500 chr2D 80.000 320 48 11 3368 3678 83811855 83811543 4.870000e-54 222.0
20 TraesCS4B01G066500 chr7D 77.540 374 79 4 3366 3739 254327158 254326790 1.750000e-53 220.0
21 TraesCS4B01G066500 chr7D 76.994 326 60 13 3359 3678 96503422 96503738 4.970000e-39 172.0
22 TraesCS4B01G066500 chr3B 85.417 144 21 0 1751 1894 47197603 47197746 2.330000e-32 150.0
23 TraesCS4B01G066500 chr7A 79.787 94 15 4 3207 3299 538958029 538958119 8.680000e-07 65.8
24 TraesCS4B01G066500 chr5B 88.462 52 6 0 3227 3278 57705336 57705387 3.120000e-06 63.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G066500 chr4B 59235228 59238972 3744 True 6916.000000 6916 100.000 1 3745 1 chr4B.!!$R2 3744
1 TraesCS4B01G066500 chr4B 59226755 59227380 625 True 795.000000 795 89.490 2137 2778 1 chr4B.!!$R1 641
2 TraesCS4B01G066500 chr4A 559067469 559070314 2845 True 3240.000000 3240 87.573 133 2973 1 chr4A.!!$R1 2840
3 TraesCS4B01G066500 chr4D 40566626 40569998 3372 True 1145.666667 2610 84.309 313 3745 3 chr4D.!!$R2 3432
4 TraesCS4B01G066500 chr2B 454824064 454825651 1587 False 1655.000000 1655 85.476 1126 2740 1 chr2B.!!$F1 1614
5 TraesCS4B01G066500 chr2A 6509738 6511332 1594 False 1652.000000 1652 85.399 1117 2738 1 chr2A.!!$F1 1621
6 TraesCS4B01G066500 chr2A 6968581 6969109 528 False 472.000000 472 83.026 2189 2722 1 chr2A.!!$F2 533

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
907 961 0.248743 TTCTTCTATACGCCCGCACG 60.249 55.0 0.0 0.0 39.5 5.34 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2794 2907 0.038744 CCTTCCTTGATGGTGCTGGT 59.961 55.0 0.0 0.0 37.07 4.0 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 4.164843 GAGCATCTTATACCCCAAACCA 57.835 45.455 0.00 0.00 0.00 3.67
27 28 4.137543 GAGCATCTTATACCCCAAACCAG 58.862 47.826 0.00 0.00 0.00 4.00
28 29 2.623416 GCATCTTATACCCCAAACCAGC 59.377 50.000 0.00 0.00 0.00 4.85
29 30 3.688414 GCATCTTATACCCCAAACCAGCT 60.688 47.826 0.00 0.00 0.00 4.24
30 31 3.926058 TCTTATACCCCAAACCAGCTC 57.074 47.619 0.00 0.00 0.00 4.09
31 32 2.508300 TCTTATACCCCAAACCAGCTCC 59.492 50.000 0.00 0.00 0.00 4.70
32 33 1.218844 TATACCCCAAACCAGCTCCC 58.781 55.000 0.00 0.00 0.00 4.30
33 34 0.552615 ATACCCCAAACCAGCTCCCT 60.553 55.000 0.00 0.00 0.00 4.20
34 35 0.774491 TACCCCAAACCAGCTCCCTT 60.774 55.000 0.00 0.00 0.00 3.95
35 36 1.304464 CCCCAAACCAGCTCCCTTC 60.304 63.158 0.00 0.00 0.00 3.46
36 37 1.304464 CCCAAACCAGCTCCCTTCC 60.304 63.158 0.00 0.00 0.00 3.46
37 38 1.304464 CCAAACCAGCTCCCTTCCC 60.304 63.158 0.00 0.00 0.00 3.97
38 39 1.675641 CAAACCAGCTCCCTTCCCG 60.676 63.158 0.00 0.00 0.00 5.14
39 40 2.154074 AAACCAGCTCCCTTCCCGT 61.154 57.895 0.00 0.00 0.00 5.28
40 41 0.838987 AAACCAGCTCCCTTCCCGTA 60.839 55.000 0.00 0.00 0.00 4.02
41 42 1.551019 AACCAGCTCCCTTCCCGTAC 61.551 60.000 0.00 0.00 0.00 3.67
42 43 1.987855 CCAGCTCCCTTCCCGTACA 60.988 63.158 0.00 0.00 0.00 2.90
43 44 1.218316 CAGCTCCCTTCCCGTACAC 59.782 63.158 0.00 0.00 0.00 2.90
44 45 1.988406 AGCTCCCTTCCCGTACACC 60.988 63.158 0.00 0.00 0.00 4.16
45 46 1.988406 GCTCCCTTCCCGTACACCT 60.988 63.158 0.00 0.00 0.00 4.00
46 47 0.685458 GCTCCCTTCCCGTACACCTA 60.685 60.000 0.00 0.00 0.00 3.08
47 48 1.109609 CTCCCTTCCCGTACACCTAC 58.890 60.000 0.00 0.00 0.00 3.18
48 49 0.680921 TCCCTTCCCGTACACCTACG 60.681 60.000 0.00 0.00 44.62 3.51
49 50 1.140375 CCTTCCCGTACACCTACGC 59.860 63.158 0.00 0.00 43.82 4.42
50 51 1.140375 CTTCCCGTACACCTACGCC 59.860 63.158 0.00 0.00 43.82 5.68
51 52 1.304381 TTCCCGTACACCTACGCCT 60.304 57.895 0.00 0.00 43.82 5.52
52 53 1.597797 TTCCCGTACACCTACGCCTG 61.598 60.000 0.00 0.00 43.82 4.85
53 54 2.202703 CCGTACACCTACGCCTGC 60.203 66.667 0.00 0.00 43.82 4.85
54 55 2.569657 CGTACACCTACGCCTGCA 59.430 61.111 0.00 0.00 39.43 4.41
55 56 1.080366 CGTACACCTACGCCTGCAA 60.080 57.895 0.00 0.00 39.43 4.08
56 57 1.076533 CGTACACCTACGCCTGCAAG 61.077 60.000 0.00 0.00 39.43 4.01
57 58 1.079405 TACACCTACGCCTGCAAGC 60.079 57.895 0.00 0.00 0.00 4.01
58 59 2.515996 TACACCTACGCCTGCAAGCC 62.516 60.000 0.71 0.00 0.00 4.35
59 60 4.760047 ACCTACGCCTGCAAGCCG 62.760 66.667 0.71 0.04 0.00 5.52
80 81 3.483665 CGCGTGCCGATCGGAAAA 61.484 61.111 37.64 18.83 40.02 2.29
81 82 2.399611 GCGTGCCGATCGGAAAAG 59.600 61.111 37.64 24.35 37.50 2.27
82 83 2.399611 CGTGCCGATCGGAAAAGC 59.600 61.111 37.64 21.28 37.50 3.51
83 84 2.100631 CGTGCCGATCGGAAAAGCT 61.101 57.895 37.64 0.00 37.50 3.74
84 85 0.804544 CGTGCCGATCGGAAAAGCTA 60.805 55.000 37.64 10.63 37.50 3.32
85 86 0.931005 GTGCCGATCGGAAAAGCTAG 59.069 55.000 37.64 8.13 37.50 3.42
86 87 0.810031 TGCCGATCGGAAAAGCTAGC 60.810 55.000 37.64 18.32 37.50 3.42
87 88 0.810031 GCCGATCGGAAAAGCTAGCA 60.810 55.000 37.64 0.00 37.50 3.49
88 89 1.871080 CCGATCGGAAAAGCTAGCAT 58.129 50.000 30.62 0.65 37.50 3.79
89 90 2.213499 CCGATCGGAAAAGCTAGCATT 58.787 47.619 30.62 8.73 37.50 3.56
90 91 2.614057 CCGATCGGAAAAGCTAGCATTT 59.386 45.455 30.62 17.26 37.50 2.32
91 92 3.807622 CCGATCGGAAAAGCTAGCATTTA 59.192 43.478 30.62 3.56 37.50 1.40
92 93 4.318831 CCGATCGGAAAAGCTAGCATTTAC 60.319 45.833 30.62 16.66 37.50 2.01
93 94 4.508124 CGATCGGAAAAGCTAGCATTTACT 59.492 41.667 21.81 7.46 0.00 2.24
94 95 5.690409 CGATCGGAAAAGCTAGCATTTACTA 59.310 40.000 21.81 13.80 0.00 1.82
95 96 6.345882 CGATCGGAAAAGCTAGCATTTACTAC 60.346 42.308 21.81 13.09 0.00 2.73
96 97 5.974108 TCGGAAAAGCTAGCATTTACTACT 58.026 37.500 21.81 0.00 0.00 2.57
97 98 7.104043 TCGGAAAAGCTAGCATTTACTACTA 57.896 36.000 21.81 5.68 0.00 1.82
98 99 6.976925 TCGGAAAAGCTAGCATTTACTACTAC 59.023 38.462 21.81 7.55 0.00 2.73
99 100 6.074994 CGGAAAAGCTAGCATTTACTACTACG 60.075 42.308 21.81 7.84 0.00 3.51
100 101 6.755607 GGAAAAGCTAGCATTTACTACTACGT 59.244 38.462 18.29 0.00 0.00 3.57
101 102 7.277319 GGAAAAGCTAGCATTTACTACTACGTT 59.723 37.037 18.29 0.00 0.00 3.99
102 103 9.294030 GAAAAGCTAGCATTTACTACTACGTTA 57.706 33.333 17.26 0.00 0.00 3.18
103 104 9.643693 AAAAGCTAGCATTTACTACTACGTTAA 57.356 29.630 18.83 0.00 0.00 2.01
104 105 9.813446 AAAGCTAGCATTTACTACTACGTTAAT 57.187 29.630 18.83 0.00 0.00 1.40
105 106 9.813446 AAGCTAGCATTTACTACTACGTTAATT 57.187 29.630 18.83 0.00 0.00 1.40
109 110 8.566008 AGCATTTACTACTACGTTAATTACCG 57.434 34.615 0.35 0.35 0.00 4.02
110 111 7.168135 AGCATTTACTACTACGTTAATTACCGC 59.832 37.037 1.94 0.00 0.00 5.68
111 112 7.168135 GCATTTACTACTACGTTAATTACCGCT 59.832 37.037 1.94 0.00 0.00 5.52
112 113 8.685536 CATTTACTACTACGTTAATTACCGCTC 58.314 37.037 1.94 0.00 0.00 5.03
113 114 5.818136 ACTACTACGTTAATTACCGCTCA 57.182 39.130 1.94 0.00 0.00 4.26
114 115 5.573146 ACTACTACGTTAATTACCGCTCAC 58.427 41.667 1.94 0.00 0.00 3.51
115 116 3.429085 ACTACGTTAATTACCGCTCACG 58.571 45.455 1.94 3.17 39.67 4.35
116 117 2.634982 ACGTTAATTACCGCTCACGA 57.365 45.000 11.06 0.00 43.93 4.35
117 118 2.945278 ACGTTAATTACCGCTCACGAA 58.055 42.857 11.06 0.00 43.93 3.85
118 119 3.316283 ACGTTAATTACCGCTCACGAAA 58.684 40.909 11.06 0.00 43.93 3.46
119 120 3.740321 ACGTTAATTACCGCTCACGAAAA 59.260 39.130 11.06 0.00 43.93 2.29
120 121 4.389687 ACGTTAATTACCGCTCACGAAAAT 59.610 37.500 11.06 0.00 43.93 1.82
121 122 5.106987 ACGTTAATTACCGCTCACGAAAATT 60.107 36.000 11.06 0.00 43.93 1.82
122 123 5.224313 CGTTAATTACCGCTCACGAAAATTG 59.776 40.000 0.00 0.00 43.93 2.32
123 124 2.604969 TTACCGCTCACGAAAATTGC 57.395 45.000 0.00 0.00 43.93 3.56
124 125 1.803334 TACCGCTCACGAAAATTGCT 58.197 45.000 0.00 0.00 43.93 3.91
125 126 0.951558 ACCGCTCACGAAAATTGCTT 59.048 45.000 0.00 0.00 43.93 3.91
126 127 1.330306 CCGCTCACGAAAATTGCTTG 58.670 50.000 0.00 0.00 43.93 4.01
127 128 0.704551 CGCTCACGAAAATTGCTTGC 59.295 50.000 0.00 0.00 43.93 4.01
128 129 1.769733 GCTCACGAAAATTGCTTGCA 58.230 45.000 0.00 0.00 0.00 4.08
129 130 1.453148 GCTCACGAAAATTGCTTGCAC 59.547 47.619 0.00 0.00 0.00 4.57
130 131 2.053627 CTCACGAAAATTGCTTGCACC 58.946 47.619 0.00 0.00 0.00 5.01
131 132 1.406898 TCACGAAAATTGCTTGCACCA 59.593 42.857 0.00 0.00 0.00 4.17
136 137 3.122278 CGAAAATTGCTTGCACCAATCAG 59.878 43.478 11.08 0.00 32.07 2.90
145 146 3.483808 TGCACCAATCAGTCAACTGTA 57.516 42.857 9.82 0.00 44.12 2.74
146 147 3.402110 TGCACCAATCAGTCAACTGTAG 58.598 45.455 9.82 2.13 44.12 2.74
159 160 2.770164 ACTGTAGATGACTGTTGGGC 57.230 50.000 0.00 0.00 36.91 5.36
161 162 2.371841 ACTGTAGATGACTGTTGGGCAA 59.628 45.455 0.00 0.00 36.91 4.52
165 166 0.951558 GATGACTGTTGGGCAAACGT 59.048 50.000 0.00 1.20 42.10 3.99
166 167 2.147958 GATGACTGTTGGGCAAACGTA 58.852 47.619 0.00 0.00 42.10 3.57
171 172 3.219281 ACTGTTGGGCAAACGTATTTCT 58.781 40.909 0.00 0.00 42.10 2.52
182 183 3.690475 ACGTATTTCTCGGTTCCCTTT 57.310 42.857 0.00 0.00 0.00 3.11
185 186 2.109425 ATTTCTCGGTTCCCTTTCGG 57.891 50.000 0.00 0.00 0.00 4.30
195 196 3.211865 GTTCCCTTTCGGAGAACAAAGT 58.788 45.455 3.73 0.00 45.90 2.66
212 219 8.157476 AGAACAAAGTATTTCTGGTATGACACT 58.843 33.333 0.00 0.00 35.03 3.55
350 374 2.476051 GCGACAAGACCATGCACG 59.524 61.111 0.00 0.00 0.00 5.34
351 375 3.027170 GCGACAAGACCATGCACGG 62.027 63.158 0.00 0.00 0.00 4.94
362 386 3.675619 ATGCACGGGAGGTTACGCC 62.676 63.158 0.00 0.00 35.57 5.68
363 391 4.382320 GCACGGGAGGTTACGCCA 62.382 66.667 0.00 0.00 38.47 5.69
371 399 4.692475 GGTTACGCCACACCGCCT 62.692 66.667 0.00 0.00 37.17 5.52
387 415 1.379044 CCTCAATCCTGTGCCCACC 60.379 63.158 0.00 0.00 0.00 4.61
397 425 0.489567 TGTGCCCACCCCCTAAAAAT 59.510 50.000 0.00 0.00 0.00 1.82
452 481 2.671070 CCCAAGAGGCACCGATGT 59.329 61.111 0.00 0.00 0.00 3.06
453 482 1.746615 CCCAAGAGGCACCGATGTG 60.747 63.158 0.00 0.00 45.65 3.21
454 483 1.746615 CCAAGAGGCACCGATGTGG 60.747 63.158 0.00 0.00 42.99 4.17
455 484 1.746615 CAAGAGGCACCGATGTGGG 60.747 63.158 0.00 0.00 44.64 4.61
457 486 4.489771 GAGGCACCGATGTGGGGG 62.490 72.222 0.00 0.00 43.68 5.40
475 504 4.375723 CGCACACACGCTGTTTTT 57.624 50.000 0.00 0.00 0.00 1.94
481 510 1.404035 ACACACGCTGTTTTTCCTTCC 59.596 47.619 0.00 0.00 0.00 3.46
517 546 2.317679 CTCGAATATCGACCGAGGTG 57.682 55.000 15.93 0.00 44.82 4.00
605 639 2.248274 AAATGGCGCTTTCGTACCGC 62.248 55.000 7.64 5.06 46.34 5.68
610 644 4.143363 GCTTTCGTACCGCGCACC 62.143 66.667 8.75 0.00 41.07 5.01
611 645 3.834373 CTTTCGTACCGCGCACCG 61.834 66.667 8.75 3.17 41.07 4.94
666 715 1.087501 GGCGAACAAGAACTCCATCC 58.912 55.000 0.00 0.00 0.00 3.51
672 721 4.335416 GAACAAGAACTCCATCCCAATCA 58.665 43.478 0.00 0.00 0.00 2.57
812 863 4.394712 AGCCCGGTTCTTGGAGCG 62.395 66.667 0.00 0.00 40.00 5.03
823 874 1.732917 TTGGAGCGTTGCCAAGTTG 59.267 52.632 0.00 0.00 40.32 3.16
858 909 1.553308 GACGTACCGGATGTACTTGC 58.447 55.000 9.46 0.00 46.36 4.01
861 912 1.142314 TACCGGATGTACTTGCGCC 59.858 57.895 9.46 0.00 0.00 6.53
862 913 1.324740 TACCGGATGTACTTGCGCCT 61.325 55.000 9.46 6.70 0.00 5.52
901 955 1.719780 CCGCGATTTCTTCTATACGCC 59.280 52.381 8.23 0.00 42.42 5.68
902 956 1.719780 CGCGATTTCTTCTATACGCCC 59.280 52.381 0.00 0.00 42.42 6.13
903 957 1.719780 GCGATTTCTTCTATACGCCCG 59.280 52.381 0.00 0.00 40.14 6.13
904 958 1.719780 CGATTTCTTCTATACGCCCGC 59.280 52.381 0.00 0.00 0.00 6.13
905 959 2.750948 GATTTCTTCTATACGCCCGCA 58.249 47.619 0.00 0.00 0.00 5.69
906 960 1.930567 TTTCTTCTATACGCCCGCAC 58.069 50.000 0.00 0.00 0.00 5.34
907 961 0.248743 TTCTTCTATACGCCCGCACG 60.249 55.000 0.00 0.00 39.50 5.34
908 962 2.278989 TTCTATACGCCCGCACGC 60.279 61.111 0.00 0.00 36.19 5.34
938 992 7.387945 GTTGTAAACAATTCGTTTTTGGTCTG 58.612 34.615 10.04 0.00 45.79 3.51
948 1002 2.553079 TTTTGGTCTGTTGTGTTCGC 57.447 45.000 0.00 0.00 0.00 4.70
973 1032 2.611224 CGCCCCGGTTCCTGTATATAAC 60.611 54.545 0.00 0.00 0.00 1.89
992 1051 4.038080 GGCCACGGAAAAGTGCGG 62.038 66.667 0.00 0.00 43.91 5.69
1016 1075 1.613437 TCTCATGCAGAGTTCGACACA 59.387 47.619 11.37 0.00 44.98 3.72
1017 1076 1.991264 CTCATGCAGAGTTCGACACAG 59.009 52.381 0.00 0.00 39.62 3.66
1019 1078 0.969149 ATGCAGAGTTCGACACAGGA 59.031 50.000 0.00 0.00 0.00 3.86
1021 1080 1.269778 TGCAGAGTTCGACACAGGAAG 60.270 52.381 0.00 0.00 0.00 3.46
1022 1081 1.423395 CAGAGTTCGACACAGGAAGC 58.577 55.000 0.00 0.00 0.00 3.86
1024 1083 1.140816 GAGTTCGACACAGGAAGCAC 58.859 55.000 0.00 0.00 0.00 4.40
1025 1084 0.464036 AGTTCGACACAGGAAGCACA 59.536 50.000 0.00 0.00 0.00 4.57
1026 1085 0.582005 GTTCGACACAGGAAGCACAC 59.418 55.000 0.00 0.00 0.00 3.82
1027 1086 0.176910 TTCGACACAGGAAGCACACA 59.823 50.000 0.00 0.00 0.00 3.72
1028 1087 0.392706 TCGACACAGGAAGCACACAT 59.607 50.000 0.00 0.00 0.00 3.21
1029 1088 1.202639 TCGACACAGGAAGCACACATT 60.203 47.619 0.00 0.00 0.00 2.71
1030 1089 1.069703 CGACACAGGAAGCACACATTG 60.070 52.381 0.00 0.00 0.00 2.82
1031 1090 1.949525 GACACAGGAAGCACACATTGT 59.050 47.619 0.00 0.00 0.00 2.71
1033 1092 3.141398 ACACAGGAAGCACACATTGTAG 58.859 45.455 0.00 0.00 0.00 2.74
1034 1093 2.095567 CACAGGAAGCACACATTGTAGC 60.096 50.000 5.52 5.52 0.00 3.58
1036 1095 1.352352 AGGAAGCACACATTGTAGCCT 59.648 47.619 9.12 0.00 0.00 4.58
1037 1096 2.162681 GGAAGCACACATTGTAGCCTT 58.837 47.619 9.12 3.16 0.00 4.35
1038 1097 2.095059 GGAAGCACACATTGTAGCCTTG 60.095 50.000 9.12 0.00 0.00 3.61
1039 1098 2.276732 AGCACACATTGTAGCCTTGT 57.723 45.000 9.12 0.00 0.00 3.16
1040 1099 2.586425 AGCACACATTGTAGCCTTGTT 58.414 42.857 9.12 0.00 0.00 2.83
1041 1100 2.958355 AGCACACATTGTAGCCTTGTTT 59.042 40.909 9.12 0.00 0.00 2.83
1044 1103 4.043750 CACACATTGTAGCCTTGTTTGTG 58.956 43.478 0.00 0.00 39.03 3.33
1047 1106 1.669604 TTGTAGCCTTGTTTGTGCGA 58.330 45.000 0.00 0.00 0.00 5.10
1048 1107 1.225855 TGTAGCCTTGTTTGTGCGAG 58.774 50.000 0.00 0.00 0.00 5.03
1051 1110 3.022287 CCTTGTTTGTGCGAGCGT 58.978 55.556 0.00 0.00 0.00 5.07
1052 1111 1.837538 GCCTTGTTTGTGCGAGCGTA 61.838 55.000 0.00 0.00 0.00 4.42
1054 1113 0.859232 CTTGTTTGTGCGAGCGTACT 59.141 50.000 12.00 0.00 0.00 2.73
1057 1119 0.435008 GTTTGTGCGAGCGTACTCTG 59.565 55.000 12.00 0.00 41.09 3.35
1063 1125 1.633171 CGAGCGTACTCTGCATTGC 59.367 57.895 0.46 0.46 41.09 3.56
1084 1146 1.374758 CTTGTGTGCCGGGAGAGAC 60.375 63.158 2.18 0.00 0.00 3.36
1086 1148 3.311110 GTGTGCCGGGAGAGACCA 61.311 66.667 2.18 0.00 41.20 4.02
1302 1376 3.488978 CTGCTGCTGCTCGTGCTC 61.489 66.667 17.00 3.43 40.48 4.26
1330 1404 2.722487 CGGGCCTGCTCTACTACG 59.278 66.667 0.84 0.00 0.00 3.51
1782 1856 4.269523 AAGCTCAAGCCCGTGCCA 62.270 61.111 0.00 0.00 43.38 4.92
1888 1962 2.031163 GGATCCCCATCGGCTTCG 59.969 66.667 0.00 0.00 0.00 3.79
2144 2218 0.670162 ACGCCGTAGCCGTACATATT 59.330 50.000 0.00 0.00 34.57 1.28
2180 2255 0.242286 CAGCAGCTACGACACAGAGT 59.758 55.000 0.00 0.00 0.00 3.24
2205 2303 1.135888 CATTGGTCACACGTGCTGATG 60.136 52.381 17.22 6.50 0.00 3.07
2546 2653 2.557317 GTCGTCACCTTCCTCAACAAA 58.443 47.619 0.00 0.00 0.00 2.83
2754 2866 7.505923 AGTTCATGGGCTCCTAATTATTAAACC 59.494 37.037 0.00 0.00 0.00 3.27
2755 2867 7.161715 TCATGGGCTCCTAATTATTAAACCT 57.838 36.000 0.00 0.00 0.00 3.50
2809 2922 3.281240 GCACCAGCACCATCAAGG 58.719 61.111 0.00 0.00 45.67 3.61
2812 2925 1.171308 CACCAGCACCATCAAGGAAG 58.829 55.000 0.00 0.00 41.22 3.46
2813 2926 0.038744 ACCAGCACCATCAAGGAAGG 59.961 55.000 0.00 0.00 41.22 3.46
2814 2927 0.329261 CCAGCACCATCAAGGAAGGA 59.671 55.000 0.00 0.00 41.22 3.36
2816 2929 2.022195 CAGCACCATCAAGGAAGGATG 58.978 52.381 0.00 0.00 41.22 3.51
2817 2930 1.637553 AGCACCATCAAGGAAGGATGT 59.362 47.619 0.00 0.00 40.38 3.06
2818 2931 2.846206 AGCACCATCAAGGAAGGATGTA 59.154 45.455 0.00 0.00 40.38 2.29
2820 2933 4.016444 GCACCATCAAGGAAGGATGTAAA 58.984 43.478 0.00 0.00 40.38 2.01
2840 2957 0.609131 AGGGGACAAACTCAATGCCG 60.609 55.000 0.00 0.00 0.00 5.69
2844 2961 1.408422 GACAAACTCAATGCCGTTGC 58.592 50.000 0.00 0.00 37.74 4.17
2879 2997 8.486210 TCTGATATAATATTCTAATGCGGGCTT 58.514 33.333 0.00 0.00 0.00 4.35
2893 3032 1.470098 CGGGCTTCTGGATCAAAACAG 59.530 52.381 0.00 0.00 36.07 3.16
2894 3033 2.519013 GGGCTTCTGGATCAAAACAGT 58.481 47.619 0.00 0.00 36.17 3.55
2895 3034 2.489722 GGGCTTCTGGATCAAAACAGTC 59.510 50.000 0.00 0.00 36.17 3.51
2897 3036 2.808543 GCTTCTGGATCAAAACAGTCGT 59.191 45.455 0.00 0.00 36.17 4.34
2898 3037 3.251004 GCTTCTGGATCAAAACAGTCGTT 59.749 43.478 0.00 0.00 36.17 3.85
2899 3038 4.611581 GCTTCTGGATCAAAACAGTCGTTC 60.612 45.833 0.00 0.00 36.17 3.95
2901 3040 5.462530 TCTGGATCAAAACAGTCGTTCTA 57.537 39.130 0.00 0.00 36.17 2.10
2905 3054 4.989168 GGATCAAAACAGTCGTTCTACACT 59.011 41.667 0.00 0.00 32.91 3.55
2909 3058 3.644884 AACAGTCGTTCTACACTCAGG 57.355 47.619 0.00 0.00 0.00 3.86
2910 3059 1.269998 ACAGTCGTTCTACACTCAGGC 59.730 52.381 0.00 0.00 0.00 4.85
2919 3068 0.963856 TACACTCAGGCGGACGTCAT 60.964 55.000 18.91 0.00 0.00 3.06
2930 3083 2.793933 CGGACGTCATCAACTATCGTT 58.206 47.619 18.91 0.00 34.93 3.85
2946 3099 2.083774 TCGTTTCCATCCATTCTGCAC 58.916 47.619 0.00 0.00 0.00 4.57
2964 3117 4.092279 TGCACCCAATGGTTGATGAAATA 58.908 39.130 0.00 0.00 44.75 1.40
2973 3126 5.465532 TGGTTGATGAAATAGCTTTGCAA 57.534 34.783 0.00 0.00 0.00 4.08
2986 3139 4.009675 AGCTTTGCAATGAATTCGACCTA 58.990 39.130 15.97 0.00 0.00 3.08
2988 3141 4.334443 CTTTGCAATGAATTCGACCTACG 58.666 43.478 6.48 0.00 44.09 3.51
3000 3153 2.756207 TCGACCTACGATGGTTGATGAA 59.244 45.455 14.41 0.00 46.45 2.57
3002 3155 4.119862 CGACCTACGATGGTTGATGAAAT 58.880 43.478 11.57 0.00 42.68 2.17
3007 3160 5.406780 CCTACGATGGTTGATGAAATAGCTC 59.593 44.000 0.00 0.00 0.00 4.09
3015 3168 4.426736 TGATGAAATAGCTCTGCATCCA 57.573 40.909 12.23 1.49 35.64 3.41
3020 3173 0.683412 ATAGCTCTGCATCCATCGCA 59.317 50.000 0.00 0.00 37.88 5.10
3035 3188 4.107051 GCAGCCCACACGCACATC 62.107 66.667 0.00 0.00 0.00 3.06
3038 3191 1.079127 AGCCCACACGCACATCTAC 60.079 57.895 0.00 0.00 0.00 2.59
3042 3195 0.037326 CCACACGCACATCTACCACT 60.037 55.000 0.00 0.00 0.00 4.00
3055 3211 6.260271 CACATCTACCACTGTACGATTCTCTA 59.740 42.308 0.00 0.00 0.00 2.43
3068 3224 3.505680 CGATTCTCTAGTGCCATAGCTCT 59.494 47.826 0.00 0.00 44.68 4.09
3070 3226 2.870175 TCTCTAGTGCCATAGCTCTCC 58.130 52.381 0.00 0.00 41.77 3.71
3072 3228 1.217942 TCTAGTGCCATAGCTCTCCCA 59.782 52.381 0.00 0.00 41.77 4.37
3074 3230 1.147153 GTGCCATAGCTCTCCCACC 59.853 63.158 0.00 0.00 40.80 4.61
3075 3231 1.003442 TGCCATAGCTCTCCCACCT 59.997 57.895 0.00 0.00 40.80 4.00
3087 3243 3.431725 CCACCTTCCCGCGCTTTC 61.432 66.667 5.56 0.00 0.00 2.62
3115 3271 3.691342 CCCTCGTCCACCGCTTCA 61.691 66.667 0.00 0.00 36.19 3.02
3123 3279 2.359900 GTCCACCGCTTCAATGAGAAT 58.640 47.619 0.00 0.00 35.25 2.40
3129 3285 2.523015 CGCTTCAATGAGAATTGGTGC 58.477 47.619 0.00 3.51 35.25 5.01
3131 3287 3.612241 CGCTTCAATGAGAATTGGTGCAA 60.612 43.478 0.00 0.00 35.25 4.08
3143 3301 3.056328 GTGCAACCCTTCCTCCGC 61.056 66.667 0.00 0.00 0.00 5.54
3144 3302 3.249189 TGCAACCCTTCCTCCGCT 61.249 61.111 0.00 0.00 0.00 5.52
3157 3315 1.399791 CCTCCGCTGCTGAAAAATCTC 59.600 52.381 0.00 0.00 0.00 2.75
3159 3317 0.097674 CCGCTGCTGAAAAATCTCGG 59.902 55.000 0.00 0.00 0.00 4.63
3160 3318 0.097674 CGCTGCTGAAAAATCTCGGG 59.902 55.000 0.00 0.00 0.00 5.14
3163 3321 1.747355 CTGCTGAAAAATCTCGGGCAT 59.253 47.619 0.00 0.00 0.00 4.40
3164 3322 2.165030 CTGCTGAAAAATCTCGGGCATT 59.835 45.455 0.00 0.00 0.00 3.56
3166 3324 3.182182 GCTGAAAAATCTCGGGCATTTC 58.818 45.455 0.00 1.71 0.00 2.17
3169 3327 3.576118 TGAAAAATCTCGGGCATTTCCAA 59.424 39.130 5.28 0.00 36.21 3.53
3170 3328 3.592898 AAAATCTCGGGCATTTCCAAC 57.407 42.857 0.00 0.00 36.21 3.77
3171 3329 1.094785 AATCTCGGGCATTTCCAACG 58.905 50.000 0.00 0.00 36.21 4.10
3172 3330 0.251916 ATCTCGGGCATTTCCAACGA 59.748 50.000 0.00 0.00 36.21 3.85
3173 3331 0.672401 TCTCGGGCATTTCCAACGAC 60.672 55.000 0.00 0.00 36.21 4.34
3174 3332 1.966493 CTCGGGCATTTCCAACGACG 61.966 60.000 0.00 0.00 36.21 5.12
3175 3333 2.030401 CGGGCATTTCCAACGACGA 61.030 57.895 0.00 0.00 36.21 4.20
3176 3334 1.500396 GGGCATTTCCAACGACGAC 59.500 57.895 0.00 0.00 36.21 4.34
3177 3335 1.500396 GGCATTTCCAACGACGACC 59.500 57.895 0.00 0.00 34.01 4.79
3178 3336 0.953960 GGCATTTCCAACGACGACCT 60.954 55.000 0.00 0.00 34.01 3.85
3179 3337 0.872388 GCATTTCCAACGACGACCTT 59.128 50.000 0.00 0.00 0.00 3.50
3180 3338 1.136057 GCATTTCCAACGACGACCTTC 60.136 52.381 0.00 0.00 0.00 3.46
3181 3339 2.139917 CATTTCCAACGACGACCTTCA 58.860 47.619 0.00 0.00 0.00 3.02
3182 3340 2.312722 TTTCCAACGACGACCTTCAA 57.687 45.000 0.00 0.00 0.00 2.69
3183 3341 2.312722 TTCCAACGACGACCTTCAAA 57.687 45.000 0.00 0.00 0.00 2.69
3184 3342 2.536761 TCCAACGACGACCTTCAAAT 57.463 45.000 0.00 0.00 0.00 2.32
3185 3343 2.409975 TCCAACGACGACCTTCAAATC 58.590 47.619 0.00 0.00 0.00 2.17
3186 3344 2.139917 CCAACGACGACCTTCAAATCA 58.860 47.619 0.00 0.00 0.00 2.57
3187 3345 2.742053 CCAACGACGACCTTCAAATCAT 59.258 45.455 0.00 0.00 0.00 2.45
3188 3346 3.181520 CCAACGACGACCTTCAAATCATC 60.182 47.826 0.00 0.00 0.00 2.92
3189 3347 2.618053 ACGACGACCTTCAAATCATCC 58.382 47.619 0.00 0.00 0.00 3.51
3190 3348 1.588404 CGACGACCTTCAAATCATCCG 59.412 52.381 0.00 0.00 0.00 4.18
3191 3349 1.327764 GACGACCTTCAAATCATCCGC 59.672 52.381 0.00 0.00 0.00 5.54
3192 3350 1.338674 ACGACCTTCAAATCATCCGCA 60.339 47.619 0.00 0.00 0.00 5.69
3193 3351 1.942657 CGACCTTCAAATCATCCGCAT 59.057 47.619 0.00 0.00 0.00 4.73
3194 3352 3.130633 CGACCTTCAAATCATCCGCATA 58.869 45.455 0.00 0.00 0.00 3.14
3195 3353 3.059597 CGACCTTCAAATCATCCGCATAC 60.060 47.826 0.00 0.00 0.00 2.39
3196 3354 2.872245 ACCTTCAAATCATCCGCATACG 59.128 45.455 0.00 0.00 39.67 3.06
3201 3359 2.502213 AATCATCCGCATACGTTCGA 57.498 45.000 0.00 0.00 37.70 3.71
3203 3361 1.552226 TCATCCGCATACGTTCGAAC 58.448 50.000 18.47 18.47 37.70 3.95
3206 3364 2.315356 CGCATACGTTCGAACCGC 59.685 61.111 22.07 17.18 33.53 5.68
3213 3371 3.033764 GTTCGAACCGCGCTGTCA 61.034 61.111 17.68 0.00 40.61 3.58
3215 3373 3.493830 TTCGAACCGCGCTGTCAGT 62.494 57.895 4.51 0.00 40.61 3.41
3219 3377 2.758770 GAACCGCGCTGTCAGTACCA 62.759 60.000 4.51 0.00 0.00 3.25
3220 3378 2.167398 AACCGCGCTGTCAGTACCAT 62.167 55.000 4.51 0.00 0.00 3.55
3222 3380 1.153842 CGCGCTGTCAGTACCATGA 60.154 57.895 5.56 0.00 0.00 3.07
3223 3381 0.528466 CGCGCTGTCAGTACCATGAT 60.528 55.000 5.56 0.00 0.00 2.45
3224 3382 1.269051 CGCGCTGTCAGTACCATGATA 60.269 52.381 5.56 0.00 0.00 2.15
3225 3383 2.608016 CGCGCTGTCAGTACCATGATAT 60.608 50.000 5.56 0.00 0.00 1.63
3237 3395 6.936335 CAGTACCATGATATAGCCATTCAACA 59.064 38.462 0.00 0.00 0.00 3.33
3238 3396 7.609146 CAGTACCATGATATAGCCATTCAACAT 59.391 37.037 0.00 0.00 0.00 2.71
3243 3401 5.316167 TGATATAGCCATTCAACATGGGTC 58.684 41.667 8.81 0.00 45.84 4.46
3250 3408 3.561310 CCATTCAACATGGGTCTGTATCG 59.439 47.826 0.00 0.00 35.58 2.92
3251 3409 2.979814 TCAACATGGGTCTGTATCGG 57.020 50.000 0.00 0.00 0.00 4.18
3253 3411 2.167693 TCAACATGGGTCTGTATCGGTC 59.832 50.000 0.00 0.00 0.00 4.79
3258 3416 1.740285 GGTCTGTATCGGTCCGCAT 59.260 57.895 6.34 3.96 0.00 4.73
3260 3418 0.384309 GTCTGTATCGGTCCGCATGA 59.616 55.000 6.34 0.00 0.00 3.07
3261 3419 1.000163 GTCTGTATCGGTCCGCATGAT 60.000 52.381 6.34 0.00 0.00 2.45
3270 3428 2.588877 CCGCATGATGGTCCGGAC 60.589 66.667 27.04 27.04 43.20 4.79
3281 3439 0.883833 GGTCCGGACGTACTTTCTCA 59.116 55.000 27.68 0.00 0.00 3.27
3282 3440 1.270550 GGTCCGGACGTACTTTCTCAA 59.729 52.381 27.68 0.00 0.00 3.02
3284 3442 2.030451 GTCCGGACGTACTTTCTCAAGT 60.030 50.000 20.85 0.00 45.73 3.16
3289 3447 5.218139 CGGACGTACTTTCTCAAGTAAACT 58.782 41.667 0.00 0.00 45.31 2.66
3290 3448 6.373779 CGGACGTACTTTCTCAAGTAAACTA 58.626 40.000 0.00 0.00 45.31 2.24
3291 3449 6.522510 CGGACGTACTTTCTCAAGTAAACTAG 59.477 42.308 0.00 0.00 45.31 2.57
3293 3451 7.750014 GGACGTACTTTCTCAAGTAAACTAGAG 59.250 40.741 0.00 0.00 45.31 2.43
3295 3453 8.288913 ACGTACTTTCTCAAGTAAACTAGAGAC 58.711 37.037 0.00 0.00 45.31 3.36
3299 3457 9.535878 ACTTTCTCAAGTAAACTAGAGACAAAG 57.464 33.333 0.00 0.00 41.81 2.77
3300 3458 7.948278 TTCTCAAGTAAACTAGAGACAAAGC 57.052 36.000 0.00 0.00 36.90 3.51
3302 3460 8.405418 TCTCAAGTAAACTAGAGACAAAGCTA 57.595 34.615 0.00 0.00 32.57 3.32
3304 3462 8.405418 TCAAGTAAACTAGAGACAAAGCTAGA 57.595 34.615 0.00 0.00 37.96 2.43
3307 3465 5.669164 AAACTAGAGACAAAGCTAGAGGG 57.331 43.478 0.00 0.00 37.96 4.30
3308 3466 3.028130 ACTAGAGACAAAGCTAGAGGGC 58.972 50.000 0.00 0.00 37.96 5.19
3321 3479 3.591254 GAGGGCTTTGCGGACGTCT 62.591 63.158 16.46 0.00 0.00 4.18
3322 3480 2.221906 GAGGGCTTTGCGGACGTCTA 62.222 60.000 16.46 0.00 0.00 2.59
3355 3513 2.701780 CCGTCTCTGACCGTCCTGG 61.702 68.421 0.00 0.00 46.41 4.45
3357 3515 1.979693 GTCTCTGACCGTCCTGGCT 60.980 63.158 0.00 0.00 43.94 4.75
3359 3517 1.680651 CTCTGACCGTCCTGGCTCT 60.681 63.158 0.00 0.00 43.94 4.09
3365 3523 2.581354 CGTCCTGGCTCTCCCAAG 59.419 66.667 0.00 0.00 44.81 3.61
3367 3525 2.123632 TCCTGGCTCTCCCAAGCT 59.876 61.111 0.00 0.00 44.81 3.74
3370 3548 0.679321 CCTGGCTCTCCCAAGCTTTC 60.679 60.000 0.00 0.00 44.81 2.62
3375 3553 1.004161 GCTCTCCCAAGCTTTCCTTCT 59.996 52.381 0.00 0.00 39.27 2.85
3377 3555 2.304180 CTCTCCCAAGCTTTCCTTCTGA 59.696 50.000 0.00 0.00 0.00 3.27
3382 3560 2.094854 CCAAGCTTTCCTTCTGATGCAC 60.095 50.000 0.00 0.00 0.00 4.57
3385 3563 0.449388 CTTTCCTTCTGATGCACGCC 59.551 55.000 0.00 0.00 0.00 5.68
3388 3566 3.197790 CTTCTGATGCACGCCCCG 61.198 66.667 0.00 0.00 0.00 5.73
3417 3595 0.184692 TGATATTCATGCCGGCCCAA 59.815 50.000 26.77 14.33 0.00 4.12
3426 3604 3.463585 CCGGCCCAAAGCATGCAT 61.464 61.111 21.98 4.57 46.50 3.96
3429 3607 2.713967 GGCCCAAAGCATGCATCGT 61.714 57.895 21.98 0.00 46.50 3.73
3434 3612 2.764314 AAAGCATGCATCGTCCGGC 61.764 57.895 21.98 0.00 0.00 6.13
3435 3613 3.974835 AAGCATGCATCGTCCGGCA 62.975 57.895 21.98 0.00 45.23 5.69
3441 3619 2.106074 GCATCGTCCGGCATTGACA 61.106 57.895 0.00 0.00 32.91 3.58
3443 3621 0.740868 CATCGTCCGGCATTGACACT 60.741 55.000 0.00 0.00 32.91 3.55
3444 3622 0.036388 ATCGTCCGGCATTGACACTT 60.036 50.000 0.00 0.00 32.91 3.16
3455 3633 3.236816 CATTGACACTTGCGATTTGACC 58.763 45.455 0.00 0.00 0.00 4.02
3459 3637 1.086696 CACTTGCGATTTGACCGGAT 58.913 50.000 9.46 0.00 0.00 4.18
3464 3642 1.436983 GCGATTTGACCGGATGGGAC 61.437 60.000 9.46 0.00 40.75 4.46
3539 3717 0.765135 TTCCCGAGGAACCAACTCCA 60.765 55.000 1.68 0.00 36.71 3.86
3540 3718 1.192146 TCCCGAGGAACCAACTCCAG 61.192 60.000 0.00 0.00 38.02 3.86
3544 3722 3.056328 GGAACCAACTCCAGCCGC 61.056 66.667 0.00 0.00 35.36 6.53
3581 3759 4.776322 TGACCGGCCCTTCGCATG 62.776 66.667 0.00 0.00 40.31 4.06
3612 3790 1.523095 GACTATTTAAGCAGCGCTCCG 59.477 52.381 7.13 0.00 38.25 4.63
3613 3791 1.136305 ACTATTTAAGCAGCGCTCCGA 59.864 47.619 7.13 0.00 38.25 4.55
3626 3804 3.966026 CTCCGACGCCGTCCACTTC 62.966 68.421 12.26 0.00 0.00 3.01
3635 3813 2.004583 CCGTCCACTTCGCAATCTAA 57.995 50.000 0.00 0.00 0.00 2.10
3636 3814 2.343101 CCGTCCACTTCGCAATCTAAA 58.657 47.619 0.00 0.00 0.00 1.85
3637 3815 2.093783 CCGTCCACTTCGCAATCTAAAC 59.906 50.000 0.00 0.00 0.00 2.01
3638 3816 2.734606 CGTCCACTTCGCAATCTAAACA 59.265 45.455 0.00 0.00 0.00 2.83
3639 3817 3.370978 CGTCCACTTCGCAATCTAAACAT 59.629 43.478 0.00 0.00 0.00 2.71
3641 3819 5.616866 CGTCCACTTCGCAATCTAAACATTT 60.617 40.000 0.00 0.00 0.00 2.32
3643 3821 6.305638 GTCCACTTCGCAATCTAAACATTTTC 59.694 38.462 0.00 0.00 0.00 2.29
3646 3824 4.712122 TCGCAATCTAAACATTTTCCCC 57.288 40.909 0.00 0.00 0.00 4.81
3667 3851 0.998945 CTCCTCCTCCTCTCTCCCCT 60.999 65.000 0.00 0.00 0.00 4.79
3677 3861 1.532794 CTCTCCCCTCCCATCTCCG 60.533 68.421 0.00 0.00 0.00 4.63
3686 3870 0.834261 TCCCATCTCCGTCCACAACA 60.834 55.000 0.00 0.00 0.00 3.33
3688 3872 0.321671 CCATCTCCGTCCACAACACT 59.678 55.000 0.00 0.00 0.00 3.55
3689 3873 1.432514 CATCTCCGTCCACAACACTG 58.567 55.000 0.00 0.00 0.00 3.66
3690 3874 1.000843 CATCTCCGTCCACAACACTGA 59.999 52.381 0.00 0.00 0.00 3.41
3698 3882 1.066752 CACAACACTGACGACGGGA 59.933 57.895 0.00 0.00 0.00 5.14
3712 3896 4.735358 GGGAAAGTCGTGGGCCCC 62.735 72.222 22.27 10.05 32.50 5.80
3713 3897 3.647771 GGAAAGTCGTGGGCCCCT 61.648 66.667 22.27 5.74 0.00 4.79
3735 3919 4.680237 CGGCAGGCGACAGTTCCA 62.680 66.667 11.78 0.00 0.00 3.53
3739 3923 1.599047 CAGGCGACAGTTCCAGGAT 59.401 57.895 0.00 0.00 0.00 3.24
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 6.174049 GTTTGGGGTATAAGATGCTCTATCC 58.826 44.000 0.00 0.00 36.40 2.59
2 3 5.610982 TGGTTTGGGGTATAAGATGCTCTAT 59.389 40.000 0.00 0.00 0.00 1.98
4 5 3.785887 TGGTTTGGGGTATAAGATGCTCT 59.214 43.478 0.00 0.00 0.00 4.09
5 6 4.137543 CTGGTTTGGGGTATAAGATGCTC 58.862 47.826 0.00 0.00 0.00 4.26
6 7 3.688414 GCTGGTTTGGGGTATAAGATGCT 60.688 47.826 0.00 0.00 0.00 3.79
7 8 2.623416 GCTGGTTTGGGGTATAAGATGC 59.377 50.000 0.00 0.00 0.00 3.91
8 9 4.137543 GAGCTGGTTTGGGGTATAAGATG 58.862 47.826 0.00 0.00 0.00 2.90
9 10 3.138468 GGAGCTGGTTTGGGGTATAAGAT 59.862 47.826 0.00 0.00 0.00 2.40
10 11 2.508300 GGAGCTGGTTTGGGGTATAAGA 59.492 50.000 0.00 0.00 0.00 2.10
11 12 2.422945 GGGAGCTGGTTTGGGGTATAAG 60.423 54.545 0.00 0.00 0.00 1.73
12 13 1.567175 GGGAGCTGGTTTGGGGTATAA 59.433 52.381 0.00 0.00 0.00 0.98
13 14 1.218844 GGGAGCTGGTTTGGGGTATA 58.781 55.000 0.00 0.00 0.00 1.47
14 15 0.552615 AGGGAGCTGGTTTGGGGTAT 60.553 55.000 0.00 0.00 0.00 2.73
15 16 0.774491 AAGGGAGCTGGTTTGGGGTA 60.774 55.000 0.00 0.00 0.00 3.69
16 17 2.081585 GAAGGGAGCTGGTTTGGGGT 62.082 60.000 0.00 0.00 0.00 4.95
17 18 1.304464 GAAGGGAGCTGGTTTGGGG 60.304 63.158 0.00 0.00 0.00 4.96
18 19 1.304464 GGAAGGGAGCTGGTTTGGG 60.304 63.158 0.00 0.00 0.00 4.12
19 20 1.304464 GGGAAGGGAGCTGGTTTGG 60.304 63.158 0.00 0.00 0.00 3.28
20 21 1.675641 CGGGAAGGGAGCTGGTTTG 60.676 63.158 0.00 0.00 0.00 2.93
21 22 0.838987 TACGGGAAGGGAGCTGGTTT 60.839 55.000 0.00 0.00 0.00 3.27
22 23 1.229400 TACGGGAAGGGAGCTGGTT 60.229 57.895 0.00 0.00 0.00 3.67
23 24 1.988406 GTACGGGAAGGGAGCTGGT 60.988 63.158 0.00 0.00 0.00 4.00
24 25 1.987855 TGTACGGGAAGGGAGCTGG 60.988 63.158 0.00 0.00 0.00 4.85
25 26 1.218316 GTGTACGGGAAGGGAGCTG 59.782 63.158 0.00 0.00 0.00 4.24
26 27 1.988406 GGTGTACGGGAAGGGAGCT 60.988 63.158 0.00 0.00 0.00 4.09
27 28 0.685458 TAGGTGTACGGGAAGGGAGC 60.685 60.000 0.00 0.00 0.00 4.70
28 29 1.109609 GTAGGTGTACGGGAAGGGAG 58.890 60.000 0.00 0.00 0.00 4.30
29 30 0.680921 CGTAGGTGTACGGGAAGGGA 60.681 60.000 0.00 0.00 46.93 4.20
30 31 1.811860 CGTAGGTGTACGGGAAGGG 59.188 63.158 0.00 0.00 46.93 3.95
38 39 1.359459 GCTTGCAGGCGTAGGTGTAC 61.359 60.000 4.56 0.00 0.00 2.90
39 40 1.079405 GCTTGCAGGCGTAGGTGTA 60.079 57.895 4.56 0.00 0.00 2.90
40 41 2.358737 GCTTGCAGGCGTAGGTGT 60.359 61.111 4.56 0.00 0.00 4.16
41 42 3.127533 GGCTTGCAGGCGTAGGTG 61.128 66.667 15.24 0.00 0.00 4.00
66 67 0.931005 CTAGCTTTTCCGATCGGCAC 59.069 55.000 29.62 15.26 34.68 5.01
67 68 0.810031 GCTAGCTTTTCCGATCGGCA 60.810 55.000 29.62 17.14 34.68 5.69
68 69 0.810031 TGCTAGCTTTTCCGATCGGC 60.810 55.000 29.62 16.85 34.68 5.54
69 70 1.871080 ATGCTAGCTTTTCCGATCGG 58.129 50.000 28.62 28.62 0.00 4.18
70 71 3.951979 AAATGCTAGCTTTTCCGATCG 57.048 42.857 19.78 8.51 0.00 3.69
71 72 5.993106 AGTAAATGCTAGCTTTTCCGATC 57.007 39.130 26.50 15.08 0.00 3.69
72 73 6.583562 AGTAGTAAATGCTAGCTTTTCCGAT 58.416 36.000 26.50 15.59 0.00 4.18
73 74 5.974108 AGTAGTAAATGCTAGCTTTTCCGA 58.026 37.500 26.50 13.03 0.00 4.55
74 75 6.074994 CGTAGTAGTAAATGCTAGCTTTTCCG 60.075 42.308 26.50 15.86 0.00 4.30
75 76 6.755607 ACGTAGTAGTAAATGCTAGCTTTTCC 59.244 38.462 26.50 18.17 41.94 3.13
76 77 7.752557 ACGTAGTAGTAAATGCTAGCTTTTC 57.247 36.000 26.50 18.87 41.94 2.29
77 78 9.643693 TTAACGTAGTAGTAAATGCTAGCTTTT 57.356 29.630 26.11 26.11 45.00 2.27
78 79 9.813446 ATTAACGTAGTAGTAAATGCTAGCTTT 57.187 29.630 17.23 13.35 45.00 3.51
79 80 9.813446 AATTAACGTAGTAGTAAATGCTAGCTT 57.187 29.630 17.23 6.81 45.00 3.74
83 84 9.663904 CGGTAATTAACGTAGTAGTAAATGCTA 57.336 33.333 14.82 0.00 45.00 3.49
84 85 7.168135 GCGGTAATTAACGTAGTAGTAAATGCT 59.832 37.037 22.97 0.00 45.00 3.79
85 86 7.168135 AGCGGTAATTAACGTAGTAGTAAATGC 59.832 37.037 22.97 2.77 45.00 3.56
86 87 8.566008 AGCGGTAATTAACGTAGTAGTAAATG 57.434 34.615 22.97 0.00 45.00 2.32
87 88 8.405531 TGAGCGGTAATTAACGTAGTAGTAAAT 58.594 33.333 22.97 0.00 45.00 1.40
88 89 7.696453 GTGAGCGGTAATTAACGTAGTAGTAAA 59.304 37.037 22.97 0.00 45.00 2.01
89 90 7.186804 GTGAGCGGTAATTAACGTAGTAGTAA 58.813 38.462 22.97 0.00 45.00 2.24
90 91 6.509517 CGTGAGCGGTAATTAACGTAGTAGTA 60.510 42.308 22.97 2.14 45.00 1.82
91 92 5.573146 GTGAGCGGTAATTAACGTAGTAGT 58.427 41.667 22.97 2.78 45.00 2.73
92 93 4.667948 CGTGAGCGGTAATTAACGTAGTAG 59.332 45.833 22.97 9.53 45.00 2.57
93 94 4.331443 TCGTGAGCGGTAATTAACGTAGTA 59.669 41.667 22.97 6.07 38.33 1.82
94 95 3.126858 TCGTGAGCGGTAATTAACGTAGT 59.873 43.478 22.97 9.24 40.48 2.73
95 96 3.683989 TCGTGAGCGGTAATTAACGTAG 58.316 45.455 22.97 10.78 38.89 3.51
96 97 3.755965 TCGTGAGCGGTAATTAACGTA 57.244 42.857 22.97 8.42 38.89 3.57
97 98 2.634982 TCGTGAGCGGTAATTAACGT 57.365 45.000 22.97 10.73 38.89 3.99
98 99 3.976468 TTTCGTGAGCGGTAATTAACG 57.024 42.857 18.56 18.56 38.89 3.18
99 100 5.003121 GCAATTTTCGTGAGCGGTAATTAAC 59.997 40.000 0.00 0.00 38.89 2.01
100 101 5.090083 GCAATTTTCGTGAGCGGTAATTAA 58.910 37.500 0.00 0.00 38.89 1.40
101 102 4.393680 AGCAATTTTCGTGAGCGGTAATTA 59.606 37.500 0.00 0.00 38.89 1.40
102 103 3.190535 AGCAATTTTCGTGAGCGGTAATT 59.809 39.130 0.00 0.00 38.89 1.40
103 104 2.747446 AGCAATTTTCGTGAGCGGTAAT 59.253 40.909 0.00 0.00 38.89 1.89
104 105 2.147958 AGCAATTTTCGTGAGCGGTAA 58.852 42.857 0.00 0.00 38.89 2.85
105 106 1.803334 AGCAATTTTCGTGAGCGGTA 58.197 45.000 0.00 0.00 38.89 4.02
106 107 0.951558 AAGCAATTTTCGTGAGCGGT 59.048 45.000 0.00 0.00 38.89 5.68
107 108 1.330306 CAAGCAATTTTCGTGAGCGG 58.670 50.000 0.00 0.00 38.89 5.52
108 109 0.704551 GCAAGCAATTTTCGTGAGCG 59.295 50.000 0.00 0.00 39.92 5.03
109 110 1.453148 GTGCAAGCAATTTTCGTGAGC 59.547 47.619 0.00 0.00 0.00 4.26
110 111 2.053627 GGTGCAAGCAATTTTCGTGAG 58.946 47.619 0.00 0.00 0.00 3.51
111 112 1.406898 TGGTGCAAGCAATTTTCGTGA 59.593 42.857 0.00 0.00 44.10 4.35
112 113 1.850377 TGGTGCAAGCAATTTTCGTG 58.150 45.000 0.00 0.00 44.10 4.35
121 122 1.337703 GTTGACTGATTGGTGCAAGCA 59.662 47.619 0.00 0.00 46.28 3.91
122 123 1.610522 AGTTGACTGATTGGTGCAAGC 59.389 47.619 0.00 0.00 0.00 4.01
123 124 2.620115 ACAGTTGACTGATTGGTGCAAG 59.380 45.455 17.42 0.00 46.59 4.01
124 125 2.653726 ACAGTTGACTGATTGGTGCAA 58.346 42.857 17.42 0.00 46.59 4.08
125 126 2.346766 ACAGTTGACTGATTGGTGCA 57.653 45.000 17.42 0.00 46.59 4.57
126 127 3.664107 TCTACAGTTGACTGATTGGTGC 58.336 45.455 17.42 0.00 46.59 5.01
127 128 5.349817 GTCATCTACAGTTGACTGATTGGTG 59.650 44.000 17.42 12.05 46.59 4.17
128 129 5.482908 GTCATCTACAGTTGACTGATTGGT 58.517 41.667 17.42 1.34 46.59 3.67
145 146 1.238439 CGTTTGCCCAACAGTCATCT 58.762 50.000 0.00 0.00 34.68 2.90
146 147 0.951558 ACGTTTGCCCAACAGTCATC 59.048 50.000 0.00 0.00 34.68 2.92
159 160 3.734776 GGGAACCGAGAAATACGTTTG 57.265 47.619 0.00 0.00 40.86 2.93
182 183 5.223449 ACCAGAAATACTTTGTTCTCCGA 57.777 39.130 0.00 0.00 31.66 4.55
185 186 8.443937 GTGTCATACCAGAAATACTTTGTTCTC 58.556 37.037 0.00 0.00 31.66 2.87
195 196 3.792401 CGCCAGTGTCATACCAGAAATA 58.208 45.455 0.00 0.00 0.00 1.40
212 219 2.620112 GCTGCTCTTCTTTGCGCCA 61.620 57.895 4.18 0.00 0.00 5.69
241 248 1.212229 GCTCTTGAGCTTGGCTTGC 59.788 57.895 14.65 0.00 39.88 4.01
244 251 1.674980 GCAGCTCTTGAGCTTGGCT 60.675 57.895 21.00 0.00 43.52 4.75
350 374 2.046604 GGTGTGGCGTAACCTCCC 60.047 66.667 0.00 0.00 40.22 4.30
351 375 2.433664 CGGTGTGGCGTAACCTCC 60.434 66.667 2.20 0.00 40.22 4.30
362 386 1.003355 ACAGGATTGAGGCGGTGTG 60.003 57.895 0.00 0.00 0.00 3.82
363 391 1.003355 CACAGGATTGAGGCGGTGT 60.003 57.895 0.00 0.00 0.00 4.16
371 399 2.763215 GGGTGGGCACAGGATTGA 59.237 61.111 0.00 0.00 0.00 2.57
387 415 6.538381 GCACATAATTGTTCCATTTTTAGGGG 59.462 38.462 0.00 0.00 32.34 4.79
397 425 3.706183 TGATGGGCACATAATTGTTCCA 58.294 40.909 0.00 0.00 40.54 3.53
458 487 1.199852 GGAAAAACAGCGTGTGTGCG 61.200 55.000 0.00 0.00 40.26 5.34
459 488 0.100503 AGGAAAAACAGCGTGTGTGC 59.899 50.000 0.00 0.00 40.26 4.57
460 489 2.450160 GAAGGAAAAACAGCGTGTGTG 58.550 47.619 0.00 0.00 40.26 3.82
461 490 1.404035 GGAAGGAAAAACAGCGTGTGT 59.596 47.619 0.00 0.00 43.24 3.72
462 491 1.269051 GGGAAGGAAAAACAGCGTGTG 60.269 52.381 0.00 0.00 0.00 3.82
463 492 1.029681 GGGAAGGAAAAACAGCGTGT 58.970 50.000 0.00 0.00 0.00 4.49
464 493 1.266989 GAGGGAAGGAAAAACAGCGTG 59.733 52.381 0.00 0.00 0.00 5.34
465 494 1.605753 GAGGGAAGGAAAAACAGCGT 58.394 50.000 0.00 0.00 0.00 5.07
466 495 0.881796 GGAGGGAAGGAAAAACAGCG 59.118 55.000 0.00 0.00 0.00 5.18
467 496 1.613925 GTGGAGGGAAGGAAAAACAGC 59.386 52.381 0.00 0.00 0.00 4.40
468 497 2.944129 TGTGGAGGGAAGGAAAAACAG 58.056 47.619 0.00 0.00 0.00 3.16
469 498 3.390175 TTGTGGAGGGAAGGAAAAACA 57.610 42.857 0.00 0.00 0.00 2.83
470 499 6.605471 ATTATTGTGGAGGGAAGGAAAAAC 57.395 37.500 0.00 0.00 0.00 2.43
471 500 6.376018 CGTATTATTGTGGAGGGAAGGAAAAA 59.624 38.462 0.00 0.00 0.00 1.94
472 501 5.883673 CGTATTATTGTGGAGGGAAGGAAAA 59.116 40.000 0.00 0.00 0.00 2.29
473 502 5.433526 CGTATTATTGTGGAGGGAAGGAAA 58.566 41.667 0.00 0.00 0.00 3.13
474 503 4.685030 GCGTATTATTGTGGAGGGAAGGAA 60.685 45.833 0.00 0.00 0.00 3.36
475 504 3.181458 GCGTATTATTGTGGAGGGAAGGA 60.181 47.826 0.00 0.00 0.00 3.36
481 510 2.035449 TCGAGGCGTATTATTGTGGAGG 59.965 50.000 0.00 0.00 0.00 4.30
516 545 0.106167 CCTCCTGGTCGATCCTACCA 60.106 60.000 12.72 12.72 44.75 3.25
517 546 1.465200 GCCTCCTGGTCGATCCTACC 61.465 65.000 5.15 5.15 37.53 3.18
551 585 4.752879 TTGGTACGCGGCTGGCTC 62.753 66.667 12.47 0.00 40.44 4.70
554 588 4.388499 AGGTTGGTACGCGGCTGG 62.388 66.667 12.47 0.00 0.00 4.85
557 591 3.419759 CACAGGTTGGTACGCGGC 61.420 66.667 12.47 2.06 0.00 6.53
605 639 1.425267 TATTTGACGATGGCGGTGCG 61.425 55.000 0.00 0.00 43.17 5.34
607 641 2.418628 AGTTTATTTGACGATGGCGGTG 59.581 45.455 0.00 0.00 43.17 4.94
610 644 3.869246 AGGTAGTTTATTTGACGATGGCG 59.131 43.478 0.00 0.00 44.79 5.69
611 645 4.634443 ACAGGTAGTTTATTTGACGATGGC 59.366 41.667 0.00 0.00 0.00 4.40
613 647 5.500290 GCGACAGGTAGTTTATTTGACGATG 60.500 44.000 0.00 0.00 0.00 3.84
616 650 3.061697 GGCGACAGGTAGTTTATTTGACG 59.938 47.826 0.00 0.00 0.00 4.35
617 651 4.251268 AGGCGACAGGTAGTTTATTTGAC 58.749 43.478 0.00 0.00 0.00 3.18
618 652 4.546829 AGGCGACAGGTAGTTTATTTGA 57.453 40.909 0.00 0.00 0.00 2.69
619 653 4.201685 CGAAGGCGACAGGTAGTTTATTTG 60.202 45.833 0.00 0.00 40.82 2.32
666 715 7.650903 CCTTCTTGTTCTCTTTCTTTTGATTGG 59.349 37.037 0.00 0.00 0.00 3.16
672 721 7.831690 AGTTCTCCTTCTTGTTCTCTTTCTTTT 59.168 33.333 0.00 0.00 0.00 2.27
759 809 1.946267 CGGCCTTGTTTTACACGCT 59.054 52.632 0.00 0.00 0.00 5.07
760 810 1.728074 GCGGCCTTGTTTTACACGC 60.728 57.895 0.00 0.00 33.89 5.34
762 812 1.483316 GTTGCGGCCTTGTTTTACAC 58.517 50.000 0.00 0.00 0.00 2.90
823 874 1.047739 CGTCGTCGTTAGGTGTTGTC 58.952 55.000 0.00 0.00 0.00 3.18
848 899 0.461961 AGGAGAGGCGCAAGTACATC 59.538 55.000 10.83 0.00 41.68 3.06
858 909 3.383185 AGAGAAGATTACAAGGAGAGGCG 59.617 47.826 0.00 0.00 0.00 5.52
861 912 4.499019 GCGGAGAGAAGATTACAAGGAGAG 60.499 50.000 0.00 0.00 0.00 3.20
862 913 3.381908 GCGGAGAGAAGATTACAAGGAGA 59.618 47.826 0.00 0.00 0.00 3.71
906 960 1.377505 GAATTGTTTACAACGCGTGCG 59.622 47.619 14.98 13.39 46.03 5.34
907 961 1.377505 CGAATTGTTTACAACGCGTGC 59.622 47.619 14.98 0.00 38.86 5.34
908 962 2.631158 ACGAATTGTTTACAACGCGTG 58.369 42.857 14.98 10.05 42.87 5.34
938 992 4.719616 GGCGAGCGCGAACACAAC 62.720 66.667 15.92 0.00 43.06 3.32
1011 1070 1.949525 ACAATGTGTGCTTCCTGTGTC 59.050 47.619 0.00 0.00 0.00 3.67
1016 1075 1.352352 AGGCTACAATGTGTGCTTCCT 59.648 47.619 11.55 0.36 0.00 3.36
1017 1076 1.826385 AGGCTACAATGTGTGCTTCC 58.174 50.000 11.55 0.00 0.00 3.46
1019 1078 2.586425 ACAAGGCTACAATGTGTGCTT 58.414 42.857 11.55 3.30 0.00 3.91
1021 1080 3.052036 CAAACAAGGCTACAATGTGTGC 58.948 45.455 0.00 0.07 0.00 4.57
1022 1081 4.043750 CACAAACAAGGCTACAATGTGTG 58.956 43.478 5.82 5.82 38.10 3.82
1024 1083 3.052036 GCACAAACAAGGCTACAATGTG 58.948 45.455 15.11 15.11 39.61 3.21
1025 1084 2.287547 CGCACAAACAAGGCTACAATGT 60.288 45.455 0.00 0.00 0.00 2.71
1026 1085 2.031245 TCGCACAAACAAGGCTACAATG 60.031 45.455 0.00 0.00 0.00 2.82
1027 1086 2.226330 TCGCACAAACAAGGCTACAAT 58.774 42.857 0.00 0.00 0.00 2.71
1028 1087 1.601903 CTCGCACAAACAAGGCTACAA 59.398 47.619 0.00 0.00 0.00 2.41
1029 1088 1.225855 CTCGCACAAACAAGGCTACA 58.774 50.000 0.00 0.00 0.00 2.74
1030 1089 0.110192 GCTCGCACAAACAAGGCTAC 60.110 55.000 0.00 0.00 0.00 3.58
1031 1090 1.565156 CGCTCGCACAAACAAGGCTA 61.565 55.000 0.00 0.00 0.00 3.93
1033 1092 1.837538 TACGCTCGCACAAACAAGGC 61.838 55.000 0.00 0.00 0.00 4.35
1034 1093 0.110823 GTACGCTCGCACAAACAAGG 60.111 55.000 0.00 0.00 0.00 3.61
1036 1095 0.856641 GAGTACGCTCGCACAAACAA 59.143 50.000 0.00 0.00 31.39 2.83
1037 1096 0.031585 AGAGTACGCTCGCACAAACA 59.968 50.000 0.00 0.00 46.03 2.83
1038 1097 0.435008 CAGAGTACGCTCGCACAAAC 59.565 55.000 0.00 0.00 46.03 2.93
1039 1098 1.282248 GCAGAGTACGCTCGCACAAA 61.282 55.000 13.27 0.00 46.03 2.83
1040 1099 1.733041 GCAGAGTACGCTCGCACAA 60.733 57.895 13.27 0.00 46.03 3.33
1041 1100 2.126463 GCAGAGTACGCTCGCACA 60.126 61.111 13.27 0.00 46.03 4.57
1044 1103 1.633171 CAATGCAGAGTACGCTCGC 59.367 57.895 11.91 11.91 46.03 5.03
1057 1119 2.025418 GGCACACAAGCTGCAATGC 61.025 57.895 1.02 0.00 36.27 3.56
1063 1125 3.052082 CTCCCGGCACACAAGCTG 61.052 66.667 0.00 0.00 40.60 4.24
1084 1146 2.137177 ATCGGTCCCAACCAACCTGG 62.137 60.000 0.00 0.00 46.86 4.45
1086 1148 1.378762 CATCGGTCCCAACCAACCT 59.621 57.895 0.00 0.00 46.86 3.50
1782 1856 2.121506 TTGGGCAGGTCCTCCCTT 60.122 61.111 20.80 0.00 42.73 3.95
1888 1962 4.828925 GCGGAGGCAGGAGAGCAC 62.829 72.222 0.00 0.00 39.62 4.40
2061 2135 0.326618 TGGAGAGGAAGATGGGGTCC 60.327 60.000 0.00 0.00 0.00 4.46
2130 2204 4.982916 CAGAGGTTGAATATGTACGGCTAC 59.017 45.833 0.00 0.00 0.00 3.58
2131 2205 4.647853 ACAGAGGTTGAATATGTACGGCTA 59.352 41.667 0.00 0.00 0.00 3.93
2132 2206 3.451178 ACAGAGGTTGAATATGTACGGCT 59.549 43.478 0.00 0.00 0.00 5.52
2133 2207 3.793559 ACAGAGGTTGAATATGTACGGC 58.206 45.455 0.00 0.00 0.00 5.68
2134 2208 5.898174 TGTACAGAGGTTGAATATGTACGG 58.102 41.667 8.69 0.00 44.44 4.02
2135 2209 5.459107 GCTGTACAGAGGTTGAATATGTACG 59.541 44.000 27.08 0.00 44.44 3.67
2180 2255 1.606994 GCACGTGTGACCAATGGAGTA 60.607 52.381 18.38 0.00 0.00 2.59
2300 2407 4.181010 AGCAGGCGCCGGATCATT 62.181 61.111 31.49 2.85 39.83 2.57
2471 2578 4.332543 TCGAGCCCCTTCCACCCT 62.333 66.667 0.00 0.00 0.00 4.34
2546 2653 3.626924 GTGAGGTCGTGGGGCAGT 61.627 66.667 0.00 0.00 0.00 4.40
2792 2905 0.895100 TTCCTTGATGGTGCTGGTGC 60.895 55.000 0.00 0.00 37.07 5.01
2793 2906 1.171308 CTTCCTTGATGGTGCTGGTG 58.829 55.000 0.00 0.00 37.07 4.17
2794 2907 0.038744 CCTTCCTTGATGGTGCTGGT 59.961 55.000 0.00 0.00 37.07 4.00
2795 2908 0.329261 TCCTTCCTTGATGGTGCTGG 59.671 55.000 0.00 0.00 37.07 4.85
2796 2909 2.022195 CATCCTTCCTTGATGGTGCTG 58.978 52.381 0.00 0.00 36.74 4.41
2798 2911 2.134789 ACATCCTTCCTTGATGGTGC 57.865 50.000 5.36 0.00 43.10 5.01
2799 2912 5.126061 CCTTTTACATCCTTCCTTGATGGTG 59.874 44.000 5.36 0.00 43.10 4.17
2800 2913 5.264395 CCTTTTACATCCTTCCTTGATGGT 58.736 41.667 5.36 0.00 43.10 3.55
2801 2914 4.646492 CCCTTTTACATCCTTCCTTGATGG 59.354 45.833 5.36 0.00 43.10 3.51
2802 2915 4.646492 CCCCTTTTACATCCTTCCTTGATG 59.354 45.833 0.00 0.00 44.13 3.07
2803 2916 4.544152 TCCCCTTTTACATCCTTCCTTGAT 59.456 41.667 0.00 0.00 0.00 2.57
2805 2918 4.017126 GTCCCCTTTTACATCCTTCCTTG 58.983 47.826 0.00 0.00 0.00 3.61
2807 2920 3.265489 TGTCCCCTTTTACATCCTTCCT 58.735 45.455 0.00 0.00 0.00 3.36
2809 2922 5.077564 AGTTTGTCCCCTTTTACATCCTTC 58.922 41.667 0.00 0.00 0.00 3.46
2812 2925 4.403734 TGAGTTTGTCCCCTTTTACATCC 58.596 43.478 0.00 0.00 0.00 3.51
2813 2926 6.389906 CATTGAGTTTGTCCCCTTTTACATC 58.610 40.000 0.00 0.00 0.00 3.06
2814 2927 5.279456 GCATTGAGTTTGTCCCCTTTTACAT 60.279 40.000 0.00 0.00 0.00 2.29
2816 2929 4.556233 GCATTGAGTTTGTCCCCTTTTAC 58.444 43.478 0.00 0.00 0.00 2.01
2817 2930 3.576550 GGCATTGAGTTTGTCCCCTTTTA 59.423 43.478 0.00 0.00 0.00 1.52
2818 2931 2.368548 GGCATTGAGTTTGTCCCCTTTT 59.631 45.455 0.00 0.00 0.00 2.27
2820 2933 1.632589 GGCATTGAGTTTGTCCCCTT 58.367 50.000 0.00 0.00 0.00 3.95
2879 2997 4.336889 AGAACGACTGTTTTGATCCAGA 57.663 40.909 4.00 0.00 38.78 3.86
2893 3032 0.456312 CCGCCTGAGTGTAGAACGAC 60.456 60.000 0.00 0.00 0.00 4.34
2894 3033 0.607217 TCCGCCTGAGTGTAGAACGA 60.607 55.000 0.00 0.00 0.00 3.85
2895 3034 0.456312 GTCCGCCTGAGTGTAGAACG 60.456 60.000 0.00 0.00 0.00 3.95
2897 3036 0.892358 ACGTCCGCCTGAGTGTAGAA 60.892 55.000 0.00 0.00 0.00 2.10
2898 3037 1.303074 ACGTCCGCCTGAGTGTAGA 60.303 57.895 0.00 0.00 0.00 2.59
2899 3038 1.136984 GACGTCCGCCTGAGTGTAG 59.863 63.158 3.51 0.00 0.00 2.74
2901 3040 2.214181 GATGACGTCCGCCTGAGTGT 62.214 60.000 14.12 0.00 0.00 3.55
2905 3054 1.080093 GTTGATGACGTCCGCCTGA 60.080 57.895 14.12 0.00 0.00 3.86
2909 3058 1.121240 CGATAGTTGATGACGTCCGC 58.879 55.000 14.12 5.41 0.00 5.54
2930 3083 0.703488 TGGGTGCAGAATGGATGGAA 59.297 50.000 0.00 0.00 39.99 3.53
2946 3099 5.603170 AAGCTATTTCATCAACCATTGGG 57.397 39.130 7.78 0.00 41.29 4.12
2964 3117 2.821969 AGGTCGAATTCATTGCAAAGCT 59.178 40.909 1.71 0.00 0.00 3.74
2986 3139 4.813161 CAGAGCTATTTCATCAACCATCGT 59.187 41.667 0.00 0.00 0.00 3.73
2988 3141 4.577693 TGCAGAGCTATTTCATCAACCATC 59.422 41.667 0.00 0.00 0.00 3.51
3000 3153 1.071228 TGCGATGGATGCAGAGCTATT 59.929 47.619 15.46 0.00 37.44 1.73
3002 3155 2.126951 TGCGATGGATGCAGAGCTA 58.873 52.632 15.46 2.73 37.44 3.32
3020 3173 1.079127 GTAGATGTGCGTGTGGGCT 60.079 57.895 0.00 0.00 0.00 5.19
3021 3174 2.106683 GGTAGATGTGCGTGTGGGC 61.107 63.158 0.00 0.00 0.00 5.36
3032 3185 5.759506 AGAGAATCGTACAGTGGTAGATG 57.240 43.478 0.00 0.00 42.67 2.90
3033 3186 6.483974 CACTAGAGAATCGTACAGTGGTAGAT 59.516 42.308 0.00 0.00 42.67 1.98
3035 3188 5.504337 GCACTAGAGAATCGTACAGTGGTAG 60.504 48.000 0.00 0.00 42.67 3.18
3038 3191 3.489398 GGCACTAGAGAATCGTACAGTGG 60.489 52.174 0.00 0.00 42.67 4.00
3042 3195 4.023107 GCTATGGCACTAGAGAATCGTACA 60.023 45.833 0.00 0.00 38.27 2.90
3055 3211 1.341156 GGTGGGAGAGCTATGGCACT 61.341 60.000 3.10 1.26 41.80 4.40
3070 3226 3.431725 GAAAGCGCGGGAAGGTGG 61.432 66.667 8.83 0.00 0.00 4.61
3072 3228 2.668550 GTGAAAGCGCGGGAAGGT 60.669 61.111 8.83 0.00 0.00 3.50
3074 3230 2.556287 GTGTGAAAGCGCGGGAAG 59.444 61.111 8.83 0.00 0.00 3.46
3075 3231 2.975799 GGTGTGAAAGCGCGGGAA 60.976 61.111 8.83 0.00 0.00 3.97
3103 3259 1.808411 TTCTCATTGAAGCGGTGGAC 58.192 50.000 0.00 0.00 0.00 4.02
3115 3271 2.893424 AGGGTTGCACCAATTCTCATT 58.107 42.857 7.49 0.00 41.02 2.57
3123 3279 1.152830 GGAGGAAGGGTTGCACCAA 59.847 57.895 7.49 0.00 41.02 3.67
3129 3285 2.747855 GCAGCGGAGGAAGGGTTG 60.748 66.667 0.00 0.00 0.00 3.77
3131 3287 3.710722 CAGCAGCGGAGGAAGGGT 61.711 66.667 0.00 0.00 0.00 4.34
3133 3291 0.606401 TTTTCAGCAGCGGAGGAAGG 60.606 55.000 0.00 0.00 0.00 3.46
3139 3297 1.078709 CGAGATTTTTCAGCAGCGGA 58.921 50.000 0.00 0.00 0.00 5.54
3142 3300 0.179153 GCCCGAGATTTTTCAGCAGC 60.179 55.000 0.00 0.00 0.00 5.25
3143 3301 1.167851 TGCCCGAGATTTTTCAGCAG 58.832 50.000 0.00 0.00 0.00 4.24
3144 3302 1.838112 ATGCCCGAGATTTTTCAGCA 58.162 45.000 0.00 0.00 32.59 4.41
3157 3315 2.030401 TCGTCGTTGGAAATGCCCG 61.030 57.895 0.00 0.00 34.97 6.13
3159 3317 0.953960 AGGTCGTCGTTGGAAATGCC 60.954 55.000 0.00 0.00 31.35 4.40
3160 3318 0.872388 AAGGTCGTCGTTGGAAATGC 59.128 50.000 0.00 0.00 31.35 3.56
3163 3321 2.312722 TTGAAGGTCGTCGTTGGAAA 57.687 45.000 0.00 0.00 0.00 3.13
3164 3322 2.312722 TTTGAAGGTCGTCGTTGGAA 57.687 45.000 0.00 0.00 0.00 3.53
3166 3324 2.139917 TGATTTGAAGGTCGTCGTTGG 58.860 47.619 0.00 0.00 0.00 3.77
3169 3327 2.618053 GGATGATTTGAAGGTCGTCGT 58.382 47.619 0.00 0.00 32.43 4.34
3170 3328 1.588404 CGGATGATTTGAAGGTCGTCG 59.412 52.381 0.00 0.00 32.43 5.12
3171 3329 1.327764 GCGGATGATTTGAAGGTCGTC 59.672 52.381 0.00 0.00 0.00 4.20
3172 3330 1.338674 TGCGGATGATTTGAAGGTCGT 60.339 47.619 0.00 0.00 0.00 4.34
3173 3331 1.368641 TGCGGATGATTTGAAGGTCG 58.631 50.000 0.00 0.00 0.00 4.79
3174 3332 3.059597 CGTATGCGGATGATTTGAAGGTC 60.060 47.826 0.00 0.00 0.00 3.85
3175 3333 2.872245 CGTATGCGGATGATTTGAAGGT 59.128 45.455 0.00 0.00 0.00 3.50
3176 3334 2.872245 ACGTATGCGGATGATTTGAAGG 59.128 45.455 8.39 0.00 43.45 3.46
3177 3335 4.518217 GAACGTATGCGGATGATTTGAAG 58.482 43.478 8.39 0.00 43.45 3.02
3178 3336 3.000825 CGAACGTATGCGGATGATTTGAA 59.999 43.478 8.39 0.00 43.45 2.69
3179 3337 2.538037 CGAACGTATGCGGATGATTTGA 59.462 45.455 8.39 0.00 43.45 2.69
3180 3338 2.538037 TCGAACGTATGCGGATGATTTG 59.462 45.455 8.39 0.00 43.45 2.32
3181 3339 2.816689 TCGAACGTATGCGGATGATTT 58.183 42.857 8.39 0.00 43.45 2.17
3182 3340 2.502213 TCGAACGTATGCGGATGATT 57.498 45.000 8.39 0.00 43.45 2.57
3183 3341 2.124903 GTTCGAACGTATGCGGATGAT 58.875 47.619 13.36 0.00 43.45 2.45
3184 3342 1.552226 GTTCGAACGTATGCGGATGA 58.448 50.000 13.36 0.00 43.45 2.92
3185 3343 0.575390 GGTTCGAACGTATGCGGATG 59.425 55.000 21.34 0.00 43.45 3.51
3186 3344 0.868602 CGGTTCGAACGTATGCGGAT 60.869 55.000 21.34 0.00 43.45 4.18
3187 3345 1.514657 CGGTTCGAACGTATGCGGA 60.515 57.895 21.34 0.00 43.45 5.54
3188 3346 2.992313 CGGTTCGAACGTATGCGG 59.008 61.111 21.34 0.00 43.45 5.69
3189 3347 2.315356 GCGGTTCGAACGTATGCG 59.685 61.111 21.34 18.55 44.93 4.73
3190 3348 2.315356 CGCGGTTCGAACGTATGC 59.685 61.111 21.34 19.32 41.67 3.14
3191 3349 2.156446 AGCGCGGTTCGAACGTATG 61.156 57.895 21.34 12.17 41.67 2.39
3192 3350 2.156446 CAGCGCGGTTCGAACGTAT 61.156 57.895 21.34 3.50 41.67 3.06
3193 3351 2.801996 CAGCGCGGTTCGAACGTA 60.802 61.111 21.34 0.00 41.67 3.57
3194 3352 4.936823 ACAGCGCGGTTCGAACGT 62.937 61.111 21.34 10.02 41.67 3.99
3195 3353 4.117372 GACAGCGCGGTTCGAACG 62.117 66.667 21.34 16.92 41.67 3.95
3196 3354 3.000080 CTGACAGCGCGGTTCGAAC 62.000 63.158 20.14 20.14 41.67 3.95
3201 3359 2.048503 GGTACTGACAGCGCGGTT 60.049 61.111 15.89 1.03 0.00 4.44
3203 3361 2.167219 CATGGTACTGACAGCGCGG 61.167 63.158 8.83 5.83 0.00 6.46
3206 3364 4.169508 GCTATATCATGGTACTGACAGCG 58.830 47.826 1.25 0.00 0.00 5.18
3213 3371 7.078249 TGTTGAATGGCTATATCATGGTACT 57.922 36.000 0.00 0.00 0.00 2.73
3215 3373 6.885918 CCATGTTGAATGGCTATATCATGGTA 59.114 38.462 18.35 0.00 43.16 3.25
3219 3377 5.895807 ACCCATGTTGAATGGCTATATCAT 58.104 37.500 0.00 0.00 37.85 2.45
3220 3378 5.073554 AGACCCATGTTGAATGGCTATATCA 59.926 40.000 0.00 0.00 37.85 2.15
3222 3380 5.163055 ACAGACCCATGTTGAATGGCTATAT 60.163 40.000 0.00 0.00 37.85 0.86
3223 3381 4.165950 ACAGACCCATGTTGAATGGCTATA 59.834 41.667 0.00 0.00 37.85 1.31
3224 3382 3.053395 ACAGACCCATGTTGAATGGCTAT 60.053 43.478 0.00 0.00 37.85 2.97
3225 3383 2.308570 ACAGACCCATGTTGAATGGCTA 59.691 45.455 0.00 0.00 37.85 3.93
3237 3395 1.745320 GCGGACCGATACAGACCCAT 61.745 60.000 20.50 0.00 0.00 4.00
3238 3396 2.420568 GCGGACCGATACAGACCCA 61.421 63.158 20.50 0.00 0.00 4.51
3242 3400 1.000274 CATCATGCGGACCGATACAGA 60.000 52.381 20.50 7.72 0.00 3.41
3243 3401 1.422388 CATCATGCGGACCGATACAG 58.578 55.000 20.50 1.82 0.00 2.74
3250 3408 2.588877 CGGACCATCATGCGGACC 60.589 66.667 7.89 9.57 35.31 4.46
3258 3416 1.203052 GAAAGTACGTCCGGACCATCA 59.797 52.381 28.52 8.45 0.00 3.07
3260 3418 1.475682 GAGAAAGTACGTCCGGACCAT 59.524 52.381 28.52 19.08 0.00 3.55
3261 3419 0.883833 GAGAAAGTACGTCCGGACCA 59.116 55.000 28.52 14.17 0.00 4.02
3281 3439 7.093684 CCCTCTAGCTTTGTCTCTAGTTTACTT 60.094 40.741 0.00 0.00 35.13 2.24
3282 3440 6.378848 CCCTCTAGCTTTGTCTCTAGTTTACT 59.621 42.308 0.00 0.00 35.13 2.24
3284 3442 5.127356 GCCCTCTAGCTTTGTCTCTAGTTTA 59.873 44.000 0.00 0.00 35.13 2.01
3289 3447 3.390175 AGCCCTCTAGCTTTGTCTCTA 57.610 47.619 0.00 0.00 41.41 2.43
3290 3448 2.246091 AGCCCTCTAGCTTTGTCTCT 57.754 50.000 0.00 0.00 41.41 3.10
3299 3457 1.815840 GTCCGCAAAGCCCTCTAGC 60.816 63.158 0.00 0.00 0.00 3.42
3300 3458 1.519455 CGTCCGCAAAGCCCTCTAG 60.519 63.158 0.00 0.00 0.00 2.43
3302 3460 3.591254 GACGTCCGCAAAGCCCTCT 62.591 63.158 3.51 0.00 0.00 3.69
3304 3462 2.227089 CTAGACGTCCGCAAAGCCCT 62.227 60.000 13.01 0.00 0.00 5.19
3307 3465 1.077089 GGTCTAGACGTCCGCAAAGC 61.077 60.000 16.56 0.00 0.00 3.51
3308 3466 0.797249 CGGTCTAGACGTCCGCAAAG 60.797 60.000 16.56 2.65 37.50 2.77
3313 3471 2.403987 CAGCGGTCTAGACGTCCG 59.596 66.667 16.56 15.34 45.35 4.79
3340 3498 1.679305 GAGCCAGGACGGTCAGAGA 60.679 63.158 10.76 0.00 36.97 3.10
3341 3499 1.662438 GAGAGCCAGGACGGTCAGAG 61.662 65.000 10.76 0.00 36.97 3.35
3355 3513 1.004161 AGAAGGAAAGCTTGGGAGAGC 59.996 52.381 0.00 0.00 43.02 4.09
3357 3515 2.338809 TCAGAAGGAAAGCTTGGGAGA 58.661 47.619 0.00 0.00 0.00 3.71
3359 3517 2.881403 GCATCAGAAGGAAAGCTTGGGA 60.881 50.000 0.00 0.00 0.00 4.37
3365 3523 0.179179 GCGTGCATCAGAAGGAAAGC 60.179 55.000 0.00 0.00 0.00 3.51
3367 3525 0.960364 GGGCGTGCATCAGAAGGAAA 60.960 55.000 0.00 0.00 0.00 3.13
3370 3548 2.825836 GGGGCGTGCATCAGAAGG 60.826 66.667 0.00 0.00 0.00 3.46
3375 3553 4.089239 TAAGCGGGGCGTGCATCA 62.089 61.111 0.00 0.00 33.85 3.07
3388 3566 2.411547 GCATGAATATCACGCGGTAAGC 60.412 50.000 12.47 0.00 43.95 3.09
3397 3575 0.537143 TGGGCCGGCATGAATATCAC 60.537 55.000 30.85 6.06 0.00 3.06
3401 3579 1.391157 GCTTTGGGCCGGCATGAATA 61.391 55.000 30.85 6.91 34.27 1.75
3410 3588 2.105528 GATGCATGCTTTGGGCCG 59.894 61.111 20.33 0.00 40.92 6.13
3417 3595 3.204827 GCCGGACGATGCATGCTT 61.205 61.111 20.33 13.23 0.00 3.91
3422 3600 2.106074 GTCAATGCCGGACGATGCA 61.106 57.895 5.05 0.00 42.52 3.96
3424 3602 0.740868 AGTGTCAATGCCGGACGATG 60.741 55.000 5.05 0.00 38.10 3.84
3426 3604 0.948623 CAAGTGTCAATGCCGGACGA 60.949 55.000 5.05 0.00 38.10 4.20
3429 3607 2.324330 CGCAAGTGTCAATGCCGGA 61.324 57.895 5.05 0.00 39.39 5.14
3434 3612 3.236816 GGTCAAATCGCAAGTGTCAATG 58.763 45.455 0.00 0.00 39.48 2.82
3435 3613 2.095768 CGGTCAAATCGCAAGTGTCAAT 60.096 45.455 0.00 0.00 39.48 2.57
3441 3619 1.086696 CATCCGGTCAAATCGCAAGT 58.913 50.000 0.00 0.00 39.48 3.16
3443 3621 1.029408 CCCATCCGGTCAAATCGCAA 61.029 55.000 0.00 0.00 0.00 4.85
3444 3622 1.451207 CCCATCCGGTCAAATCGCA 60.451 57.895 0.00 0.00 0.00 5.10
3511 3689 3.764466 CCTCGGGAAGCTGCGTCT 61.764 66.667 14.90 0.00 0.00 4.18
3524 3702 1.376037 GGCTGGAGTTGGTTCCTCG 60.376 63.158 0.00 0.00 38.12 4.63
3544 3722 1.226379 CCGCTTTAATGTGGCGCAG 60.226 57.895 10.83 0.00 46.29 5.18
3581 3759 0.316204 TAAATAGTCGCGGCTAGGCC 59.684 55.000 26.04 0.00 46.75 5.19
3583 3761 2.059541 GCTTAAATAGTCGCGGCTAGG 58.940 52.381 26.04 13.40 0.00 3.02
3584 3762 2.726760 CTGCTTAAATAGTCGCGGCTAG 59.273 50.000 26.04 14.70 0.00 3.42
3585 3763 2.739292 CTGCTTAAATAGTCGCGGCTA 58.261 47.619 24.37 24.37 0.00 3.93
3586 3764 1.571919 CTGCTTAAATAGTCGCGGCT 58.428 50.000 20.79 20.79 0.00 5.52
3613 3791 3.876589 ATTGCGAAGTGGACGGCGT 62.877 57.895 14.65 14.65 0.00 5.68
3624 3802 4.081917 GGGGGAAAATGTTTAGATTGCGAA 60.082 41.667 0.00 0.00 0.00 4.70
3626 3804 3.780902 GGGGGAAAATGTTTAGATTGCG 58.219 45.455 0.00 0.00 0.00 4.85
3646 3824 1.541672 GGAGAGAGGAGGAGGAGGG 59.458 68.421 0.00 0.00 0.00 4.30
3651 3835 1.541672 GGAGGGGAGAGAGGAGGAG 59.458 68.421 0.00 0.00 0.00 3.69
3658 3842 1.942271 GGAGATGGGAGGGGAGAGA 59.058 63.158 0.00 0.00 0.00 3.10
3667 3851 0.834261 TGTTGTGGACGGAGATGGGA 60.834 55.000 0.00 0.00 0.00 4.37
3677 3861 1.213094 CCGTCGTCAGTGTTGTGGAC 61.213 60.000 0.00 0.00 0.00 4.02
3698 3882 4.660938 GCAGGGGCCCACGACTTT 62.661 66.667 27.72 0.00 0.00 2.66
3717 3901 4.681978 GGAACTGTCGCCTGCCGT 62.682 66.667 0.00 0.00 38.35 5.68
3721 3905 0.742281 CATCCTGGAACTGTCGCCTG 60.742 60.000 0.00 1.63 0.00 4.85
3727 3911 4.257890 AGCCCATCCTGGAACTGT 57.742 55.556 0.00 0.00 40.96 3.55


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.