Multiple sequence alignment - TraesCS4B01G066400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G066400 chr4B 100.000 5045 0 0 1 5045 59230238 59235282 0.000000e+00 9317.0
1 TraesCS4B01G066400 chr4D 92.662 2344 150 17 1575 3905 3612213 3609879 0.000000e+00 3356.0
2 TraesCS4B01G066400 chr4D 97.662 1155 27 0 1 1155 306851601 306850447 0.000000e+00 1984.0
3 TraesCS4B01G066400 chr4D 87.597 387 35 7 1159 1533 3612836 3612451 2.160000e-118 436.0
4 TraesCS4B01G066400 chr4D 92.857 280 7 2 3904 4172 3609299 3609022 1.320000e-105 394.0
5 TraesCS4B01G066400 chr4D 78.349 545 99 13 4281 4813 150757183 150756646 8.090000e-88 335.0
6 TraesCS4B01G066400 chr4D 80.000 200 36 2 4845 5044 371787873 371787678 1.460000e-30 145.0
7 TraesCS4B01G066400 chr5D 97.751 1156 26 0 1 1156 124851068 124852223 0.000000e+00 1991.0
8 TraesCS4B01G066400 chr5D 97.416 1161 28 2 1 1160 132420219 132419060 0.000000e+00 1977.0
9 TraesCS4B01G066400 chr5D 80.702 570 92 16 4281 4840 346528663 346528102 1.300000e-115 427.0
10 TraesCS4B01G066400 chr2D 97.502 1161 28 1 1 1160 447692847 447694007 0.000000e+00 1982.0
11 TraesCS4B01G066400 chr2D 86.747 415 47 7 1536 1949 566658475 566658882 5.950000e-124 455.0
12 TraesCS4B01G066400 chr2D 81.068 206 32 7 4843 5045 388518795 388518996 1.880000e-34 158.0
13 TraesCS4B01G066400 chr2D 85.294 68 6 2 4171 4234 642755499 642755566 3.260000e-07 67.6
14 TraesCS4B01G066400 chr2B 96.802 1157 36 1 1 1157 420195386 420196541 0.000000e+00 1930.0
15 TraesCS4B01G066400 chr2B 96.456 1157 41 0 1 1157 47241670 47242826 0.000000e+00 1910.0
16 TraesCS4B01G066400 chr2B 94.286 35 1 1 4249 4282 781322851 781322885 9.000000e-03 52.8
17 TraesCS4B01G066400 chr6A 96.797 1155 37 0 1 1155 484715494 484714340 0.000000e+00 1929.0
18 TraesCS4B01G066400 chr6A 80.488 492 78 14 4354 4834 180669145 180669629 1.340000e-95 361.0
19 TraesCS4B01G066400 chr6A 84.615 78 8 2 4174 4247 223115041 223115118 1.950000e-09 75.0
20 TraesCS4B01G066400 chr3A 96.629 1157 39 0 1 1157 575772722 575771566 0.000000e+00 1921.0
21 TraesCS4B01G066400 chr3A 82.074 569 84 11 4283 4842 526886615 526887174 2.130000e-128 470.0
22 TraesCS4B01G066400 chr3A 84.431 167 26 0 4874 5040 661785925 661786091 1.120000e-36 165.0
23 TraesCS4B01G066400 chr3B 96.623 1155 38 1 1 1155 399310974 399312127 0.000000e+00 1916.0
24 TraesCS4B01G066400 chr3B 87.591 411 41 8 1541 1950 617441412 617441011 7.650000e-128 468.0
25 TraesCS4B01G066400 chr7A 88.998 818 79 8 3065 3873 203040602 203039787 0.000000e+00 1002.0
26 TraesCS4B01G066400 chr7A 90.832 709 55 8 2291 2994 203041304 203040601 0.000000e+00 941.0
27 TraesCS4B01G066400 chr7A 95.536 224 10 0 3904 4127 203039572 203039349 4.800000e-95 359.0
28 TraesCS4B01G066400 chr7A 85.660 265 35 2 1227 1490 203042100 203041838 4.980000e-70 276.0
29 TraesCS4B01G066400 chr7A 80.247 81 16 0 4281 4361 612229051 612228971 1.520000e-05 62.1
30 TraesCS4B01G066400 chr7B 91.255 709 56 5 2291 2994 157218706 157217999 0.000000e+00 961.0
31 TraesCS4B01G066400 chr7B 87.101 814 68 17 3063 3873 157217999 157217220 0.000000e+00 887.0
32 TraesCS4B01G066400 chr7B 86.441 413 48 7 1540 1950 340320687 340320281 3.580000e-121 446.0
33 TraesCS4B01G066400 chr7B 78.984 571 97 20 4281 4840 277020620 277020062 7.980000e-98 368.0
34 TraesCS4B01G066400 chr7B 77.625 581 101 21 4281 4840 443861150 443860578 4.870000e-85 326.0
35 TraesCS4B01G066400 chr7B 92.035 226 16 2 3904 4127 157217005 157216780 2.930000e-82 316.0
36 TraesCS4B01G066400 chr7B 85.338 266 36 3 1227 1490 157219409 157219145 6.440000e-69 272.0
37 TraesCS4B01G066400 chr7B 89.320 103 11 0 4878 4980 496340315 496340417 4.100000e-26 130.0
38 TraesCS4B01G066400 chr7B 86.154 65 5 2 4174 4234 463156048 463156112 3.260000e-07 67.6
39 TraesCS4B01G066400 chr7B 83.824 68 7 2 4171 4234 456359058 456358991 1.520000e-05 62.1
40 TraesCS4B01G066400 chr7D 90.013 741 69 5 3063 3801 193585569 193584832 0.000000e+00 953.0
41 TraesCS4B01G066400 chr7D 90.590 712 53 10 2291 2994 193586274 193585569 0.000000e+00 931.0
42 TraesCS4B01G066400 chr7D 86.779 416 47 7 1536 1950 119936596 119936188 1.660000e-124 457.0
43 TraesCS4B01G066400 chr7D 87.713 293 14 4 3904 4174 193584575 193584283 6.300000e-84 322.0
44 TraesCS4B01G066400 chr7D 87.170 265 31 2 1227 1490 193587073 193586811 1.060000e-76 298.0
45 TraesCS4B01G066400 chr7D 79.327 208 40 2 4841 5045 136118696 136118903 5.270000e-30 143.0
46 TraesCS4B01G066400 chr7D 87.273 110 14 0 4877 4986 82607586 82607477 5.300000e-25 126.0
47 TraesCS4B01G066400 chr6B 87.923 414 42 7 1540 1951 602952709 602953116 9.820000e-132 481.0
48 TraesCS4B01G066400 chr6B 86.154 65 5 2 4174 4234 148417651 148417715 3.260000e-07 67.6
49 TraesCS4B01G066400 chr3D 82.394 568 82 14 4283 4842 404449847 404450404 3.530000e-131 479.0
50 TraesCS4B01G066400 chr3D 86.298 416 47 5 1538 1950 149850800 149850392 1.290000e-120 444.0
51 TraesCS4B01G066400 chr3D 80.462 563 79 11 4281 4835 381871214 381871753 7.870000e-108 401.0
52 TraesCS4B01G066400 chr3D 88.312 77 8 1 2009 2085 175402982 175403057 1.930000e-14 91.6
53 TraesCS4B01G066400 chr5B 87.105 411 45 3 1541 1950 419993166 419993569 4.600000e-125 459.0
54 TraesCS4B01G066400 chr5B 80.457 481 75 15 4371 4840 632340653 632340181 2.890000e-92 350.0
55 TraesCS4B01G066400 chr2A 86.650 412 47 2 1540 1950 703639894 703640298 2.770000e-122 449.0
56 TraesCS4B01G066400 chr2A 79.885 174 31 4 4874 5045 651977553 651977382 1.910000e-24 124.0
57 TraesCS4B01G066400 chr2A 86.154 65 5 2 4174 4234 569992760 569992824 3.260000e-07 67.6
58 TraesCS4B01G066400 chr5A 84.868 152 23 0 4843 4994 662959262 662959413 2.430000e-33 154.0
59 TraesCS4B01G066400 chr5A 83.784 74 12 0 2013 2086 662991548 662991621 2.520000e-08 71.3
60 TraesCS4B01G066400 chr5A 87.097 62 4 2 4177 4234 310573315 310573254 3.260000e-07 67.6
61 TraesCS4B01G066400 chr5A 85.484 62 5 3 4177 4234 682234435 682234374 1.520000e-05 62.1
62 TraesCS4B01G066400 chr5A 84.615 65 6 3 4174 4234 684525796 684525860 1.520000e-05 62.1
63 TraesCS4B01G066400 chr6D 81.410 156 26 1 4885 5040 312186440 312186288 1.910000e-24 124.0
64 TraesCS4B01G066400 chr1B 93.023 43 2 1 2008 2050 340994367 340994326 1.520000e-05 62.1
65 TraesCS4B01G066400 chr1B 94.595 37 1 1 2006 2041 522756520 522756556 7.060000e-04 56.5
66 TraesCS4B01G066400 chr1D 89.583 48 2 3 1997 2041 389798940 389798987 1.960000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G066400 chr4B 59230238 59235282 5044 False 9317.000000 9317 100.000000 1 5045 1 chr4B.!!$F1 5044
1 TraesCS4B01G066400 chr4D 306850447 306851601 1154 True 1984.000000 1984 97.662000 1 1155 1 chr4D.!!$R2 1154
2 TraesCS4B01G066400 chr4D 3609022 3612836 3814 True 1395.333333 3356 91.038667 1159 4172 3 chr4D.!!$R4 3013
3 TraesCS4B01G066400 chr4D 150756646 150757183 537 True 335.000000 335 78.349000 4281 4813 1 chr4D.!!$R1 532
4 TraesCS4B01G066400 chr5D 124851068 124852223 1155 False 1991.000000 1991 97.751000 1 1156 1 chr5D.!!$F1 1155
5 TraesCS4B01G066400 chr5D 132419060 132420219 1159 True 1977.000000 1977 97.416000 1 1160 1 chr5D.!!$R1 1159
6 TraesCS4B01G066400 chr5D 346528102 346528663 561 True 427.000000 427 80.702000 4281 4840 1 chr5D.!!$R2 559
7 TraesCS4B01G066400 chr2D 447692847 447694007 1160 False 1982.000000 1982 97.502000 1 1160 1 chr2D.!!$F2 1159
8 TraesCS4B01G066400 chr2B 420195386 420196541 1155 False 1930.000000 1930 96.802000 1 1157 1 chr2B.!!$F2 1156
9 TraesCS4B01G066400 chr2B 47241670 47242826 1156 False 1910.000000 1910 96.456000 1 1157 1 chr2B.!!$F1 1156
10 TraesCS4B01G066400 chr6A 484714340 484715494 1154 True 1929.000000 1929 96.797000 1 1155 1 chr6A.!!$R1 1154
11 TraesCS4B01G066400 chr3A 575771566 575772722 1156 True 1921.000000 1921 96.629000 1 1157 1 chr3A.!!$R1 1156
12 TraesCS4B01G066400 chr3A 526886615 526887174 559 False 470.000000 470 82.074000 4283 4842 1 chr3A.!!$F1 559
13 TraesCS4B01G066400 chr3B 399310974 399312127 1153 False 1916.000000 1916 96.623000 1 1155 1 chr3B.!!$F1 1154
14 TraesCS4B01G066400 chr7A 203039349 203042100 2751 True 644.500000 1002 90.256500 1227 4127 4 chr7A.!!$R2 2900
15 TraesCS4B01G066400 chr7B 157216780 157219409 2629 True 609.000000 961 88.932250 1227 4127 4 chr7B.!!$R5 2900
16 TraesCS4B01G066400 chr7B 277020062 277020620 558 True 368.000000 368 78.984000 4281 4840 1 chr7B.!!$R1 559
17 TraesCS4B01G066400 chr7B 443860578 443861150 572 True 326.000000 326 77.625000 4281 4840 1 chr7B.!!$R3 559
18 TraesCS4B01G066400 chr7D 193584283 193587073 2790 True 626.000000 953 88.871500 1227 4174 4 chr7D.!!$R3 2947
19 TraesCS4B01G066400 chr3D 404449847 404450404 557 False 479.000000 479 82.394000 4283 4842 1 chr3D.!!$F3 559
20 TraesCS4B01G066400 chr3D 381871214 381871753 539 False 401.000000 401 80.462000 4281 4835 1 chr3D.!!$F2 554

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
886 887 0.458543 AACGCATCGCAGTCTCGATT 60.459 50.0 4.95 0.0 45.81 3.34 F
2259 2592 0.391228 TGCCTCAACAGCGTGTCTTA 59.609 50.0 0.00 0.0 0.00 2.10 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2577 3079 0.249868 TGACCTCTGCCAGTCAAACG 60.250 55.0 0.0 0.0 39.96 3.60 R
4257 5392 0.245266 TAACTTCGCCGCTGTCATCA 59.755 50.0 0.0 0.0 0.00 3.07 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
51 52 4.622220 GCAAATGCAAGATCAACTGGGAAT 60.622 41.667 0.00 0.00 41.59 3.01
110 111 7.719633 GGTATCCTAAATATGAGGAAGTTTGCA 59.280 37.037 10.02 0.00 46.19 4.08
126 127 1.661821 GCATCCGCGCTTCGTATCT 60.662 57.895 5.56 0.00 36.19 1.98
219 220 9.059260 AGAATGATAAAAACATTTTTGCTGCTT 57.941 25.926 11.69 1.17 40.33 3.91
302 303 2.225091 TGGCATGAGACCCAAAGACATT 60.225 45.455 0.00 0.00 0.00 2.71
455 456 7.610305 GTCAACCTTTGGGAGAAATTATCTGTA 59.390 37.037 0.00 0.00 38.96 2.74
468 469 7.880195 AGAAATTATCTGTAGTGCAACTCAACT 59.120 33.333 0.00 0.00 41.97 3.16
512 513 5.819991 TCTTGGAAGCTTTCTAATGATGGT 58.180 37.500 6.25 0.00 29.47 3.55
591 592 3.222173 TGCAACAGTTGGTATGGAAGT 57.778 42.857 15.28 0.00 0.00 3.01
787 788 7.609918 TCGAGTTTGGGAAATGATCAAATCTTA 59.390 33.333 0.00 0.00 33.72 2.10
886 887 0.458543 AACGCATCGCAGTCTCGATT 60.459 50.000 4.95 0.00 45.81 3.34
913 914 7.148672 GGCGATGATGTCTCTTATTATGTTGAG 60.149 40.741 0.00 0.00 0.00 3.02
987 988 0.537828 GCCGGTTGGGGTTCTTGTTA 60.538 55.000 1.90 0.00 35.78 2.41
1016 1017 8.469200 AGAATCAAAGATGTTTCAAAGTGTTGA 58.531 29.630 3.35 0.00 42.12 3.18
1055 1056 6.597672 CCAAATATTTGAGTACTGTAGTGCCA 59.402 38.462 26.32 0.00 40.55 4.92
1178 1179 2.393271 ATCTTGACCGAAGCCTTGAG 57.607 50.000 0.00 0.00 0.00 3.02
1180 1181 1.000955 TCTTGACCGAAGCCTTGAGAC 59.999 52.381 0.00 0.00 0.00 3.36
1190 1191 1.605058 GCCTTGAGACGAGTAGGGCA 61.605 60.000 0.00 0.00 38.16 5.36
1203 1204 6.723339 ACGAGTAGGGCAGTAGAAGATATAT 58.277 40.000 0.00 0.00 0.00 0.86
1233 1248 5.409643 AACTGACAAGAAGATCGTGTTTG 57.590 39.130 0.71 0.00 39.12 2.93
1240 1255 6.590357 ACAAGAAGATCGTGTTTGTATTTCG 58.410 36.000 6.41 0.00 35.63 3.46
1247 1263 4.624015 TCGTGTTTGTATTTCGGTCTTCT 58.376 39.130 0.00 0.00 0.00 2.85
1286 1302 1.878522 CGGCAAGAAGATCGTCGGG 60.879 63.158 2.87 1.14 0.00 5.14
1397 1413 5.471456 GGAATCCAATGGACATCACTACATC 59.529 44.000 3.09 0.00 32.98 3.06
1422 1438 0.905357 AGACGACAAGGAGGGATTGG 59.095 55.000 0.00 0.00 31.76 3.16
1460 1477 2.043227 AGATCGTCCCAATTCCTCTCC 58.957 52.381 0.00 0.00 0.00 3.71
1524 1542 5.422214 CTAATTGTAGGAACAGAGGTGGT 57.578 43.478 0.00 0.00 36.83 4.16
1525 1543 6.540438 CTAATTGTAGGAACAGAGGTGGTA 57.460 41.667 0.00 0.00 36.83 3.25
1529 1547 5.160607 TGTAGGAACAGAGGTGGTATTTG 57.839 43.478 0.00 0.00 0.00 2.32
1537 1684 6.628919 ACAGAGGTGGTATTTGTTAACAAC 57.371 37.500 20.43 10.22 35.25 3.32
1545 1692 8.081025 GGTGGTATTTGTTAACAACGGAAATAA 58.919 33.333 20.43 4.12 35.28 1.40
1559 1706 4.340950 ACGGAAATAATTTGCTACCCATGG 59.659 41.667 4.14 4.14 0.00 3.66
1579 1726 1.821136 GTGGTAGCTACGTACAACCCT 59.179 52.381 17.48 0.00 0.00 4.34
1666 1880 0.976641 TCGTGAGTTTGGATCAGCCT 59.023 50.000 0.00 0.00 37.63 4.58
1680 1894 0.669318 CAGCCTGGCAAGCAAACATG 60.669 55.000 22.65 2.69 0.00 3.21
1681 1895 1.117142 AGCCTGGCAAGCAAACATGT 61.117 50.000 22.65 0.00 0.00 3.21
1688 1902 5.521010 CCTGGCAAGCAAACATGTAATTATG 59.479 40.000 0.00 0.00 0.00 1.90
1712 1926 5.115480 CCAAAAAGGCAAGCAAAAAGACTA 58.885 37.500 0.00 0.00 0.00 2.59
1714 1928 6.456853 CCAAAAAGGCAAGCAAAAAGACTAAC 60.457 38.462 0.00 0.00 0.00 2.34
1716 1930 5.337578 AAGGCAAGCAAAAAGACTAACAA 57.662 34.783 0.00 0.00 0.00 2.83
1732 1946 6.603599 AGACTAACAAAAGTGAGAAAAGGCTT 59.396 34.615 0.00 0.00 0.00 4.35
1807 2021 9.617975 CAAAGAGAAGTGATAAAAGGTCATTTC 57.382 33.333 3.96 3.96 40.52 2.17
1808 2022 7.929941 AGAGAAGTGATAAAAGGTCATTTCC 57.070 36.000 7.47 1.84 40.88 3.13
1826 2040 7.171337 GTCATTTCCATACAACAAAAATGCACT 59.829 33.333 0.00 0.00 37.28 4.40
1832 2046 2.677337 ACAACAAAAATGCACTTGTGCC 59.323 40.909 21.01 5.89 35.95 5.01
1861 2075 6.239487 CCCATAAGAAACCGACACCTCATATA 60.239 42.308 0.00 0.00 0.00 0.86
1862 2076 7.386851 CCATAAGAAACCGACACCTCATATAT 58.613 38.462 0.00 0.00 0.00 0.86
1863 2077 8.528643 CCATAAGAAACCGACACCTCATATATA 58.471 37.037 0.00 0.00 0.00 0.86
1898 2112 1.067635 CACTTATGCCAAAGGGTGTGC 60.068 52.381 0.82 0.00 36.17 4.57
1937 2151 3.515630 CGTAGCTATCACCATGCATAGG 58.484 50.000 0.00 6.24 0.00 2.57
1959 2173 4.807304 GGAAATCGCCTCTCGTTAACAATA 59.193 41.667 6.39 0.00 39.67 1.90
1974 2188 7.013529 CGTTAACAATACTGTAAAGCAACTCC 58.986 38.462 6.39 0.00 33.45 3.85
1986 2200 2.251818 AGCAACTCCTGTGCTTCTCTA 58.748 47.619 0.00 0.00 35.02 2.43
2024 2239 1.004979 TCCCCCGGTCCAAAATAAGTG 59.995 52.381 0.00 0.00 0.00 3.16
2077 2292 4.759693 ACCAGAACACTTATTTTGCATCGA 59.240 37.500 0.00 0.00 0.00 3.59
2080 2295 5.796935 CAGAACACTTATTTTGCATCGAAGG 59.203 40.000 0.00 0.00 0.00 3.46
2130 2345 7.651304 CAGACACAAATACCAAAATGCTAAACA 59.349 33.333 0.00 0.00 0.00 2.83
2158 2487 9.815306 AGTCTATAATGCTATGGTATATCCGAT 57.185 33.333 0.00 0.00 39.52 4.18
2166 2495 3.961480 TGGTATATCCGATTGCTCTGG 57.039 47.619 0.00 0.00 39.52 3.86
2247 2578 5.018809 AGATTTGCTCCTTATTTGCCTCAA 58.981 37.500 0.00 0.00 0.00 3.02
2256 2589 0.593128 ATTTGCCTCAACAGCGTGTC 59.407 50.000 0.00 0.00 0.00 3.67
2259 2592 0.391228 TGCCTCAACAGCGTGTCTTA 59.609 50.000 0.00 0.00 0.00 2.10
2304 2779 2.972021 TCATGAGTGTTCTGAACCCTGA 59.028 45.455 17.26 6.36 0.00 3.86
2561 3063 4.023365 GGCTCAGACCATATTGATTTGCTC 60.023 45.833 0.00 0.00 0.00 4.26
2598 3102 0.249868 TTTGACTGGCAGAGGTCACG 60.250 55.000 23.66 0.00 41.36 4.35
2688 3193 2.359900 CTGGCTATCAACAGGTTGTCC 58.640 52.381 11.55 9.32 41.16 4.02
2792 3297 2.949177 TTGGCAGGCTCTTACTTCAA 57.051 45.000 0.00 0.00 0.00 2.69
2825 3330 3.341823 CTTCAACTGCAACCTGCTCTAT 58.658 45.455 0.00 0.00 45.31 1.98
2840 3345 6.053650 CCTGCTCTATCATGACAGAATTCAA 58.946 40.000 5.01 0.00 0.00 2.69
2849 3354 6.851609 TCATGACAGAATTCAAATTAACCCG 58.148 36.000 8.44 0.00 0.00 5.28
2875 3380 3.085952 TGAGAAAGAAATTGGGGCGAT 57.914 42.857 0.00 0.00 0.00 4.58
2948 3453 5.201713 TCAACACACCTCTTACTGAGAAG 57.798 43.478 0.00 0.00 45.39 2.85
2980 3487 4.690748 TCCATTCATCACACTCGTTCTTTC 59.309 41.667 0.00 0.00 0.00 2.62
2988 3495 7.387673 TCATCACACTCGTTCTTTCACATTATT 59.612 33.333 0.00 0.00 0.00 1.40
2991 3498 8.402472 TCACACTCGTTCTTTCACATTATTTTT 58.598 29.630 0.00 0.00 0.00 1.94
3011 3518 5.945466 TTTTACCACTTCCGTTCCATAAC 57.055 39.130 0.00 0.00 0.00 1.89
3013 3520 3.053831 ACCACTTCCGTTCCATAACTG 57.946 47.619 0.00 0.00 33.15 3.16
3021 3528 3.562141 TCCGTTCCATAACTGTTGTTGTG 59.438 43.478 2.69 0.00 42.48 3.33
3054 3561 9.301153 GCTAAAACCACAACAATAATTATGGAG 57.699 33.333 6.86 1.84 0.00 3.86
3056 3563 6.849085 AACCACAACAATAATTATGGAGCA 57.151 33.333 6.86 0.00 0.00 4.26
3059 3566 6.835488 ACCACAACAATAATTATGGAGCAGAT 59.165 34.615 6.86 0.00 0.00 2.90
3216 3723 0.251033 TTGCTGATGCTTGCTCCAGT 60.251 50.000 13.07 0.00 40.48 4.00
3245 3752 3.500448 TGCTGGTACCATTCTTTCACA 57.500 42.857 16.75 1.31 0.00 3.58
3298 3806 9.817809 TTCTGTAGGATGTGTATCTAATTGTTC 57.182 33.333 0.00 0.00 33.68 3.18
3322 3830 5.395657 CCTGTTGAGGTCTATGAAGCACATA 60.396 44.000 4.14 4.14 36.22 2.29
3327 3835 9.109393 GTTGAGGTCTATGAAGCACATAATTTA 57.891 33.333 5.42 0.00 40.39 1.40
3424 3933 9.793245 GCAGTAACATAAGTAATTAACTATGCG 57.207 33.333 12.08 0.00 37.50 4.73
3430 3939 9.811995 ACATAAGTAATTAACTATGCGAGTTCA 57.188 29.630 7.07 0.00 45.81 3.18
3472 3988 8.050778 AGAGTTGACAAAAACAAAGTGTGATA 57.949 30.769 0.00 0.00 32.21 2.15
3473 3989 7.968405 AGAGTTGACAAAAACAAAGTGTGATAC 59.032 33.333 0.00 0.00 32.21 2.24
3531 4047 7.459795 TGCCATGACACTTGTTTATTTGATA 57.540 32.000 0.00 0.00 0.00 2.15
3588 4104 9.716531 TCAAATATTAGGAGAATGATGCAGTAG 57.283 33.333 0.00 0.00 0.00 2.57
3775 4292 0.959372 ATGCACAGGTCAGCTTCTGC 60.959 55.000 8.03 0.00 40.05 4.26
3819 4336 7.569111 AGTCCTTAGGGTGTATCATCATTAACT 59.431 37.037 0.00 0.00 0.00 2.24
3883 4407 3.296322 TGGACAAATTTTGATCACCGC 57.704 42.857 15.81 0.00 0.00 5.68
3884 4408 2.625314 TGGACAAATTTTGATCACCGCA 59.375 40.909 15.81 1.73 0.00 5.69
3893 4417 2.112380 TGATCACCGCACATCAATGT 57.888 45.000 0.00 0.00 42.84 2.71
3994 5105 3.864983 AAGGGCGAGGACTTCCCCA 62.865 63.158 11.89 0.00 40.97 4.96
4060 5179 1.203225 AGTAGTAACCCAACCCTCGGT 60.203 52.381 0.00 0.00 37.65 4.69
4069 5188 0.888736 CAACCCTCGGTGTTGCATGA 60.889 55.000 0.00 0.00 36.95 3.07
4092 5211 9.567931 ATGATAACATATCTGAAGCGAGGTGCA 62.568 40.741 0.00 0.00 39.68 4.57
4253 5388 9.574516 AAATAGAAATTATAGCGGATGGAAAGT 57.425 29.630 0.00 0.00 0.00 2.66
4254 5389 9.574516 AATAGAAATTATAGCGGATGGAAAGTT 57.425 29.630 0.00 0.00 0.00 2.66
4255 5390 7.264373 AGAAATTATAGCGGATGGAAAGTTG 57.736 36.000 0.00 0.00 0.00 3.16
4256 5391 6.263168 AGAAATTATAGCGGATGGAAAGTTGG 59.737 38.462 0.00 0.00 0.00 3.77
4257 5392 4.497291 TTATAGCGGATGGAAAGTTGGT 57.503 40.909 0.00 0.00 0.00 3.67
4258 5393 2.107950 TAGCGGATGGAAAGTTGGTG 57.892 50.000 0.00 0.00 0.00 4.17
4259 5394 0.400213 AGCGGATGGAAAGTTGGTGA 59.600 50.000 0.00 0.00 0.00 4.02
4260 5395 1.004745 AGCGGATGGAAAGTTGGTGAT 59.995 47.619 0.00 0.00 0.00 3.06
4261 5396 1.133025 GCGGATGGAAAGTTGGTGATG 59.867 52.381 0.00 0.00 0.00 3.07
4262 5397 2.710377 CGGATGGAAAGTTGGTGATGA 58.290 47.619 0.00 0.00 0.00 2.92
4263 5398 2.420022 CGGATGGAAAGTTGGTGATGAC 59.580 50.000 0.00 0.00 0.00 3.06
4264 5399 3.420893 GGATGGAAAGTTGGTGATGACA 58.579 45.455 0.00 0.00 0.00 3.58
4265 5400 3.441572 GGATGGAAAGTTGGTGATGACAG 59.558 47.826 0.00 0.00 0.00 3.51
4266 5401 2.229792 TGGAAAGTTGGTGATGACAGC 58.770 47.619 0.00 0.00 43.75 4.40
4267 5402 1.197721 GGAAAGTTGGTGATGACAGCG 59.802 52.381 0.00 0.00 46.03 5.18
4268 5403 1.197721 GAAAGTTGGTGATGACAGCGG 59.802 52.381 0.00 0.00 46.03 5.52
4269 5404 1.237285 AAGTTGGTGATGACAGCGGC 61.237 55.000 0.00 0.00 46.03 6.53
4270 5405 2.741985 TTGGTGATGACAGCGGCG 60.742 61.111 0.51 0.51 46.03 6.46
4271 5406 3.233259 TTGGTGATGACAGCGGCGA 62.233 57.895 12.98 0.00 46.03 5.54
4272 5407 2.434185 GGTGATGACAGCGGCGAA 60.434 61.111 12.98 0.00 34.87 4.70
4273 5408 2.456119 GGTGATGACAGCGGCGAAG 61.456 63.158 12.98 3.84 34.87 3.79
4274 5409 1.738099 GTGATGACAGCGGCGAAGT 60.738 57.895 12.98 7.93 0.00 3.01
4275 5410 1.005037 TGATGACAGCGGCGAAGTT 60.005 52.632 12.98 0.00 0.00 2.66
4276 5411 0.245266 TGATGACAGCGGCGAAGTTA 59.755 50.000 12.98 4.92 0.00 2.24
4277 5412 1.134818 TGATGACAGCGGCGAAGTTAT 60.135 47.619 12.98 10.22 0.00 1.89
4278 5413 1.933853 GATGACAGCGGCGAAGTTATT 59.066 47.619 12.98 0.00 0.00 1.40
4279 5414 1.075542 TGACAGCGGCGAAGTTATTG 58.924 50.000 12.98 0.00 0.00 1.90
4308 5444 2.201921 GGTTTCCCCTCTGGTCTTTC 57.798 55.000 0.00 0.00 34.77 2.62
4315 5451 4.735132 TCTGGTCTTTCGCCGCCG 62.735 66.667 0.00 0.00 0.00 6.46
4364 5510 5.888724 TCTACGATTGGATCTCTCTCTGTTT 59.111 40.000 0.00 0.00 0.00 2.83
4404 5552 1.318576 CTGTTTCTGGCCGAAAACCT 58.681 50.000 22.86 0.00 42.87 3.50
4408 5556 2.863740 GTTTCTGGCCGAAAACCTTTTG 59.136 45.455 19.61 0.00 42.87 2.44
4420 5568 7.699391 GCCGAAAACCTTTTGTTATATTCCTAC 59.301 37.037 0.00 0.00 35.67 3.18
4423 5571 9.569167 GAAAACCTTTTGTTATATTCCTACAGC 57.431 33.333 0.00 0.00 35.67 4.40
4431 5579 6.978338 TGTTATATTCCTACAGCTCCGTAAG 58.022 40.000 0.00 0.00 0.00 2.34
4441 5589 0.458669 GCTCCGTAAGTCCGATTGGA 59.541 55.000 0.00 0.00 43.88 3.53
4487 5635 6.753913 ATCCAGATATTAGCTTCCTTGTGA 57.246 37.500 0.00 0.00 0.00 3.58
4571 5726 2.669569 GCGCTGAGCTTGTGGGAA 60.670 61.111 1.78 0.00 44.04 3.97
4601 5756 6.875926 GCATTATCTTGCGTTGATTCTTTT 57.124 33.333 0.00 0.00 32.06 2.27
4681 5840 7.650903 GGACTTCATTTGATATGGATTTTCTGC 59.349 37.037 0.00 0.00 0.00 4.26
4684 5845 9.373603 CTTCATTTGATATGGATTTTCTGCAAA 57.626 29.630 0.00 0.00 0.00 3.68
4685 5846 9.722184 TTCATTTGATATGGATTTTCTGCAAAA 57.278 25.926 0.00 0.00 35.92 2.44
4690 5851 8.309163 TGATATGGATTTTCTGCAAAACAAAC 57.691 30.769 0.00 0.00 34.24 2.93
4705 5867 7.484007 TGCAAAACAAACAAATATGCAACAAAG 59.516 29.630 0.00 0.00 39.15 2.77
4735 5897 3.187227 CGCATTGGGCACTAGATCAATAC 59.813 47.826 0.00 0.00 45.17 1.89
4742 5904 7.136822 TGGGCACTAGATCAATACATTAGTT 57.863 36.000 0.00 0.00 0.00 2.24
4802 5965 7.912250 GTGAAAGTTGTAGAATATTGGCATGAG 59.088 37.037 0.00 0.00 0.00 2.90
4850 6013 3.309675 CGAATCATCGCCACCGTC 58.690 61.111 0.00 0.00 42.96 4.79
4851 6014 2.576893 CGAATCATCGCCACCGTCG 61.577 63.158 0.00 0.00 42.96 5.12
4852 6015 2.202878 AATCATCGCCACCGTCGG 60.203 61.111 10.48 10.48 35.54 4.79
4873 6036 2.752091 CAGACTGCTGCTGCTACAG 58.248 57.895 17.00 17.14 40.80 2.74
4882 6045 2.510238 CTGCTACAGCGGCTGGTC 60.510 66.667 31.38 19.89 45.83 4.02
4883 6046 4.435436 TGCTACAGCGGCTGGTCG 62.435 66.667 31.38 19.86 45.83 4.79
4884 6047 4.436998 GCTACAGCGGCTGGTCGT 62.437 66.667 31.38 14.72 35.51 4.34
4885 6048 2.202623 CTACAGCGGCTGGTCGTC 60.203 66.667 31.38 0.00 35.51 4.20
4886 6049 3.701604 CTACAGCGGCTGGTCGTCC 62.702 68.421 31.38 0.00 35.51 4.79
4888 6051 4.803426 CAGCGGCTGGTCGTCCTC 62.803 72.222 22.11 0.00 34.23 3.71
4891 6054 4.477975 CGGCTGGTCGTCCTCGTC 62.478 72.222 0.00 0.00 38.33 4.20
4892 6055 4.477975 GGCTGGTCGTCCTCGTCG 62.478 72.222 0.00 0.00 38.33 5.12
4893 6056 3.735029 GCTGGTCGTCCTCGTCGT 61.735 66.667 0.00 0.00 38.33 4.34
4894 6057 2.952245 CTGGTCGTCCTCGTCGTT 59.048 61.111 0.00 0.00 38.33 3.85
4895 6058 1.442184 CTGGTCGTCCTCGTCGTTG 60.442 63.158 0.00 0.00 38.33 4.10
4896 6059 2.126580 GGTCGTCCTCGTCGTTGG 60.127 66.667 0.00 0.00 38.33 3.77
4897 6060 2.620112 GGTCGTCCTCGTCGTTGGA 61.620 63.158 5.82 5.82 38.33 3.53
4898 6061 1.154263 GTCGTCCTCGTCGTTGGAG 60.154 63.158 9.33 5.55 38.33 3.86
4905 6068 3.259592 TCGTCGTTGGAGGAGATGA 57.740 52.632 0.00 0.00 33.44 2.92
4906 6069 0.809385 TCGTCGTTGGAGGAGATGAC 59.191 55.000 0.00 0.00 33.44 3.06
4907 6070 0.523546 CGTCGTTGGAGGAGATGACG 60.524 60.000 4.07 4.07 45.26 4.35
4908 6071 0.809385 GTCGTTGGAGGAGATGACGA 59.191 55.000 0.00 0.00 40.03 4.20
4909 6072 1.405821 GTCGTTGGAGGAGATGACGAT 59.594 52.381 0.12 0.00 43.46 3.73
4910 6073 1.676529 TCGTTGGAGGAGATGACGATC 59.323 52.381 0.00 0.00 37.76 3.69
4911 6074 1.678627 CGTTGGAGGAGATGACGATCT 59.321 52.381 0.00 0.00 42.02 2.75
4916 6079 4.955089 GAGATGACGATCTCCGCC 57.045 61.111 3.29 0.00 46.40 6.13
4917 6080 2.336341 GAGATGACGATCTCCGCCT 58.664 57.895 3.29 0.00 46.40 5.52
4918 6081 0.671251 GAGATGACGATCTCCGCCTT 59.329 55.000 3.29 0.00 46.40 4.35
4919 6082 0.671251 AGATGACGATCTCCGCCTTC 59.329 55.000 0.00 0.00 43.32 3.46
4920 6083 0.671251 GATGACGATCTCCGCCTTCT 59.329 55.000 0.00 0.00 43.32 2.85
4921 6084 1.067821 GATGACGATCTCCGCCTTCTT 59.932 52.381 0.00 0.00 43.32 2.52
4922 6085 0.456221 TGACGATCTCCGCCTTCTTC 59.544 55.000 0.00 0.00 43.32 2.87
4923 6086 0.592754 GACGATCTCCGCCTTCTTCG 60.593 60.000 0.00 0.00 43.32 3.79
4924 6087 1.030488 ACGATCTCCGCCTTCTTCGA 61.030 55.000 0.00 0.00 43.32 3.71
4925 6088 0.317436 CGATCTCCGCCTTCTTCGAG 60.317 60.000 0.00 0.00 0.00 4.04
4926 6089 0.031449 GATCTCCGCCTTCTTCGAGG 59.969 60.000 0.00 0.00 39.93 4.63
4927 6090 0.395862 ATCTCCGCCTTCTTCGAGGA 60.396 55.000 0.00 0.00 39.25 3.71
4928 6091 1.435515 CTCCGCCTTCTTCGAGGAG 59.564 63.158 0.00 0.00 41.91 3.69
4929 6092 2.202810 CCGCCTTCTTCGAGGAGC 60.203 66.667 0.00 0.00 39.25 4.70
4930 6093 2.202810 CGCCTTCTTCGAGGAGCC 60.203 66.667 0.00 0.00 39.25 4.70
4931 6094 2.202810 GCCTTCTTCGAGGAGCCG 60.203 66.667 0.00 0.00 39.25 5.52
4932 6095 2.202810 CCTTCTTCGAGGAGCCGC 60.203 66.667 0.00 0.00 39.25 6.53
4933 6096 2.202810 CTTCTTCGAGGAGCCGCC 60.203 66.667 0.00 0.00 0.00 6.13
4934 6097 3.724914 CTTCTTCGAGGAGCCGCCC 62.725 68.421 0.00 0.00 37.37 6.13
4949 6112 4.570663 CCCGGCGATGAGGACGAC 62.571 72.222 9.30 0.00 42.31 4.34
4954 6117 4.570663 CGATGAGGACGACGGCCC 62.571 72.222 18.37 8.84 0.00 5.80
4955 6118 4.222847 GATGAGGACGACGGCCCC 62.223 72.222 18.37 4.71 0.00 5.80
4987 6150 2.890474 GCGTCGCCACAATCCGAT 60.890 61.111 5.75 0.00 35.76 4.18
4988 6151 3.005898 CGTCGCCACAATCCGATG 58.994 61.111 0.00 0.00 35.76 3.84
4989 6152 2.525248 CGTCGCCACAATCCGATGG 61.525 63.158 0.00 0.00 36.97 3.51
4990 6153 1.153449 GTCGCCACAATCCGATGGA 60.153 57.895 0.00 0.00 38.34 3.41
4991 6154 1.143838 TCGCCACAATCCGATGGAG 59.856 57.895 0.00 0.00 38.34 3.86
4992 6155 2.537560 CGCCACAATCCGATGGAGC 61.538 63.158 0.00 0.00 38.34 4.70
4993 6156 2.189499 GCCACAATCCGATGGAGCC 61.189 63.158 0.00 0.00 38.34 4.70
4994 6157 1.526917 CCACAATCCGATGGAGCCC 60.527 63.158 0.00 0.00 38.34 5.19
4995 6158 1.224315 CACAATCCGATGGAGCCCA 59.776 57.895 0.00 0.00 38.19 5.36
5005 6168 3.746957 GGAGCCCATCCTGGAACT 58.253 61.111 0.00 0.00 45.64 3.01
5006 6169 1.225704 GGAGCCCATCCTGGAACTG 59.774 63.158 0.00 0.00 45.64 3.16
5007 6170 1.566298 GGAGCCCATCCTGGAACTGT 61.566 60.000 0.00 0.00 45.64 3.55
5008 6171 0.107459 GAGCCCATCCTGGAACTGTC 60.107 60.000 0.00 0.00 40.96 3.51
5009 6172 1.450312 GCCCATCCTGGAACTGTCG 60.450 63.158 0.00 0.00 40.96 4.35
5010 6173 1.450312 CCCATCCTGGAACTGTCGC 60.450 63.158 0.00 0.00 40.96 5.19
5011 6174 1.450312 CCATCCTGGAACTGTCGCC 60.450 63.158 0.00 0.00 40.96 5.54
5012 6175 1.599047 CATCCTGGAACTGTCGCCT 59.401 57.895 0.00 0.00 0.00 5.52
5013 6176 0.742281 CATCCTGGAACTGTCGCCTG 60.742 60.000 0.00 1.63 0.00 4.85
5014 6177 2.527951 ATCCTGGAACTGTCGCCTGC 62.528 60.000 0.00 0.00 0.00 4.85
5015 6178 2.743928 CTGGAACTGTCGCCTGCC 60.744 66.667 2.04 0.00 0.00 4.85
5016 6179 4.680237 TGGAACTGTCGCCTGCCG 62.680 66.667 2.04 0.00 38.61 5.69
5017 6180 4.681978 GGAACTGTCGCCTGCCGT 62.682 66.667 0.00 0.00 38.35 5.68
5018 6181 3.112709 GAACTGTCGCCTGCCGTC 61.113 66.667 0.00 0.00 38.35 4.79
5036 6199 4.660938 GCAGGGGCCCACGACTTT 62.661 66.667 27.72 0.00 0.00 2.66
5037 6200 2.359975 CAGGGGCCCACGACTTTC 60.360 66.667 27.72 2.59 0.00 2.62
5038 6201 3.647771 AGGGGCCCACGACTTTCC 61.648 66.667 27.72 1.71 0.00 3.13
5039 6202 4.735358 GGGGCCCACGACTTTCCC 62.735 72.222 26.86 0.00 36.25 3.97
5041 6204 4.324991 GGCCCACGACTTTCCCGT 62.325 66.667 0.00 0.00 41.36 5.28
5042 6205 2.741211 GCCCACGACTTTCCCGTC 60.741 66.667 0.00 0.00 38.29 4.79
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
51 52 1.623811 GACCTTGGACTTGCAGACCTA 59.376 52.381 7.26 0.34 31.23 3.08
126 127 1.187974 CATTCTGCCCAAAGCCATCA 58.812 50.000 0.00 0.00 42.71 3.07
219 220 2.805897 CAAGCAACACCTTGGTGGA 58.194 52.632 21.98 0.00 38.15 4.02
302 303 1.203001 AGGTCAAAAATCTTCGGGGCA 60.203 47.619 0.00 0.00 0.00 5.36
455 456 0.597637 CGTCGGAGTTGAGTTGCACT 60.598 55.000 0.00 0.00 0.00 4.40
468 469 1.337071 GATAGAATCAGCCACGTCGGA 59.663 52.381 8.04 0.00 36.56 4.55
512 513 1.798735 CGAGGACGCGGAGTAAGAA 59.201 57.895 12.47 0.00 0.00 2.52
584 585 1.575447 GGGGAGCCCAGAACTTCCAT 61.575 60.000 8.02 0.00 44.65 3.41
787 788 0.963962 CACATCAACCAAGCCAAGCT 59.036 50.000 0.00 0.00 42.56 3.74
885 886 6.524734 ACATAATAAGAGACATCATCGCCAA 58.475 36.000 0.00 0.00 0.00 4.52
886 887 6.101650 ACATAATAAGAGACATCATCGCCA 57.898 37.500 0.00 0.00 0.00 5.69
913 914 2.491693 TCGTTCCAAATTTCCCATGAGC 59.508 45.455 0.00 0.00 0.00 4.26
987 988 8.253113 ACACTTTGAAACATCTTTGATTCTTGT 58.747 29.630 0.00 0.00 36.07 3.16
1055 1056 5.573282 CGAATTACAAAGACATCACTCTCGT 59.427 40.000 0.00 0.00 0.00 4.18
1171 1172 1.142097 GCCCTACTCGTCTCAAGGC 59.858 63.158 0.00 0.00 0.00 4.35
1175 1176 1.558294 TCTACTGCCCTACTCGTCTCA 59.442 52.381 0.00 0.00 0.00 3.27
1178 1179 2.641305 TCTTCTACTGCCCTACTCGTC 58.359 52.381 0.00 0.00 0.00 4.20
1180 1181 8.911918 ATATATATCTTCTACTGCCCTACTCG 57.088 38.462 0.00 0.00 0.00 4.18
1203 1204 6.377429 ACGATCTTCTTGTCAGTTCCACTATA 59.623 38.462 0.00 0.00 0.00 1.31
1207 1208 3.430218 CACGATCTTCTTGTCAGTTCCAC 59.570 47.826 0.00 0.00 0.00 4.02
1217 1232 6.015504 CCGAAATACAAACACGATCTTCTTG 58.984 40.000 0.00 0.00 0.00 3.02
1219 1234 5.235516 ACCGAAATACAAACACGATCTTCT 58.764 37.500 0.00 0.00 0.00 2.85
1220 1235 5.347907 AGACCGAAATACAAACACGATCTTC 59.652 40.000 0.00 0.00 0.00 2.87
1221 1236 5.235516 AGACCGAAATACAAACACGATCTT 58.764 37.500 0.00 0.00 0.00 2.40
1222 1237 4.817517 AGACCGAAATACAAACACGATCT 58.182 39.130 0.00 0.00 0.00 2.75
1224 1239 5.120208 CAGAAGACCGAAATACAAACACGAT 59.880 40.000 0.00 0.00 0.00 3.73
1225 1240 4.446385 CAGAAGACCGAAATACAAACACGA 59.554 41.667 0.00 0.00 0.00 4.35
1233 1248 5.103290 TGCAAAACAGAAGACCGAAATAC 57.897 39.130 0.00 0.00 0.00 1.89
1365 1381 0.396695 CCATTGGATTCCAGCCAGCT 60.397 55.000 5.36 0.00 36.64 4.24
1366 1382 0.396139 TCCATTGGATTCCAGCCAGC 60.396 55.000 5.36 0.00 36.64 4.85
1422 1438 1.476891 TCTTGGATACTGACCGCTGTC 59.523 52.381 0.64 0.64 42.12 3.51
1506 1524 5.072600 ACAAATACCACCTCTGTTCCTACAA 59.927 40.000 0.00 0.00 32.92 2.41
1517 1535 4.756135 TCCGTTGTTAACAAATACCACCTC 59.244 41.667 22.14 6.21 37.63 3.85
1525 1543 9.267084 AGCAAATTATTTCCGTTGTTAACAAAT 57.733 25.926 22.14 13.88 37.63 2.32
1529 1547 7.274033 GGGTAGCAAATTATTTCCGTTGTTAAC 59.726 37.037 0.00 0.00 0.00 2.01
1537 1684 4.340950 ACCATGGGTAGCAAATTATTTCCG 59.659 41.667 18.09 0.00 32.11 4.30
1559 1706 1.821136 AGGGTTGTACGTAGCTACCAC 59.179 52.381 18.16 15.65 34.28 4.16
1640 1787 5.525378 GCTGATCCAAACTCACGATATTCTT 59.475 40.000 0.00 0.00 0.00 2.52
1642 1789 4.212214 GGCTGATCCAAACTCACGATATTC 59.788 45.833 0.00 0.00 34.01 1.75
1653 1867 0.529378 CTTGCCAGGCTGATCCAAAC 59.471 55.000 17.94 0.00 37.29 2.93
1666 1880 4.869297 GCATAATTACATGTTTGCTTGCCA 59.131 37.500 2.30 0.00 0.00 4.92
1712 1926 7.364522 GAAAAAGCCTTTTCTCACTTTTGTT 57.635 32.000 12.37 0.00 44.73 2.83
1732 1946 4.396790 AGTGCCTTTTCGTTGTGTAGAAAA 59.603 37.500 3.79 3.79 42.06 2.29
1778 1992 7.509546 TGACCTTTTATCACTTCTCTTTGTCT 58.490 34.615 0.00 0.00 0.00 3.41
1785 1999 7.687941 TGGAAATGACCTTTTATCACTTCTC 57.312 36.000 0.00 0.00 33.79 2.87
1807 2021 5.976586 CACAAGTGCATTTTTGTTGTATGG 58.023 37.500 10.36 0.00 35.46 2.74
1832 2046 3.377172 GGTGTCGGTTTCTTATGGGATTG 59.623 47.826 0.00 0.00 0.00 2.67
1898 2112 3.740397 CACACATGGTGGCGGCTG 61.740 66.667 11.43 1.90 44.04 4.85
1916 2130 3.193479 TCCTATGCATGGTGATAGCTACG 59.807 47.826 10.16 0.00 0.00 3.51
1924 2138 2.221169 GCGATTTCCTATGCATGGTGA 58.779 47.619 10.16 3.24 0.00 4.02
1937 2151 4.859629 ATTGTTAACGAGAGGCGATTTC 57.140 40.909 1.30 0.00 44.57 2.17
1959 2173 2.158755 AGCACAGGAGTTGCTTTACAGT 60.159 45.455 0.00 0.00 35.02 3.55
1974 2188 6.492007 AATTGTTCACATAGAGAAGCACAG 57.508 37.500 0.00 0.00 0.00 3.66
1986 2200 6.041523 CCGGGGGATTAATAAATTGTTCACAT 59.958 38.462 0.00 0.00 0.00 3.21
2058 2273 5.095490 CCCTTCGATGCAAAATAAGTGTTC 58.905 41.667 0.00 0.00 0.00 3.18
2064 2279 7.771361 TGTATTACTCCCTTCGATGCAAAATAA 59.229 33.333 0.00 0.00 0.00 1.40
2065 2280 7.276658 TGTATTACTCCCTTCGATGCAAAATA 58.723 34.615 0.00 0.00 0.00 1.40
2108 2323 9.638239 ACTATGTTTAGCATTTTGGTATTTGTG 57.362 29.630 0.00 0.00 38.94 3.33
2176 2505 4.717233 ATTATTTTTGCCGTCATCAGCA 57.283 36.364 0.00 0.00 37.18 4.41
2285 2621 2.975489 ACTCAGGGTTCAGAACACTCAT 59.025 45.455 15.70 1.06 42.84 2.90
2372 2874 5.525012 TCATTTATTCAGGCATCAAGAGTCG 59.475 40.000 0.00 0.00 0.00 4.18
2426 2928 4.521639 AGAACATGCATGTCTTCAATGTGT 59.478 37.500 31.45 12.71 40.80 3.72
2577 3079 0.249868 TGACCTCTGCCAGTCAAACG 60.250 55.000 0.00 0.00 39.96 3.60
2598 3102 1.069668 ACAGACACGGTGTTACTTCCC 59.930 52.381 15.94 0.36 0.00 3.97
2613 3117 1.066286 AGCTGATCTTCTGCCACAGAC 60.066 52.381 0.00 0.00 40.46 3.51
2688 3193 3.581755 CTGCAACATTCCATTCACCTTG 58.418 45.455 0.00 0.00 0.00 3.61
2792 3297 0.400594 AGTTGAAGGGCTTAAGGCGT 59.599 50.000 21.44 19.52 42.94 5.68
2825 3330 6.127758 CCGGGTTAATTTGAATTCTGTCATGA 60.128 38.462 7.05 0.00 0.00 3.07
2840 3345 3.713826 TTCTCAAGCTCCGGGTTAATT 57.286 42.857 0.00 0.00 0.00 1.40
2849 3354 3.194329 CCCCAATTTCTTTCTCAAGCTCC 59.806 47.826 0.00 0.00 0.00 4.70
2875 3380 4.782691 TCACATCCAGGTCCTCTTCAAATA 59.217 41.667 0.00 0.00 0.00 1.40
2948 3453 5.491982 AGTGTGATGAATGGAAACCTAGTC 58.508 41.667 0.00 0.00 0.00 2.59
2998 3505 4.035792 CACAACAACAGTTATGGAACGGAA 59.964 41.667 3.91 0.00 40.76 4.30
3004 3511 4.950475 TCAAACCACAACAACAGTTATGGA 59.050 37.500 12.17 0.00 41.32 3.41
3011 3518 4.630894 TTAGCTCAAACCACAACAACAG 57.369 40.909 0.00 0.00 0.00 3.16
3013 3520 5.696260 GTTTTAGCTCAAACCACAACAAC 57.304 39.130 11.71 0.00 31.43 3.32
3026 3533 9.301153 CCATAATTATTGTTGTGGTTTTAGCTC 57.699 33.333 0.00 0.00 36.10 4.09
3073 3580 9.594478 GAAAGGACCAAACAAAATTTAGAGAAA 57.406 29.630 0.00 0.00 0.00 2.52
3216 3723 3.730215 ATGGTACCAGCAATGTAACCA 57.270 42.857 21.41 0.00 0.00 3.67
3273 3781 8.421784 GGAACAATTAGATACACATCCTACAGA 58.578 37.037 0.00 0.00 0.00 3.41
3293 3801 5.551233 CTTCATAGACCTCAACAGGAACAA 58.449 41.667 0.00 0.00 43.65 2.83
3298 3806 3.265791 GTGCTTCATAGACCTCAACAGG 58.734 50.000 0.00 0.00 46.87 4.00
3322 3830 7.530426 AAGCCTGACAGACTGAAATTAAATT 57.470 32.000 10.08 0.00 0.00 1.82
3327 3835 4.210331 ACAAAGCCTGACAGACTGAAATT 58.790 39.130 10.08 0.00 0.00 1.82
3466 3982 6.539826 CAGAATTTACAGAGGCATGTATCACA 59.460 38.462 3.79 0.00 35.65 3.58
3472 3988 5.316167 TGAACAGAATTTACAGAGGCATGT 58.684 37.500 0.00 0.95 37.19 3.21
3473 3989 5.885230 TGAACAGAATTTACAGAGGCATG 57.115 39.130 0.00 0.00 0.00 4.06
3775 4292 5.911752 AGGACTATGCTGAGATGTAAACAG 58.088 41.667 0.00 0.00 35.14 3.16
3782 4299 3.900601 ACCCTAAGGACTATGCTGAGATG 59.099 47.826 0.00 0.00 36.73 2.90
3795 4312 7.689313 GCAGTTAATGATGATACACCCTAAGGA 60.689 40.741 0.00 0.00 36.73 3.36
3819 4336 2.552155 GGGTATCAGAACACCAAGTGCA 60.552 50.000 6.84 0.00 36.98 4.57
3868 4388 4.517952 TGATGTGCGGTGATCAAAATTT 57.482 36.364 0.00 0.00 0.00 1.82
3873 4393 2.435422 ACATTGATGTGCGGTGATCAA 58.565 42.857 0.00 0.00 41.58 2.57
3883 4407 8.729756 TCAGAAAGTTACCATAACATTGATGTG 58.270 33.333 0.00 0.00 41.61 3.21
3884 4408 8.862325 TCAGAAAGTTACCATAACATTGATGT 57.138 30.769 1.84 0.00 44.20 3.06
3893 4417 6.828273 CCATCCACATCAGAAAGTTACCATAA 59.172 38.462 0.00 0.00 0.00 1.90
3994 5105 4.079970 TCCTTGACGATGTAGTTCTCTGT 58.920 43.478 0.00 0.00 0.00 3.41
4030 5141 2.568509 TGGGTTACTACTTGTACTGGCC 59.431 50.000 0.00 0.00 0.00 5.36
4060 5179 6.293027 CGCTTCAGATATGTTATCATGCAACA 60.293 38.462 13.08 13.08 40.01 3.33
4069 5188 4.202253 TGCACCTCGCTTCAGATATGTTAT 60.202 41.667 0.00 0.00 43.06 1.89
4092 5211 6.071391 ACAACAACACAATGGTTTCTTCTCTT 60.071 34.615 0.00 0.00 0.00 2.85
4176 5311 6.829229 ATAATGATGTGTTGCCATCCTATG 57.171 37.500 0.00 0.00 40.43 2.23
4227 5362 9.574516 ACTTTCCATCCGCTATAATTTCTATTT 57.425 29.630 0.00 0.00 0.00 1.40
4228 5363 9.574516 AACTTTCCATCCGCTATAATTTCTATT 57.425 29.630 0.00 0.00 0.00 1.73
4229 5364 9.003658 CAACTTTCCATCCGCTATAATTTCTAT 57.996 33.333 0.00 0.00 0.00 1.98
4230 5365 7.444183 CCAACTTTCCATCCGCTATAATTTCTA 59.556 37.037 0.00 0.00 0.00 2.10
4231 5366 6.263168 CCAACTTTCCATCCGCTATAATTTCT 59.737 38.462 0.00 0.00 0.00 2.52
4232 5367 6.039382 ACCAACTTTCCATCCGCTATAATTTC 59.961 38.462 0.00 0.00 0.00 2.17
4233 5368 5.891551 ACCAACTTTCCATCCGCTATAATTT 59.108 36.000 0.00 0.00 0.00 1.82
4234 5369 5.299279 CACCAACTTTCCATCCGCTATAATT 59.701 40.000 0.00 0.00 0.00 1.40
4235 5370 4.821805 CACCAACTTTCCATCCGCTATAAT 59.178 41.667 0.00 0.00 0.00 1.28
4236 5371 4.080807 TCACCAACTTTCCATCCGCTATAA 60.081 41.667 0.00 0.00 0.00 0.98
4237 5372 3.452990 TCACCAACTTTCCATCCGCTATA 59.547 43.478 0.00 0.00 0.00 1.31
4238 5373 2.238646 TCACCAACTTTCCATCCGCTAT 59.761 45.455 0.00 0.00 0.00 2.97
4239 5374 1.626321 TCACCAACTTTCCATCCGCTA 59.374 47.619 0.00 0.00 0.00 4.26
4240 5375 0.400213 TCACCAACTTTCCATCCGCT 59.600 50.000 0.00 0.00 0.00 5.52
4241 5376 1.133025 CATCACCAACTTTCCATCCGC 59.867 52.381 0.00 0.00 0.00 5.54
4242 5377 2.420022 GTCATCACCAACTTTCCATCCG 59.580 50.000 0.00 0.00 0.00 4.18
4243 5378 3.420893 TGTCATCACCAACTTTCCATCC 58.579 45.455 0.00 0.00 0.00 3.51
4244 5379 3.119708 GCTGTCATCACCAACTTTCCATC 60.120 47.826 0.00 0.00 0.00 3.51
4245 5380 2.821969 GCTGTCATCACCAACTTTCCAT 59.178 45.455 0.00 0.00 0.00 3.41
4246 5381 2.229792 GCTGTCATCACCAACTTTCCA 58.770 47.619 0.00 0.00 0.00 3.53
4247 5382 1.197721 CGCTGTCATCACCAACTTTCC 59.802 52.381 0.00 0.00 0.00 3.13
4248 5383 1.197721 CCGCTGTCATCACCAACTTTC 59.802 52.381 0.00 0.00 0.00 2.62
4249 5384 1.238439 CCGCTGTCATCACCAACTTT 58.762 50.000 0.00 0.00 0.00 2.66
4250 5385 1.237285 GCCGCTGTCATCACCAACTT 61.237 55.000 0.00 0.00 0.00 2.66
4251 5386 1.672356 GCCGCTGTCATCACCAACT 60.672 57.895 0.00 0.00 0.00 3.16
4252 5387 2.870372 GCCGCTGTCATCACCAAC 59.130 61.111 0.00 0.00 0.00 3.77
4253 5388 2.723586 TTCGCCGCTGTCATCACCAA 62.724 55.000 0.00 0.00 0.00 3.67
4254 5389 3.233259 TTCGCCGCTGTCATCACCA 62.233 57.895 0.00 0.00 0.00 4.17
4255 5390 2.434185 TTCGCCGCTGTCATCACC 60.434 61.111 0.00 0.00 0.00 4.02
4256 5391 1.291877 AACTTCGCCGCTGTCATCAC 61.292 55.000 0.00 0.00 0.00 3.06
4257 5392 0.245266 TAACTTCGCCGCTGTCATCA 59.755 50.000 0.00 0.00 0.00 3.07
4258 5393 1.571919 ATAACTTCGCCGCTGTCATC 58.428 50.000 0.00 0.00 0.00 2.92
4259 5394 1.665679 CAATAACTTCGCCGCTGTCAT 59.334 47.619 0.00 0.00 0.00 3.06
4260 5395 1.075542 CAATAACTTCGCCGCTGTCA 58.924 50.000 0.00 0.00 0.00 3.58
4261 5396 1.076332 ACAATAACTTCGCCGCTGTC 58.924 50.000 0.00 0.00 0.00 3.51
4262 5397 0.796312 CACAATAACTTCGCCGCTGT 59.204 50.000 0.00 0.00 0.00 4.40
4263 5398 0.096976 CCACAATAACTTCGCCGCTG 59.903 55.000 0.00 0.00 0.00 5.18
4264 5399 1.024579 CCCACAATAACTTCGCCGCT 61.025 55.000 0.00 0.00 0.00 5.52
4265 5400 1.022451 TCCCACAATAACTTCGCCGC 61.022 55.000 0.00 0.00 0.00 6.53
4266 5401 1.006832 CTCCCACAATAACTTCGCCG 58.993 55.000 0.00 0.00 0.00 6.46
4267 5402 1.065709 TCCTCCCACAATAACTTCGCC 60.066 52.381 0.00 0.00 0.00 5.54
4268 5403 2.280628 CTCCTCCCACAATAACTTCGC 58.719 52.381 0.00 0.00 0.00 4.70
4269 5404 2.420129 CCCTCCTCCCACAATAACTTCG 60.420 54.545 0.00 0.00 0.00 3.79
4270 5405 2.576648 ACCCTCCTCCCACAATAACTTC 59.423 50.000 0.00 0.00 0.00 3.01
4271 5406 2.644151 ACCCTCCTCCCACAATAACTT 58.356 47.619 0.00 0.00 0.00 2.66
4272 5407 2.361085 ACCCTCCTCCCACAATAACT 57.639 50.000 0.00 0.00 0.00 2.24
4273 5408 3.353557 GAAACCCTCCTCCCACAATAAC 58.646 50.000 0.00 0.00 0.00 1.89
4274 5409 2.310647 GGAAACCCTCCTCCCACAATAA 59.689 50.000 0.00 0.00 41.61 1.40
4275 5410 1.920351 GGAAACCCTCCTCCCACAATA 59.080 52.381 0.00 0.00 41.61 1.90
4276 5411 0.704664 GGAAACCCTCCTCCCACAAT 59.295 55.000 0.00 0.00 41.61 2.71
4277 5412 2.160646 GGAAACCCTCCTCCCACAA 58.839 57.895 0.00 0.00 41.61 3.33
4278 5413 3.916184 GGAAACCCTCCTCCCACA 58.084 61.111 0.00 0.00 41.61 4.17
4315 5451 4.821589 CTGCCCTCCGGAAGCGAC 62.822 72.222 18.48 2.73 0.00 5.19
4367 5514 2.494073 ACAGGGTCGCAAAACAGAAAAA 59.506 40.909 0.00 0.00 0.00 1.94
4369 5516 1.757682 ACAGGGTCGCAAAACAGAAA 58.242 45.000 0.00 0.00 0.00 2.52
4378 5525 2.281484 GCCAGAAACAGGGTCGCA 60.281 61.111 0.00 0.00 0.00 5.10
4404 5552 6.646267 ACGGAGCTGTAGGAATATAACAAAA 58.354 36.000 0.00 0.00 0.00 2.44
4408 5556 6.979465 ACTTACGGAGCTGTAGGAATATAAC 58.021 40.000 0.00 0.00 0.00 1.89
4420 5568 1.560923 CAATCGGACTTACGGAGCTG 58.439 55.000 0.00 0.00 0.00 4.24
4441 5589 8.321353 GGATAAAAATCCCCTCAAAATTTCAGT 58.679 33.333 0.00 0.00 34.66 3.41
4487 5635 1.716028 GGTTGGGGGTGTCCTTCTGT 61.716 60.000 0.00 0.00 35.33 3.41
4524 5672 2.625823 GGCGCACCAAGCAAGCTTA 61.626 57.895 10.83 0.00 46.13 3.09
4571 5726 2.991250 ACGCAAGATAATGCTCAAGGT 58.009 42.857 0.00 0.00 44.21 3.50
4681 5840 9.212687 CTCTTTGTTGCATATTTGTTTGTTTTG 57.787 29.630 0.00 0.00 0.00 2.44
4684 5845 7.271511 TCCTCTTTGTTGCATATTTGTTTGTT 58.728 30.769 0.00 0.00 0.00 2.83
4685 5846 6.815089 TCCTCTTTGTTGCATATTTGTTTGT 58.185 32.000 0.00 0.00 0.00 2.83
4690 5851 5.796935 CGAGTTCCTCTTTGTTGCATATTTG 59.203 40.000 0.00 0.00 0.00 2.32
4705 5867 1.377202 TGCCCAATGCGAGTTCCTC 60.377 57.895 0.00 0.00 45.60 3.71
4713 5875 1.667236 TTGATCTAGTGCCCAATGCG 58.333 50.000 0.00 0.00 45.60 4.73
4742 5904 9.087871 TGGGAACAAATTAGATGATTTTCTTGA 57.912 29.630 0.00 0.00 37.44 3.02
4765 5927 7.504924 TCTACAACTTTCACATACTTTTGGG 57.495 36.000 0.00 0.00 0.00 4.12
4814 5977 6.592994 TGATTCGTCTCCGTCGTATCTATAAT 59.407 38.462 0.00 0.00 36.55 1.28
4835 5998 2.202878 CCGACGGTGGCGATGATT 60.203 61.111 5.48 0.00 0.00 2.57
4855 6018 2.752091 CTGTAGCAGCAGCAGTCTG 58.248 57.895 3.17 0.00 45.49 3.51
4865 6028 2.510238 GACCAGCCGCTGTAGCAG 60.510 66.667 18.98 5.88 42.21 4.24
4866 6029 4.435436 CGACCAGCCGCTGTAGCA 62.435 66.667 18.98 0.00 42.21 3.49
4867 6030 4.436998 ACGACCAGCCGCTGTAGC 62.437 66.667 18.98 6.92 37.78 3.58
4868 6031 2.202623 GACGACCAGCCGCTGTAG 60.203 66.667 18.98 11.64 0.00 2.74
4869 6032 3.755628 GGACGACCAGCCGCTGTA 61.756 66.667 18.98 0.00 35.97 2.74
4871 6034 4.803426 GAGGACGACCAGCCGCTG 62.803 72.222 13.82 13.82 38.94 5.18
4874 6037 4.477975 GACGAGGACGACCAGCCG 62.478 72.222 6.71 9.01 42.66 5.52
4875 6038 4.477975 CGACGAGGACGACCAGCC 62.478 72.222 6.71 0.00 42.66 4.85
4876 6039 3.264866 AACGACGAGGACGACCAGC 62.265 63.158 6.71 0.00 42.66 4.85
4877 6040 1.442184 CAACGACGAGGACGACCAG 60.442 63.158 6.71 2.23 42.66 4.00
4878 6041 2.640989 CAACGACGAGGACGACCA 59.359 61.111 6.71 0.00 42.66 4.02
4879 6042 2.126580 CCAACGACGAGGACGACC 60.127 66.667 0.00 0.00 42.66 4.79
4880 6043 1.154263 CTCCAACGACGAGGACGAC 60.154 63.158 0.00 0.00 42.66 4.34
4881 6044 3.260931 CTCCAACGACGAGGACGA 58.739 61.111 0.00 0.00 42.66 4.20
4886 6049 1.095600 TCATCTCCTCCAACGACGAG 58.904 55.000 0.00 0.00 0.00 4.18
4887 6050 0.809385 GTCATCTCCTCCAACGACGA 59.191 55.000 0.00 0.00 0.00 4.20
4888 6051 0.523546 CGTCATCTCCTCCAACGACG 60.524 60.000 0.00 0.00 40.04 5.12
4889 6052 0.809385 TCGTCATCTCCTCCAACGAC 59.191 55.000 0.00 0.00 37.43 4.34
4890 6053 1.676529 GATCGTCATCTCCTCCAACGA 59.323 52.381 0.00 0.00 45.20 3.85
4891 6054 1.678627 AGATCGTCATCTCCTCCAACG 59.321 52.381 0.00 0.00 33.71 4.10
4892 6055 3.363341 GAGATCGTCATCTCCTCCAAC 57.637 52.381 3.29 0.00 46.83 3.77
4899 6062 3.648029 AGAAGGCGGAGATCGTCATCTC 61.648 54.545 5.72 5.72 46.63 2.75
4900 6063 1.752436 AGAAGGCGGAGATCGTCATCT 60.752 52.381 0.00 0.00 45.07 2.90
4904 6067 0.592754 CGAAGAAGGCGGAGATCGTC 60.593 60.000 0.00 0.00 45.07 4.20
4905 6068 1.030488 TCGAAGAAGGCGGAGATCGT 61.030 55.000 0.00 0.00 41.72 3.73
4906 6069 0.317436 CTCGAAGAAGGCGGAGATCG 60.317 60.000 0.00 0.00 37.93 3.69
4907 6070 0.031449 CCTCGAAGAAGGCGGAGATC 59.969 60.000 0.00 0.00 34.09 2.75
4908 6071 0.395862 TCCTCGAAGAAGGCGGAGAT 60.396 55.000 0.00 0.00 34.09 2.75
4909 6072 1.001269 TCCTCGAAGAAGGCGGAGA 60.001 57.895 0.00 0.00 34.09 3.71
4910 6073 1.435515 CTCCTCGAAGAAGGCGGAG 59.564 63.158 0.75 0.75 34.09 4.63
4911 6074 2.711922 GCTCCTCGAAGAAGGCGGA 61.712 63.158 0.00 0.00 34.09 5.54
4912 6075 2.202810 GCTCCTCGAAGAAGGCGG 60.203 66.667 0.00 0.00 34.09 6.13
4913 6076 2.202810 GGCTCCTCGAAGAAGGCG 60.203 66.667 0.00 0.00 34.09 5.52
4914 6077 2.202810 CGGCTCCTCGAAGAAGGC 60.203 66.667 5.22 5.22 34.09 4.35
4915 6078 2.202810 GCGGCTCCTCGAAGAAGG 60.203 66.667 0.00 0.00 34.09 3.46
4916 6079 2.202810 GGCGGCTCCTCGAAGAAG 60.203 66.667 0.00 0.00 34.09 2.85
4917 6080 3.771160 GGGCGGCTCCTCGAAGAA 61.771 66.667 9.56 0.00 34.09 2.52
4932 6095 4.570663 GTCGTCCTCATCGCCGGG 62.571 72.222 2.18 0.00 0.00 5.73
4933 6096 4.907034 CGTCGTCCTCATCGCCGG 62.907 72.222 0.00 0.00 0.00 6.13
4934 6097 4.907034 CCGTCGTCCTCATCGCCG 62.907 72.222 0.00 0.00 0.00 6.46
4937 6100 4.570663 GGGCCGTCGTCCTCATCG 62.571 72.222 0.00 0.00 0.00 3.84
4938 6101 4.222847 GGGGCCGTCGTCCTCATC 62.223 72.222 0.00 0.00 0.00 2.92
4970 6133 2.890474 ATCGGATTGTGGCGACGC 60.890 61.111 12.43 12.43 42.66 5.19
4971 6134 2.525248 CCATCGGATTGTGGCGACG 61.525 63.158 0.00 0.00 0.00 5.12
4972 6135 1.153449 TCCATCGGATTGTGGCGAC 60.153 57.895 0.00 0.00 35.43 5.19
4973 6136 1.143838 CTCCATCGGATTGTGGCGA 59.856 57.895 0.00 0.00 35.43 5.54
4974 6137 2.537560 GCTCCATCGGATTGTGGCG 61.538 63.158 0.00 0.00 35.43 5.69
4975 6138 2.189499 GGCTCCATCGGATTGTGGC 61.189 63.158 2.73 2.73 35.43 5.01
4976 6139 1.526917 GGGCTCCATCGGATTGTGG 60.527 63.158 0.00 0.00 36.82 4.17
4977 6140 0.179009 ATGGGCTCCATCGGATTGTG 60.179 55.000 1.21 0.00 40.74 3.33
4978 6141 2.234586 ATGGGCTCCATCGGATTGT 58.765 52.632 1.21 0.00 40.74 2.71
4994 6157 0.742281 CAGGCGACAGTTCCAGGATG 60.742 60.000 0.00 0.00 0.00 3.51
4995 6158 1.599047 CAGGCGACAGTTCCAGGAT 59.401 57.895 0.00 0.00 0.00 3.24
4996 6159 3.059982 CAGGCGACAGTTCCAGGA 58.940 61.111 0.00 0.00 0.00 3.86
4997 6160 2.743928 GCAGGCGACAGTTCCAGG 60.744 66.667 0.00 0.00 0.00 4.45
4998 6161 2.743928 GGCAGGCGACAGTTCCAG 60.744 66.667 0.00 0.00 0.00 3.86
4999 6162 4.680237 CGGCAGGCGACAGTTCCA 62.680 66.667 11.78 0.00 0.00 3.53
5000 6163 4.681978 ACGGCAGGCGACAGTTCC 62.682 66.667 25.17 0.00 0.00 3.62
5001 6164 3.112709 GACGGCAGGCGACAGTTC 61.113 66.667 25.17 5.71 0.00 3.01
5019 6182 4.660938 AAAGTCGTGGGCCCCTGC 62.661 66.667 22.27 8.82 0.00 4.85
5020 6183 2.359975 GAAAGTCGTGGGCCCCTG 60.360 66.667 22.27 12.28 0.00 4.45
5021 6184 3.647771 GGAAAGTCGTGGGCCCCT 61.648 66.667 22.27 5.74 0.00 4.79
5022 6185 4.735358 GGGAAAGTCGTGGGCCCC 62.735 72.222 22.27 10.05 32.50 5.80
5024 6187 4.324991 ACGGGAAAGTCGTGGGCC 62.325 66.667 0.00 0.00 39.55 5.80
5025 6188 2.741211 GACGGGAAAGTCGTGGGC 60.741 66.667 0.00 0.00 41.22 5.36


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.