Multiple sequence alignment - TraesCS4B01G066000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G066000 chr4B 100.000 3440 0 0 1 3440 58924787 58928226 0.000000e+00 6353.0
1 TraesCS4B01G066000 chr4B 100.000 314 0 0 3715 4028 58928501 58928814 7.500000e-162 580.0
2 TraesCS4B01G066000 chr4B 89.776 313 31 1 2353 2665 58979414 58979103 2.260000e-107 399.0
3 TraesCS4B01G066000 chr4B 88.715 319 35 1 2347 2665 58943614 58943931 4.880000e-104 388.0
4 TraesCS4B01G066000 chr4B 82.918 281 43 5 2788 3064 58943999 58944278 8.640000e-62 248.0
5 TraesCS4B01G066000 chr4B 84.472 161 23 2 1716 1875 58977959 58977800 1.500000e-34 158.0
6 TraesCS4B01G066000 chr4A 94.798 1903 82 7 759 2660 559496524 559494638 0.000000e+00 2950.0
7 TraesCS4B01G066000 chr4A 90.221 542 34 4 2785 3309 559494456 559493917 0.000000e+00 689.0
8 TraesCS4B01G066000 chr4A 92.114 317 24 1 154 470 559508317 559508002 2.860000e-121 446.0
9 TraesCS4B01G066000 chr4A 84.131 397 56 2 1586 1982 559489133 559488744 1.060000e-100 377.0
10 TraesCS4B01G066000 chr4A 91.473 258 20 2 3723 3979 559493925 559493669 1.780000e-93 353.0
11 TraesCS4B01G066000 chr4A 94.475 181 10 0 578 758 707487074 707487254 3.070000e-71 279.0
12 TraesCS4B01G066000 chr4A 95.031 161 8 0 1 161 559508636 559508476 1.860000e-63 254.0
13 TraesCS4B01G066000 chr4D 94.955 1883 76 9 772 2651 40396129 40397995 0.000000e+00 2933.0
14 TraesCS4B01G066000 chr4D 96.014 577 18 3 1 572 40395510 40396086 0.000000e+00 933.0
15 TraesCS4B01G066000 chr4D 90.789 304 27 1 2353 2655 40457276 40456973 4.850000e-109 405.0
16 TraesCS4B01G066000 chr4D 84.742 426 36 14 2784 3186 40398077 40398496 2.260000e-107 399.0
17 TraesCS4B01G066000 chr4D 78.268 589 104 18 2476 3056 40409517 40408945 1.380000e-94 357.0
18 TraesCS4B01G066000 chr4D 88.055 293 35 0 1690 1982 40399886 40400178 8.290000e-92 348.0
19 TraesCS4B01G066000 chr4D 80.769 156 24 2 3878 4027 40398611 40398766 2.540000e-22 117.0
20 TraesCS4B01G066000 chr5A 90.789 380 28 4 1 380 621536155 621535783 6.010000e-138 501.0
21 TraesCS4B01G066000 chr3D 84.143 391 60 2 1309 1698 5649407 5649796 1.060000e-100 377.0
22 TraesCS4B01G066000 chr3D 93.284 134 6 3 3308 3440 299998704 299998835 1.140000e-45 195.0
23 TraesCS4B01G066000 chr3D 88.542 96 10 1 665 759 428552402 428552497 9.150000e-22 115.0
24 TraesCS4B01G066000 chr3D 96.364 55 2 0 1150 1204 5649122 5649176 1.540000e-14 91.6
25 TraesCS4B01G066000 chrUn 82.741 394 60 7 1309 1698 260890816 260890427 1.070000e-90 344.0
26 TraesCS4B01G066000 chrUn 82.741 394 60 7 1309 1698 263767949 263768338 1.070000e-90 344.0
27 TraesCS4B01G066000 chrUn 85.811 148 21 0 1309 1456 35833954 35833807 1.500000e-34 158.0
28 TraesCS4B01G066000 chrUn 88.136 59 7 0 3230 3288 283468697 283468755 2.010000e-08 71.3
29 TraesCS4B01G066000 chrUn 88.136 59 7 0 3230 3288 375865156 375865214 2.010000e-08 71.3
30 TraesCS4B01G066000 chr3A 82.443 393 63 5 1309 1698 15619968 15619579 4.990000e-89 339.0
31 TraesCS4B01G066000 chr3B 81.888 392 67 4 1309 1698 12304962 12304573 1.080000e-85 327.0
32 TraesCS4B01G066000 chr3B 96.341 164 4 2 595 758 673836544 673836705 6.640000e-68 268.0
33 TraesCS4B01G066000 chr3B 94.231 52 3 0 1150 1201 27872463 27872514 3.340000e-11 80.5
34 TraesCS4B01G066000 chr3B 88.136 59 7 0 3230 3288 822259241 822259299 2.010000e-08 71.3
35 TraesCS4B01G066000 chr3B 88.136 59 7 0 3230 3288 822360862 822360920 2.010000e-08 71.3
36 TraesCS4B01G066000 chr3B 88.136 59 7 0 3230 3288 825189016 825188958 2.010000e-08 71.3
37 TraesCS4B01G066000 chr2D 76.534 554 100 25 1309 1844 375593923 375594464 3.970000e-70 276.0
38 TraesCS4B01G066000 chr2B 94.268 157 8 1 348 504 213236897 213237052 5.200000e-59 239.0
39 TraesCS4B01G066000 chr5B 88.587 184 18 3 576 758 383153971 383153790 1.880000e-53 220.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G066000 chr4B 58924787 58928814 4027 False 3466.500000 6353 100.0000 1 4028 2 chr4B.!!$F1 4027
1 TraesCS4B01G066000 chr4B 58943614 58944278 664 False 318.000000 388 85.8165 2347 3064 2 chr4B.!!$F2 717
2 TraesCS4B01G066000 chr4B 58977800 58979414 1614 True 278.500000 399 87.1240 1716 2665 2 chr4B.!!$R1 949
3 TraesCS4B01G066000 chr4A 559493669 559496524 2855 True 1330.666667 2950 92.1640 759 3979 3 chr4A.!!$R2 3220
4 TraesCS4B01G066000 chr4A 559508002 559508636 634 True 350.000000 446 93.5725 1 470 2 chr4A.!!$R3 469
5 TraesCS4B01G066000 chr4D 40395510 40400178 4668 False 946.000000 2933 88.9070 1 4027 5 chr4D.!!$F1 4026
6 TraesCS4B01G066000 chr4D 40408945 40409517 572 True 357.000000 357 78.2680 2476 3056 1 chr4D.!!$R1 580
7 TraesCS4B01G066000 chr3D 5649122 5649796 674 False 234.300000 377 90.2535 1150 1698 2 chr3D.!!$F3 548
8 TraesCS4B01G066000 chr2D 375593923 375594464 541 False 276.000000 276 76.5340 1309 1844 1 chr2D.!!$F1 535

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
687 859 0.033601 CCCATCCCCGGTGAAAATCA 60.034 55.000 0.00 0.00 0.00 2.57 F
708 880 0.252239 GGGGGCCAAGAGGATTTGTT 60.252 55.000 4.39 0.00 36.89 2.83 F
1045 1250 1.081840 GTTTTCCTGCTGCTCGTGC 60.082 57.895 1.71 1.71 40.20 5.34 F
2684 3174 1.000506 GACCGTCTTAACAGTGGCAGA 59.999 52.381 0.00 0.00 0.00 4.26 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1904 2287 0.443869 TGTAGTACTCGAACCGCGTC 59.556 55.0 4.92 0.00 41.80 5.19 R
2519 2902 0.798159 GATCGTTGCACATGAGCACA 59.202 50.0 17.82 6.61 45.61 4.57 R
2735 3225 0.975556 TATGCAGTGCCGGAGAGGAA 60.976 55.0 13.72 0.00 45.00 3.36 R
3720 4503 0.187117 TTGGGAGGCAAATGTGACCA 59.813 50.0 0.00 0.00 30.22 4.02 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
76 77 2.100584 GTGGAGCTGTCATTCGAGATCT 59.899 50.000 0.00 0.00 0.00 2.75
104 105 1.133253 CTTCGTTGCTGCATCCACG 59.867 57.895 16.76 16.76 0.00 4.94
207 374 6.997476 GCTTGGGATAAATTCTCTTCTGATCT 59.003 38.462 0.00 0.00 0.00 2.75
380 547 7.544804 TGCTCATTATATTAGCTCAGAAGGA 57.455 36.000 0.00 0.00 37.16 3.36
423 590 1.604378 GATGGACACACCCCCTGAG 59.396 63.158 0.00 0.00 38.00 3.35
484 651 6.135290 TGTGATTAATAAAGCAGCCATGAC 57.865 37.500 0.00 0.00 30.14 3.06
585 757 1.106285 GGGATGACCTTGGACAATGC 58.894 55.000 0.00 0.00 35.85 3.56
586 758 1.341383 GGGATGACCTTGGACAATGCT 60.341 52.381 0.00 0.00 35.85 3.79
587 759 2.092429 GGGATGACCTTGGACAATGCTA 60.092 50.000 0.00 0.00 35.85 3.49
588 760 2.945668 GGATGACCTTGGACAATGCTAC 59.054 50.000 0.00 0.00 0.00 3.58
589 761 3.609853 GATGACCTTGGACAATGCTACA 58.390 45.455 0.00 0.00 0.00 2.74
590 762 2.778299 TGACCTTGGACAATGCTACAC 58.222 47.619 0.00 0.00 0.00 2.90
591 763 2.084546 GACCTTGGACAATGCTACACC 58.915 52.381 0.00 0.00 0.00 4.16
592 764 1.705186 ACCTTGGACAATGCTACACCT 59.295 47.619 0.00 0.00 0.00 4.00
593 765 2.910319 ACCTTGGACAATGCTACACCTA 59.090 45.455 0.00 0.00 0.00 3.08
594 766 3.270877 CCTTGGACAATGCTACACCTAC 58.729 50.000 0.00 0.00 0.00 3.18
595 767 2.665649 TGGACAATGCTACACCTACG 57.334 50.000 0.00 0.00 0.00 3.51
596 768 2.172679 TGGACAATGCTACACCTACGA 58.827 47.619 0.00 0.00 0.00 3.43
597 769 2.563620 TGGACAATGCTACACCTACGAA 59.436 45.455 0.00 0.00 0.00 3.85
598 770 3.007074 TGGACAATGCTACACCTACGAAA 59.993 43.478 0.00 0.00 0.00 3.46
599 771 3.998341 GGACAATGCTACACCTACGAAAA 59.002 43.478 0.00 0.00 0.00 2.29
600 772 4.092968 GGACAATGCTACACCTACGAAAAG 59.907 45.833 0.00 0.00 0.00 2.27
601 773 4.638304 ACAATGCTACACCTACGAAAAGT 58.362 39.130 0.00 0.00 0.00 2.66
602 774 5.786311 ACAATGCTACACCTACGAAAAGTA 58.214 37.500 0.00 0.00 0.00 2.24
603 775 6.225318 ACAATGCTACACCTACGAAAAGTAA 58.775 36.000 0.00 0.00 34.45 2.24
604 776 6.877322 ACAATGCTACACCTACGAAAAGTAAT 59.123 34.615 0.00 0.00 34.45 1.89
605 777 8.036575 ACAATGCTACACCTACGAAAAGTAATA 58.963 33.333 0.00 0.00 34.45 0.98
606 778 9.042008 CAATGCTACACCTACGAAAAGTAATAT 57.958 33.333 0.00 0.00 34.45 1.28
608 780 9.909644 ATGCTACACCTACGAAAAGTAATATAG 57.090 33.333 0.00 0.00 34.45 1.31
609 781 8.355169 TGCTACACCTACGAAAAGTAATATAGG 58.645 37.037 0.00 0.00 34.45 2.57
610 782 8.571336 GCTACACCTACGAAAAGTAATATAGGA 58.429 37.037 2.20 0.00 34.45 2.94
612 784 8.530804 ACACCTACGAAAAGTAATATAGGAGT 57.469 34.615 2.20 0.00 34.45 3.85
613 785 8.975295 ACACCTACGAAAAGTAATATAGGAGTT 58.025 33.333 2.20 0.00 34.45 3.01
614 786 9.813446 CACCTACGAAAAGTAATATAGGAGTTT 57.187 33.333 2.20 0.00 34.45 2.66
619 791 9.860898 ACGAAAAGTAATATAGGAGTTTTACGT 57.139 29.630 0.00 0.00 32.86 3.57
628 800 9.880157 AATATAGGAGTTTTACGTAAAAGCTGA 57.120 29.630 28.88 16.03 38.59 4.26
630 802 6.481954 AGGAGTTTTACGTAAAAGCTGATG 57.518 37.500 28.88 0.00 38.59 3.07
631 803 5.995897 AGGAGTTTTACGTAAAAGCTGATGT 59.004 36.000 28.88 11.03 38.59 3.06
632 804 6.073222 AGGAGTTTTACGTAAAAGCTGATGTG 60.073 38.462 28.88 0.00 38.59 3.21
633 805 5.997385 AGTTTTACGTAAAAGCTGATGTGG 58.003 37.500 28.88 0.00 37.26 4.17
634 806 5.761234 AGTTTTACGTAAAAGCTGATGTGGA 59.239 36.000 28.88 5.30 37.26 4.02
635 807 5.856126 TTTACGTAAAAGCTGATGTGGAG 57.144 39.130 18.10 0.00 0.00 3.86
636 808 3.678056 ACGTAAAAGCTGATGTGGAGA 57.322 42.857 0.00 0.00 0.00 3.71
637 809 4.002906 ACGTAAAAGCTGATGTGGAGAA 57.997 40.909 0.00 0.00 0.00 2.87
638 810 3.997021 ACGTAAAAGCTGATGTGGAGAAG 59.003 43.478 0.00 0.00 0.00 2.85
639 811 4.245660 CGTAAAAGCTGATGTGGAGAAGA 58.754 43.478 0.00 0.00 0.00 2.87
640 812 4.092091 CGTAAAAGCTGATGTGGAGAAGAC 59.908 45.833 0.00 0.00 0.00 3.01
641 813 4.363991 AAAAGCTGATGTGGAGAAGACT 57.636 40.909 0.00 0.00 0.00 3.24
642 814 5.489792 AAAAGCTGATGTGGAGAAGACTA 57.510 39.130 0.00 0.00 0.00 2.59
643 815 5.489792 AAAGCTGATGTGGAGAAGACTAA 57.510 39.130 0.00 0.00 0.00 2.24
644 816 5.690464 AAGCTGATGTGGAGAAGACTAAT 57.310 39.130 0.00 0.00 0.00 1.73
645 817 5.690464 AGCTGATGTGGAGAAGACTAATT 57.310 39.130 0.00 0.00 0.00 1.40
646 818 5.426504 AGCTGATGTGGAGAAGACTAATTG 58.573 41.667 0.00 0.00 0.00 2.32
647 819 4.574013 GCTGATGTGGAGAAGACTAATTGG 59.426 45.833 0.00 0.00 0.00 3.16
648 820 5.102953 TGATGTGGAGAAGACTAATTGGG 57.897 43.478 0.00 0.00 0.00 4.12
649 821 3.350219 TGTGGAGAAGACTAATTGGGC 57.650 47.619 0.00 0.00 0.00 5.36
650 822 2.026262 TGTGGAGAAGACTAATTGGGCC 60.026 50.000 0.00 0.00 0.00 5.80
651 823 2.026262 GTGGAGAAGACTAATTGGGCCA 60.026 50.000 0.00 0.00 0.00 5.36
652 824 2.647299 TGGAGAAGACTAATTGGGCCAA 59.353 45.455 23.33 23.33 0.00 4.52
653 825 3.075283 TGGAGAAGACTAATTGGGCCAAA 59.925 43.478 24.97 6.78 0.00 3.28
654 826 4.086457 GGAGAAGACTAATTGGGCCAAAA 58.914 43.478 24.97 13.61 0.00 2.44
655 827 4.711846 GGAGAAGACTAATTGGGCCAAAAT 59.288 41.667 24.97 17.46 0.00 1.82
656 828 5.187772 GGAGAAGACTAATTGGGCCAAAATT 59.812 40.000 24.97 16.46 0.00 1.82
657 829 6.379988 GGAGAAGACTAATTGGGCCAAAATTA 59.620 38.462 24.97 16.72 0.00 1.40
658 830 7.410120 AGAAGACTAATTGGGCCAAAATTAG 57.590 36.000 30.34 30.34 46.27 1.73
659 831 5.598416 AGACTAATTGGGCCAAAATTAGC 57.402 39.130 31.16 25.90 45.40 3.09
660 832 5.022787 AGACTAATTGGGCCAAAATTAGCA 58.977 37.500 31.16 13.42 45.40 3.49
661 833 5.127682 AGACTAATTGGGCCAAAATTAGCAG 59.872 40.000 31.16 20.64 45.40 4.24
662 834 2.696989 ATTGGGCCAAAATTAGCAGC 57.303 45.000 24.97 0.00 0.00 5.25
663 835 1.643310 TTGGGCCAAAATTAGCAGCT 58.357 45.000 18.51 0.00 0.00 4.24
664 836 0.896923 TGGGCCAAAATTAGCAGCTG 59.103 50.000 10.11 10.11 0.00 4.24
665 837 0.176449 GGGCCAAAATTAGCAGCTGG 59.824 55.000 17.12 0.00 0.00 4.85
666 838 0.176449 GGCCAAAATTAGCAGCTGGG 59.824 55.000 17.12 6.43 0.00 4.45
667 839 0.176449 GCCAAAATTAGCAGCTGGGG 59.824 55.000 17.12 0.00 0.00 4.96
668 840 0.176449 CCAAAATTAGCAGCTGGGGC 59.824 55.000 17.12 0.07 39.06 5.80
669 841 0.176449 CAAAATTAGCAGCTGGGGCC 59.824 55.000 17.12 0.00 39.73 5.80
670 842 0.977627 AAAATTAGCAGCTGGGGCCC 60.978 55.000 18.17 18.17 39.73 5.80
671 843 2.166957 AAATTAGCAGCTGGGGCCCA 62.167 55.000 26.87 26.87 39.73 5.36
672 844 1.953100 AATTAGCAGCTGGGGCCCAT 61.953 55.000 28.95 14.00 39.73 4.00
673 845 2.363292 ATTAGCAGCTGGGGCCCATC 62.363 60.000 28.95 23.60 39.73 3.51
683 855 4.055227 GGCCCATCCCCGGTGAAA 62.055 66.667 0.00 0.00 0.00 2.69
684 856 2.036572 GCCCATCCCCGGTGAAAA 59.963 61.111 0.00 0.00 0.00 2.29
685 857 1.381191 GCCCATCCCCGGTGAAAAT 60.381 57.895 0.00 0.00 0.00 1.82
686 858 1.391933 GCCCATCCCCGGTGAAAATC 61.392 60.000 0.00 0.00 0.00 2.17
687 859 0.033601 CCCATCCCCGGTGAAAATCA 60.034 55.000 0.00 0.00 0.00 2.57
688 860 1.392589 CCATCCCCGGTGAAAATCAG 58.607 55.000 0.00 0.00 0.00 2.90
689 861 1.392589 CATCCCCGGTGAAAATCAGG 58.607 55.000 0.00 0.00 0.00 3.86
690 862 0.258774 ATCCCCGGTGAAAATCAGGG 59.741 55.000 0.00 0.00 39.44 4.45
691 863 4.337013 CCCGGTGAAAATCAGGGG 57.663 61.111 0.00 2.93 35.70 4.79
692 864 1.379843 CCCGGTGAAAATCAGGGGG 60.380 63.158 0.00 5.28 37.56 5.40
706 878 4.362479 GGGGGCCAAGAGGATTTG 57.638 61.111 4.39 0.00 36.89 2.32
707 879 1.388133 GGGGGCCAAGAGGATTTGT 59.612 57.895 4.39 0.00 36.89 2.83
708 880 0.252239 GGGGGCCAAGAGGATTTGTT 60.252 55.000 4.39 0.00 36.89 2.83
709 881 1.644509 GGGGCCAAGAGGATTTGTTT 58.355 50.000 4.39 0.00 36.89 2.83
710 882 1.276138 GGGGCCAAGAGGATTTGTTTG 59.724 52.381 4.39 0.00 36.89 2.93
711 883 2.247358 GGGCCAAGAGGATTTGTTTGA 58.753 47.619 4.39 0.00 36.89 2.69
712 884 2.632512 GGGCCAAGAGGATTTGTTTGAA 59.367 45.455 4.39 0.00 36.89 2.69
713 885 3.070878 GGGCCAAGAGGATTTGTTTGAAA 59.929 43.478 4.39 0.00 36.89 2.69
714 886 4.309933 GGCCAAGAGGATTTGTTTGAAAG 58.690 43.478 0.00 0.00 36.89 2.62
715 887 4.309933 GCCAAGAGGATTTGTTTGAAAGG 58.690 43.478 0.00 0.00 36.89 3.11
716 888 4.309933 CCAAGAGGATTTGTTTGAAAGGC 58.690 43.478 0.00 0.00 36.89 4.35
717 889 4.039609 CCAAGAGGATTTGTTTGAAAGGCT 59.960 41.667 0.00 0.00 36.89 4.58
718 890 5.453762 CCAAGAGGATTTGTTTGAAAGGCTT 60.454 40.000 0.00 0.00 36.89 4.35
719 891 5.459536 AGAGGATTTGTTTGAAAGGCTTC 57.540 39.130 0.00 0.00 0.00 3.86
720 892 4.022849 AGAGGATTTGTTTGAAAGGCTTCG 60.023 41.667 0.00 0.00 33.94 3.79
721 893 3.636764 AGGATTTGTTTGAAAGGCTTCGT 59.363 39.130 0.00 0.00 33.94 3.85
722 894 4.825085 AGGATTTGTTTGAAAGGCTTCGTA 59.175 37.500 0.00 0.00 33.94 3.43
723 895 5.048713 AGGATTTGTTTGAAAGGCTTCGTAG 60.049 40.000 0.00 0.00 33.94 3.51
724 896 4.561735 TTTGTTTGAAAGGCTTCGTAGG 57.438 40.909 0.00 0.00 33.94 3.18
725 897 3.202829 TGTTTGAAAGGCTTCGTAGGT 57.797 42.857 0.00 0.00 33.94 3.08
726 898 3.135994 TGTTTGAAAGGCTTCGTAGGTC 58.864 45.455 0.00 0.00 33.94 3.85
727 899 3.181458 TGTTTGAAAGGCTTCGTAGGTCT 60.181 43.478 0.00 0.00 33.94 3.85
728 900 3.764237 TTGAAAGGCTTCGTAGGTCTT 57.236 42.857 0.00 0.00 33.94 3.01
729 901 3.314541 TGAAAGGCTTCGTAGGTCTTC 57.685 47.619 0.00 0.00 33.94 2.87
730 902 2.260481 GAAAGGCTTCGTAGGTCTTCG 58.740 52.381 0.00 0.00 0.00 3.79
731 903 1.254954 AAGGCTTCGTAGGTCTTCGT 58.745 50.000 0.00 0.00 0.00 3.85
732 904 2.119801 AGGCTTCGTAGGTCTTCGTA 57.880 50.000 0.00 0.00 0.00 3.43
733 905 2.015587 AGGCTTCGTAGGTCTTCGTAG 58.984 52.381 0.00 0.81 0.00 3.51
734 906 1.742268 GGCTTCGTAGGTCTTCGTAGT 59.258 52.381 5.80 0.00 0.00 2.73
735 907 2.223226 GGCTTCGTAGGTCTTCGTAGTC 60.223 54.545 5.80 0.62 0.00 2.59
736 908 2.223226 GCTTCGTAGGTCTTCGTAGTCC 60.223 54.545 0.00 0.00 0.00 3.85
737 909 3.269178 CTTCGTAGGTCTTCGTAGTCCT 58.731 50.000 12.07 12.07 41.83 3.85
738 910 3.340814 TCGTAGGTCTTCGTAGTCCTT 57.659 47.619 12.58 0.00 40.00 3.36
739 911 3.005554 TCGTAGGTCTTCGTAGTCCTTG 58.994 50.000 12.58 6.96 40.00 3.61
740 912 2.097142 CGTAGGTCTTCGTAGTCCTTGG 59.903 54.545 12.58 2.86 40.00 3.61
741 913 2.305858 AGGTCTTCGTAGTCCTTGGT 57.694 50.000 2.10 0.00 36.67 3.67
742 914 3.446442 AGGTCTTCGTAGTCCTTGGTA 57.554 47.619 2.10 0.00 36.67 3.25
743 915 3.354467 AGGTCTTCGTAGTCCTTGGTAG 58.646 50.000 2.10 0.00 36.67 3.18
744 916 3.009916 AGGTCTTCGTAGTCCTTGGTAGA 59.990 47.826 2.10 0.00 36.67 2.59
745 917 3.952967 GGTCTTCGTAGTCCTTGGTAGAT 59.047 47.826 0.00 0.00 0.00 1.98
746 918 4.202030 GGTCTTCGTAGTCCTTGGTAGATG 60.202 50.000 0.00 0.00 0.00 2.90
747 919 4.398673 GTCTTCGTAGTCCTTGGTAGATGT 59.601 45.833 0.00 0.00 0.00 3.06
748 920 5.587844 GTCTTCGTAGTCCTTGGTAGATGTA 59.412 44.000 0.00 0.00 0.00 2.29
749 921 5.821470 TCTTCGTAGTCCTTGGTAGATGTAG 59.179 44.000 0.00 0.00 0.00 2.74
750 922 3.881688 TCGTAGTCCTTGGTAGATGTAGC 59.118 47.826 0.00 0.00 0.00 3.58
751 923 3.630769 CGTAGTCCTTGGTAGATGTAGCA 59.369 47.826 0.00 0.00 34.79 3.49
752 924 4.278669 CGTAGTCCTTGGTAGATGTAGCAT 59.721 45.833 2.26 0.00 36.54 3.79
753 925 5.221263 CGTAGTCCTTGGTAGATGTAGCATT 60.221 44.000 2.26 0.00 36.54 3.56
754 926 6.016527 CGTAGTCCTTGGTAGATGTAGCATTA 60.017 42.308 2.26 0.00 36.54 1.90
755 927 7.309255 CGTAGTCCTTGGTAGATGTAGCATTAT 60.309 40.741 2.26 0.00 36.54 1.28
756 928 7.380423 AGTCCTTGGTAGATGTAGCATTATT 57.620 36.000 2.26 0.00 36.54 1.40
757 929 7.220030 AGTCCTTGGTAGATGTAGCATTATTG 58.780 38.462 2.26 0.00 36.54 1.90
953 1157 3.484886 CGTCGACCTAGCAACTACAGTAC 60.485 52.174 10.58 0.00 0.00 2.73
954 1158 3.688673 GTCGACCTAGCAACTACAGTACT 59.311 47.826 3.51 0.00 0.00 2.73
955 1159 3.937706 TCGACCTAGCAACTACAGTACTC 59.062 47.826 0.00 0.00 0.00 2.59
956 1160 3.065095 CGACCTAGCAACTACAGTACTCC 59.935 52.174 0.00 0.00 0.00 3.85
957 1161 4.271661 GACCTAGCAACTACAGTACTCCT 58.728 47.826 0.00 0.00 0.00 3.69
958 1162 5.435291 GACCTAGCAACTACAGTACTCCTA 58.565 45.833 0.00 0.00 0.00 2.94
959 1163 5.438833 ACCTAGCAACTACAGTACTCCTAG 58.561 45.833 0.00 0.00 0.00 3.02
960 1164 5.044993 ACCTAGCAACTACAGTACTCCTAGT 60.045 44.000 0.00 0.00 0.00 2.57
1036 1241 1.388837 AACGTGGGTGGTTTTCCTGC 61.389 55.000 0.00 0.00 41.38 4.85
1043 1248 1.148273 TGGTTTTCCTGCTGCTCGT 59.852 52.632 0.00 0.00 41.38 4.18
1044 1249 1.165907 TGGTTTTCCTGCTGCTCGTG 61.166 55.000 0.00 0.00 41.38 4.35
1045 1250 1.081840 GTTTTCCTGCTGCTCGTGC 60.082 57.895 1.71 1.71 40.20 5.34
1046 1251 1.227943 TTTTCCTGCTGCTCGTGCT 60.228 52.632 11.19 0.00 40.48 4.40
1416 1793 2.266055 CGGACCTCCTCAACTGGC 59.734 66.667 0.00 0.00 0.00 4.85
1847 2230 2.718073 CCCGGACTTCTACCCCGTG 61.718 68.421 0.73 0.00 41.53 4.94
1848 2231 1.980772 CCGGACTTCTACCCCGTGT 60.981 63.158 0.00 0.00 41.53 4.49
1907 2290 2.179517 GTCAGCCTCGACCTGACG 59.820 66.667 19.74 0.00 46.56 4.35
1934 2317 1.517913 GTACTACACCTTCGGCGCC 60.518 63.158 19.07 19.07 0.00 6.53
1987 2370 3.200593 GGTGCTCGCAGATGGCAG 61.201 66.667 0.00 0.00 45.17 4.85
1989 2372 4.397832 TGCTCGCAGATGGCAGCA 62.398 61.111 5.19 0.00 46.78 4.41
2009 2392 2.259439 CGGGCTCCGCTACGACTAT 61.259 63.158 0.56 0.00 41.17 2.12
2021 2404 5.438972 CGCTACGACTATGGTAACTTCTAC 58.561 45.833 0.00 0.00 37.61 2.59
2228 2611 4.659874 CGCGGCAACCACGTCAAC 62.660 66.667 0.00 0.00 0.00 3.18
2519 2902 3.335534 GACGACGGCAAGCACGTT 61.336 61.111 0.00 0.00 45.68 3.99
2573 2956 1.290955 CGCCGACCACCTCTACAAA 59.709 57.895 0.00 0.00 0.00 2.83
2633 3016 1.144057 CGGCGGCAAGATACCTCTT 59.856 57.895 10.53 0.00 42.59 2.85
2639 3022 3.430374 GCGGCAAGATACCTCTTAGAACA 60.430 47.826 0.00 0.00 39.78 3.18
2655 3038 6.650390 TCTTAGAACATTGGTACGTTAAACCC 59.350 38.462 3.57 0.00 36.06 4.11
2665 3155 5.772672 TGGTACGTTAAACCCACTTACTAGA 59.227 40.000 3.57 0.00 36.06 2.43
2666 3156 6.093404 GGTACGTTAAACCCACTTACTAGAC 58.907 44.000 0.00 0.00 0.00 2.59
2668 3158 4.168760 CGTTAAACCCACTTACTAGACCG 58.831 47.826 0.00 0.00 0.00 4.79
2669 3159 4.321230 CGTTAAACCCACTTACTAGACCGT 60.321 45.833 0.00 0.00 0.00 4.83
2671 3161 2.895242 ACCCACTTACTAGACCGTCT 57.105 50.000 6.25 6.25 0.00 4.18
2674 3164 4.666512 ACCCACTTACTAGACCGTCTTAA 58.333 43.478 6.31 0.00 0.00 1.85
2678 3168 5.182760 CCACTTACTAGACCGTCTTAACAGT 59.817 44.000 6.31 6.64 0.00 3.55
2679 3169 6.084925 CACTTACTAGACCGTCTTAACAGTG 58.915 44.000 6.31 10.44 0.00 3.66
2680 3170 5.182760 ACTTACTAGACCGTCTTAACAGTGG 59.817 44.000 6.31 4.84 0.00 4.00
2681 3171 2.230750 ACTAGACCGTCTTAACAGTGGC 59.769 50.000 6.31 0.00 0.00 5.01
2682 3172 1.045407 AGACCGTCTTAACAGTGGCA 58.955 50.000 0.00 0.00 0.00 4.92
2683 3173 1.000955 AGACCGTCTTAACAGTGGCAG 59.999 52.381 0.00 0.00 0.00 4.85
2684 3174 1.000506 GACCGTCTTAACAGTGGCAGA 59.999 52.381 0.00 0.00 0.00 4.26
2686 3176 2.038557 ACCGTCTTAACAGTGGCAGATT 59.961 45.455 0.00 0.00 0.00 2.40
2687 3177 3.074412 CCGTCTTAACAGTGGCAGATTT 58.926 45.455 0.00 0.00 0.00 2.17
2688 3178 3.502211 CCGTCTTAACAGTGGCAGATTTT 59.498 43.478 0.00 0.00 0.00 1.82
2689 3179 4.023193 CCGTCTTAACAGTGGCAGATTTTT 60.023 41.667 0.00 0.00 0.00 1.94
2691 3181 5.049405 CGTCTTAACAGTGGCAGATTTTTCT 60.049 40.000 0.00 0.00 0.00 2.52
2692 3182 6.374578 GTCTTAACAGTGGCAGATTTTTCTC 58.625 40.000 0.00 0.00 0.00 2.87
2695 3185 4.574599 ACAGTGGCAGATTTTTCTCAAC 57.425 40.909 0.00 0.00 0.00 3.18
2698 3188 4.074970 AGTGGCAGATTTTTCTCAACGAT 58.925 39.130 0.00 0.00 0.00 3.73
2700 3190 5.705441 AGTGGCAGATTTTTCTCAACGATTA 59.295 36.000 0.00 0.00 0.00 1.75
2703 3193 8.181573 GTGGCAGATTTTTCTCAACGATTATAA 58.818 33.333 0.00 0.00 0.00 0.98
2704 3194 8.181573 TGGCAGATTTTTCTCAACGATTATAAC 58.818 33.333 0.00 0.00 0.00 1.89
2705 3195 8.181573 GGCAGATTTTTCTCAACGATTATAACA 58.818 33.333 0.00 0.00 0.00 2.41
2750 3240 2.266055 GGTTCCTCTCCGGCACTG 59.734 66.667 0.00 0.00 0.00 3.66
2753 3243 2.293318 TTCCTCTCCGGCACTGCAT 61.293 57.895 2.82 0.00 0.00 3.96
2754 3244 0.975556 TTCCTCTCCGGCACTGCATA 60.976 55.000 2.82 0.00 0.00 3.14
2756 3246 0.107456 CCTCTCCGGCACTGCATATT 59.893 55.000 2.82 0.00 0.00 1.28
2757 3247 1.344438 CCTCTCCGGCACTGCATATTA 59.656 52.381 2.82 0.00 0.00 0.98
2758 3248 2.224281 CCTCTCCGGCACTGCATATTAA 60.224 50.000 2.82 0.00 0.00 1.40
2759 3249 2.802816 CTCTCCGGCACTGCATATTAAC 59.197 50.000 2.82 0.00 0.00 2.01
2760 3250 2.169561 TCTCCGGCACTGCATATTAACA 59.830 45.455 2.82 0.00 0.00 2.41
2764 3254 4.065088 CCGGCACTGCATATTAACATACT 58.935 43.478 2.82 0.00 0.00 2.12
2766 3256 5.334105 CCGGCACTGCATATTAACATACTTC 60.334 44.000 2.82 0.00 0.00 3.01
2768 3258 6.073058 CGGCACTGCATATTAACATACTTCAT 60.073 38.462 2.82 0.00 0.00 2.57
2769 3259 7.301054 GGCACTGCATATTAACATACTTCATC 58.699 38.462 2.82 0.00 0.00 2.92
2770 3260 7.011773 GCACTGCATATTAACATACTTCATCG 58.988 38.462 0.00 0.00 0.00 3.84
2771 3261 7.095649 GCACTGCATATTAACATACTTCATCGA 60.096 37.037 0.00 0.00 0.00 3.59
2772 3262 8.217115 CACTGCATATTAACATACTTCATCGAC 58.783 37.037 0.00 0.00 0.00 4.20
2794 3284 3.072211 GTCCCCTGCACTAACTAACAAC 58.928 50.000 0.00 0.00 0.00 3.32
2797 3287 3.496160 CCCCTGCACTAACTAACAACTGT 60.496 47.826 0.00 0.00 0.00 3.55
2798 3288 4.134563 CCCTGCACTAACTAACAACTGTT 58.865 43.478 0.07 0.07 41.73 3.16
2812 3302 4.397420 ACAACTGTTATGCTCAATGGTGA 58.603 39.130 0.00 0.00 0.00 4.02
2829 3319 1.863454 GTGAATTCTGCGCAGATCGAT 59.137 47.619 38.40 26.54 41.67 3.59
2839 3329 1.146637 GCAGATCGATCACTCCATGC 58.853 55.000 26.47 20.89 0.00 4.06
2886 3376 3.845781 ATGAGCATATTGTCGAGGGTT 57.154 42.857 0.00 0.00 0.00 4.11
2913 3403 1.153127 AAAGGCCGTCGGTGACAAA 60.153 52.632 13.94 0.00 32.09 2.83
2940 3430 2.289444 CCTCTACGTGTTCAACCATGGT 60.289 50.000 13.00 13.00 0.00 3.55
2955 3445 3.072915 ACCATGGTGAGTCAGACATCAAA 59.927 43.478 18.99 0.00 32.07 2.69
3003 3493 2.109126 GTCGGCCAAGATCAGCACC 61.109 63.158 2.24 0.00 0.00 5.01
3017 3509 3.466836 TCAGCACCGATATCAATCAACC 58.533 45.455 3.12 0.00 31.93 3.77
3118 3633 3.844211 TGAGGGCTAGACAGGTTATTTGT 59.156 43.478 0.00 0.00 0.00 2.83
3147 3838 8.932791 TGTATCTTTTAGTTACTGCAAACTAGC 58.067 33.333 10.16 0.00 41.63 3.42
3193 3886 9.734620 CTCTAAAACTCAAACAAACATTGATGA 57.265 29.630 0.00 1.16 36.30 2.92
3225 3975 8.537728 TCAATAGTCAATAAATTTCCCAGCAT 57.462 30.769 0.00 0.00 0.00 3.79
3226 3976 9.639563 TCAATAGTCAATAAATTTCCCAGCATA 57.360 29.630 0.00 0.00 0.00 3.14
3227 3977 9.903682 CAATAGTCAATAAATTTCCCAGCATAG 57.096 33.333 0.00 0.00 0.00 2.23
3268 4048 5.126061 AGGATGCAATCTGTAAAACACCATC 59.874 40.000 0.00 0.00 44.71 3.51
3334 4117 3.644884 CGGAGCTAGACGGTGATTATT 57.355 47.619 0.00 0.00 0.00 1.40
3335 4118 3.309388 CGGAGCTAGACGGTGATTATTG 58.691 50.000 0.00 0.00 0.00 1.90
3336 4119 3.654414 GGAGCTAGACGGTGATTATTGG 58.346 50.000 0.00 0.00 0.00 3.16
3337 4120 3.555168 GGAGCTAGACGGTGATTATTGGG 60.555 52.174 0.00 0.00 0.00 4.12
3338 4121 2.368875 AGCTAGACGGTGATTATTGGGG 59.631 50.000 0.00 0.00 0.00 4.96
3339 4122 2.550208 GCTAGACGGTGATTATTGGGGG 60.550 54.545 0.00 0.00 0.00 5.40
3370 4153 3.385193 AAAACGCTCAATTTCCAAGGG 57.615 42.857 0.00 0.00 0.00 3.95
3371 4154 2.286365 AACGCTCAATTTCCAAGGGA 57.714 45.000 0.00 0.00 0.00 4.20
3372 4155 2.514458 ACGCTCAATTTCCAAGGGAT 57.486 45.000 0.00 0.00 0.00 3.85
3373 4156 3.644966 ACGCTCAATTTCCAAGGGATA 57.355 42.857 0.00 0.00 0.00 2.59
3374 4157 3.963129 ACGCTCAATTTCCAAGGGATAA 58.037 40.909 0.00 0.00 0.00 1.75
3375 4158 4.340617 ACGCTCAATTTCCAAGGGATAAA 58.659 39.130 0.00 0.00 0.00 1.40
3376 4159 4.770010 ACGCTCAATTTCCAAGGGATAAAA 59.230 37.500 0.00 0.00 0.00 1.52
3377 4160 5.422012 ACGCTCAATTTCCAAGGGATAAAAT 59.578 36.000 0.00 0.00 0.00 1.82
3378 4161 6.605594 ACGCTCAATTTCCAAGGGATAAAATA 59.394 34.615 0.00 0.00 0.00 1.40
3379 4162 6.918022 CGCTCAATTTCCAAGGGATAAAATAC 59.082 38.462 0.00 0.00 0.00 1.89
3380 4163 7.210174 GCTCAATTTCCAAGGGATAAAATACC 58.790 38.462 0.00 0.00 0.00 2.73
3381 4164 7.669089 TCAATTTCCAAGGGATAAAATACCC 57.331 36.000 0.00 0.00 45.88 3.69
3406 4189 3.744940 AAATTCAATCTCAGCCCTCCA 57.255 42.857 0.00 0.00 0.00 3.86
3407 4190 3.744940 AATTCAATCTCAGCCCTCCAA 57.255 42.857 0.00 0.00 0.00 3.53
3408 4191 3.744940 ATTCAATCTCAGCCCTCCAAA 57.255 42.857 0.00 0.00 0.00 3.28
3409 4192 3.524095 TTCAATCTCAGCCCTCCAAAA 57.476 42.857 0.00 0.00 0.00 2.44
3410 4193 3.524095 TCAATCTCAGCCCTCCAAAAA 57.476 42.857 0.00 0.00 0.00 1.94
3432 4215 6.959639 AAAATTTCTTCACAGAACTAGCCA 57.040 33.333 0.00 0.00 38.86 4.75
3433 4216 6.959639 AAATTTCTTCACAGAACTAGCCAA 57.040 33.333 0.00 0.00 38.86 4.52
3434 4217 6.566197 AATTTCTTCACAGAACTAGCCAAG 57.434 37.500 0.00 0.00 38.86 3.61
3435 4218 3.685139 TCTTCACAGAACTAGCCAAGG 57.315 47.619 0.00 0.00 0.00 3.61
3436 4219 2.079925 CTTCACAGAACTAGCCAAGGC 58.920 52.381 2.02 2.02 42.33 4.35
3749 4532 3.737559 TTGCCTCCCAAGAACATATGT 57.262 42.857 1.41 1.41 0.00 2.29
3766 4549 0.033504 TGTTCAAGGTGAGCCTCGAC 59.966 55.000 0.00 0.00 46.33 4.20
3781 4564 0.518636 TCGACCTTACGTGGTTCGAG 59.481 55.000 0.00 0.00 41.00 4.04
3796 4579 0.391661 TCGAGTACTACGCCTTCGGT 60.392 55.000 0.00 0.00 40.69 4.69
3797 4580 0.247974 CGAGTACTACGCCTTCGGTG 60.248 60.000 0.00 0.00 40.69 4.94
3809 4592 0.930310 CTTCGGTGCATACGACCATG 59.070 55.000 14.78 4.18 40.45 3.66
3828 4612 3.741476 ACCGAGACGTACGTGCCC 61.741 66.667 28.16 11.83 0.00 5.36
3853 4637 2.259818 CGCTCAGAGACGGCAACT 59.740 61.111 0.00 0.00 0.00 3.16
3855 4639 0.798771 CGCTCAGAGACGGCAACTAC 60.799 60.000 0.00 0.00 0.00 2.73
3883 4667 0.989890 CTGCGACTACGGTAACTTGC 59.010 55.000 0.00 0.00 40.15 4.01
3896 4680 0.968405 AACTTGCACGCATCCCAAAT 59.032 45.000 0.00 0.00 0.00 2.32
3961 4745 1.598962 AACGAGTCGGACTCCACGA 60.599 57.895 27.55 0.00 42.12 4.35
3991 4781 2.568623 AGCAAAAATCAGGTCGTCCT 57.431 45.000 0.00 0.00 46.37 3.85
3992 4782 3.695830 AGCAAAAATCAGGTCGTCCTA 57.304 42.857 0.00 0.00 43.07 2.94
3993 4783 4.222124 AGCAAAAATCAGGTCGTCCTAT 57.778 40.909 0.00 0.00 43.07 2.57
3998 4788 0.467474 ATCAGGTCGTCCTATGCCGA 60.467 55.000 0.00 0.00 43.07 5.54
4010 4800 1.674441 CTATGCCGACGACCTCTACAA 59.326 52.381 0.00 0.00 0.00 2.41
4011 4801 0.456221 ATGCCGACGACCTCTACAAG 59.544 55.000 0.00 0.00 0.00 3.16
4014 4804 1.592400 CCGACGACCTCTACAAGCCA 61.592 60.000 0.00 0.00 0.00 4.75
4022 4812 2.224548 ACCTCTACAAGCCAACCTTCAC 60.225 50.000 0.00 0.00 0.00 3.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
3 4 4.436050 GGATGCATCAACGTTAAGTGACAG 60.436 45.833 27.25 0.00 0.00 3.51
76 77 1.302511 GCAACGAAGGAGCCAAGGA 60.303 57.895 0.00 0.00 0.00 3.36
104 105 1.537562 GCTGCATATTCAAGCTTGGCC 60.538 52.381 25.73 0.00 0.00 5.36
380 547 1.068585 GACGGAGGTTCCACACGTT 59.931 57.895 0.00 0.00 37.96 3.99
423 590 5.057149 TCCACTAAAGCAACAGAGAGAAAC 58.943 41.667 0.00 0.00 0.00 2.78
484 651 3.752704 TTTTTGACGGGAAGGCCG 58.247 55.556 0.00 0.00 33.83 6.13
524 694 8.308851 AGAGAGGGTTAGATTAGGAAGTTTAC 57.691 38.462 0.00 0.00 0.00 2.01
543 713 3.523564 TGTTAAAATCAGGGGGAGAGAGG 59.476 47.826 0.00 0.00 0.00 3.69
572 744 1.705186 AGGTGTAGCATTGTCCAAGGT 59.295 47.619 0.00 0.00 0.00 3.50
573 745 2.496899 AGGTGTAGCATTGTCCAAGG 57.503 50.000 0.00 0.00 0.00 3.61
574 746 2.930040 CGTAGGTGTAGCATTGTCCAAG 59.070 50.000 0.00 0.00 0.00 3.61
575 747 2.563620 TCGTAGGTGTAGCATTGTCCAA 59.436 45.455 0.00 0.00 0.00 3.53
576 748 2.172679 TCGTAGGTGTAGCATTGTCCA 58.827 47.619 0.00 0.00 0.00 4.02
577 749 2.953466 TCGTAGGTGTAGCATTGTCC 57.047 50.000 0.00 0.00 0.00 4.02
578 750 4.689345 ACTTTTCGTAGGTGTAGCATTGTC 59.311 41.667 0.00 0.00 0.00 3.18
579 751 4.638304 ACTTTTCGTAGGTGTAGCATTGT 58.362 39.130 0.00 0.00 0.00 2.71
580 752 6.715344 TTACTTTTCGTAGGTGTAGCATTG 57.285 37.500 0.00 0.00 0.00 2.82
582 754 9.909644 CTATATTACTTTTCGTAGGTGTAGCAT 57.090 33.333 0.00 0.00 0.00 3.79
583 755 8.355169 CCTATATTACTTTTCGTAGGTGTAGCA 58.645 37.037 0.00 0.00 0.00 3.49
584 756 8.571336 TCCTATATTACTTTTCGTAGGTGTAGC 58.429 37.037 0.00 0.00 32.48 3.58
586 758 9.632638 ACTCCTATATTACTTTTCGTAGGTGTA 57.367 33.333 0.00 0.00 35.48 2.90
587 759 8.530804 ACTCCTATATTACTTTTCGTAGGTGT 57.469 34.615 0.00 0.00 33.58 4.16
588 760 9.813446 AAACTCCTATATTACTTTTCGTAGGTG 57.187 33.333 0.00 0.00 32.48 4.00
593 765 9.860898 ACGTAAAACTCCTATATTACTTTTCGT 57.139 29.630 0.00 0.00 0.00 3.85
602 774 9.880157 TCAGCTTTTACGTAAAACTCCTATATT 57.120 29.630 25.60 5.04 32.31 1.28
604 776 9.309516 CATCAGCTTTTACGTAAAACTCCTATA 57.690 33.333 25.60 14.50 32.31 1.31
605 777 7.822822 ACATCAGCTTTTACGTAAAACTCCTAT 59.177 33.333 25.60 16.68 32.31 2.57
606 778 7.117236 CACATCAGCTTTTACGTAAAACTCCTA 59.883 37.037 25.60 15.61 32.31 2.94
607 779 5.995897 ACATCAGCTTTTACGTAAAACTCCT 59.004 36.000 25.60 18.84 32.31 3.69
608 780 6.077838 CACATCAGCTTTTACGTAAAACTCC 58.922 40.000 25.60 17.28 32.31 3.85
609 781 6.073440 TCCACATCAGCTTTTACGTAAAACTC 60.073 38.462 25.60 19.77 32.31 3.01
610 782 5.761234 TCCACATCAGCTTTTACGTAAAACT 59.239 36.000 25.60 22.62 32.31 2.66
611 783 5.992729 TCCACATCAGCTTTTACGTAAAAC 58.007 37.500 25.60 21.16 32.31 2.43
612 784 5.992829 TCTCCACATCAGCTTTTACGTAAAA 59.007 36.000 26.99 26.99 34.35 1.52
613 785 5.543714 TCTCCACATCAGCTTTTACGTAAA 58.456 37.500 16.59 16.59 0.00 2.01
614 786 5.142061 TCTCCACATCAGCTTTTACGTAA 57.858 39.130 3.29 3.29 0.00 3.18
615 787 4.794278 TCTCCACATCAGCTTTTACGTA 57.206 40.909 0.00 0.00 0.00 3.57
616 788 3.678056 TCTCCACATCAGCTTTTACGT 57.322 42.857 0.00 0.00 0.00 3.57
617 789 4.092091 GTCTTCTCCACATCAGCTTTTACG 59.908 45.833 0.00 0.00 0.00 3.18
618 790 5.241662 AGTCTTCTCCACATCAGCTTTTAC 58.758 41.667 0.00 0.00 0.00 2.01
619 791 5.489792 AGTCTTCTCCACATCAGCTTTTA 57.510 39.130 0.00 0.00 0.00 1.52
620 792 4.363991 AGTCTTCTCCACATCAGCTTTT 57.636 40.909 0.00 0.00 0.00 2.27
621 793 5.489792 TTAGTCTTCTCCACATCAGCTTT 57.510 39.130 0.00 0.00 0.00 3.51
622 794 5.690464 ATTAGTCTTCTCCACATCAGCTT 57.310 39.130 0.00 0.00 0.00 3.74
623 795 5.426504 CAATTAGTCTTCTCCACATCAGCT 58.573 41.667 0.00 0.00 0.00 4.24
624 796 4.574013 CCAATTAGTCTTCTCCACATCAGC 59.426 45.833 0.00 0.00 0.00 4.26
625 797 5.121811 CCCAATTAGTCTTCTCCACATCAG 58.878 45.833 0.00 0.00 0.00 2.90
626 798 4.626287 GCCCAATTAGTCTTCTCCACATCA 60.626 45.833 0.00 0.00 0.00 3.07
627 799 3.879892 GCCCAATTAGTCTTCTCCACATC 59.120 47.826 0.00 0.00 0.00 3.06
628 800 3.372025 GGCCCAATTAGTCTTCTCCACAT 60.372 47.826 0.00 0.00 0.00 3.21
629 801 2.026262 GGCCCAATTAGTCTTCTCCACA 60.026 50.000 0.00 0.00 0.00 4.17
630 802 2.026262 TGGCCCAATTAGTCTTCTCCAC 60.026 50.000 0.00 0.00 0.00 4.02
631 803 2.274542 TGGCCCAATTAGTCTTCTCCA 58.725 47.619 0.00 0.00 0.00 3.86
632 804 3.366052 TTGGCCCAATTAGTCTTCTCC 57.634 47.619 0.00 0.00 0.00 3.71
633 805 5.921962 ATTTTGGCCCAATTAGTCTTCTC 57.078 39.130 0.00 0.00 0.00 2.87
634 806 6.127338 GCTAATTTTGGCCCAATTAGTCTTCT 60.127 38.462 28.68 6.52 42.56 2.85
635 807 6.042777 GCTAATTTTGGCCCAATTAGTCTTC 58.957 40.000 28.68 17.36 42.56 2.87
636 808 5.483583 TGCTAATTTTGGCCCAATTAGTCTT 59.516 36.000 28.68 8.13 42.56 3.01
637 809 5.022787 TGCTAATTTTGGCCCAATTAGTCT 58.977 37.500 28.68 8.09 42.56 3.24
638 810 5.337578 TGCTAATTTTGGCCCAATTAGTC 57.662 39.130 28.68 23.70 42.56 2.59
639 811 4.383010 GCTGCTAATTTTGGCCCAATTAGT 60.383 41.667 28.68 6.46 42.56 2.24
640 812 4.122046 GCTGCTAATTTTGGCCCAATTAG 58.878 43.478 26.45 26.45 43.09 1.73
641 813 3.774216 AGCTGCTAATTTTGGCCCAATTA 59.226 39.130 0.00 13.85 33.25 1.40
642 814 2.573009 AGCTGCTAATTTTGGCCCAATT 59.427 40.909 13.17 13.17 33.25 2.32
643 815 2.093341 CAGCTGCTAATTTTGGCCCAAT 60.093 45.455 0.00 0.00 33.25 3.16
644 816 1.275856 CAGCTGCTAATTTTGGCCCAA 59.724 47.619 0.00 0.00 33.25 4.12
645 817 0.896923 CAGCTGCTAATTTTGGCCCA 59.103 50.000 0.00 0.00 33.25 5.36
646 818 0.176449 CCAGCTGCTAATTTTGGCCC 59.824 55.000 8.66 0.00 33.25 5.80
647 819 0.176449 CCCAGCTGCTAATTTTGGCC 59.824 55.000 8.66 0.00 33.25 5.36
648 820 0.176449 CCCCAGCTGCTAATTTTGGC 59.824 55.000 8.66 0.00 34.98 4.52
649 821 0.176449 GCCCCAGCTGCTAATTTTGG 59.824 55.000 8.66 0.81 35.50 3.28
650 822 0.176449 GGCCCCAGCTGCTAATTTTG 59.824 55.000 8.66 0.00 39.73 2.44
651 823 0.977627 GGGCCCCAGCTGCTAATTTT 60.978 55.000 12.23 0.00 39.73 1.82
652 824 1.381735 GGGCCCCAGCTGCTAATTT 60.382 57.895 12.23 0.00 39.73 1.82
653 825 1.953100 ATGGGCCCCAGCTGCTAATT 61.953 55.000 22.27 0.00 36.75 1.40
654 826 2.363292 GATGGGCCCCAGCTGCTAAT 62.363 60.000 22.27 1.27 36.92 1.73
655 827 3.023116 ATGGGCCCCAGCTGCTAA 61.023 61.111 22.27 0.00 36.75 3.09
656 828 3.492353 GATGGGCCCCAGCTGCTA 61.492 66.667 22.27 0.00 36.92 3.49
666 838 2.871795 ATTTTCACCGGGGATGGGCC 62.872 60.000 7.56 0.00 0.00 5.80
667 839 1.381191 ATTTTCACCGGGGATGGGC 60.381 57.895 7.56 0.00 0.00 5.36
668 840 0.033601 TGATTTTCACCGGGGATGGG 60.034 55.000 7.56 0.00 0.00 4.00
669 841 1.392589 CTGATTTTCACCGGGGATGG 58.607 55.000 7.56 0.00 0.00 3.51
670 842 1.392589 CCTGATTTTCACCGGGGATG 58.607 55.000 7.56 0.00 0.00 3.51
671 843 3.903208 CCTGATTTTCACCGGGGAT 57.097 52.632 7.56 0.00 0.00 3.85
673 845 1.379843 CCCCTGATTTTCACCGGGG 60.380 63.158 6.32 0.00 43.17 5.73
674 846 1.379843 CCCCCTGATTTTCACCGGG 60.380 63.158 6.32 0.00 33.05 5.73
675 847 4.337013 CCCCCTGATTTTCACCGG 57.663 61.111 0.00 0.00 0.00 5.28
689 861 0.252239 AACAAATCCTCTTGGCCCCC 60.252 55.000 0.00 0.00 0.00 5.40
690 862 1.276138 CAAACAAATCCTCTTGGCCCC 59.724 52.381 0.00 0.00 0.00 5.80
691 863 2.247358 TCAAACAAATCCTCTTGGCCC 58.753 47.619 0.00 0.00 0.00 5.80
692 864 4.309933 CTTTCAAACAAATCCTCTTGGCC 58.690 43.478 0.00 0.00 0.00 5.36
693 865 4.309933 CCTTTCAAACAAATCCTCTTGGC 58.690 43.478 0.00 0.00 0.00 4.52
694 866 4.039609 AGCCTTTCAAACAAATCCTCTTGG 59.960 41.667 0.00 0.00 0.00 3.61
695 867 5.205759 AGCCTTTCAAACAAATCCTCTTG 57.794 39.130 0.00 0.00 0.00 3.02
696 868 5.507985 CGAAGCCTTTCAAACAAATCCTCTT 60.508 40.000 0.00 0.00 32.67 2.85
697 869 4.022849 CGAAGCCTTTCAAACAAATCCTCT 60.023 41.667 0.00 0.00 32.67 3.69
698 870 4.229876 CGAAGCCTTTCAAACAAATCCTC 58.770 43.478 0.00 0.00 32.67 3.71
699 871 3.636764 ACGAAGCCTTTCAAACAAATCCT 59.363 39.130 0.00 0.00 32.67 3.24
700 872 3.977427 ACGAAGCCTTTCAAACAAATCC 58.023 40.909 0.00 0.00 32.67 3.01
701 873 5.154222 CCTACGAAGCCTTTCAAACAAATC 58.846 41.667 0.00 0.00 32.67 2.17
702 874 4.583073 ACCTACGAAGCCTTTCAAACAAAT 59.417 37.500 0.00 0.00 32.67 2.32
703 875 3.949113 ACCTACGAAGCCTTTCAAACAAA 59.051 39.130 0.00 0.00 32.67 2.83
704 876 3.547746 ACCTACGAAGCCTTTCAAACAA 58.452 40.909 0.00 0.00 32.67 2.83
705 877 3.135994 GACCTACGAAGCCTTTCAAACA 58.864 45.455 0.00 0.00 32.67 2.83
706 878 3.400255 AGACCTACGAAGCCTTTCAAAC 58.600 45.455 0.00 0.00 32.67 2.93
707 879 3.764237 AGACCTACGAAGCCTTTCAAA 57.236 42.857 0.00 0.00 32.67 2.69
708 880 3.660865 GAAGACCTACGAAGCCTTTCAA 58.339 45.455 0.00 0.00 32.67 2.69
709 881 2.352421 CGAAGACCTACGAAGCCTTTCA 60.352 50.000 0.00 0.00 32.67 2.69
710 882 2.260481 CGAAGACCTACGAAGCCTTTC 58.740 52.381 0.00 0.00 0.00 2.62
711 883 1.617357 ACGAAGACCTACGAAGCCTTT 59.383 47.619 0.00 0.00 0.00 3.11
712 884 1.254954 ACGAAGACCTACGAAGCCTT 58.745 50.000 0.00 0.00 0.00 4.35
713 885 2.015587 CTACGAAGACCTACGAAGCCT 58.984 52.381 0.00 0.00 0.00 4.58
714 886 1.742268 ACTACGAAGACCTACGAAGCC 59.258 52.381 0.00 0.00 0.00 4.35
715 887 2.223226 GGACTACGAAGACCTACGAAGC 60.223 54.545 0.00 0.00 35.02 3.86
716 888 3.269178 AGGACTACGAAGACCTACGAAG 58.731 50.000 0.00 0.00 44.70 3.79
717 889 3.340814 AGGACTACGAAGACCTACGAA 57.659 47.619 0.00 0.00 44.70 3.85
718 890 3.005554 CAAGGACTACGAAGACCTACGA 58.994 50.000 0.00 0.00 45.62 3.43
719 891 2.097142 CCAAGGACTACGAAGACCTACG 59.903 54.545 0.00 0.00 45.62 3.51
720 892 3.087781 ACCAAGGACTACGAAGACCTAC 58.912 50.000 0.00 0.00 45.62 3.18
721 893 3.446442 ACCAAGGACTACGAAGACCTA 57.554 47.619 0.00 0.00 45.62 3.08
723 895 3.350833 TCTACCAAGGACTACGAAGACC 58.649 50.000 0.00 0.00 37.77 3.85
724 896 4.398673 ACATCTACCAAGGACTACGAAGAC 59.601 45.833 0.00 0.00 0.00 3.01
725 897 4.597004 ACATCTACCAAGGACTACGAAGA 58.403 43.478 0.00 0.00 0.00 2.87
726 898 4.985538 ACATCTACCAAGGACTACGAAG 57.014 45.455 0.00 0.00 0.00 3.79
727 899 4.337555 GCTACATCTACCAAGGACTACGAA 59.662 45.833 0.00 0.00 0.00 3.85
728 900 3.881688 GCTACATCTACCAAGGACTACGA 59.118 47.826 0.00 0.00 0.00 3.43
729 901 3.630769 TGCTACATCTACCAAGGACTACG 59.369 47.826 0.00 0.00 0.00 3.51
730 902 5.793030 ATGCTACATCTACCAAGGACTAC 57.207 43.478 0.00 0.00 0.00 2.73
731 903 8.367911 CAATAATGCTACATCTACCAAGGACTA 58.632 37.037 0.00 0.00 0.00 2.59
732 904 7.147479 ACAATAATGCTACATCTACCAAGGACT 60.147 37.037 0.00 0.00 0.00 3.85
733 905 6.992715 ACAATAATGCTACATCTACCAAGGAC 59.007 38.462 0.00 0.00 0.00 3.85
734 906 6.992123 CACAATAATGCTACATCTACCAAGGA 59.008 38.462 0.00 0.00 0.00 3.36
735 907 6.205464 CCACAATAATGCTACATCTACCAAGG 59.795 42.308 0.00 0.00 0.00 3.61
736 908 6.293626 GCCACAATAATGCTACATCTACCAAG 60.294 42.308 0.00 0.00 0.00 3.61
737 909 5.530915 GCCACAATAATGCTACATCTACCAA 59.469 40.000 0.00 0.00 0.00 3.67
738 910 5.063204 GCCACAATAATGCTACATCTACCA 58.937 41.667 0.00 0.00 0.00 3.25
739 911 4.455877 GGCCACAATAATGCTACATCTACC 59.544 45.833 0.00 0.00 0.00 3.18
740 912 4.455877 GGGCCACAATAATGCTACATCTAC 59.544 45.833 4.39 0.00 0.00 2.59
741 913 4.506625 GGGGCCACAATAATGCTACATCTA 60.507 45.833 4.39 0.00 0.00 1.98
742 914 3.490348 GGGCCACAATAATGCTACATCT 58.510 45.455 4.39 0.00 0.00 2.90
743 915 2.558359 GGGGCCACAATAATGCTACATC 59.442 50.000 4.39 0.00 0.00 3.06
744 916 2.177669 AGGGGCCACAATAATGCTACAT 59.822 45.455 8.31 0.00 0.00 2.29
745 917 1.568597 AGGGGCCACAATAATGCTACA 59.431 47.619 8.31 0.00 0.00 2.74
746 918 2.230660 GAGGGGCCACAATAATGCTAC 58.769 52.381 8.31 0.00 0.00 3.58
747 919 1.144913 GGAGGGGCCACAATAATGCTA 59.855 52.381 8.31 0.00 36.34 3.49
748 920 0.106015 GGAGGGGCCACAATAATGCT 60.106 55.000 8.31 0.00 36.34 3.79
749 921 0.106015 AGGAGGGGCCACAATAATGC 60.106 55.000 8.31 0.00 40.02 3.56
750 922 1.063717 ACAGGAGGGGCCACAATAATG 60.064 52.381 8.31 0.24 40.02 1.90
751 923 1.215423 GACAGGAGGGGCCACAATAAT 59.785 52.381 8.31 0.00 40.02 1.28
752 924 0.623723 GACAGGAGGGGCCACAATAA 59.376 55.000 8.31 0.00 40.02 1.40
753 925 1.279025 GGACAGGAGGGGCCACAATA 61.279 60.000 8.31 0.00 40.02 1.90
754 926 2.616458 GGACAGGAGGGGCCACAAT 61.616 63.158 8.31 0.00 40.02 2.71
755 927 2.409984 TAGGACAGGAGGGGCCACAA 62.410 60.000 8.31 0.00 40.02 3.33
756 928 2.409984 TTAGGACAGGAGGGGCCACA 62.410 60.000 8.31 0.00 40.02 4.17
757 929 0.988678 ATTAGGACAGGAGGGGCCAC 60.989 60.000 4.39 0.00 40.02 5.01
953 1157 1.630148 CTCGCGGTTCAAACTAGGAG 58.370 55.000 6.13 0.00 0.00 3.69
954 1158 0.389426 GCTCGCGGTTCAAACTAGGA 60.389 55.000 6.13 0.00 0.00 2.94
955 1159 0.669318 TGCTCGCGGTTCAAACTAGG 60.669 55.000 6.13 0.00 0.00 3.02
956 1160 0.716108 CTGCTCGCGGTTCAAACTAG 59.284 55.000 6.13 0.00 0.00 2.57
957 1161 1.289109 GCTGCTCGCGGTTCAAACTA 61.289 55.000 6.13 0.00 0.00 2.24
958 1162 2.607892 GCTGCTCGCGGTTCAAACT 61.608 57.895 6.13 0.00 0.00 2.66
959 1163 2.127232 GCTGCTCGCGGTTCAAAC 60.127 61.111 6.13 0.00 0.00 2.93
960 1164 2.590291 TGCTGCTCGCGGTTCAAA 60.590 55.556 6.13 0.00 43.27 2.69
1016 1221 0.666374 CAGGAAAACCACCCACGTTC 59.334 55.000 0.00 0.00 0.00 3.95
1036 1241 3.476646 CGACAGCAGCACGAGCAG 61.477 66.667 7.77 0.00 45.49 4.24
1043 1248 3.961197 ACGACGACGACAGCAGCA 61.961 61.111 15.32 0.00 42.66 4.41
1044 1249 3.461982 CACGACGACGACAGCAGC 61.462 66.667 15.32 0.00 42.66 5.25
1045 1250 2.801162 CCACGACGACGACAGCAG 60.801 66.667 15.32 0.00 42.66 4.24
1046 1251 4.994201 GCCACGACGACGACAGCA 62.994 66.667 15.32 0.00 42.66 4.41
1407 1784 0.035725 TGGAGCATGAGCCAGTTGAG 60.036 55.000 0.00 0.00 43.56 3.02
1644 2027 3.723348 GAAGGCGGTGGCGTTGAC 61.723 66.667 0.00 0.00 46.39 3.18
1658 2041 2.048503 GTGGTCGGGTCACGGAAG 60.049 66.667 0.00 0.00 44.45 3.46
1904 2287 0.443869 TGTAGTACTCGAACCGCGTC 59.556 55.000 4.92 0.00 41.80 5.19
1907 2290 0.807496 AGGTGTAGTACTCGAACCGC 59.193 55.000 0.00 0.00 35.99 5.68
1934 2317 1.086067 TCTCGGTAGCGTGGTCGTAG 61.086 60.000 14.79 2.37 39.49 3.51
1946 2329 3.909662 GGCACGTAGGTCTCGGTA 58.090 61.111 0.00 0.00 0.00 4.02
1972 2355 3.905437 TTGCTGCCATCTGCGAGCA 62.905 57.895 0.00 0.00 45.75 4.26
2009 2392 1.246649 TGGACGCGTAGAAGTTACCA 58.753 50.000 13.97 10.24 0.00 3.25
2459 2842 2.603776 ACCGCCGTCCTCTCCTTT 60.604 61.111 0.00 0.00 0.00 3.11
2519 2902 0.798159 GATCGTTGCACATGAGCACA 59.202 50.000 17.82 6.61 45.61 4.57
2633 3016 5.700373 GTGGGTTTAACGTACCAATGTTCTA 59.300 40.000 8.21 0.00 37.40 2.10
2639 3022 5.868454 AGTAAGTGGGTTTAACGTACCAAT 58.132 37.500 8.21 0.04 37.40 3.16
2655 3038 6.084925 CACTGTTAAGACGGTCTAGTAAGTG 58.915 44.000 20.13 20.13 43.48 3.16
2665 3155 1.045407 TCTGCCACTGTTAAGACGGT 58.955 50.000 0.00 0.00 46.23 4.83
2666 3156 2.386661 ATCTGCCACTGTTAAGACGG 57.613 50.000 0.00 0.00 38.17 4.79
2668 3158 6.017109 TGAGAAAAATCTGCCACTGTTAAGAC 60.017 38.462 0.00 0.00 0.00 3.01
2669 3159 6.061441 TGAGAAAAATCTGCCACTGTTAAGA 58.939 36.000 0.00 0.00 0.00 2.10
2671 3161 6.503524 GTTGAGAAAAATCTGCCACTGTTAA 58.496 36.000 0.00 0.00 0.00 2.01
2674 3164 3.003689 CGTTGAGAAAAATCTGCCACTGT 59.996 43.478 0.00 0.00 0.00 3.55
2678 3168 6.757897 ATAATCGTTGAGAAAAATCTGCCA 57.242 33.333 0.00 0.00 0.00 4.92
2679 3169 8.181573 TGTTATAATCGTTGAGAAAAATCTGCC 58.818 33.333 0.00 0.00 0.00 4.85
2680 3170 9.722056 ATGTTATAATCGTTGAGAAAAATCTGC 57.278 29.630 0.00 0.00 0.00 4.26
2686 3176 8.826710 CCAGCTATGTTATAATCGTTGAGAAAA 58.173 33.333 0.00 0.00 0.00 2.29
2687 3177 7.441157 CCCAGCTATGTTATAATCGTTGAGAAA 59.559 37.037 0.00 0.00 0.00 2.52
2688 3178 6.929049 CCCAGCTATGTTATAATCGTTGAGAA 59.071 38.462 0.00 0.00 0.00 2.87
2689 3179 6.455647 CCCAGCTATGTTATAATCGTTGAGA 58.544 40.000 0.00 0.00 0.00 3.27
2691 3181 5.512404 CCCCCAGCTATGTTATAATCGTTGA 60.512 44.000 0.00 0.00 0.00 3.18
2692 3182 4.695455 CCCCCAGCTATGTTATAATCGTTG 59.305 45.833 0.00 0.00 0.00 4.10
2735 3225 0.975556 TATGCAGTGCCGGAGAGGAA 60.976 55.000 13.72 0.00 45.00 3.36
2739 3229 2.169561 TGTTAATATGCAGTGCCGGAGA 59.830 45.455 13.72 0.00 0.00 3.71
2741 3231 2.700722 TGTTAATATGCAGTGCCGGA 57.299 45.000 13.72 0.00 0.00 5.14
2743 3233 5.236263 TGAAGTATGTTAATATGCAGTGCCG 59.764 40.000 13.72 0.00 0.00 5.69
2746 3236 8.217115 GTCGATGAAGTATGTTAATATGCAGTG 58.783 37.037 3.33 0.00 0.00 3.66
2750 3240 7.334574 ACGTCGATGAAGTATGTTAATATGC 57.665 36.000 12.58 0.00 0.00 3.14
2753 3243 6.441274 GGGACGTCGATGAAGTATGTTAATA 58.559 40.000 12.58 0.00 0.00 0.98
2754 3244 5.287226 GGGACGTCGATGAAGTATGTTAAT 58.713 41.667 12.58 0.00 0.00 1.40
2756 3246 3.067180 GGGGACGTCGATGAAGTATGTTA 59.933 47.826 12.58 0.00 0.00 2.41
2757 3247 2.159142 GGGGACGTCGATGAAGTATGTT 60.159 50.000 12.58 0.00 0.00 2.71
2758 3248 1.407979 GGGGACGTCGATGAAGTATGT 59.592 52.381 12.58 0.00 0.00 2.29
2759 3249 1.681793 AGGGGACGTCGATGAAGTATG 59.318 52.381 12.58 0.00 0.00 2.39
2760 3250 1.681793 CAGGGGACGTCGATGAAGTAT 59.318 52.381 12.58 0.00 0.00 2.12
2764 3254 2.279810 TGCAGGGGACGTCGATGAA 61.280 57.895 12.58 0.00 0.00 2.57
2766 3256 1.663379 TAGTGCAGGGGACGTCGATG 61.663 60.000 9.92 9.05 0.00 3.84
2768 3258 1.604308 TTAGTGCAGGGGACGTCGA 60.604 57.895 9.92 0.00 0.00 4.20
2769 3259 1.445582 GTTAGTGCAGGGGACGTCG 60.446 63.158 9.92 0.00 0.00 5.12
2770 3260 1.180029 TAGTTAGTGCAGGGGACGTC 58.820 55.000 7.13 7.13 0.00 4.34
2771 3261 1.274447 GTTAGTTAGTGCAGGGGACGT 59.726 52.381 0.00 0.00 0.00 4.34
2772 3262 1.274167 TGTTAGTTAGTGCAGGGGACG 59.726 52.381 0.00 0.00 0.00 4.79
2794 3284 6.263344 CAGAATTCACCATTGAGCATAACAG 58.737 40.000 8.44 0.00 31.71 3.16
2797 3287 4.201940 CGCAGAATTCACCATTGAGCATAA 60.202 41.667 8.44 0.00 31.71 1.90
2798 3288 3.313249 CGCAGAATTCACCATTGAGCATA 59.687 43.478 8.44 0.00 31.71 3.14
2812 3302 1.863454 GTGATCGATCTGCGCAGAATT 59.137 47.619 40.83 27.61 41.36 2.17
2839 3329 1.746991 GGCCTCCGAAGCTTTCCAG 60.747 63.158 0.00 0.00 0.00 3.86
2844 3334 4.394712 CCGTGGCCTCCGAAGCTT 62.395 66.667 15.66 0.00 0.00 3.74
2886 3376 1.004679 GACGGCCTTTGTCGGGTAA 60.005 57.895 0.00 0.00 45.94 2.85
2907 3397 1.736645 GTAGAGGCGCGCTTTGTCA 60.737 57.895 32.29 8.82 0.00 3.58
2913 3403 3.966026 GAACACGTAGAGGCGCGCT 62.966 63.158 32.29 17.27 34.88 5.92
2940 3430 3.987868 GCGTAACTTTGATGTCTGACTCA 59.012 43.478 9.51 7.48 0.00 3.41
3003 3493 6.095377 TCATCTGATCGGTTGATTGATATCG 58.905 40.000 10.66 0.00 34.09 2.92
3091 3585 0.827368 CCTGTCTAGCCCTCAAGTCC 59.173 60.000 0.00 0.00 0.00 3.85
3118 3633 9.116067 AGTTTGCAGTAACTAAAAGATACACAA 57.884 29.630 1.86 0.12 36.62 3.33
3204 3954 9.693739 TTTCTATGCTGGGAAATTTATTGACTA 57.306 29.630 0.00 0.00 0.00 2.59
3225 3975 4.395625 TCCTTCAGACTGACGAGTTTCTA 58.604 43.478 10.39 0.00 30.16 2.10
3226 3976 3.223435 TCCTTCAGACTGACGAGTTTCT 58.777 45.455 10.39 0.00 30.16 2.52
3227 3977 3.644884 TCCTTCAGACTGACGAGTTTC 57.355 47.619 10.39 0.00 30.16 2.78
3268 4048 5.366829 TGCAGACAATTCTTGAGATGTTG 57.633 39.130 0.00 5.58 0.00 3.33
3309 4092 3.141488 CCGTCTAGCTCCGCCACT 61.141 66.667 0.00 0.00 0.00 4.00
3310 4093 3.450115 ACCGTCTAGCTCCGCCAC 61.450 66.667 0.00 0.00 0.00 5.01
3311 4094 3.449227 CACCGTCTAGCTCCGCCA 61.449 66.667 0.00 0.00 0.00 5.69
3312 4095 2.017559 AATCACCGTCTAGCTCCGCC 62.018 60.000 0.00 0.00 0.00 6.13
3313 4096 0.666913 TAATCACCGTCTAGCTCCGC 59.333 55.000 0.00 0.00 0.00 5.54
3314 4097 3.309388 CAATAATCACCGTCTAGCTCCG 58.691 50.000 0.00 0.00 0.00 4.63
3315 4098 3.555168 CCCAATAATCACCGTCTAGCTCC 60.555 52.174 0.00 0.00 0.00 4.70
3316 4099 3.555168 CCCCAATAATCACCGTCTAGCTC 60.555 52.174 0.00 0.00 0.00 4.09
3317 4100 2.368875 CCCCAATAATCACCGTCTAGCT 59.631 50.000 0.00 0.00 0.00 3.32
3318 4101 2.550208 CCCCCAATAATCACCGTCTAGC 60.550 54.545 0.00 0.00 0.00 3.42
3319 4102 3.402628 CCCCCAATAATCACCGTCTAG 57.597 52.381 0.00 0.00 0.00 2.43
3349 4132 3.386402 TCCCTTGGAAATTGAGCGTTTTT 59.614 39.130 0.00 0.00 0.00 1.94
3350 4133 2.962421 TCCCTTGGAAATTGAGCGTTTT 59.038 40.909 0.00 0.00 0.00 2.43
3351 4134 2.593026 TCCCTTGGAAATTGAGCGTTT 58.407 42.857 0.00 0.00 0.00 3.60
3352 4135 2.286365 TCCCTTGGAAATTGAGCGTT 57.714 45.000 0.00 0.00 0.00 4.84
3353 4136 2.514458 ATCCCTTGGAAATTGAGCGT 57.486 45.000 0.00 0.00 34.34 5.07
3354 4137 4.981806 TTTATCCCTTGGAAATTGAGCG 57.018 40.909 0.00 0.00 34.34 5.03
3355 4138 7.210174 GGTATTTTATCCCTTGGAAATTGAGC 58.790 38.462 0.00 0.00 34.34 4.26
3356 4139 7.344352 TGGGTATTTTATCCCTTGGAAATTGAG 59.656 37.037 0.00 0.00 43.74 3.02
3357 4140 7.192628 TGGGTATTTTATCCCTTGGAAATTGA 58.807 34.615 0.00 0.00 43.74 2.57
3358 4141 7.430760 TGGGTATTTTATCCCTTGGAAATTG 57.569 36.000 0.00 0.00 43.74 2.32
3359 4142 8.456221 TTTGGGTATTTTATCCCTTGGAAATT 57.544 30.769 0.00 0.00 43.74 1.82
3360 4143 8.456221 TTTTGGGTATTTTATCCCTTGGAAAT 57.544 30.769 0.00 0.00 43.74 2.17
3361 4144 7.873699 TTTTGGGTATTTTATCCCTTGGAAA 57.126 32.000 0.00 0.00 43.74 3.13
3362 4145 7.873699 TTTTTGGGTATTTTATCCCTTGGAA 57.126 32.000 0.00 0.00 43.74 3.53
3384 4167 4.419282 TGGAGGGCTGAGATTGAATTTTT 58.581 39.130 0.00 0.00 0.00 1.94
3385 4168 4.051661 TGGAGGGCTGAGATTGAATTTT 57.948 40.909 0.00 0.00 0.00 1.82
3386 4169 3.744940 TGGAGGGCTGAGATTGAATTT 57.255 42.857 0.00 0.00 0.00 1.82
3387 4170 3.744940 TTGGAGGGCTGAGATTGAATT 57.255 42.857 0.00 0.00 0.00 2.17
3388 4171 3.744940 TTTGGAGGGCTGAGATTGAAT 57.255 42.857 0.00 0.00 0.00 2.57
3389 4172 3.524095 TTTTGGAGGGCTGAGATTGAA 57.476 42.857 0.00 0.00 0.00 2.69
3390 4173 3.524095 TTTTTGGAGGGCTGAGATTGA 57.476 42.857 0.00 0.00 0.00 2.57
3408 4191 7.346751 TGGCTAGTTCTGTGAAGAAATTTTT 57.653 32.000 0.00 0.00 0.00 1.94
3409 4192 6.959639 TGGCTAGTTCTGTGAAGAAATTTT 57.040 33.333 0.00 0.00 0.00 1.82
3410 4193 6.015940 CCTTGGCTAGTTCTGTGAAGAAATTT 60.016 38.462 0.00 0.00 0.00 1.82
3411 4194 5.474876 CCTTGGCTAGTTCTGTGAAGAAATT 59.525 40.000 0.00 0.00 0.00 1.82
3412 4195 5.006386 CCTTGGCTAGTTCTGTGAAGAAAT 58.994 41.667 0.00 0.00 0.00 2.17
3413 4196 4.389374 CCTTGGCTAGTTCTGTGAAGAAA 58.611 43.478 0.00 0.00 0.00 2.52
3414 4197 3.807209 GCCTTGGCTAGTTCTGTGAAGAA 60.807 47.826 4.11 0.00 0.00 2.52
3415 4198 2.289694 GCCTTGGCTAGTTCTGTGAAGA 60.290 50.000 4.11 0.00 0.00 2.87
3416 4199 2.079925 GCCTTGGCTAGTTCTGTGAAG 58.920 52.381 4.11 0.00 0.00 3.02
3417 4200 1.608025 CGCCTTGGCTAGTTCTGTGAA 60.608 52.381 10.12 0.00 0.00 3.18
3418 4201 0.037326 CGCCTTGGCTAGTTCTGTGA 60.037 55.000 10.12 0.00 0.00 3.58
3419 4202 1.021390 CCGCCTTGGCTAGTTCTGTG 61.021 60.000 10.12 0.00 0.00 3.66
3420 4203 1.296715 CCGCCTTGGCTAGTTCTGT 59.703 57.895 10.12 0.00 0.00 3.41
3421 4204 1.450312 CCCGCCTTGGCTAGTTCTG 60.450 63.158 10.12 0.00 35.87 3.02
3422 4205 2.990479 CCCGCCTTGGCTAGTTCT 59.010 61.111 10.12 0.00 35.87 3.01
3714 4497 1.081242 GCAAATGTGACCACTGGCG 60.081 57.895 0.00 0.00 0.00 5.69
3715 4498 1.181098 AGGCAAATGTGACCACTGGC 61.181 55.000 0.00 4.37 30.22 4.85
3716 4499 0.883833 GAGGCAAATGTGACCACTGG 59.116 55.000 1.62 0.00 30.22 4.00
3717 4500 0.883833 GGAGGCAAATGTGACCACTG 59.116 55.000 1.62 0.00 30.22 3.66
3718 4501 0.251341 GGGAGGCAAATGTGACCACT 60.251 55.000 1.62 0.00 30.22 4.00
3719 4502 0.539438 TGGGAGGCAAATGTGACCAC 60.539 55.000 0.00 0.00 30.22 4.16
3720 4503 0.187117 TTGGGAGGCAAATGTGACCA 59.813 50.000 0.00 0.00 30.22 4.02
3721 4504 0.890683 CTTGGGAGGCAAATGTGACC 59.109 55.000 0.00 0.00 30.22 4.02
3722 4505 1.909700 TCTTGGGAGGCAAATGTGAC 58.090 50.000 0.00 0.00 0.00 3.67
3723 4506 2.238521 GTTCTTGGGAGGCAAATGTGA 58.761 47.619 0.00 0.00 0.00 3.58
3724 4507 1.962807 TGTTCTTGGGAGGCAAATGTG 59.037 47.619 0.00 0.00 0.00 3.21
3725 4508 2.380064 TGTTCTTGGGAGGCAAATGT 57.620 45.000 0.00 0.00 0.00 2.71
3726 4509 4.403432 ACATATGTTCTTGGGAGGCAAATG 59.597 41.667 1.41 0.00 0.00 2.32
3727 4510 4.613437 ACATATGTTCTTGGGAGGCAAAT 58.387 39.130 1.41 0.00 0.00 2.32
3728 4511 4.046286 ACATATGTTCTTGGGAGGCAAA 57.954 40.909 1.41 0.00 0.00 3.68
3729 4512 3.737559 ACATATGTTCTTGGGAGGCAA 57.262 42.857 1.41 0.00 0.00 4.52
3730 4513 3.737559 AACATATGTTCTTGGGAGGCA 57.262 42.857 15.47 0.00 31.64 4.75
3766 4549 3.484229 CGTAGTACTCGAACCACGTAAGG 60.484 52.174 0.00 0.00 46.39 2.69
3809 4592 3.170585 GCACGTACGTCTCGGTGC 61.171 66.667 19.94 14.21 0.00 5.01
3828 4612 4.559229 TCTCTGAGCGCCGCATCG 62.559 66.667 13.36 0.00 0.00 3.84
3842 4626 0.458716 GAGCCTGTAGTTGCCGTCTC 60.459 60.000 0.00 0.00 0.00 3.36
3843 4627 1.592223 GAGCCTGTAGTTGCCGTCT 59.408 57.895 0.00 0.00 0.00 4.18
3883 4667 1.133025 GAGGAACATTTGGGATGCGTG 59.867 52.381 0.00 0.00 0.00 5.34
3896 4680 1.812686 CTTCACCGGGTCGAGGAACA 61.813 60.000 6.32 0.00 0.00 3.18
3961 4745 7.696453 CGACCTGATTTTTGCTATAAATTTCGT 59.304 33.333 0.00 0.00 0.00 3.85
3963 4748 8.911247 ACGACCTGATTTTTGCTATAAATTTC 57.089 30.769 0.00 0.00 0.00 2.17
3991 4781 1.674441 CTTGTAGAGGTCGTCGGCATA 59.326 52.381 0.00 0.00 0.00 3.14
3992 4782 0.456221 CTTGTAGAGGTCGTCGGCAT 59.544 55.000 0.00 0.00 0.00 4.40
3993 4783 1.880894 CTTGTAGAGGTCGTCGGCA 59.119 57.895 0.00 0.00 0.00 5.69
3998 4788 0.320697 GGTTGGCTTGTAGAGGTCGT 59.679 55.000 0.00 0.00 0.00 4.34


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.