Multiple sequence alignment - TraesCS4B01G065300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G065300 chr4B 100.000 5616 0 0 1 5616 57869861 57864246 0.000000e+00 10371.0
1 TraesCS4B01G065300 chr4D 88.112 2532 170 49 618 3114 39414277 39411842 0.000000e+00 2887.0
2 TraesCS4B01G065300 chr4D 88.838 878 62 23 3943 4809 39410673 39409821 0.000000e+00 1046.0
3 TraesCS4B01G065300 chr4D 93.577 685 40 3 1 682 39414958 39414275 0.000000e+00 1018.0
4 TraesCS4B01G065300 chr4D 97.304 408 11 0 3527 3934 39411189 39410782 0.000000e+00 693.0
5 TraesCS4B01G065300 chr4D 91.323 461 19 9 5177 5616 39409680 39409220 1.340000e-170 610.0
6 TraesCS4B01G065300 chr4D 90.024 411 29 8 3073 3473 39411846 39411438 6.450000e-144 521.0
7 TraesCS4B01G065300 chr4D 93.750 48 0 2 3475 3522 39411321 39411277 1.010000e-07 69.4
8 TraesCS4B01G065300 chr4A 86.779 2307 159 47 837 3111 560901114 560903306 0.000000e+00 2436.0
9 TraesCS4B01G065300 chr4A 90.801 1348 76 23 3527 4861 560904121 560905433 0.000000e+00 1759.0
10 TraesCS4B01G065300 chr4A 93.446 534 35 0 1 534 560891504 560892037 0.000000e+00 793.0
11 TraesCS4B01G065300 chr4A 91.195 477 19 11 5154 5616 560905648 560906115 1.330000e-175 627.0
12 TraesCS4B01G065300 chr4A 90.524 401 31 5 3127 3522 560903466 560903864 1.790000e-144 523.0
13 TraesCS4B01G065300 chr4A 88.199 322 26 6 534 845 560896596 560896915 1.910000e-99 374.0
14 TraesCS4B01G065300 chr4A 93.373 166 10 1 5004 5169 560905448 560905612 1.560000e-60 244.0
15 TraesCS4B01G065300 chr4A 90.588 85 7 1 5004 5088 743571718 743571635 1.650000e-20 111.0
16 TraesCS4B01G065300 chr1D 74.262 610 110 37 147 735 17049548 17050131 4.410000e-51 213.0
17 TraesCS4B01G065300 chr1D 92.683 82 6 0 4809 4890 420603951 420604032 9.880000e-23 119.0
18 TraesCS4B01G065300 chr1D 89.157 83 8 1 5006 5088 366472970 366472889 9.950000e-18 102.0
19 TraesCS4B01G065300 chr3A 99.083 109 1 0 4898 5006 38393712 38393604 4.440000e-46 196.0
20 TraesCS4B01G065300 chr1B 98.198 111 2 0 4897 5007 582724248 582724138 1.600000e-45 195.0
21 TraesCS4B01G065300 chr1B 96.460 113 3 1 4895 5006 5934817 5934929 9.610000e-43 185.0
22 TraesCS4B01G065300 chr1B 88.506 87 9 1 5004 5090 73237566 73237651 2.770000e-18 104.0
23 TraesCS4B01G065300 chr1B 88.506 87 9 1 5004 5090 73282982 73283067 2.770000e-18 104.0
24 TraesCS4B01G065300 chr1B 88.506 87 9 1 5004 5090 73325902 73325987 2.770000e-18 104.0
25 TraesCS4B01G065300 chr6B 98.182 110 2 0 4898 5007 130967932 130967823 5.740000e-45 193.0
26 TraesCS4B01G065300 chr6B 97.345 113 3 0 4895 5007 156651551 156651439 5.740000e-45 193.0
27 TraesCS4B01G065300 chr7B 98.165 109 2 0 4900 5008 146961168 146961060 2.070000e-44 191.0
28 TraesCS4B01G065300 chr7B 94.215 121 3 4 4900 5018 450588137 450588019 1.240000e-41 182.0
29 TraesCS4B01G065300 chr5A 97.321 112 2 1 4900 5010 540061800 540061689 7.430000e-44 189.0
30 TraesCS4B01G065300 chr2B 92.126 127 8 2 4881 5007 236801726 236801850 1.610000e-40 178.0
31 TraesCS4B01G065300 chr1A 75.335 373 73 17 152 516 70922614 70922975 1.620000e-35 161.0
32 TraesCS4B01G065300 chr7D 90.426 94 9 0 4809 4902 395351921 395351828 2.120000e-24 124.0
33 TraesCS4B01G065300 chr7D 90.426 94 9 0 4809 4902 612277519 612277426 2.120000e-24 124.0
34 TraesCS4B01G065300 chr3D 90.426 94 9 0 4809 4902 253667268 253667361 2.120000e-24 124.0
35 TraesCS4B01G065300 chr3B 90.426 94 9 0 4809 4902 125894065 125894158 2.120000e-24 124.0
36 TraesCS4B01G065300 chr2D 90.426 94 9 0 4809 4902 31038016 31038109 2.120000e-24 124.0
37 TraesCS4B01G065300 chr2D 74.380 242 53 7 435 673 562302687 562302922 1.670000e-15 95.3
38 TraesCS4B01G065300 chr5B 90.323 93 9 0 4809 4901 527602007 527601915 7.640000e-24 122.0
39 TraesCS4B01G065300 chr6D 89.474 95 10 0 4809 4903 58530292 58530386 2.750000e-23 121.0
40 TraesCS4B01G065300 chr6D 89.286 84 6 3 5006 5088 24892750 24892831 9.950000e-18 102.0
41 TraesCS4B01G065300 chr7A 89.412 85 8 1 5004 5088 7072547 7072630 7.690000e-19 106.0
42 TraesCS4B01G065300 chrUn 88.506 87 9 1 5004 5090 431654658 431654743 2.770000e-18 104.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G065300 chr4B 57864246 57869861 5615 True 10371.000000 10371 100.000000 1 5616 1 chr4B.!!$R1 5615
1 TraesCS4B01G065300 chr4D 39409220 39414958 5738 True 977.771429 2887 91.846857 1 5616 7 chr4D.!!$R1 5615
2 TraesCS4B01G065300 chr4A 560901114 560906115 5001 False 1117.800000 2436 90.534400 837 5616 5 chr4A.!!$F3 4779
3 TraesCS4B01G065300 chr4A 560891504 560892037 533 False 793.000000 793 93.446000 1 534 1 chr4A.!!$F1 533
4 TraesCS4B01G065300 chr1D 17049548 17050131 583 False 213.000000 213 74.262000 147 735 1 chr1D.!!$F1 588

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
594 600 0.528684 CGACTCCGATGAAGAAGGGC 60.529 60.0 0.00 0.00 38.22 5.19 F
2058 2168 0.323360 TTTGTAGGCCATGCACTCCC 60.323 55.0 5.01 0.00 0.00 4.30 F
2122 2232 0.518195 TGTTCGTGTGCATGCATCTG 59.482 50.0 25.64 15.99 0.00 2.90 F
2125 2235 0.798159 TCGTGTGCATGCATCTGTTC 59.202 50.0 25.64 10.35 0.00 3.18 F
2708 2821 0.872021 GATACGGAGTGCGCAAGGAG 60.872 60.0 14.00 7.20 45.73 3.69 F
3934 4568 0.963962 AGCAACCTTGATGCCTGTTG 59.036 50.0 0.00 0.00 44.91 3.33 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2190 2301 0.032813 CCCTTCCATGATGGGCTTGT 60.033 55.0 12.26 0.0 39.59 3.16 R
3573 4207 0.110373 CAAACTGTCCTTTACGCCGC 60.110 55.0 0.00 0.0 0.00 6.53 R
3650 4284 1.260544 ATGATCATCCTCGCCATCGA 58.739 50.0 1.18 0.0 43.28 3.59 R
3856 4490 2.026822 ACAAGCATTACAGAGGGTCCTG 60.027 50.0 0.00 0.0 39.93 3.86 R
4152 4892 0.376152 GATTGACAGGATGCTGCACG 59.624 55.0 14.95 0.0 42.53 5.34 R
4994 5751 0.335361 ACATCAGGTACTCCCTCCGT 59.665 55.0 0.00 0.0 43.86 4.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
118 119 4.020543 GGCATATAGGATTCCTCGTCTCT 58.979 47.826 8.94 0.00 34.61 3.10
327 330 2.366972 GCCTTGCCCTCCTCCCTA 60.367 66.667 0.00 0.00 0.00 3.53
359 362 1.006571 GTCTTCGAAGGGCGTGTGA 60.007 57.895 24.37 0.11 41.80 3.58
371 374 1.548973 GCGTGTGAAGGTGTGTCTCG 61.549 60.000 0.00 0.00 0.00 4.04
383 386 0.665835 GTGTCTCGAGCGGATCTCAT 59.334 55.000 7.81 0.00 41.98 2.90
415 418 6.053005 GGTCGGTGTTTATCTTGAATGGATA 58.947 40.000 0.00 0.00 0.00 2.59
433 436 4.067896 GGATATGTGTGCATCCGATCTTT 58.932 43.478 0.00 0.00 36.58 2.52
450 453 5.401376 CGATCTTTGTTCGTCTGTGTTCTTA 59.599 40.000 0.00 0.00 32.08 2.10
518 522 2.731341 CGGTTGTTGTTTTGGTGCGTTA 60.731 45.455 0.00 0.00 0.00 3.18
545 549 3.289836 TGGGACCTTATATGACGACGAA 58.710 45.455 0.00 0.00 0.00 3.85
553 557 6.918569 ACCTTATATGACGACGAATTTCTGAG 59.081 38.462 0.00 0.00 0.00 3.35
588 594 1.993370 GTTTGTCCGACTCCGATGAAG 59.007 52.381 0.00 0.00 38.22 3.02
594 600 0.528684 CGACTCCGATGAAGAAGGGC 60.529 60.000 0.00 0.00 38.22 5.19
620 627 1.359459 GGTGGCACGTCTTCGATTCC 61.359 60.000 12.17 0.00 40.62 3.01
634 641 2.166459 TCGATTCCCTCTAGTGCTTGTG 59.834 50.000 0.00 0.00 0.00 3.33
635 642 2.093973 CGATTCCCTCTAGTGCTTGTGT 60.094 50.000 0.00 0.00 0.00 3.72
642 649 1.060713 CTAGTGCTTGTGTTCGTCGG 58.939 55.000 0.00 0.00 0.00 4.79
695 764 3.865011 TTGCTTCTTGTGTTCTTTGCA 57.135 38.095 0.00 0.00 0.00 4.08
699 768 2.849880 TCTTGTGTTCTTTGCACTGC 57.150 45.000 0.00 0.00 37.70 4.40
703 772 5.304778 TCTTGTGTTCTTTGCACTGCTATA 58.695 37.500 1.98 0.00 37.70 1.31
770 839 2.202878 ATGATGGCGTCGAACCCG 60.203 61.111 0.00 0.00 37.07 5.28
789 858 2.047274 CCTCACGTCGCCACCATT 60.047 61.111 0.00 0.00 0.00 3.16
800 869 1.202463 CGCCACCATTGTCAAACCAAA 60.202 47.619 0.00 0.00 0.00 3.28
810 879 6.293955 CCATTGTCAAACCAAAGAGACGTTAT 60.294 38.462 0.00 0.00 33.83 1.89
1311 1396 2.560504 TGGTGGATTTCGATCATTCCG 58.439 47.619 0.00 0.00 0.00 4.30
1345 1430 2.180017 CTGCAGCCGAATTGCACC 59.820 61.111 0.00 0.00 45.89 5.01
1359 1444 1.485124 TGCACCGTCATGGAGATAGT 58.515 50.000 0.00 0.00 42.00 2.12
1371 1456 5.366768 TCATGGAGATAGTTCCCTCGATTTT 59.633 40.000 0.00 0.00 36.35 1.82
1405 1490 1.139989 CTGTCGAATTGCACTGTCGT 58.860 50.000 11.37 0.00 36.21 4.34
1459 1555 7.505585 TGAACTTTCAGAGGAATTGGTTATGTT 59.494 33.333 0.00 0.00 31.93 2.71
1462 1558 8.383175 ACTTTCAGAGGAATTGGTTATGTTCTA 58.617 33.333 0.00 0.00 31.93 2.10
1468 1564 8.506083 AGAGGAATTGGTTATGTTCTATGGATT 58.494 33.333 0.00 0.00 0.00 3.01
1487 1583 7.421087 TGGATTGATTGAATATTTGGAGCAA 57.579 32.000 0.00 0.00 0.00 3.91
1488 1584 8.025270 TGGATTGATTGAATATTTGGAGCAAT 57.975 30.769 8.78 8.78 32.36 3.56
1582 1679 3.885901 GAGCTTTAGGAAAGGGGCTAATG 59.114 47.826 0.00 0.00 38.93 1.90
1595 1692 6.775594 AGGGGCTAATGTTTTCTTACATTC 57.224 37.500 5.36 0.00 43.39 2.67
1657 1757 2.224079 TCGAGTTTGCTGTGCTTGATTC 59.776 45.455 0.00 0.00 0.00 2.52
1674 1774 6.803807 GCTTGATTCCTAAAGTGTGTCATTTC 59.196 38.462 0.00 0.00 0.00 2.17
1675 1775 7.308830 GCTTGATTCCTAAAGTGTGTCATTTCT 60.309 37.037 0.00 0.00 0.00 2.52
1678 1778 8.567948 TGATTCCTAAAGTGTGTCATTTCTTTC 58.432 33.333 0.00 0.00 33.22 2.62
1679 1779 7.873719 TTCCTAAAGTGTGTCATTTCTTTCA 57.126 32.000 0.00 0.00 33.22 2.69
1680 1780 7.496529 TCCTAAAGTGTGTCATTTCTTTCAG 57.503 36.000 0.00 0.00 33.22 3.02
1681 1781 7.279615 TCCTAAAGTGTGTCATTTCTTTCAGA 58.720 34.615 0.00 0.00 33.22 3.27
1682 1782 7.226720 TCCTAAAGTGTGTCATTTCTTTCAGAC 59.773 37.037 0.00 0.00 33.22 3.51
1684 1784 4.442706 AGTGTGTCATTTCTTTCAGACGT 58.557 39.130 0.00 0.00 33.83 4.34
1688 1797 6.526674 GTGTGTCATTTCTTTCAGACGTTTTT 59.473 34.615 0.00 0.00 33.83 1.94
1732 1841 5.162000 GCATGGTTGCTGAATAGTAGAAC 57.838 43.478 0.00 0.00 45.77 3.01
1733 1842 4.635765 GCATGGTTGCTGAATAGTAGAACA 59.364 41.667 0.00 0.00 45.77 3.18
1742 1851 5.164012 GCTGAATAGTAGAACATATGCTGCG 60.164 44.000 1.58 0.00 0.00 5.18
1746 1855 4.862902 AGTAGAACATATGCTGCGAGAT 57.137 40.909 1.58 0.00 0.00 2.75
1752 1861 1.878088 CATATGCTGCGAGATTTGGCT 59.122 47.619 0.00 0.00 0.00 4.75
1754 1863 2.267174 ATGCTGCGAGATTTGGCTAT 57.733 45.000 0.00 0.00 0.00 2.97
1766 1875 7.293745 CGAGATTTGGCTATGTATGATTGTTC 58.706 38.462 0.00 0.00 0.00 3.18
1771 1880 7.936496 TTGGCTATGTATGATTGTTCTGAAA 57.064 32.000 0.00 0.00 0.00 2.69
1818 1928 7.665559 AGATTATCAAAGCTTGGTTGTCTTACA 59.334 33.333 0.00 0.00 0.00 2.41
1831 1941 5.697633 GGTTGTCTTACATAACCGAAACTGA 59.302 40.000 0.00 0.00 36.61 3.41
1850 1960 1.808945 GACATCCCTGTTCTGTTGCTG 59.191 52.381 0.00 0.00 35.14 4.41
1866 1976 4.095782 TGTTGCTGTCCTTGTACTGTTTTC 59.904 41.667 0.00 0.00 0.00 2.29
1889 1999 9.816354 TTTCAAATTTCTTACCCTTTTCTCTTG 57.184 29.630 0.00 0.00 0.00 3.02
1900 2010 4.023365 CCCTTTTCTCTTGTTCTGCTTGAG 60.023 45.833 0.00 0.00 0.00 3.02
1906 2016 6.605471 TCTCTTGTTCTGCTTGAGGTTATA 57.395 37.500 0.00 0.00 0.00 0.98
1931 2041 1.340088 TTGCATTTGTGTGGCCATCT 58.660 45.000 9.72 0.00 0.00 2.90
1964 2074 1.544724 TTTGCAGGTGCCATAGTTCC 58.455 50.000 0.00 0.00 41.18 3.62
1976 2086 3.118665 GCCATAGTTCCGTGTTAGGGTAA 60.119 47.826 0.00 0.00 0.00 2.85
1993 2103 4.010349 GGGTAAGGTTCTTGATGGTTCTG 58.990 47.826 0.00 0.00 0.00 3.02
1994 2104 4.010349 GGTAAGGTTCTTGATGGTTCTGG 58.990 47.826 0.00 0.00 0.00 3.86
1995 2105 2.887151 AGGTTCTTGATGGTTCTGGG 57.113 50.000 0.00 0.00 0.00 4.45
1996 2106 2.348472 AGGTTCTTGATGGTTCTGGGA 58.652 47.619 0.00 0.00 0.00 4.37
1997 2107 2.040412 AGGTTCTTGATGGTTCTGGGAC 59.960 50.000 0.00 0.00 0.00 4.46
1998 2108 2.224769 GGTTCTTGATGGTTCTGGGACA 60.225 50.000 0.00 0.00 0.00 4.02
1999 2109 2.814336 GTTCTTGATGGTTCTGGGACAC 59.186 50.000 0.00 0.00 0.00 3.67
2000 2110 2.054021 TCTTGATGGTTCTGGGACACA 58.946 47.619 0.00 0.00 0.00 3.72
2009 2119 3.713902 CTGGGACACAGTTCTTGCT 57.286 52.632 0.00 0.00 42.42 3.91
2013 2123 1.338020 GGGACACAGTTCTTGCTTTGG 59.662 52.381 0.00 0.00 0.00 3.28
2033 2143 8.059966 GCTTTGGCAAAAGATTCACCATCTTAT 61.060 37.037 18.12 0.00 44.81 1.73
2058 2168 0.323360 TTTGTAGGCCATGCACTCCC 60.323 55.000 5.01 0.00 0.00 4.30
2072 2182 7.899739 CATGCACTCCCATGTGGTTATACCA 62.900 48.000 0.00 0.00 38.86 3.25
2087 2197 7.484035 GGTTATACCAAATTGCACAAAAACA 57.516 32.000 0.00 0.00 38.42 2.83
2118 2228 2.091852 TCTATGTTCGTGTGCATGCA 57.908 45.000 18.46 18.46 0.00 3.96
2120 2230 2.609002 TCTATGTTCGTGTGCATGCATC 59.391 45.455 25.64 18.35 0.00 3.91
2122 2232 0.518195 TGTTCGTGTGCATGCATCTG 59.482 50.000 25.64 15.99 0.00 2.90
2125 2235 0.798159 TCGTGTGCATGCATCTGTTC 59.202 50.000 25.64 10.35 0.00 3.18
2128 2238 2.416202 CGTGTGCATGCATCTGTTCTTA 59.584 45.455 25.64 0.00 0.00 2.10
2131 2241 5.404946 GTGTGCATGCATCTGTTCTTATTT 58.595 37.500 25.64 0.00 0.00 1.40
2163 2273 6.908870 AAACACAAAAATCTTTGAGCCTTC 57.091 33.333 0.00 0.00 44.03 3.46
2168 2278 3.498927 AAATCTTTGAGCCTTCATGCG 57.501 42.857 0.00 0.00 36.02 4.73
2171 2281 2.229792 TCTTTGAGCCTTCATGCGTTT 58.770 42.857 0.00 0.00 36.02 3.60
2178 2288 1.400494 GCCTTCATGCGTTTACCGAAT 59.600 47.619 0.00 0.00 39.56 3.34
2190 2301 7.201835 TGCGTTTACCGAATGATAGTTATGTA 58.798 34.615 0.00 0.00 39.56 2.29
2197 2308 5.408604 CCGAATGATAGTTATGTACAAGCCC 59.591 44.000 0.00 0.00 0.00 5.19
2198 2309 5.989168 CGAATGATAGTTATGTACAAGCCCA 59.011 40.000 0.00 0.00 0.00 5.36
2199 2310 6.650807 CGAATGATAGTTATGTACAAGCCCAT 59.349 38.462 0.00 0.00 0.00 4.00
2234 2345 4.664150 ACACCCCAAAATTACAACACTG 57.336 40.909 0.00 0.00 0.00 3.66
2319 2431 4.728534 TGCAACCATATTACGTTTCAAGC 58.271 39.130 0.00 0.00 0.00 4.01
2325 2437 5.006358 ACCATATTACGTTTCAAGCGTGATC 59.994 40.000 9.83 0.00 42.87 2.92
2339 2451 1.935873 CGTGATCGCATGAACCAATCT 59.064 47.619 7.12 0.00 32.63 2.40
2341 2453 2.938451 GTGATCGCATGAACCAATCTCA 59.062 45.455 0.16 0.00 0.00 3.27
2342 2454 2.938451 TGATCGCATGAACCAATCTCAC 59.062 45.455 0.00 0.00 0.00 3.51
2344 2456 3.885724 TCGCATGAACCAATCTCACTA 57.114 42.857 0.00 0.00 0.00 2.74
2348 2460 4.571984 CGCATGAACCAATCTCACTATTGA 59.428 41.667 0.00 0.00 38.84 2.57
2380 2492 4.552767 CGTTCAAGTGTTTCTGGTGATCAC 60.553 45.833 17.91 17.91 0.00 3.06
2381 2493 4.149511 TCAAGTGTTTCTGGTGATCACA 57.850 40.909 26.47 12.17 33.30 3.58
2382 2494 4.717877 TCAAGTGTTTCTGGTGATCACAT 58.282 39.130 26.47 0.00 33.30 3.21
2383 2495 4.516321 TCAAGTGTTTCTGGTGATCACATG 59.484 41.667 26.47 17.60 33.30 3.21
2384 2496 4.090761 AGTGTTTCTGGTGATCACATGT 57.909 40.909 26.47 0.00 33.30 3.21
2400 2512 5.530712 TCACATGTTTCATGGTCATTTGTG 58.469 37.500 13.15 1.43 0.00 3.33
2405 2517 6.402456 TGTTTCATGGTCATTTGTGATTGA 57.598 33.333 0.00 0.00 0.00 2.57
2410 2522 9.642327 TTTCATGGTCATTTGTGATTGATTTAG 57.358 29.630 0.00 0.00 0.00 1.85
2520 2632 1.239968 GCTGGGCCTACTGCATATGC 61.240 60.000 21.09 21.09 43.89 3.14
2532 2644 4.588899 ACTGCATATGCTGAAAAGGTACA 58.411 39.130 33.30 8.42 41.71 2.90
2551 2663 5.982516 GGTACAATCAGCTGTAGAATCTCTG 59.017 44.000 14.67 0.00 32.49 3.35
2570 2682 4.203226 TCTGCAACAAGGTTGTGTGAATA 58.797 39.130 10.44 0.00 41.31 1.75
2574 2686 4.976116 GCAACAAGGTTGTGTGAATACTTC 59.024 41.667 10.44 0.00 41.31 3.01
2583 2695 7.657761 AGGTTGTGTGAATACTTCTAGTTTCTG 59.342 37.037 0.00 0.00 0.00 3.02
2648 2761 3.832490 GGGTTGCTTCCTTAATGAGGTTT 59.168 43.478 0.00 0.00 46.39 3.27
2651 2764 2.747446 TGCTTCCTTAATGAGGTTTCGC 59.253 45.455 0.00 0.00 46.39 4.70
2708 2821 0.872021 GATACGGAGTGCGCAAGGAG 60.872 60.000 14.00 7.20 45.73 3.69
2776 2890 4.204573 GTGCTTCGTAGAGTTATTAGCGTG 59.795 45.833 0.00 0.00 38.43 5.34
2777 2891 4.095334 TGCTTCGTAGAGTTATTAGCGTGA 59.905 41.667 0.00 0.00 38.43 4.35
2778 2892 5.213675 GCTTCGTAGAGTTATTAGCGTGAT 58.786 41.667 0.00 0.00 38.43 3.06
2779 2893 5.115773 GCTTCGTAGAGTTATTAGCGTGATG 59.884 44.000 0.00 0.00 38.43 3.07
2780 2894 5.996669 TCGTAGAGTTATTAGCGTGATGA 57.003 39.130 0.00 0.00 0.00 2.92
2781 2895 6.367686 TCGTAGAGTTATTAGCGTGATGAA 57.632 37.500 0.00 0.00 0.00 2.57
2782 2896 6.967135 TCGTAGAGTTATTAGCGTGATGAAT 58.033 36.000 0.00 0.00 0.00 2.57
2792 2906 4.970662 AGCGTGATGAATACAAATGCTT 57.029 36.364 0.00 0.00 36.37 3.91
2794 2908 5.097529 AGCGTGATGAATACAAATGCTTTG 58.902 37.500 6.98 6.98 45.95 2.77
2880 2994 6.432162 GGATATATTCCAGCTTTCTGCATTCA 59.568 38.462 0.00 0.00 44.74 2.57
2941 3055 7.336679 CACATGTTTAGACCACATTAATGAGGA 59.663 37.037 31.14 12.13 40.43 3.71
2943 3057 7.864108 TGTTTAGACCACATTAATGAGGATG 57.136 36.000 31.14 15.62 40.43 3.51
2945 3059 8.544622 TGTTTAGACCACATTAATGAGGATGTA 58.455 33.333 31.14 18.36 40.43 2.29
2946 3060 8.827677 GTTTAGACCACATTAATGAGGATGTAC 58.172 37.037 31.14 19.30 40.43 2.90
2947 3061 6.814954 AGACCACATTAATGAGGATGTACT 57.185 37.500 31.14 19.49 40.43 2.73
2949 3063 5.930135 ACCACATTAATGAGGATGTACTCC 58.070 41.667 31.14 0.00 45.33 3.85
2960 3074 3.609853 GGATGTACTCCATGTTTCTGCA 58.390 45.455 6.51 0.00 44.26 4.41
2961 3075 4.202441 GGATGTACTCCATGTTTCTGCAT 58.798 43.478 6.51 0.00 44.26 3.96
2962 3076 4.641989 GGATGTACTCCATGTTTCTGCATT 59.358 41.667 6.51 0.00 44.26 3.56
2963 3077 5.220931 GGATGTACTCCATGTTTCTGCATTC 60.221 44.000 6.51 0.00 44.26 2.67
2964 3078 4.009675 TGTACTCCATGTTTCTGCATTCC 58.990 43.478 0.00 0.00 0.00 3.01
2965 3079 2.450476 ACTCCATGTTTCTGCATTCCC 58.550 47.619 0.00 0.00 0.00 3.97
2966 3080 2.225091 ACTCCATGTTTCTGCATTCCCA 60.225 45.455 0.00 0.00 0.00 4.37
2967 3081 2.827322 CTCCATGTTTCTGCATTCCCAA 59.173 45.455 0.00 0.00 0.00 4.12
2968 3082 3.237746 TCCATGTTTCTGCATTCCCAAA 58.762 40.909 0.00 0.00 0.00 3.28
2971 3085 3.959535 TGTTTCTGCATTCCCAAATCC 57.040 42.857 0.00 0.00 0.00 3.01
3028 3143 7.503902 AGAATTTTACCTAATTCATCAGCCTCC 59.496 37.037 10.61 0.00 43.67 4.30
3048 3163 3.012518 CCTTGGTTTGATGTCTAGCCTG 58.987 50.000 0.05 0.00 0.00 4.85
3065 3180 2.159282 GCCTGCCAATCTGAGACAATTG 60.159 50.000 3.24 3.24 33.57 2.32
3067 3182 3.508793 CCTGCCAATCTGAGACAATTGTT 59.491 43.478 13.36 2.74 32.20 2.83
3068 3183 4.482386 CTGCCAATCTGAGACAATTGTTG 58.518 43.478 13.36 4.89 32.20 3.33
3069 3184 3.256383 TGCCAATCTGAGACAATTGTTGG 59.744 43.478 13.36 14.82 38.08 3.77
3070 3185 3.256631 GCCAATCTGAGACAATTGTTGGT 59.743 43.478 19.39 6.85 37.52 3.67
3071 3186 4.262164 GCCAATCTGAGACAATTGTTGGTT 60.262 41.667 19.39 8.89 37.52 3.67
3086 3203 5.682943 TGTTGGTTTTGAATAGTTCCTCG 57.317 39.130 0.00 0.00 0.00 4.63
3088 3205 5.823570 TGTTGGTTTTGAATAGTTCCTCGAA 59.176 36.000 0.00 0.00 0.00 3.71
3099 3216 1.804748 GTTCCTCGAACACCAATGTCC 59.195 52.381 0.00 0.00 41.62 4.02
3111 3228 2.693074 ACCAATGTCCGAGCAAAAGTTT 59.307 40.909 0.00 0.00 0.00 2.66
3114 3231 4.917415 CCAATGTCCGAGCAAAAGTTTAAG 59.083 41.667 0.00 0.00 0.00 1.85
3117 3275 7.305474 CAATGTCCGAGCAAAAGTTTAAGTAT 58.695 34.615 0.00 0.00 0.00 2.12
3143 3404 6.361433 AACATGTAATGGTCCGGAAATATGA 58.639 36.000 5.23 0.00 44.29 2.15
3168 3429 9.727627 GAATCATGGAATGTTAATTCTGAGAAC 57.272 33.333 0.00 0.00 46.80 3.01
3230 3494 6.212791 AGTCTGGCTCTGGTACATTTTACTAA 59.787 38.462 0.00 0.00 38.20 2.24
3231 3495 6.877322 GTCTGGCTCTGGTACATTTTACTAAA 59.123 38.462 0.00 0.00 38.20 1.85
3232 3496 7.553044 GTCTGGCTCTGGTACATTTTACTAAAT 59.447 37.037 0.00 0.00 38.20 1.40
3281 3547 2.996631 AGTCCTCATAAGCAAAGGCAG 58.003 47.619 0.00 0.00 44.61 4.85
3300 3566 7.232118 AGGCAGTTTTTATAGCACTTCATTT 57.768 32.000 0.00 0.00 0.00 2.32
3315 3581 6.922957 GCACTTCATTTCAGTTGGTTATCAAA 59.077 34.615 0.00 0.00 37.08 2.69
3342 3608 6.831353 TCTTGATGTTTGTTGGTTTAGGAAGA 59.169 34.615 0.00 0.00 0.00 2.87
3359 3625 3.126858 GGAAGAAATATCACGTTGCTGCA 59.873 43.478 0.00 0.00 0.00 4.41
3383 3649 7.255035 GCATACATGAGTCAGCACTGAATAAAT 60.255 37.037 0.00 0.00 41.85 1.40
3386 3652 8.743085 ACATGAGTCAGCACTGAATAAATAAT 57.257 30.769 0.00 0.00 41.85 1.28
3573 4207 2.245159 TTATCGCTGGCAGGATGAAG 57.755 50.000 17.64 0.00 39.69 3.02
3650 4284 3.302375 CAGCTTGTGTCTCTGCAGT 57.698 52.632 14.67 0.00 0.00 4.40
3716 4350 2.092681 GTGATGACATGTGTACGTGCAG 59.907 50.000 6.58 0.00 36.36 4.41
3904 4538 4.269183 TGATGTGGGCAAATAAGGTACTG 58.731 43.478 0.00 0.00 40.86 2.74
3934 4568 0.963962 AGCAACCTTGATGCCTGTTG 59.036 50.000 0.00 0.00 44.91 3.33
3940 4680 2.362077 ACCTTGATGCCTGTTGTGTTTC 59.638 45.455 0.00 0.00 0.00 2.78
3941 4681 2.288395 CCTTGATGCCTGTTGTGTTTCC 60.288 50.000 0.00 0.00 0.00 3.13
3943 4683 2.665165 TGATGCCTGTTGTGTTTCCTT 58.335 42.857 0.00 0.00 0.00 3.36
3944 4684 3.030291 TGATGCCTGTTGTGTTTCCTTT 58.970 40.909 0.00 0.00 0.00 3.11
3945 4685 3.068024 TGATGCCTGTTGTGTTTCCTTTC 59.932 43.478 0.00 0.00 0.00 2.62
3946 4686 2.733956 TGCCTGTTGTGTTTCCTTTCT 58.266 42.857 0.00 0.00 0.00 2.52
3947 4687 3.096092 TGCCTGTTGTGTTTCCTTTCTT 58.904 40.909 0.00 0.00 0.00 2.52
3948 4688 3.513515 TGCCTGTTGTGTTTCCTTTCTTT 59.486 39.130 0.00 0.00 0.00 2.52
3949 4689 4.112634 GCCTGTTGTGTTTCCTTTCTTTC 58.887 43.478 0.00 0.00 0.00 2.62
3950 4690 4.381505 GCCTGTTGTGTTTCCTTTCTTTCA 60.382 41.667 0.00 0.00 0.00 2.69
3951 4691 5.719173 CCTGTTGTGTTTCCTTTCTTTCAA 58.281 37.500 0.00 0.00 0.00 2.69
3952 4692 5.807011 CCTGTTGTGTTTCCTTTCTTTCAAG 59.193 40.000 0.00 0.00 0.00 3.02
3953 4693 5.167845 TGTTGTGTTTCCTTTCTTTCAAGC 58.832 37.500 0.00 0.00 0.00 4.01
3954 4694 4.027572 TGTGTTTCCTTTCTTTCAAGCG 57.972 40.909 0.00 0.00 0.00 4.68
3955 4695 3.442273 TGTGTTTCCTTTCTTTCAAGCGT 59.558 39.130 0.00 0.00 0.00 5.07
3956 4696 3.791353 GTGTTTCCTTTCTTTCAAGCGTG 59.209 43.478 0.00 0.00 0.00 5.34
3957 4697 3.692101 TGTTTCCTTTCTTTCAAGCGTGA 59.308 39.130 0.00 0.00 0.00 4.35
3958 4698 4.156922 TGTTTCCTTTCTTTCAAGCGTGAA 59.843 37.500 11.22 11.22 42.12 3.18
3996 4736 4.959596 CAGCATGCTTGTGAATCTAACT 57.040 40.909 19.98 0.00 0.00 2.24
3998 4738 6.426980 CAGCATGCTTGTGAATCTAACTAA 57.573 37.500 19.98 0.00 0.00 2.24
3999 4739 6.253746 CAGCATGCTTGTGAATCTAACTAAC 58.746 40.000 19.98 0.00 0.00 2.34
4000 4740 6.093219 CAGCATGCTTGTGAATCTAACTAACT 59.907 38.462 19.98 0.00 0.00 2.24
4007 4747 9.989869 GCTTGTGAATCTAACTAACTAAATTCC 57.010 33.333 0.00 0.00 0.00 3.01
4039 4779 6.724893 AACTGGTTTACAAATTGCCTAACT 57.275 33.333 0.00 0.00 0.00 2.24
4054 4794 4.653801 TGCCTAACTGATTACCTGCTGATA 59.346 41.667 0.00 0.00 0.00 2.15
4140 4880 4.041444 ACTCTGAGAAGTCCTTTGAATGCT 59.959 41.667 12.44 0.00 0.00 3.79
4152 4892 3.959535 TTGAATGCTCCCAAAATGACC 57.040 42.857 0.00 0.00 0.00 4.02
4164 4904 0.322816 AAATGACCGTGCAGCATCCT 60.323 50.000 0.00 0.00 0.00 3.24
4166 4906 2.046892 GACCGTGCAGCATCCTGT 60.047 61.111 0.00 0.00 41.26 4.00
4172 4912 0.737219 GTGCAGCATCCTGTCAATCC 59.263 55.000 0.00 0.00 41.26 3.01
4192 4932 2.350498 CCGAGTAAAATGGTGCGTTAGG 59.650 50.000 0.00 0.00 0.00 2.69
4196 4936 4.000988 AGTAAAATGGTGCGTTAGGTCTG 58.999 43.478 0.00 0.00 0.00 3.51
4208 4948 6.019801 GTGCGTTAGGTCTGTGATATAACTTG 60.020 42.308 0.00 0.00 0.00 3.16
4216 4956 8.950210 AGGTCTGTGATATAACTTGTTTGATTG 58.050 33.333 0.00 0.00 0.00 2.67
4299 5039 1.000233 GCAATTGTGTGTGCTGAGCG 61.000 55.000 7.40 0.00 37.78 5.03
4310 5050 1.787155 GTGCTGAGCGTAATCATACCG 59.213 52.381 0.00 0.00 0.00 4.02
4312 5052 1.868109 GCTGAGCGTAATCATACCGCA 60.868 52.381 6.03 0.00 35.46 5.69
4324 5064 3.884895 TCATACCGCAGTCAAAATGGAT 58.115 40.909 0.00 0.00 0.00 3.41
4329 5069 2.749076 CCGCAGTCAAAATGGATTCTGA 59.251 45.455 0.00 0.00 0.00 3.27
4340 5080 7.394077 TCAAAATGGATTCTGAGATGTAAGCAA 59.606 33.333 0.00 0.00 0.00 3.91
4341 5081 6.939132 AATGGATTCTGAGATGTAAGCAAG 57.061 37.500 0.00 0.00 0.00 4.01
4348 5097 4.019860 TCTGAGATGTAAGCAAGCCTTCTT 60.020 41.667 0.00 0.00 34.95 2.52
4365 5114 5.668471 CCTTCTTTACTGCATCTCAGATCA 58.332 41.667 0.00 0.00 45.72 2.92
4372 5121 3.514706 ACTGCATCTCAGATCACTGTCTT 59.485 43.478 0.00 0.00 45.72 3.01
4373 5122 4.708909 ACTGCATCTCAGATCACTGTCTTA 59.291 41.667 0.00 0.00 45.72 2.10
4374 5123 5.163530 ACTGCATCTCAGATCACTGTCTTAG 60.164 44.000 0.00 0.00 45.72 2.18
4375 5124 4.050553 GCATCTCAGATCACTGTCTTAGC 58.949 47.826 0.00 0.00 43.81 3.09
4376 5125 4.441217 GCATCTCAGATCACTGTCTTAGCA 60.441 45.833 0.00 0.00 43.81 3.49
4377 5126 4.979943 TCTCAGATCACTGTCTTAGCAG 57.020 45.455 0.00 2.94 43.81 4.24
4378 5127 3.130164 TCTCAGATCACTGTCTTAGCAGC 59.870 47.826 0.00 0.00 43.81 5.25
4379 5128 3.095332 TCAGATCACTGTCTTAGCAGCT 58.905 45.455 0.00 0.00 43.81 4.24
4380 5129 4.273318 TCAGATCACTGTCTTAGCAGCTA 58.727 43.478 0.00 0.00 43.81 3.32
4381 5130 4.337836 TCAGATCACTGTCTTAGCAGCTAG 59.662 45.833 1.49 0.00 43.81 3.42
4382 5131 3.636300 AGATCACTGTCTTAGCAGCTAGG 59.364 47.826 5.15 5.15 39.96 3.02
4383 5132 3.087370 TCACTGTCTTAGCAGCTAGGA 57.913 47.619 10.16 10.16 39.96 2.94
4384 5133 3.020274 TCACTGTCTTAGCAGCTAGGAG 58.980 50.000 14.37 6.85 39.96 3.69
4387 5136 4.582656 CACTGTCTTAGCAGCTAGGAGTAT 59.417 45.833 14.37 0.60 39.96 2.12
4389 5138 5.766174 ACTGTCTTAGCAGCTAGGAGTATAC 59.234 44.000 14.37 4.22 39.96 1.47
4390 5139 5.942961 TGTCTTAGCAGCTAGGAGTATACT 58.057 41.667 14.37 4.68 0.00 2.12
4391 5140 7.075851 TGTCTTAGCAGCTAGGAGTATACTA 57.924 40.000 14.37 0.00 0.00 1.82
4392 5141 7.691213 TGTCTTAGCAGCTAGGAGTATACTAT 58.309 38.462 14.37 0.17 0.00 2.12
4393 5142 8.164733 TGTCTTAGCAGCTAGGAGTATACTATT 58.835 37.037 14.37 0.00 0.00 1.73
4394 5143 9.016438 GTCTTAGCAGCTAGGAGTATACTATTT 57.984 37.037 14.37 0.00 0.00 1.40
4395 5144 9.589461 TCTTAGCAGCTAGGAGTATACTATTTT 57.411 33.333 10.16 0.00 0.00 1.82
4398 5147 8.707796 AGCAGCTAGGAGTATACTATTTTACA 57.292 34.615 5.09 0.00 0.00 2.41
4399 5148 9.144298 AGCAGCTAGGAGTATACTATTTTACAA 57.856 33.333 5.09 0.00 0.00 2.41
4400 5149 9.413048 GCAGCTAGGAGTATACTATTTTACAAG 57.587 37.037 5.09 0.00 0.00 3.16
4401 5150 9.915629 CAGCTAGGAGTATACTATTTTACAAGG 57.084 37.037 5.09 0.00 0.00 3.61
4402 5151 9.657728 AGCTAGGAGTATACTATTTTACAAGGT 57.342 33.333 5.09 0.00 0.00 3.50
4403 5152 9.911138 GCTAGGAGTATACTATTTTACAAGGTC 57.089 37.037 5.09 0.00 0.00 3.85
4406 5155 9.145442 AGGAGTATACTATTTTACAAGGTCCTC 57.855 37.037 5.09 0.00 0.00 3.71
4407 5156 8.921205 GGAGTATACTATTTTACAAGGTCCTCA 58.079 37.037 5.09 0.00 0.00 3.86
4478 5227 5.139435 TCTCTCAGAACACCAACTATGTG 57.861 43.478 0.00 0.00 39.63 3.21
4501 5250 7.283127 TGTGCCATTATCTAACTTTCTTGATCC 59.717 37.037 0.00 0.00 0.00 3.36
4509 5258 2.529632 ACTTTCTTGATCCTTTGCCCC 58.470 47.619 0.00 0.00 0.00 5.80
4542 5291 4.695928 GTGTGGGGATTCTACTTTCTTGAC 59.304 45.833 0.00 0.00 0.00 3.18
4582 5331 2.966309 GAAACCAGAACTGCGCCCG 61.966 63.158 4.18 0.00 0.00 6.13
4599 5348 3.112709 GGCGACTGAAGGCGACAC 61.113 66.667 10.36 0.00 35.15 3.67
4697 5447 8.293867 TGATGTATAAGGCAACAAAACTAACAC 58.706 33.333 0.00 0.00 41.41 3.32
4739 5489 6.749772 GCCACATTTATCCCCTCCATGTATTA 60.750 42.308 0.00 0.00 0.00 0.98
4740 5490 7.413446 CCACATTTATCCCCTCCATGTATTAT 58.587 38.462 0.00 0.00 0.00 1.28
4741 5491 8.556589 CCACATTTATCCCCTCCATGTATTATA 58.443 37.037 0.00 0.00 0.00 0.98
4833 5590 0.512952 GTGTTGGCTGCTTGTCGTAG 59.487 55.000 0.00 0.00 0.00 3.51
4840 5597 2.607187 GCTGCTTGTCGTAGCTCTTTA 58.393 47.619 0.00 0.00 46.40 1.85
4844 5601 2.924290 GCTTGTCGTAGCTCTTTACTGG 59.076 50.000 0.00 0.00 38.15 4.00
4845 5602 3.614390 GCTTGTCGTAGCTCTTTACTGGT 60.614 47.826 0.00 0.00 38.15 4.00
4846 5603 4.557205 CTTGTCGTAGCTCTTTACTGGTT 58.443 43.478 0.00 0.00 0.00 3.67
4847 5604 4.170292 TGTCGTAGCTCTTTACTGGTTC 57.830 45.455 0.00 0.00 0.00 3.62
4848 5605 3.825014 TGTCGTAGCTCTTTACTGGTTCT 59.175 43.478 0.00 0.00 0.00 3.01
4849 5606 4.082895 TGTCGTAGCTCTTTACTGGTTCTC 60.083 45.833 0.00 0.00 0.00 2.87
4850 5607 3.442977 TCGTAGCTCTTTACTGGTTCTCC 59.557 47.826 0.00 0.00 0.00 3.71
4851 5608 3.444388 CGTAGCTCTTTACTGGTTCTCCT 59.556 47.826 0.00 0.00 34.23 3.69
4852 5609 4.082136 CGTAGCTCTTTACTGGTTCTCCTT 60.082 45.833 0.00 0.00 34.23 3.36
4853 5610 5.125097 CGTAGCTCTTTACTGGTTCTCCTTA 59.875 44.000 0.00 0.00 34.23 2.69
4854 5611 6.183360 CGTAGCTCTTTACTGGTTCTCCTTAT 60.183 42.308 0.00 0.00 34.23 1.73
4855 5612 5.983540 AGCTCTTTACTGGTTCTCCTTATG 58.016 41.667 0.00 0.00 34.23 1.90
4856 5613 5.485708 AGCTCTTTACTGGTTCTCCTTATGT 59.514 40.000 0.00 0.00 34.23 2.29
4857 5614 6.013293 AGCTCTTTACTGGTTCTCCTTATGTT 60.013 38.462 0.00 0.00 34.23 2.71
4858 5615 6.092807 GCTCTTTACTGGTTCTCCTTATGTTG 59.907 42.308 0.00 0.00 34.23 3.33
4859 5616 7.074653 TCTTTACTGGTTCTCCTTATGTTGT 57.925 36.000 0.00 0.00 34.23 3.32
4860 5617 7.514721 TCTTTACTGGTTCTCCTTATGTTGTT 58.485 34.615 0.00 0.00 34.23 2.83
4861 5618 7.660208 TCTTTACTGGTTCTCCTTATGTTGTTC 59.340 37.037 0.00 0.00 34.23 3.18
4862 5619 4.652822 ACTGGTTCTCCTTATGTTGTTCC 58.347 43.478 0.00 0.00 34.23 3.62
4863 5620 4.351111 ACTGGTTCTCCTTATGTTGTTCCT 59.649 41.667 0.00 0.00 34.23 3.36
4864 5621 5.163088 ACTGGTTCTCCTTATGTTGTTCCTT 60.163 40.000 0.00 0.00 34.23 3.36
4879 5636 1.679139 TCCTTGTGCCTTCTTGTGTG 58.321 50.000 0.00 0.00 0.00 3.82
4902 5659 4.218417 GTGTTGGATGCCATCTTTTGTACT 59.782 41.667 4.41 0.00 31.53 2.73
4903 5660 4.458989 TGTTGGATGCCATCTTTTGTACTC 59.541 41.667 4.41 0.00 31.53 2.59
4904 5661 3.620488 TGGATGCCATCTTTTGTACTCC 58.380 45.455 4.41 0.00 0.00 3.85
4905 5662 2.952310 GGATGCCATCTTTTGTACTCCC 59.048 50.000 4.41 0.00 0.00 4.30
4906 5663 3.372025 GGATGCCATCTTTTGTACTCCCT 60.372 47.826 4.41 0.00 0.00 4.20
4907 5664 3.350219 TGCCATCTTTTGTACTCCCTC 57.650 47.619 0.00 0.00 0.00 4.30
4908 5665 2.026262 TGCCATCTTTTGTACTCCCTCC 60.026 50.000 0.00 0.00 0.00 4.30
4909 5666 2.906354 CCATCTTTTGTACTCCCTCCG 58.094 52.381 0.00 0.00 0.00 4.63
4910 5667 2.236395 CCATCTTTTGTACTCCCTCCGT 59.764 50.000 0.00 0.00 0.00 4.69
4911 5668 3.307480 CCATCTTTTGTACTCCCTCCGTT 60.307 47.826 0.00 0.00 0.00 4.44
4912 5669 3.672767 TCTTTTGTACTCCCTCCGTTC 57.327 47.619 0.00 0.00 0.00 3.95
4913 5670 2.967201 TCTTTTGTACTCCCTCCGTTCA 59.033 45.455 0.00 0.00 0.00 3.18
4914 5671 3.006537 TCTTTTGTACTCCCTCCGTTCAG 59.993 47.826 0.00 0.00 0.00 3.02
4915 5672 2.297698 TTGTACTCCCTCCGTTCAGA 57.702 50.000 0.00 0.00 0.00 3.27
4916 5673 2.297698 TGTACTCCCTCCGTTCAGAA 57.702 50.000 0.00 0.00 0.00 3.02
4917 5674 2.816411 TGTACTCCCTCCGTTCAGAAT 58.184 47.619 0.00 0.00 0.00 2.40
4918 5675 3.170717 TGTACTCCCTCCGTTCAGAATT 58.829 45.455 0.00 0.00 0.00 2.17
4919 5676 4.346730 TGTACTCCCTCCGTTCAGAATTA 58.653 43.478 0.00 0.00 0.00 1.40
4920 5677 3.889520 ACTCCCTCCGTTCAGAATTAC 57.110 47.619 0.00 0.00 0.00 1.89
4921 5678 3.442076 ACTCCCTCCGTTCAGAATTACT 58.558 45.455 0.00 0.00 0.00 2.24
4922 5679 3.838903 ACTCCCTCCGTTCAGAATTACTT 59.161 43.478 0.00 0.00 0.00 2.24
4923 5680 4.184629 CTCCCTCCGTTCAGAATTACTTG 58.815 47.826 0.00 0.00 0.00 3.16
4924 5681 3.581332 TCCCTCCGTTCAGAATTACTTGT 59.419 43.478 0.00 0.00 0.00 3.16
4925 5682 3.933332 CCCTCCGTTCAGAATTACTTGTC 59.067 47.826 0.00 0.00 0.00 3.18
4926 5683 4.322801 CCCTCCGTTCAGAATTACTTGTCT 60.323 45.833 0.00 0.00 0.00 3.41
4927 5684 4.865365 CCTCCGTTCAGAATTACTTGTCTC 59.135 45.833 0.00 0.00 0.00 3.36
4928 5685 4.482386 TCCGTTCAGAATTACTTGTCTCG 58.518 43.478 0.00 0.00 0.00 4.04
4929 5686 4.216902 TCCGTTCAGAATTACTTGTCTCGA 59.783 41.667 0.00 0.00 0.00 4.04
4930 5687 4.921515 CCGTTCAGAATTACTTGTCTCGAA 59.078 41.667 0.00 0.00 0.00 3.71
4931 5688 5.404366 CCGTTCAGAATTACTTGTCTCGAAA 59.596 40.000 0.00 0.00 0.00 3.46
4932 5689 6.073980 CCGTTCAGAATTACTTGTCTCGAAAA 60.074 38.462 0.00 0.00 0.00 2.29
4933 5690 7.360101 CCGTTCAGAATTACTTGTCTCGAAAAT 60.360 37.037 0.00 0.00 0.00 1.82
4934 5691 7.475565 CGTTCAGAATTACTTGTCTCGAAAATG 59.524 37.037 0.00 0.00 0.00 2.32
4935 5692 7.364522 TCAGAATTACTTGTCTCGAAAATGG 57.635 36.000 0.00 0.00 0.00 3.16
4936 5693 7.158697 TCAGAATTACTTGTCTCGAAAATGGA 58.841 34.615 0.00 0.00 0.00 3.41
4937 5694 7.824289 TCAGAATTACTTGTCTCGAAAATGGAT 59.176 33.333 0.00 0.00 0.00 3.41
4938 5695 7.907045 CAGAATTACTTGTCTCGAAAATGGATG 59.093 37.037 0.00 0.00 0.00 3.51
4939 5696 7.607991 AGAATTACTTGTCTCGAAAATGGATGT 59.392 33.333 0.00 0.00 0.00 3.06
4940 5697 8.786826 AATTACTTGTCTCGAAAATGGATGTA 57.213 30.769 0.00 0.00 0.00 2.29
4941 5698 8.964476 ATTACTTGTCTCGAAAATGGATGTAT 57.036 30.769 0.00 0.00 0.00 2.29
4942 5699 6.910536 ACTTGTCTCGAAAATGGATGTATC 57.089 37.500 0.00 0.00 0.00 2.24
4943 5700 6.644347 ACTTGTCTCGAAAATGGATGTATCT 58.356 36.000 0.00 0.00 0.00 1.98
4944 5701 7.782049 ACTTGTCTCGAAAATGGATGTATCTA 58.218 34.615 0.00 0.00 0.00 1.98
4945 5702 7.923344 ACTTGTCTCGAAAATGGATGTATCTAG 59.077 37.037 0.00 0.00 0.00 2.43
4946 5703 7.582667 TGTCTCGAAAATGGATGTATCTAGA 57.417 36.000 0.00 0.00 0.00 2.43
4947 5704 8.183104 TGTCTCGAAAATGGATGTATCTAGAT 57.817 34.615 10.73 10.73 0.00 1.98
4948 5705 8.084684 TGTCTCGAAAATGGATGTATCTAGATG 58.915 37.037 15.79 0.00 0.00 2.90
4949 5706 8.085296 GTCTCGAAAATGGATGTATCTAGATGT 58.915 37.037 15.79 1.25 0.00 3.06
4950 5707 9.297037 TCTCGAAAATGGATGTATCTAGATGTA 57.703 33.333 15.79 4.44 0.00 2.29
4977 5734 9.542462 TTTTAGTTCTAGATACATCCATTTCCG 57.458 33.333 0.00 0.00 0.00 4.30
4978 5735 6.978674 AGTTCTAGATACATCCATTTCCGA 57.021 37.500 0.00 0.00 0.00 4.55
4979 5736 6.987386 AGTTCTAGATACATCCATTTCCGAG 58.013 40.000 0.00 0.00 0.00 4.63
4980 5737 6.778069 AGTTCTAGATACATCCATTTCCGAGA 59.222 38.462 0.00 0.00 0.00 4.04
4981 5738 6.576662 TCTAGATACATCCATTTCCGAGAC 57.423 41.667 0.00 0.00 0.00 3.36
4982 5739 6.068670 TCTAGATACATCCATTTCCGAGACA 58.931 40.000 0.00 0.00 0.00 3.41
4983 5740 5.614324 AGATACATCCATTTCCGAGACAA 57.386 39.130 0.00 0.00 0.00 3.18
4984 5741 5.605534 AGATACATCCATTTCCGAGACAAG 58.394 41.667 0.00 0.00 0.00 3.16
4985 5742 3.703001 ACATCCATTTCCGAGACAAGT 57.297 42.857 0.00 0.00 0.00 3.16
4986 5743 4.819105 ACATCCATTTCCGAGACAAGTA 57.181 40.909 0.00 0.00 0.00 2.24
4987 5744 5.160607 ACATCCATTTCCGAGACAAGTAA 57.839 39.130 0.00 0.00 0.00 2.24
4988 5745 5.745227 ACATCCATTTCCGAGACAAGTAAT 58.255 37.500 0.00 0.00 0.00 1.89
4989 5746 6.180472 ACATCCATTTCCGAGACAAGTAATT 58.820 36.000 0.00 0.00 0.00 1.40
4990 5747 6.316390 ACATCCATTTCCGAGACAAGTAATTC 59.684 38.462 0.00 0.00 0.00 2.17
4991 5748 5.183228 TCCATTTCCGAGACAAGTAATTCC 58.817 41.667 0.00 0.00 0.00 3.01
4992 5749 4.034048 CCATTTCCGAGACAAGTAATTCCG 59.966 45.833 0.00 0.00 0.00 4.30
4993 5750 4.524316 TTTCCGAGACAAGTAATTCCGA 57.476 40.909 0.00 0.00 0.00 4.55
4994 5751 4.524316 TTCCGAGACAAGTAATTCCGAA 57.476 40.909 0.00 0.00 0.00 4.30
4995 5752 3.841643 TCCGAGACAAGTAATTCCGAAC 58.158 45.455 0.00 0.00 0.00 3.95
4996 5753 2.597305 CCGAGACAAGTAATTCCGAACG 59.403 50.000 0.00 0.00 0.00 3.95
4997 5754 2.597305 CGAGACAAGTAATTCCGAACGG 59.403 50.000 6.94 6.94 0.00 4.44
4998 5755 3.671433 CGAGACAAGTAATTCCGAACGGA 60.671 47.826 12.04 12.04 43.52 4.69
4999 5756 3.846360 AGACAAGTAATTCCGAACGGAG 58.154 45.455 15.34 5.60 46.06 4.63
5000 5757 2.928116 GACAAGTAATTCCGAACGGAGG 59.072 50.000 15.34 4.52 46.06 4.30
5001 5758 2.277084 CAAGTAATTCCGAACGGAGGG 58.723 52.381 15.34 0.00 46.06 4.30
5002 5759 1.856629 AGTAATTCCGAACGGAGGGA 58.143 50.000 15.34 2.49 46.06 4.20
5003 5760 1.755380 AGTAATTCCGAACGGAGGGAG 59.245 52.381 15.34 0.00 46.06 4.30
5004 5761 1.479730 GTAATTCCGAACGGAGGGAGT 59.520 52.381 15.34 4.12 46.06 3.85
5005 5762 1.856629 AATTCCGAACGGAGGGAGTA 58.143 50.000 15.34 1.05 46.06 2.59
5006 5763 1.109609 ATTCCGAACGGAGGGAGTAC 58.890 55.000 15.34 0.00 46.06 2.73
5058 5815 1.215382 GAAAATGGTTCAGGCCGGC 59.785 57.895 21.18 21.18 0.00 6.13
5173 5940 9.979270 CTTATGATTTTGATAGCATATCGTTCC 57.021 33.333 4.33 0.00 0.00 3.62
5174 5941 9.725019 TTATGATTTTGATAGCATATCGTTCCT 57.275 29.630 4.33 0.00 0.00 3.36
5175 5942 7.425577 TGATTTTGATAGCATATCGTTCCTG 57.574 36.000 0.00 0.00 0.00 3.86
5189 6008 2.348666 CGTTCCTGATTTACTTCGGCTG 59.651 50.000 0.00 0.00 0.00 4.85
5235 6054 6.554334 TTCTACCAAGAAGAAATGAAACGG 57.446 37.500 0.00 0.00 36.80 4.44
5259 6078 6.212888 ACTTCAATGGATGGCTACAAAATC 57.787 37.500 0.00 0.00 0.00 2.17
5262 6081 1.388547 TGGATGGCTACAAAATCGGC 58.611 50.000 0.00 0.00 0.00 5.54
5301 6122 2.582052 CAACAGGTTTAGCCCTTCACA 58.418 47.619 0.00 0.00 38.26 3.58
5302 6123 2.554032 CAACAGGTTTAGCCCTTCACAG 59.446 50.000 0.00 0.00 38.26 3.66
5304 6125 2.441750 ACAGGTTTAGCCCTTCACAGAA 59.558 45.455 0.00 0.00 38.26 3.02
5305 6126 3.077359 CAGGTTTAGCCCTTCACAGAAG 58.923 50.000 0.00 0.00 38.26 2.85
5307 6128 3.008485 AGGTTTAGCCCTTCACAGAAGAG 59.992 47.826 8.26 0.00 38.26 2.85
5308 6129 3.244596 GGTTTAGCCCTTCACAGAAGAGT 60.245 47.826 8.26 0.00 0.00 3.24
5309 6130 4.020485 GGTTTAGCCCTTCACAGAAGAGTA 60.020 45.833 8.26 0.00 0.00 2.59
5318 6160 5.991606 CCTTCACAGAAGAGTAACATCACAA 59.008 40.000 8.26 0.00 0.00 3.33
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
118 119 2.642996 ATTGGCGGCATCATCGACGA 62.643 55.000 14.32 0.00 38.72 4.20
327 330 4.265904 TCGAAGACACATTACACACCAT 57.734 40.909 0.00 0.00 0.00 3.55
359 362 1.251527 ATCCGCTCGAGACACACCTT 61.252 55.000 18.75 0.00 0.00 3.50
371 374 2.594321 CGAATCTCATGAGATCCGCTC 58.406 52.381 33.00 25.32 46.75 5.03
383 386 3.446161 AGATAAACACCGACCGAATCTCA 59.554 43.478 0.00 0.00 0.00 3.27
415 418 2.715046 ACAAAGATCGGATGCACACAT 58.285 42.857 0.00 0.00 39.98 3.21
433 436 5.196341 AGACATAAGAACACAGACGAACA 57.804 39.130 0.00 0.00 0.00 3.18
450 453 4.020573 TGAACGGATCCAACTTGTAGACAT 60.021 41.667 13.41 0.00 0.00 3.06
518 522 5.878669 GTCGTCATATAAGGTCCCAAAAACT 59.121 40.000 0.00 0.00 0.00 2.66
545 549 5.013183 ACCTTTGTAGTAGCCACTCAGAAAT 59.987 40.000 0.00 0.00 36.14 2.17
588 594 2.511600 CCACCGTCATCGCCCTTC 60.512 66.667 0.00 0.00 35.54 3.46
610 617 3.019799 AGCACTAGAGGGAATCGAAGA 57.980 47.619 0.00 0.00 45.75 2.87
620 627 2.329379 GACGAACACAAGCACTAGAGG 58.671 52.381 0.00 0.00 0.00 3.69
634 641 2.679837 TGTAGATCACCTACCGACGAAC 59.320 50.000 0.00 0.00 45.60 3.95
635 642 2.989909 TGTAGATCACCTACCGACGAA 58.010 47.619 0.00 0.00 45.60 3.85
642 649 7.658261 TGCATACATACTTGTAGATCACCTAC 58.342 38.462 0.00 0.00 46.21 3.18
692 761 8.851541 TTCATCAAATATCATATAGCAGTGCA 57.148 30.769 19.20 3.62 0.00 4.57
770 839 2.781595 AATGGTGGCGACGTGAGGAC 62.782 60.000 0.00 0.00 0.00 3.85
789 858 4.753107 GGATAACGTCTCTTTGGTTTGACA 59.247 41.667 0.00 0.00 0.00 3.58
800 869 3.624777 TCTAAACCGGGATAACGTCTCT 58.375 45.455 6.32 0.00 0.00 3.10
810 879 2.493035 GTTTCCGTTTCTAAACCGGGA 58.507 47.619 6.32 7.15 35.51 5.14
1205 1284 2.622962 GGCCGGTTCAACGAAAGGG 61.623 63.158 1.90 0.00 35.47 3.95
1311 1396 2.487762 TGCAGGGAACATGAAAATCGAC 59.512 45.455 0.00 0.00 0.00 4.20
1345 1430 2.030717 CGAGGGAACTATCTCCATGACG 60.031 54.545 0.00 0.00 44.43 4.35
1359 1444 2.838202 ACTAGGCTGAAAATCGAGGGAA 59.162 45.455 0.00 0.00 0.00 3.97
1371 1456 7.371159 CAATTCGACAGATATTACTAGGCTGA 58.629 38.462 0.00 0.00 0.00 4.26
1459 1555 9.017509 GCTCCAAATATTCAATCAATCCATAGA 57.982 33.333 0.00 0.00 0.00 1.98
1462 1558 7.606135 TGCTCCAAATATTCAATCAATCCAT 57.394 32.000 0.00 0.00 0.00 3.41
1468 1564 5.070714 CCCCATTGCTCCAAATATTCAATCA 59.929 40.000 0.00 0.00 0.00 2.57
1482 1578 1.877680 GCAAACAAACCCCCATTGCTC 60.878 52.381 0.00 0.00 42.24 4.26
1487 1583 2.740438 GCGCAAACAAACCCCCAT 59.260 55.556 0.30 0.00 0.00 4.00
1488 1584 3.541713 GGCGCAAACAAACCCCCA 61.542 61.111 10.83 0.00 0.00 4.96
1615 1713 3.988976 TTCCAGCAAGACAGAATAGCT 57.011 42.857 0.00 0.00 35.63 3.32
1657 1757 7.496529 TCTGAAAGAAATGACACACTTTAGG 57.503 36.000 0.00 0.00 42.31 2.69
1688 1797 4.142182 GCATAAGCACATTAAAGGAGGCAA 60.142 41.667 0.00 0.00 41.58 4.52
1690 1799 3.969899 GCATAAGCACATTAAAGGAGGC 58.030 45.455 0.00 0.00 41.58 4.70
1727 1836 4.751600 CCAAATCTCGCAGCATATGTTCTA 59.248 41.667 4.29 0.00 0.00 2.10
1728 1837 3.562973 CCAAATCTCGCAGCATATGTTCT 59.437 43.478 4.29 0.00 0.00 3.01
1729 1838 3.851105 GCCAAATCTCGCAGCATATGTTC 60.851 47.826 4.29 0.00 0.00 3.18
1730 1839 2.033801 GCCAAATCTCGCAGCATATGTT 59.966 45.455 4.29 0.00 0.00 2.71
1731 1840 1.605710 GCCAAATCTCGCAGCATATGT 59.394 47.619 4.29 0.00 0.00 2.29
1732 1841 1.878088 AGCCAAATCTCGCAGCATATG 59.122 47.619 0.00 0.00 0.00 1.78
1733 1842 2.267174 AGCCAAATCTCGCAGCATAT 57.733 45.000 0.00 0.00 0.00 1.78
1742 1851 8.288208 CAGAACAATCATACATAGCCAAATCTC 58.712 37.037 0.00 0.00 0.00 2.75
1746 1855 7.936496 TTCAGAACAATCATACATAGCCAAA 57.064 32.000 0.00 0.00 0.00 3.28
1783 1893 8.897752 ACCAAGCTTTGATAATCTTCATAAGAC 58.102 33.333 4.25 0.00 41.01 3.01
1791 1901 7.530426 AAGACAACCAAGCTTTGATAATCTT 57.470 32.000 4.25 3.99 0.00 2.40
1804 1914 6.204108 AGTTTCGGTTATGTAAGACAACCAAG 59.796 38.462 3.84 0.00 41.52 3.61
1818 1928 3.263425 ACAGGGATGTCAGTTTCGGTTAT 59.737 43.478 0.00 0.00 0.00 1.89
1831 1941 1.143684 ACAGCAACAGAACAGGGATGT 59.856 47.619 0.00 0.00 0.00 3.06
1850 1960 8.926715 AAGAAATTTGAAAACAGTACAAGGAC 57.073 30.769 0.00 0.00 0.00 3.85
1866 1976 9.249457 GAACAAGAGAAAAGGGTAAGAAATTTG 57.751 33.333 0.00 0.00 0.00 2.32
1900 2010 6.978080 CCACACAAATGCAATAAGGTATAACC 59.022 38.462 0.00 0.00 38.99 2.85
1906 2016 2.028203 GGCCACACAAATGCAATAAGGT 60.028 45.455 0.00 0.00 0.00 3.50
1921 2031 2.169144 CACTGACAGATAGATGGCCACA 59.831 50.000 8.16 0.00 0.00 4.17
1931 2041 4.696877 CACCTGCAAAATCACTGACAGATA 59.303 41.667 10.08 0.00 0.00 1.98
1964 2074 4.261578 TCAAGAACCTTACCCTAACACG 57.738 45.455 0.00 0.00 0.00 4.49
1976 2086 2.040412 GTCCCAGAACCATCAAGAACCT 59.960 50.000 0.00 0.00 0.00 3.50
1993 2103 1.338020 CCAAAGCAAGAACTGTGTCCC 59.662 52.381 0.00 0.00 0.00 4.46
1994 2104 1.269257 GCCAAAGCAAGAACTGTGTCC 60.269 52.381 0.00 0.00 39.53 4.02
1995 2105 2.125461 GCCAAAGCAAGAACTGTGTC 57.875 50.000 0.00 0.00 39.53 3.67
2004 2114 7.990490 GATGGTGAATCTTTTGCCAAAGCAAG 61.990 42.308 5.41 0.00 44.73 4.01
2005 2115 6.255330 GATGGTGAATCTTTTGCCAAAGCAA 61.255 40.000 5.41 0.00 43.58 3.91
2006 2116 4.800249 GATGGTGAATCTTTTGCCAAAGCA 60.800 41.667 5.41 0.00 39.56 3.91
2007 2117 3.110447 TGGTGAATCTTTTGCCAAAGC 57.890 42.857 5.41 0.00 39.56 3.51
2008 2118 5.143376 AGATGGTGAATCTTTTGCCAAAG 57.857 39.130 3.90 3.90 43.52 2.77
2033 2143 1.339535 TGCATGGCCTACAAACATCGA 60.340 47.619 3.32 0.00 0.00 3.59
2034 2144 1.093972 TGCATGGCCTACAAACATCG 58.906 50.000 3.32 0.00 0.00 3.84
2072 2182 5.486526 TGGACTTCTGTTTTTGTGCAATTT 58.513 33.333 0.00 0.00 0.00 1.82
2087 2197 6.147821 CACACGAACATAGAAAATGGACTTCT 59.852 38.462 0.00 0.00 37.00 2.85
2120 2230 9.352784 TGTGTTTTGTCAAAGAAATAAGAACAG 57.647 29.630 0.00 0.00 0.00 3.16
2131 2241 9.265901 TCAAAGATTTTTGTGTTTTGTCAAAGA 57.734 25.926 8.43 0.00 43.33 2.52
2151 2261 1.896220 AACGCATGAAGGCTCAAAGA 58.104 45.000 0.00 0.00 34.49 2.52
2163 2273 5.403897 AACTATCATTCGGTAAACGCATG 57.596 39.130 0.00 0.00 45.60 4.06
2171 2281 7.149973 GGCTTGTACATAACTATCATTCGGTA 58.850 38.462 0.00 0.00 0.00 4.02
2178 2288 6.493189 TGATGGGCTTGTACATAACTATCA 57.507 37.500 12.79 12.79 0.00 2.15
2190 2301 0.032813 CCCTTCCATGATGGGCTTGT 60.033 55.000 12.26 0.00 39.59 3.16
2197 2308 0.819582 GTGTTGGCCCTTCCATGATG 59.180 55.000 0.00 0.00 46.04 3.07
2198 2309 0.324645 GGTGTTGGCCCTTCCATGAT 60.325 55.000 0.00 0.00 46.04 2.45
2199 2310 1.076549 GGTGTTGGCCCTTCCATGA 59.923 57.895 0.00 0.00 46.04 3.07
2279 2390 1.741706 GCATCCAAGTGACTCATGGTG 59.258 52.381 3.44 3.30 36.43 4.17
2291 2402 5.499139 AACGTAATATGGTTGCATCCAAG 57.501 39.130 20.09 9.94 41.09 3.61
2319 2431 1.935873 AGATTGGTTCATGCGATCACG 59.064 47.619 0.00 0.00 42.93 4.35
2325 2437 4.571984 TCAATAGTGAGATTGGTTCATGCG 59.428 41.667 0.00 0.00 37.41 4.73
2332 2444 9.212641 CGATGATTTATCAATAGTGAGATTGGT 57.787 33.333 0.00 0.00 40.69 3.67
2339 2451 9.599866 ACTTGAACGATGATTTATCAATAGTGA 57.400 29.630 0.00 0.00 40.69 3.41
2341 2453 9.383519 ACACTTGAACGATGATTTATCAATAGT 57.616 29.630 0.00 0.00 40.69 2.12
2344 2456 9.559958 GAAACACTTGAACGATGATTTATCAAT 57.440 29.630 0.00 0.00 40.69 2.57
2348 2460 7.174946 ACCAGAAACACTTGAACGATGATTTAT 59.825 33.333 0.00 0.00 0.00 1.40
2380 2492 6.869388 TCAATCACAAATGACCATGAAACATG 59.131 34.615 0.00 4.94 37.79 3.21
2381 2493 6.995364 TCAATCACAAATGACCATGAAACAT 58.005 32.000 0.00 0.00 37.79 2.71
2382 2494 6.402456 TCAATCACAAATGACCATGAAACA 57.598 33.333 0.00 0.00 37.79 2.83
2383 2495 7.894376 AATCAATCACAAATGACCATGAAAC 57.106 32.000 0.00 0.00 37.79 2.78
2384 2496 9.642327 CTAAATCAATCACAAATGACCATGAAA 57.358 29.630 0.00 0.00 37.79 2.69
2520 2632 6.166279 TCTACAGCTGATTGTACCTTTTCAG 58.834 40.000 23.35 0.00 38.86 3.02
2532 2644 4.750021 TGCAGAGATTCTACAGCTGATT 57.250 40.909 23.35 0.27 0.00 2.57
2551 2663 4.568152 AGTATTCACACAACCTTGTTGC 57.432 40.909 6.86 0.00 39.91 4.17
2570 2682 6.168270 AGACAAAGCTCAGAAACTAGAAGT 57.832 37.500 0.00 0.00 0.00 3.01
2574 2686 7.275341 CAGACATAGACAAAGCTCAGAAACTAG 59.725 40.741 0.00 0.00 0.00 2.57
2583 2695 3.854666 TCTGCAGACATAGACAAAGCTC 58.145 45.455 13.74 0.00 0.00 4.09
2648 2761 1.202582 CTTTCCTTCCTCTTCTCGCGA 59.797 52.381 9.26 9.26 0.00 5.87
2651 2764 4.464069 ACATCTTTCCTTCCTCTTCTCG 57.536 45.455 0.00 0.00 0.00 4.04
2792 2906 5.105797 CCTGCTTGCTTCCATAATGTAACAA 60.106 40.000 0.00 0.00 0.00 2.83
2794 2908 4.640201 TCCTGCTTGCTTCCATAATGTAAC 59.360 41.667 0.00 0.00 0.00 2.50
2854 2968 5.573380 TGCAGAAAGCTGGAATATATCCT 57.427 39.130 0.00 0.00 44.80 3.24
2855 2969 6.432162 TGAATGCAGAAAGCTGGAATATATCC 59.568 38.462 0.00 0.00 45.91 2.59
2856 2970 7.444629 TGAATGCAGAAAGCTGGAATATATC 57.555 36.000 0.00 0.00 45.91 1.63
2862 2976 5.898174 CATAATGAATGCAGAAAGCTGGAA 58.102 37.500 0.00 0.00 45.91 3.53
2911 3025 9.507280 CATTAATGTGGTCTAAACATGTGATTC 57.493 33.333 7.32 0.00 38.27 2.52
2941 3055 4.641989 GGAATGCAGAAACATGGAGTACAT 59.358 41.667 0.00 0.00 41.57 2.29
2943 3057 3.378427 GGGAATGCAGAAACATGGAGTAC 59.622 47.826 0.00 0.00 0.00 2.73
2945 3059 2.225091 TGGGAATGCAGAAACATGGAGT 60.225 45.455 0.00 0.00 0.00 3.85
2946 3060 2.449464 TGGGAATGCAGAAACATGGAG 58.551 47.619 0.00 0.00 0.00 3.86
2947 3061 2.601240 TGGGAATGCAGAAACATGGA 57.399 45.000 0.00 0.00 0.00 3.41
2949 3063 4.186159 GGATTTGGGAATGCAGAAACATG 58.814 43.478 0.00 0.00 34.13 3.21
2950 3064 3.198417 GGGATTTGGGAATGCAGAAACAT 59.802 43.478 0.00 0.00 35.50 2.71
2951 3065 2.566724 GGGATTTGGGAATGCAGAAACA 59.433 45.455 0.00 0.00 35.50 2.83
2952 3066 2.566724 TGGGATTTGGGAATGCAGAAAC 59.433 45.455 0.00 0.00 35.50 2.78
2953 3067 2.899975 TGGGATTTGGGAATGCAGAAA 58.100 42.857 0.00 0.00 35.50 2.52
2954 3068 2.619697 TGGGATTTGGGAATGCAGAA 57.380 45.000 0.00 0.00 35.50 3.02
2955 3069 2.619697 TTGGGATTTGGGAATGCAGA 57.380 45.000 0.00 0.00 35.50 4.26
2956 3070 2.743838 GCATTGGGATTTGGGAATGCAG 60.744 50.000 0.00 0.00 46.49 4.41
2957 3071 1.209990 GCATTGGGATTTGGGAATGCA 59.790 47.619 0.00 0.00 46.49 3.96
2958 3072 1.475571 GGCATTGGGATTTGGGAATGC 60.476 52.381 0.00 0.00 46.51 3.56
2959 3073 1.838715 TGGCATTGGGATTTGGGAATG 59.161 47.619 0.00 0.00 0.00 2.67
2960 3074 1.839354 GTGGCATTGGGATTTGGGAAT 59.161 47.619 0.00 0.00 0.00 3.01
2961 3075 1.274712 GTGGCATTGGGATTTGGGAA 58.725 50.000 0.00 0.00 0.00 3.97
2962 3076 0.115944 TGTGGCATTGGGATTTGGGA 59.884 50.000 0.00 0.00 0.00 4.37
2963 3077 1.205966 ATGTGGCATTGGGATTTGGG 58.794 50.000 0.00 0.00 0.00 4.12
2964 3078 2.502538 AGAATGTGGCATTGGGATTTGG 59.497 45.455 0.00 0.00 0.00 3.28
2965 3079 3.899052 AGAATGTGGCATTGGGATTTG 57.101 42.857 0.00 0.00 0.00 2.32
2966 3080 4.098894 AGAAGAATGTGGCATTGGGATTT 58.901 39.130 0.00 0.00 0.00 2.17
2967 3081 3.716431 AGAAGAATGTGGCATTGGGATT 58.284 40.909 0.00 0.00 0.00 3.01
2968 3082 3.393426 AGAAGAATGTGGCATTGGGAT 57.607 42.857 0.00 0.00 0.00 3.85
2971 3085 3.592059 CCAAAGAAGAATGTGGCATTGG 58.408 45.455 0.00 0.00 0.00 3.16
3022 3137 1.707427 AGACATCAAACCAAGGAGGCT 59.293 47.619 0.00 0.00 43.14 4.58
3028 3143 2.421424 GCAGGCTAGACATCAAACCAAG 59.579 50.000 0.00 0.00 0.00 3.61
3048 3163 3.256631 ACCAACAATTGTCTCAGATTGGC 59.743 43.478 18.74 0.00 38.96 4.52
3065 3180 5.934935 TCGAGGAACTATTCAAAACCAAC 57.065 39.130 0.00 0.00 41.55 3.77
3067 3182 5.237779 GTGTTCGAGGAACTATTCAAAACCA 59.762 40.000 9.61 0.00 41.55 3.67
3068 3183 5.334646 GGTGTTCGAGGAACTATTCAAAACC 60.335 44.000 9.61 3.15 41.55 3.27
3069 3184 5.237779 TGGTGTTCGAGGAACTATTCAAAAC 59.762 40.000 9.61 0.00 41.55 2.43
3070 3185 5.369833 TGGTGTTCGAGGAACTATTCAAAA 58.630 37.500 9.61 0.00 41.55 2.44
3071 3186 4.963373 TGGTGTTCGAGGAACTATTCAAA 58.037 39.130 9.61 0.00 41.55 2.69
3086 3203 1.234821 TTGCTCGGACATTGGTGTTC 58.765 50.000 0.00 0.00 39.09 3.18
3088 3205 1.608590 CTTTTGCTCGGACATTGGTGT 59.391 47.619 0.00 0.00 42.49 4.16
3099 3216 9.607285 ACATGTTAATACTTAAACTTTTGCTCG 57.393 29.630 0.00 0.00 0.00 5.03
3111 3228 8.020777 TCCGGACCATTACATGTTAATACTTA 57.979 34.615 2.30 0.00 0.00 2.24
3114 3231 7.556733 TTTCCGGACCATTACATGTTAATAC 57.443 36.000 1.83 0.00 0.00 1.89
3117 3275 7.993758 TCATATTTCCGGACCATTACATGTTAA 59.006 33.333 1.83 0.00 0.00 2.01
3129 3390 4.651778 TCCATGATTCATATTTCCGGACC 58.348 43.478 1.83 0.00 0.00 4.46
3143 3404 9.246670 TGTTCTCAGAATTAACATTCCATGATT 57.753 29.630 0.00 0.00 39.95 2.57
3168 3429 0.963962 AAAGCCTCAGTGCACCAATG 59.036 50.000 14.63 5.65 0.00 2.82
3195 3457 2.233431 CAGAGCCAGACTGCTTCTTAGT 59.767 50.000 0.00 0.00 42.95 2.24
3196 3458 2.418471 CCAGAGCCAGACTGCTTCTTAG 60.418 54.545 0.00 0.00 42.95 2.18
3197 3459 1.552337 CCAGAGCCAGACTGCTTCTTA 59.448 52.381 0.00 0.00 42.95 2.10
3198 3460 0.324285 CCAGAGCCAGACTGCTTCTT 59.676 55.000 0.00 0.00 42.95 2.52
3230 3494 6.531021 ACCTAGCAACTACACAACAGTAATT 58.469 36.000 0.00 0.00 0.00 1.40
3231 3495 6.110411 ACCTAGCAACTACACAACAGTAAT 57.890 37.500 0.00 0.00 0.00 1.89
3232 3496 5.540400 ACCTAGCAACTACACAACAGTAA 57.460 39.130 0.00 0.00 0.00 2.24
3237 3501 5.744666 TGAAAACCTAGCAACTACACAAC 57.255 39.130 0.00 0.00 0.00 3.32
3238 3502 7.221450 ACTATGAAAACCTAGCAACTACACAA 58.779 34.615 0.00 0.00 0.00 3.33
3281 3547 8.915654 CCAACTGAAATGAAGTGCTATAAAAAC 58.084 33.333 0.00 0.00 0.00 2.43
3315 3581 6.126409 TCCTAAACCAACAAACATCAAGAGT 58.874 36.000 0.00 0.00 0.00 3.24
3342 3608 5.296531 TCATGTATGCAGCAACGTGATATTT 59.703 36.000 20.03 0.00 36.86 1.40
3359 3625 9.836864 TTATTTATTCAGTGCTGACTCATGTAT 57.163 29.630 0.79 0.00 39.66 2.29
3573 4207 0.110373 CAAACTGTCCTTTACGCCGC 60.110 55.000 0.00 0.00 0.00 6.53
3650 4284 1.260544 ATGATCATCCTCGCCATCGA 58.739 50.000 1.18 0.00 43.28 3.59
3716 4350 6.090763 TGTGTATGAAGTGATGAAACGTGATC 59.909 38.462 0.00 0.00 0.00 2.92
3856 4490 2.026822 ACAAGCATTACAGAGGGTCCTG 60.027 50.000 0.00 0.00 39.93 3.86
3904 4538 3.740115 TCAAGGTTGCTAAAGTGAGGAC 58.260 45.455 0.00 0.00 0.00 3.85
3934 4568 3.791353 CACGCTTGAAAGAAAGGAAACAC 59.209 43.478 0.00 0.00 0.00 3.32
3947 4687 8.522178 TTTACTTTTTCTTTTTCACGCTTGAA 57.478 26.923 0.75 0.75 40.14 2.69
3948 4688 8.522178 TTTTACTTTTTCTTTTTCACGCTTGA 57.478 26.923 0.00 0.00 0.00 3.02
3949 4689 7.422462 GCTTTTACTTTTTCTTTTTCACGCTTG 59.578 33.333 0.00 0.00 0.00 4.01
3950 4690 7.117092 TGCTTTTACTTTTTCTTTTTCACGCTT 59.883 29.630 0.00 0.00 0.00 4.68
3951 4691 6.588373 TGCTTTTACTTTTTCTTTTTCACGCT 59.412 30.769 0.00 0.00 0.00 5.07
3952 4692 6.757162 TGCTTTTACTTTTTCTTTTTCACGC 58.243 32.000 0.00 0.00 0.00 5.34
3953 4693 6.894517 GCTGCTTTTACTTTTTCTTTTTCACG 59.105 34.615 0.00 0.00 0.00 4.35
3954 4694 7.738345 TGCTGCTTTTACTTTTTCTTTTTCAC 58.262 30.769 0.00 0.00 0.00 3.18
3955 4695 7.897575 TGCTGCTTTTACTTTTTCTTTTTCA 57.102 28.000 0.00 0.00 0.00 2.69
3956 4696 7.374228 GCATGCTGCTTTTACTTTTTCTTTTTC 59.626 33.333 11.37 0.00 40.96 2.29
3957 4697 7.188834 GCATGCTGCTTTTACTTTTTCTTTTT 58.811 30.769 11.37 0.00 40.96 1.94
3958 4698 6.718388 GCATGCTGCTTTTACTTTTTCTTTT 58.282 32.000 11.37 0.00 40.96 2.27
3959 4699 6.291067 GCATGCTGCTTTTACTTTTTCTTT 57.709 33.333 11.37 0.00 40.96 2.52
4007 4747 9.862585 GCAATTTGTAAACCAGTTAAATTTCAG 57.137 29.630 0.00 0.00 30.88 3.02
4009 4749 9.051679 AGGCAATTTGTAAACCAGTTAAATTTC 57.948 29.630 0.00 0.00 30.88 2.17
4039 4779 7.661437 GGTGTCATAAATATCAGCAGGTAATCA 59.339 37.037 0.00 0.00 0.00 2.57
4054 4794 6.567050 CAAATTGCTAGCAGGTGTCATAAAT 58.433 36.000 18.45 1.21 0.00 1.40
4083 4823 4.826274 TCTGAGGTTAAGCAGTAGCAAT 57.174 40.909 7.52 0.00 45.49 3.56
4085 4825 5.932619 TTATCTGAGGTTAAGCAGTAGCA 57.067 39.130 7.52 0.00 45.49 3.49
4092 4832 6.122964 ACCCTGAAATTATCTGAGGTTAAGC 58.877 40.000 0.00 0.00 31.29 3.09
4140 4880 1.523154 GCTGCACGGTCATTTTGGGA 61.523 55.000 0.00 0.00 0.00 4.37
4152 4892 0.376152 GATTGACAGGATGCTGCACG 59.624 55.000 14.95 0.00 42.53 5.34
4164 4904 3.438781 GCACCATTTTACTCGGATTGACA 59.561 43.478 0.00 0.00 0.00 3.58
4166 4906 2.675844 CGCACCATTTTACTCGGATTGA 59.324 45.455 0.00 0.00 0.00 2.57
4172 4912 2.997986 ACCTAACGCACCATTTTACTCG 59.002 45.455 0.00 0.00 0.00 4.18
4192 4932 8.946085 TCCAATCAAACAAGTTATATCACAGAC 58.054 33.333 0.00 0.00 0.00 3.51
4233 4973 8.452989 CTGTGTAGGAAGAAATGCAAATAAAC 57.547 34.615 0.00 0.00 0.00 2.01
4288 5028 2.540101 GGTATGATTACGCTCAGCACAC 59.460 50.000 0.00 0.00 0.00 3.82
4299 5039 5.295787 TCCATTTTGACTGCGGTATGATTAC 59.704 40.000 0.00 0.00 0.00 1.89
4310 5050 5.125097 ACATCTCAGAATCCATTTTGACTGC 59.875 40.000 0.00 0.00 29.30 4.40
4312 5052 7.066766 GCTTACATCTCAGAATCCATTTTGACT 59.933 37.037 0.00 0.00 29.30 3.41
4324 5064 3.988976 AGGCTTGCTTACATCTCAGAA 57.011 42.857 0.00 0.00 0.00 3.02
4329 5069 5.645497 CAGTAAAGAAGGCTTGCTTACATCT 59.355 40.000 21.27 3.72 33.79 2.90
4340 5080 3.517100 TCTGAGATGCAGTAAAGAAGGCT 59.483 43.478 0.00 0.00 45.14 4.58
4341 5081 3.866651 TCTGAGATGCAGTAAAGAAGGC 58.133 45.455 0.00 0.00 45.14 4.35
4348 5097 4.708909 AGACAGTGATCTGAGATGCAGTAA 59.291 41.667 0.00 0.00 45.14 2.24
4361 5110 3.634448 TCCTAGCTGCTAAGACAGTGATC 59.366 47.826 11.02 0.00 39.96 2.92
4365 5114 3.094484 ACTCCTAGCTGCTAAGACAGT 57.906 47.619 11.02 7.15 39.96 3.55
4372 5121 9.803507 TGTAAAATAGTATACTCCTAGCTGCTA 57.196 33.333 9.12 9.34 0.00 3.49
4373 5122 8.707796 TGTAAAATAGTATACTCCTAGCTGCT 57.292 34.615 9.12 7.57 0.00 4.24
4374 5123 9.413048 CTTGTAAAATAGTATACTCCTAGCTGC 57.587 37.037 9.12 0.00 0.00 5.25
4375 5124 9.915629 CCTTGTAAAATAGTATACTCCTAGCTG 57.084 37.037 9.12 0.00 0.00 4.24
4376 5125 9.657728 ACCTTGTAAAATAGTATACTCCTAGCT 57.342 33.333 9.12 0.00 0.00 3.32
4377 5126 9.911138 GACCTTGTAAAATAGTATACTCCTAGC 57.089 37.037 9.12 0.00 0.00 3.42
4380 5129 9.145442 GAGGACCTTGTAAAATAGTATACTCCT 57.855 37.037 9.12 4.95 30.16 3.69
4381 5130 8.921205 TGAGGACCTTGTAAAATAGTATACTCC 58.079 37.037 9.12 0.00 0.00 3.85
4387 5136 7.456902 AGGAGTTGAGGACCTTGTAAAATAGTA 59.543 37.037 0.00 0.00 0.00 1.82
4389 5138 6.712276 AGGAGTTGAGGACCTTGTAAAATAG 58.288 40.000 0.00 0.00 0.00 1.73
4390 5139 6.271391 TGAGGAGTTGAGGACCTTGTAAAATA 59.729 38.462 0.00 0.00 33.89 1.40
4391 5140 5.073144 TGAGGAGTTGAGGACCTTGTAAAAT 59.927 40.000 0.00 0.00 33.89 1.82
4392 5141 4.410883 TGAGGAGTTGAGGACCTTGTAAAA 59.589 41.667 0.00 0.00 33.89 1.52
4393 5142 3.971305 TGAGGAGTTGAGGACCTTGTAAA 59.029 43.478 0.00 0.00 33.89 2.01
4394 5143 3.583228 TGAGGAGTTGAGGACCTTGTAA 58.417 45.455 0.00 0.00 33.89 2.41
4395 5144 3.254093 TGAGGAGTTGAGGACCTTGTA 57.746 47.619 0.00 0.00 33.89 2.41
4396 5145 2.103153 TGAGGAGTTGAGGACCTTGT 57.897 50.000 0.00 0.00 33.89 3.16
4397 5146 2.304180 ACATGAGGAGTTGAGGACCTTG 59.696 50.000 0.00 0.00 33.89 3.61
4398 5147 2.569404 GACATGAGGAGTTGAGGACCTT 59.431 50.000 0.00 0.00 33.89 3.50
4399 5148 2.183679 GACATGAGGAGTTGAGGACCT 58.816 52.381 0.00 0.00 36.68 3.85
4400 5149 1.902508 TGACATGAGGAGTTGAGGACC 59.097 52.381 0.00 0.00 0.00 4.46
4401 5150 2.093764 CCTGACATGAGGAGTTGAGGAC 60.094 54.545 0.00 0.00 34.69 3.85
4402 5151 2.182827 CCTGACATGAGGAGTTGAGGA 58.817 52.381 0.00 0.00 34.69 3.71
4403 5152 1.209019 CCCTGACATGAGGAGTTGAGG 59.791 57.143 0.00 0.00 34.69 3.86
4404 5153 1.905215 ACCCTGACATGAGGAGTTGAG 59.095 52.381 0.00 0.00 34.69 3.02
4405 5154 2.030027 ACCCTGACATGAGGAGTTGA 57.970 50.000 0.00 0.00 34.69 3.18
4406 5155 2.867109 AACCCTGACATGAGGAGTTG 57.133 50.000 0.00 0.00 34.69 3.16
4407 5156 4.993705 TTAAACCCTGACATGAGGAGTT 57.006 40.909 0.00 0.90 34.69 3.01
4408 5157 4.993705 TTTAAACCCTGACATGAGGAGT 57.006 40.909 0.00 0.00 34.69 3.85
4478 5227 8.457238 AAGGATCAAGAAAGTTAGATAATGGC 57.543 34.615 0.00 0.00 0.00 4.40
4516 5265 3.650942 AGAAAGTAGAATCCCCACACACA 59.349 43.478 0.00 0.00 0.00 3.72
4542 5291 0.685097 TTCTTGTTCCGGACTCCTGG 59.315 55.000 1.83 0.00 40.31 4.45
4582 5331 3.112709 GTGTCGCCTTCAGTCGCC 61.113 66.667 0.00 0.00 0.00 5.54
4588 5337 2.359850 GCCATGGTGTCGCCTTCA 60.360 61.111 14.67 0.00 38.35 3.02
4599 5348 3.021695 ACTTGTCATGAATCAGCCATGG 58.978 45.455 7.63 7.63 41.16 3.66
4633 5383 9.533831 AGGAAATATCTGACAAAAACCTATGTT 57.466 29.630 0.00 0.00 35.82 2.71
4739 5489 9.914834 ACTGTTGGGTATACAATGTGTAAATAT 57.085 29.630 5.01 0.00 36.31 1.28
4740 5490 9.742144 AACTGTTGGGTATACAATGTGTAAATA 57.258 29.630 5.01 0.00 36.31 1.40
4741 5491 8.644374 AACTGTTGGGTATACAATGTGTAAAT 57.356 30.769 5.01 0.00 36.31 1.40
4742 5492 7.940137 AGAACTGTTGGGTATACAATGTGTAAA 59.060 33.333 5.01 0.00 36.31 2.01
4748 5503 4.699735 TGCAGAACTGTTGGGTATACAATG 59.300 41.667 5.01 0.00 32.24 2.82
4787 5543 6.513180 AGAATGTGATGGATTGATTGCATTC 58.487 36.000 1.55 1.55 36.38 2.67
4833 5590 5.735766 ACATAAGGAGAACCAGTAAAGAGC 58.264 41.667 0.00 0.00 38.94 4.09
4840 5597 4.351111 AGGAACAACATAAGGAGAACCAGT 59.649 41.667 0.00 0.00 38.94 4.00
4844 5601 5.562890 GCACAAGGAACAACATAAGGAGAAC 60.563 44.000 0.00 0.00 0.00 3.01
4845 5602 4.518970 GCACAAGGAACAACATAAGGAGAA 59.481 41.667 0.00 0.00 0.00 2.87
4846 5603 4.072131 GCACAAGGAACAACATAAGGAGA 58.928 43.478 0.00 0.00 0.00 3.71
4847 5604 3.191371 GGCACAAGGAACAACATAAGGAG 59.809 47.826 0.00 0.00 0.00 3.69
4848 5605 3.153919 GGCACAAGGAACAACATAAGGA 58.846 45.455 0.00 0.00 0.00 3.36
4849 5606 3.157087 AGGCACAAGGAACAACATAAGG 58.843 45.455 0.00 0.00 0.00 2.69
4850 5607 4.520492 AGAAGGCACAAGGAACAACATAAG 59.480 41.667 0.00 0.00 0.00 1.73
4851 5608 4.469657 AGAAGGCACAAGGAACAACATAA 58.530 39.130 0.00 0.00 0.00 1.90
4852 5609 4.098914 AGAAGGCACAAGGAACAACATA 57.901 40.909 0.00 0.00 0.00 2.29
4853 5610 2.949447 AGAAGGCACAAGGAACAACAT 58.051 42.857 0.00 0.00 0.00 2.71
4854 5611 2.426738 CAAGAAGGCACAAGGAACAACA 59.573 45.455 0.00 0.00 0.00 3.33
4855 5612 2.427095 ACAAGAAGGCACAAGGAACAAC 59.573 45.455 0.00 0.00 0.00 3.32
4856 5613 2.426738 CACAAGAAGGCACAAGGAACAA 59.573 45.455 0.00 0.00 0.00 2.83
4857 5614 2.023673 CACAAGAAGGCACAAGGAACA 58.976 47.619 0.00 0.00 0.00 3.18
4858 5615 2.024414 ACACAAGAAGGCACAAGGAAC 58.976 47.619 0.00 0.00 0.00 3.62
4859 5616 2.023673 CACACAAGAAGGCACAAGGAA 58.976 47.619 0.00 0.00 0.00 3.36
4860 5617 1.064758 ACACACAAGAAGGCACAAGGA 60.065 47.619 0.00 0.00 0.00 3.36
4861 5618 1.066002 CACACACAAGAAGGCACAAGG 59.934 52.381 0.00 0.00 0.00 3.61
4862 5619 1.745087 ACACACACAAGAAGGCACAAG 59.255 47.619 0.00 0.00 0.00 3.16
4863 5620 1.832883 ACACACACAAGAAGGCACAA 58.167 45.000 0.00 0.00 0.00 3.33
4864 5621 1.472082 CAACACACACAAGAAGGCACA 59.528 47.619 0.00 0.00 0.00 4.57
4879 5636 3.665745 ACAAAAGATGGCATCCAACAC 57.334 42.857 23.33 0.00 36.95 3.32
4902 5659 3.581332 ACAAGTAATTCTGAACGGAGGGA 59.419 43.478 0.00 0.00 0.00 4.20
4903 5660 3.933332 GACAAGTAATTCTGAACGGAGGG 59.067 47.826 0.00 0.00 0.00 4.30
4904 5661 4.822026 AGACAAGTAATTCTGAACGGAGG 58.178 43.478 0.00 0.00 0.00 4.30
4905 5662 4.559251 CGAGACAAGTAATTCTGAACGGAG 59.441 45.833 0.00 0.00 0.00 4.63
4906 5663 4.216902 TCGAGACAAGTAATTCTGAACGGA 59.783 41.667 0.00 0.00 0.00 4.69
4907 5664 4.482386 TCGAGACAAGTAATTCTGAACGG 58.518 43.478 0.00 0.00 0.00 4.44
4908 5665 6.448053 TTTCGAGACAAGTAATTCTGAACG 57.552 37.500 0.00 0.00 0.00 3.95
4909 5666 7.746475 CCATTTTCGAGACAAGTAATTCTGAAC 59.254 37.037 0.00 0.00 0.00 3.18
4910 5667 7.659799 TCCATTTTCGAGACAAGTAATTCTGAA 59.340 33.333 0.00 0.00 0.00 3.02
4911 5668 7.158697 TCCATTTTCGAGACAAGTAATTCTGA 58.841 34.615 0.00 0.00 0.00 3.27
4912 5669 7.364522 TCCATTTTCGAGACAAGTAATTCTG 57.635 36.000 0.00 0.00 0.00 3.02
4913 5670 7.607991 ACATCCATTTTCGAGACAAGTAATTCT 59.392 33.333 0.00 0.00 0.00 2.40
4914 5671 7.752695 ACATCCATTTTCGAGACAAGTAATTC 58.247 34.615 0.00 0.00 0.00 2.17
4915 5672 7.687941 ACATCCATTTTCGAGACAAGTAATT 57.312 32.000 0.00 0.00 0.00 1.40
4916 5673 8.964476 ATACATCCATTTTCGAGACAAGTAAT 57.036 30.769 0.00 0.00 0.00 1.89
4917 5674 8.258007 AGATACATCCATTTTCGAGACAAGTAA 58.742 33.333 0.00 0.00 0.00 2.24
4918 5675 7.782049 AGATACATCCATTTTCGAGACAAGTA 58.218 34.615 0.00 0.00 0.00 2.24
4919 5676 6.644347 AGATACATCCATTTTCGAGACAAGT 58.356 36.000 0.00 0.00 0.00 3.16
4920 5677 8.138074 TCTAGATACATCCATTTTCGAGACAAG 58.862 37.037 0.00 0.00 0.00 3.16
4921 5678 8.007405 TCTAGATACATCCATTTTCGAGACAA 57.993 34.615 0.00 0.00 0.00 3.18
4922 5679 7.582667 TCTAGATACATCCATTTTCGAGACA 57.417 36.000 0.00 0.00 0.00 3.41
4923 5680 8.085296 ACATCTAGATACATCCATTTTCGAGAC 58.915 37.037 4.54 0.00 0.00 3.36
4924 5681 8.183104 ACATCTAGATACATCCATTTTCGAGA 57.817 34.615 4.54 0.00 0.00 4.04
4951 5708 9.542462 CGGAAATGGATGTATCTAGAACTAAAA 57.458 33.333 0.00 0.00 0.00 1.52
4952 5709 8.920174 TCGGAAATGGATGTATCTAGAACTAAA 58.080 33.333 0.00 0.00 0.00 1.85
4953 5710 8.473358 TCGGAAATGGATGTATCTAGAACTAA 57.527 34.615 0.00 0.00 0.00 2.24
4954 5711 7.942894 TCTCGGAAATGGATGTATCTAGAACTA 59.057 37.037 0.00 0.00 0.00 2.24
4955 5712 6.778069 TCTCGGAAATGGATGTATCTAGAACT 59.222 38.462 0.00 0.00 0.00 3.01
4956 5713 6.864165 GTCTCGGAAATGGATGTATCTAGAAC 59.136 42.308 0.00 0.00 0.00 3.01
4957 5714 6.549736 TGTCTCGGAAATGGATGTATCTAGAA 59.450 38.462 0.00 0.00 0.00 2.10
4958 5715 6.068670 TGTCTCGGAAATGGATGTATCTAGA 58.931 40.000 0.00 0.00 0.00 2.43
4959 5716 6.332735 TGTCTCGGAAATGGATGTATCTAG 57.667 41.667 0.00 0.00 0.00 2.43
4960 5717 6.323996 ACTTGTCTCGGAAATGGATGTATCTA 59.676 38.462 0.00 0.00 0.00 1.98
4961 5718 5.129485 ACTTGTCTCGGAAATGGATGTATCT 59.871 40.000 0.00 0.00 0.00 1.98
4962 5719 5.360591 ACTTGTCTCGGAAATGGATGTATC 58.639 41.667 0.00 0.00 0.00 2.24
4963 5720 5.359194 ACTTGTCTCGGAAATGGATGTAT 57.641 39.130 0.00 0.00 0.00 2.29
4964 5721 4.819105 ACTTGTCTCGGAAATGGATGTA 57.181 40.909 0.00 0.00 0.00 2.29
4965 5722 3.703001 ACTTGTCTCGGAAATGGATGT 57.297 42.857 0.00 0.00 0.00 3.06
4966 5723 6.238484 GGAATTACTTGTCTCGGAAATGGATG 60.238 42.308 0.00 0.00 0.00 3.51
4967 5724 5.823045 GGAATTACTTGTCTCGGAAATGGAT 59.177 40.000 0.00 0.00 0.00 3.41
4968 5725 5.183228 GGAATTACTTGTCTCGGAAATGGA 58.817 41.667 0.00 0.00 0.00 3.41
4969 5726 4.034048 CGGAATTACTTGTCTCGGAAATGG 59.966 45.833 0.00 0.00 0.00 3.16
4970 5727 4.868171 TCGGAATTACTTGTCTCGGAAATG 59.132 41.667 0.00 0.00 0.00 2.32
4971 5728 5.080969 TCGGAATTACTTGTCTCGGAAAT 57.919 39.130 0.00 0.00 0.00 2.17
4972 5729 4.524316 TCGGAATTACTTGTCTCGGAAA 57.476 40.909 0.00 0.00 0.00 3.13
4973 5730 4.240096 GTTCGGAATTACTTGTCTCGGAA 58.760 43.478 0.00 0.00 0.00 4.30
4974 5731 3.671433 CGTTCGGAATTACTTGTCTCGGA 60.671 47.826 0.00 0.00 0.00 4.55
4975 5732 2.597305 CGTTCGGAATTACTTGTCTCGG 59.403 50.000 0.00 0.00 0.00 4.63
4976 5733 2.597305 CCGTTCGGAATTACTTGTCTCG 59.403 50.000 5.19 0.00 0.00 4.04
4977 5734 3.841643 TCCGTTCGGAATTACTTGTCTC 58.158 45.455 11.66 0.00 0.00 3.36
4978 5735 3.368116 CCTCCGTTCGGAATTACTTGTCT 60.368 47.826 14.79 0.00 33.41 3.41
4979 5736 2.928116 CCTCCGTTCGGAATTACTTGTC 59.072 50.000 14.79 0.00 33.41 3.18
4980 5737 2.354403 CCCTCCGTTCGGAATTACTTGT 60.354 50.000 14.79 0.00 33.41 3.16
4981 5738 2.093869 TCCCTCCGTTCGGAATTACTTG 60.094 50.000 14.79 1.97 33.41 3.16
4982 5739 2.167900 CTCCCTCCGTTCGGAATTACTT 59.832 50.000 14.79 0.00 33.41 2.24
4983 5740 1.755380 CTCCCTCCGTTCGGAATTACT 59.245 52.381 14.79 0.00 33.41 2.24
4984 5741 1.479730 ACTCCCTCCGTTCGGAATTAC 59.520 52.381 14.79 0.00 33.41 1.89
4985 5742 1.856629 ACTCCCTCCGTTCGGAATTA 58.143 50.000 14.79 2.82 33.41 1.40
4986 5743 1.479730 GTACTCCCTCCGTTCGGAATT 59.520 52.381 14.79 0.00 33.41 2.17
4987 5744 1.109609 GTACTCCCTCCGTTCGGAAT 58.890 55.000 14.79 2.09 33.41 3.01
4988 5745 0.967380 GGTACTCCCTCCGTTCGGAA 60.967 60.000 14.79 0.04 33.41 4.30
4989 5746 1.379044 GGTACTCCCTCCGTTCGGA 60.379 63.158 13.34 13.34 0.00 4.55
4990 5747 1.379576 AGGTACTCCCTCCGTTCGG 60.380 63.158 4.74 4.74 40.71 4.30
4991 5748 0.679002 TCAGGTACTCCCTCCGTTCG 60.679 60.000 0.00 0.00 43.86 3.95
4992 5749 1.409427 CATCAGGTACTCCCTCCGTTC 59.591 57.143 0.00 0.00 43.86 3.95
4993 5750 1.273098 ACATCAGGTACTCCCTCCGTT 60.273 52.381 0.00 0.00 43.86 4.44
4994 5751 0.335361 ACATCAGGTACTCCCTCCGT 59.665 55.000 0.00 0.00 43.86 4.69
4995 5752 0.747255 CACATCAGGTACTCCCTCCG 59.253 60.000 0.00 0.00 43.86 4.63
4996 5753 1.123928 CCACATCAGGTACTCCCTCC 58.876 60.000 0.00 0.00 43.86 4.30
4997 5754 1.482593 CACCACATCAGGTACTCCCTC 59.517 57.143 0.00 0.00 43.86 4.30
4999 5756 1.276622 ACACCACATCAGGTACTCCC 58.723 55.000 0.00 0.00 40.77 4.30
5000 5757 3.961408 AGATACACCACATCAGGTACTCC 59.039 47.826 0.00 0.00 40.77 3.85
5001 5758 5.599999 AAGATACACCACATCAGGTACTC 57.400 43.478 0.00 0.00 40.77 2.59
5002 5759 6.195700 AGTAAGATACACCACATCAGGTACT 58.804 40.000 0.00 0.00 40.77 2.73
5003 5760 6.321690 AGAGTAAGATACACCACATCAGGTAC 59.678 42.308 0.00 0.00 40.77 3.34
5004 5761 6.432581 AGAGTAAGATACACCACATCAGGTA 58.567 40.000 0.00 0.00 40.77 3.08
5005 5762 5.273208 AGAGTAAGATACACCACATCAGGT 58.727 41.667 0.00 0.00 44.48 4.00
5006 5763 5.860941 AGAGTAAGATACACCACATCAGG 57.139 43.478 0.00 0.00 0.00 3.86
5038 5795 1.185315 CCGGCCTGAACCATTTTCAT 58.815 50.000 0.00 0.00 0.00 2.57
5162 5929 5.107453 CCGAAGTAAATCAGGAACGATATGC 60.107 44.000 0.00 0.00 0.00 3.14
5165 5932 4.098960 AGCCGAAGTAAATCAGGAACGATA 59.901 41.667 0.00 0.00 0.00 2.92
5169 5936 3.125316 CACAGCCGAAGTAAATCAGGAAC 59.875 47.826 0.00 0.00 0.00 3.62
5170 5937 3.334691 CACAGCCGAAGTAAATCAGGAA 58.665 45.455 0.00 0.00 0.00 3.36
5171 5938 2.354704 CCACAGCCGAAGTAAATCAGGA 60.355 50.000 0.00 0.00 0.00 3.86
5172 5939 2.009774 CCACAGCCGAAGTAAATCAGG 58.990 52.381 0.00 0.00 0.00 3.86
5173 5940 2.699954 ACCACAGCCGAAGTAAATCAG 58.300 47.619 0.00 0.00 0.00 2.90
5174 5941 2.851263 ACCACAGCCGAAGTAAATCA 57.149 45.000 0.00 0.00 0.00 2.57
5175 5942 4.501071 TCTTACCACAGCCGAAGTAAATC 58.499 43.478 0.00 0.00 0.00 2.17
5232 6051 0.620556 AGCCATCCATTGAAGTCCGT 59.379 50.000 0.00 0.00 0.00 4.69
5235 6054 5.643379 TTTTGTAGCCATCCATTGAAGTC 57.357 39.130 0.00 0.00 0.00 3.01
5259 6078 3.302480 GCGATTTGTATGTCTGTAAGCCG 60.302 47.826 0.00 0.00 0.00 5.52
5262 6081 6.164408 TGTTGCGATTTGTATGTCTGTAAG 57.836 37.500 0.00 0.00 0.00 2.34
5301 6122 5.822519 TGCAAACTTGTGATGTTACTCTTCT 59.177 36.000 0.00 0.00 0.00 2.85
5302 6123 6.060028 TGCAAACTTGTGATGTTACTCTTC 57.940 37.500 0.00 0.00 0.00 2.87
5304 6125 6.294176 GGATTGCAAACTTGTGATGTTACTCT 60.294 38.462 1.71 0.00 0.00 3.24
5305 6126 5.858581 GGATTGCAAACTTGTGATGTTACTC 59.141 40.000 1.71 0.00 0.00 2.59
5307 6128 5.527951 TGGATTGCAAACTTGTGATGTTAC 58.472 37.500 1.71 0.00 0.00 2.50
5308 6129 5.781210 TGGATTGCAAACTTGTGATGTTA 57.219 34.783 1.71 0.00 0.00 2.41
5309 6130 4.669206 TGGATTGCAAACTTGTGATGTT 57.331 36.364 1.71 0.00 0.00 2.71
5318 6160 0.532115 GCCCGATTGGATTGCAAACT 59.468 50.000 1.71 0.00 37.49 2.66
5493 6335 3.371063 GTGGAGGACGACGAGGCA 61.371 66.667 0.00 0.00 0.00 4.75


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.