Multiple sequence alignment - TraesCS4B01G063200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G063200 chr4B 100.000 5874 0 0 1 5874 55323972 55318099 0.000000e+00 10848.0
1 TraesCS4B01G063200 chr4B 95.732 164 7 0 3662 3825 535078190 535078353 1.260000e-66 265.0
2 TraesCS4B01G063200 chr4D 93.713 2036 88 25 844 2864 37940757 37938747 0.000000e+00 3014.0
3 TraesCS4B01G063200 chr4D 91.472 1196 52 19 4706 5874 37936499 37935327 0.000000e+00 1598.0
4 TraesCS4B01G063200 chr4D 87.486 919 39 22 3807 4707 37937617 37936757 0.000000e+00 990.0
5 TraesCS4B01G063200 chr4D 88.713 443 41 4 3229 3663 37938029 37937588 3.120000e-147 532.0
6 TraesCS4B01G063200 chr4D 96.933 163 5 0 3662 3824 311161236 311161074 2.090000e-69 274.0
7 TraesCS4B01G063200 chr4D 100.000 33 0 0 3253 3285 37938036 37938004 1.770000e-05 62.1
8 TraesCS4B01G063200 chr4A 88.207 1433 108 25 3807 5218 564164947 564163555 0.000000e+00 1653.0
9 TraesCS4B01G063200 chr4A 94.434 1060 46 5 844 1893 564167763 564166707 0.000000e+00 1618.0
10 TraesCS4B01G063200 chr4A 91.717 495 30 7 2098 2585 564166477 564165987 0.000000e+00 676.0
11 TraesCS4B01G063200 chr4A 88.564 411 42 5 3254 3663 564165325 564164919 1.470000e-135 494.0
12 TraesCS4B01G063200 chr4A 88.338 343 39 1 1308 1649 113808351 113808693 1.520000e-110 411.0
13 TraesCS4B01G063200 chr4A 93.846 195 11 1 2675 2869 564165981 564165788 5.760000e-75 292.0
14 TraesCS4B01G063200 chr4A 91.566 166 11 2 5585 5747 564160813 564160648 5.920000e-55 226.0
15 TraesCS4B01G063200 chr4A 95.238 126 6 0 1974 2099 564166707 564166582 3.590000e-47 200.0
16 TraesCS4B01G063200 chr4A 90.476 126 10 2 5749 5874 564160319 564160196 1.310000e-36 165.0
17 TraesCS4B01G063200 chr4A 85.417 96 13 1 1274 1368 477891302 477891397 1.350000e-16 99.0
18 TraesCS4B01G063200 chr4A 92.982 57 4 0 5439 5495 564163358 564163302 3.770000e-12 84.2
19 TraesCS4B01G063200 chr4A 100.000 33 0 0 5533 5565 564160845 564160813 1.770000e-05 62.1
20 TraesCS4B01G063200 chr5B 97.619 840 13 4 1 833 314279394 314278555 0.000000e+00 1434.0
21 TraesCS4B01G063200 chr5B 90.508 295 23 5 1358 1649 680720935 680720643 9.230000e-103 385.0
22 TraesCS4B01G063200 chr5B 89.831 295 25 5 1358 1649 436218405 436218697 2.000000e-99 374.0
23 TraesCS4B01G063200 chr5B 90.306 196 13 6 2363 2556 436219435 436219626 9.770000e-63 252.0
24 TraesCS4B01G063200 chr5B 87.374 198 15 5 2364 2559 680719830 680719641 9.910000e-53 219.0
25 TraesCS4B01G063200 chr5B 92.908 141 10 0 3684 3824 518672871 518673011 7.720000e-49 206.0
26 TraesCS4B01G063200 chr2B 97.384 841 17 3 1 839 72978730 72979567 0.000000e+00 1426.0
27 TraesCS4B01G063200 chr2B 92.562 121 9 0 3652 3772 744384948 744384828 2.180000e-39 174.0
28 TraesCS4B01G063200 chr2B 82.500 120 14 6 2963 3077 285051681 285051798 1.350000e-16 99.0
29 TraesCS4B01G063200 chr7A 91.746 836 53 9 2 833 728965251 728964428 0.000000e+00 1147.0
30 TraesCS4B01G063200 chr7A 89.524 840 61 11 2 833 492420550 492419730 0.000000e+00 1038.0
31 TraesCS4B01G063200 chr7A 88.070 855 57 13 2 848 690408044 690408861 0.000000e+00 972.0
32 TraesCS4B01G063200 chr7A 89.492 295 26 5 1358 1649 686952018 686951726 9.300000e-98 368.0
33 TraesCS4B01G063200 chr7A 87.374 198 22 2 2363 2559 686950911 686950716 2.130000e-54 224.0
34 TraesCS4B01G063200 chr7A 91.489 141 12 0 3684 3824 678005121 678004981 1.670000e-45 195.0
35 TraesCS4B01G063200 chr1A 90.141 284 24 4 1368 1649 264985992 264985711 3.340000e-97 366.0
36 TraesCS4B01G063200 chr1A 86.432 199 23 4 2363 2559 264984931 264984735 1.280000e-51 215.0
37 TraesCS4B01G063200 chr1A 82.072 251 40 4 585 833 144563475 144563722 5.960000e-50 209.0
38 TraesCS4B01G063200 chr1A 83.333 96 15 1 1274 1368 550333174 550333079 2.920000e-13 87.9
39 TraesCS4B01G063200 chr3A 88.851 296 26 6 1358 1649 643161736 643161444 2.010000e-94 357.0
40 TraesCS4B01G063200 chr3A 88.750 160 18 0 3662 3821 561060993 561061152 4.640000e-46 196.0
41 TraesCS4B01G063200 chr3A 79.078 282 43 12 2955 3230 642677365 642677636 4.680000e-41 180.0
42 TraesCS4B01G063200 chr6A 87.162 296 31 6 1358 1649 126955484 126955192 4.390000e-86 329.0
43 TraesCS4B01G063200 chr6A 95.732 164 7 0 3661 3824 411088874 411089037 1.260000e-66 265.0
44 TraesCS4B01G063200 chr6A 90.206 194 16 2 2367 2559 126954404 126954213 3.510000e-62 250.0
45 TraesCS4B01G063200 chr7B 96.000 175 7 0 659 833 60618955 60618781 9.630000e-73 285.0
46 TraesCS4B01G063200 chr7B 81.250 96 17 1 1274 1368 630173656 630173561 6.310000e-10 76.8
47 TraesCS4B01G063200 chr1B 89.796 196 15 4 2363 2556 601415217 601415409 4.550000e-61 246.0
48 TraesCS4B01G063200 chr1B 89.524 105 11 0 2397 2501 401001841 401001737 3.690000e-27 134.0
49 TraesCS4B01G063200 chr2A 93.662 142 9 0 3684 3825 48324852 48324711 4.610000e-51 213.0
50 TraesCS4B01G063200 chr2A 83.333 96 15 1 1274 1368 56417821 56417726 2.920000e-13 87.9
51 TraesCS4B01G063200 chr5A 80.899 267 43 8 585 846 598352889 598353152 2.780000e-48 204.0
52 TraesCS4B01G063200 chr5A 91.667 144 12 0 3682 3825 406872509 406872366 3.590000e-47 200.0
53 TraesCS4B01G063200 chr6D 80.899 267 41 7 585 847 205822655 205822395 9.980000e-48 202.0
54 TraesCS4B01G063200 chrUn 91.489 141 12 0 3684 3824 19493392 19493252 1.670000e-45 195.0
55 TraesCS4B01G063200 chrUn 87.097 186 3 2 3660 3824 134241675 134241860 2.160000e-44 191.0
56 TraesCS4B01G063200 chrUn 100.000 77 0 0 1 77 479414867 479414943 6.140000e-30 143.0
57 TraesCS4B01G063200 chr2D 87.166 187 3 2 3660 3825 473705732 473705918 6.010000e-45 193.0
58 TraesCS4B01G063200 chr2D 86.885 183 4 4 3662 3824 236136432 236136250 2.790000e-43 187.0
59 TraesCS4B01G063200 chr3D 95.536 112 5 0 3660 3771 276434623 276434512 4.680000e-41 180.0
60 TraesCS4B01G063200 chr6B 94.118 51 2 1 281 330 172277278 172277328 6.310000e-10 76.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G063200 chr4B 55318099 55323972 5873 True 10848.00 10848 100.0000 1 5874 1 chr4B.!!$R1 5873
1 TraesCS4B01G063200 chr4D 37935327 37940757 5430 True 1239.22 3014 92.2768 844 5874 5 chr4D.!!$R2 5030
2 TraesCS4B01G063200 chr4A 564160196 564167763 7567 True 547.03 1653 92.7030 844 5874 10 chr4A.!!$R1 5030
3 TraesCS4B01G063200 chr5B 314278555 314279394 839 True 1434.00 1434 97.6190 1 833 1 chr5B.!!$R1 832
4 TraesCS4B01G063200 chr5B 436218405 436219626 1221 False 313.00 374 90.0685 1358 2556 2 chr5B.!!$F2 1198
5 TraesCS4B01G063200 chr5B 680719641 680720935 1294 True 302.00 385 88.9410 1358 2559 2 chr5B.!!$R2 1201
6 TraesCS4B01G063200 chr2B 72978730 72979567 837 False 1426.00 1426 97.3840 1 839 1 chr2B.!!$F1 838
7 TraesCS4B01G063200 chr7A 728964428 728965251 823 True 1147.00 1147 91.7460 2 833 1 chr7A.!!$R3 831
8 TraesCS4B01G063200 chr7A 492419730 492420550 820 True 1038.00 1038 89.5240 2 833 1 chr7A.!!$R1 831
9 TraesCS4B01G063200 chr7A 690408044 690408861 817 False 972.00 972 88.0700 2 848 1 chr7A.!!$F1 846
10 TraesCS4B01G063200 chr7A 686950716 686952018 1302 True 296.00 368 88.4330 1358 2559 2 chr7A.!!$R4 1201
11 TraesCS4B01G063200 chr1A 264984735 264985992 1257 True 290.50 366 88.2865 1368 2559 2 chr1A.!!$R2 1191
12 TraesCS4B01G063200 chr6A 126954213 126955484 1271 True 289.50 329 88.6840 1358 2559 2 chr6A.!!$R1 1201

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
210 212 0.036732 AGGCATGTGTTCATCACCGT 59.963 50.000 0.00 0.0 45.61 4.83 F
1136 1161 1.228894 AGTGGCTCGAGGAGGACAA 60.229 57.895 15.58 0.0 0.00 3.18 F
2908 3295 0.259938 GGCTCCCCACCTGAATTGAT 59.740 55.000 0.00 0.0 0.00 2.57 F
3703 4468 0.028505 GTCGCTGTATAGTCGCCGAA 59.971 55.000 0.00 0.0 0.00 4.30 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1176 1201 0.037303 CAGGGAGGCAAGCAAGAGAA 59.963 55.0 0.00 0.0 0.0 2.87 R
3055 3644 0.250989 TCGGATTTGGGGGTGTGTTC 60.251 55.0 0.00 0.0 0.0 3.18 R
3979 4752 0.036010 CGGACTGGATTTGAGGCTGT 60.036 55.0 0.00 0.0 0.0 4.40 R
5059 6114 0.036765 ACAGGCGCCAAAATACTCGA 60.037 50.0 31.54 0.0 0.0 4.04 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
87 89 2.356278 GGCAACAGGATGGAGGCA 59.644 61.111 0.00 0.00 43.62 4.75
210 212 0.036732 AGGCATGTGTTCATCACCGT 59.963 50.000 0.00 0.00 45.61 4.83
371 379 3.791586 GAGGAGGGCTCTGGGCAC 61.792 72.222 0.21 0.00 46.51 5.01
725 742 9.803315 GACAGATTATTGATGTAATATAGGCGA 57.197 33.333 0.00 0.00 31.57 5.54
806 823 2.034179 GTGTGGCTTTAGACAAACACCC 59.966 50.000 0.87 0.00 41.04 4.61
1062 1087 2.394563 GGCGCTGCTTCTCTTCACC 61.395 63.158 7.64 0.00 0.00 4.02
1136 1161 1.228894 AGTGGCTCGAGGAGGACAA 60.229 57.895 15.58 0.00 0.00 3.18
1179 1204 2.593436 CACCAAACCGCCCGTTCT 60.593 61.111 0.00 0.00 31.78 3.01
1236 1264 3.834489 AGGACTTAGATGTGGATGCTG 57.166 47.619 0.00 0.00 0.00 4.41
1254 1282 2.351738 GCTGATTTTAGCACGCCTGTTT 60.352 45.455 0.00 0.00 43.17 2.83
1282 1310 1.153686 GGGTTCGCCGTCTAGGTTC 60.154 63.158 0.00 0.00 43.70 3.62
1290 1318 1.676014 GCCGTCTAGGTTCAAGCATGT 60.676 52.381 0.00 0.00 43.70 3.21
1307 1335 7.386573 TCAAGCATGTTAGTCGTTTTAGAATCA 59.613 33.333 0.00 0.00 0.00 2.57
1318 1346 7.173390 AGTCGTTTTAGAATCAGGGAGAAAAAG 59.827 37.037 0.00 0.00 0.00 2.27
1319 1347 6.996282 TCGTTTTAGAATCAGGGAGAAAAAGT 59.004 34.615 0.00 0.00 0.00 2.66
1320 1348 8.152246 TCGTTTTAGAATCAGGGAGAAAAAGTA 58.848 33.333 0.00 0.00 0.00 2.24
1321 1349 8.443937 CGTTTTAGAATCAGGGAGAAAAAGTAG 58.556 37.037 0.00 0.00 0.00 2.57
1322 1350 9.503399 GTTTTAGAATCAGGGAGAAAAAGTAGA 57.497 33.333 0.00 0.00 0.00 2.59
1324 1352 9.672673 TTTAGAATCAGGGAGAAAAAGTAGATG 57.327 33.333 0.00 0.00 0.00 2.90
1325 1353 7.264294 AGAATCAGGGAGAAAAAGTAGATGT 57.736 36.000 0.00 0.00 0.00 3.06
1407 1436 7.488322 TCTTAACTAATTTGCAGCAACTGTTT 58.512 30.769 7.54 2.41 33.43 2.83
1624 1654 8.150296 AGAAGTTCAGGGTTAAATTTCCAAATG 58.850 33.333 5.50 0.00 0.00 2.32
1761 1823 5.573219 TGATTGGCCTGATATATCCAAAGG 58.427 41.667 10.25 11.00 41.34 3.11
1927 2060 8.438676 AATAGCTGTCTGATTAACATGTTACC 57.561 34.615 17.85 12.82 0.00 2.85
1941 2074 6.121776 ACATGTTACCCACTGTCTCATTAA 57.878 37.500 0.00 0.00 0.00 1.40
1984 2119 4.065789 GCTAAAACAACTGGTACTCTGCT 58.934 43.478 0.00 0.00 0.00 4.24
2113 2470 8.236586 TCAAATGTCATATTACTCTTGCAACAC 58.763 33.333 0.00 0.00 0.00 3.32
2114 2471 6.683974 ATGTCATATTACTCTTGCAACACC 57.316 37.500 0.00 0.00 0.00 4.16
2197 2554 7.971004 AAGAAACTGTGTTTCGAGAAATTTC 57.029 32.000 10.33 10.33 33.86 2.17
2200 2557 6.677781 AACTGTGTTTCGAGAAATTTCTGA 57.322 33.333 25.12 18.03 37.73 3.27
2398 2777 8.472413 TGTAGGAAAAGTATGTATGACTGTACC 58.528 37.037 0.00 0.00 0.00 3.34
2399 2778 7.490657 AGGAAAAGTATGTATGACTGTACCA 57.509 36.000 0.00 0.00 0.00 3.25
2426 2805 8.507524 ACACTTTGGCTATCTTAAACCTATTC 57.492 34.615 0.00 0.00 0.00 1.75
2744 3131 3.035055 ACCCATGATTGCATTCCATCA 57.965 42.857 6.16 3.81 30.68 3.07
2760 3147 4.610333 TCCATCACTGAGGCTAGTTCTTA 58.390 43.478 0.00 0.00 0.00 2.10
2765 3152 4.702612 TCACTGAGGCTAGTTCTTACTCTG 59.297 45.833 0.00 0.00 35.78 3.35
2782 3169 9.688592 TCTTACTCTGTTTTAAGCTACTTGTAC 57.311 33.333 0.00 0.00 0.00 2.90
2797 3184 8.460428 AGCTACTTGTACATCAACTCTACTTAC 58.540 37.037 0.00 0.00 32.18 2.34
2905 3292 3.100111 GGGCTCCCCACCTGAATT 58.900 61.111 0.00 0.00 44.65 2.17
2906 3293 1.380380 GGGCTCCCCACCTGAATTG 60.380 63.158 0.00 0.00 44.65 2.32
2907 3294 1.691219 GGCTCCCCACCTGAATTGA 59.309 57.895 0.00 0.00 0.00 2.57
2908 3295 0.259938 GGCTCCCCACCTGAATTGAT 59.740 55.000 0.00 0.00 0.00 2.57
2909 3296 1.685148 GCTCCCCACCTGAATTGATC 58.315 55.000 0.00 0.00 0.00 2.92
2910 3297 1.213926 GCTCCCCACCTGAATTGATCT 59.786 52.381 0.00 0.00 0.00 2.75
2911 3298 2.747799 GCTCCCCACCTGAATTGATCTC 60.748 54.545 0.00 0.00 0.00 2.75
2912 3299 2.776536 CTCCCCACCTGAATTGATCTCT 59.223 50.000 0.00 0.00 0.00 3.10
2913 3300 3.192944 TCCCCACCTGAATTGATCTCTT 58.807 45.455 0.00 0.00 0.00 2.85
2914 3301 4.370776 TCCCCACCTGAATTGATCTCTTA 58.629 43.478 0.00 0.00 0.00 2.10
2915 3302 4.788075 TCCCCACCTGAATTGATCTCTTAA 59.212 41.667 0.00 0.00 0.00 1.85
2916 3303 5.252863 TCCCCACCTGAATTGATCTCTTAAA 59.747 40.000 0.00 0.00 0.00 1.52
2917 3304 5.591877 CCCCACCTGAATTGATCTCTTAAAG 59.408 44.000 0.00 0.00 0.00 1.85
2918 3305 6.418101 CCCACCTGAATTGATCTCTTAAAGA 58.582 40.000 0.00 0.00 38.72 2.52
2919 3306 6.886459 CCCACCTGAATTGATCTCTTAAAGAA 59.114 38.462 0.00 0.00 37.61 2.52
2920 3307 7.394359 CCCACCTGAATTGATCTCTTAAAGAAA 59.606 37.037 0.00 0.00 37.61 2.52
2921 3308 8.796475 CCACCTGAATTGATCTCTTAAAGAAAA 58.204 33.333 0.00 0.00 37.61 2.29
2930 3317 9.981114 TTGATCTCTTAAAGAAAATTTTGACCC 57.019 29.630 8.47 0.00 37.61 4.46
2942 3531 9.154632 AGAAAATTTTGACCCAGTTTATAAGGT 57.845 29.630 8.47 0.00 34.57 3.50
2948 3537 6.401047 TGACCCAGTTTATAAGGTAGATCG 57.599 41.667 0.00 0.00 31.10 3.69
2976 3565 2.672908 CAGACATGGCAGCCCAGA 59.327 61.111 9.64 0.00 46.24 3.86
2984 3573 3.139025 ACATGGCAGCCCAGATTATAAGT 59.861 43.478 9.64 0.00 46.24 2.24
2998 3587 9.403583 CCAGATTATAAGTAAAACTAGGCCAAA 57.596 33.333 5.01 0.00 0.00 3.28
3033 3622 2.416244 GAAGCCTCGTCGACCACACA 62.416 60.000 10.58 0.00 0.00 3.72
3074 3663 0.250989 GAACACACCCCCAAATCCGA 60.251 55.000 0.00 0.00 0.00 4.55
3077 3666 1.304134 ACACCCCCAAATCCGAAGC 60.304 57.895 0.00 0.00 0.00 3.86
3142 3731 1.270094 CGGGATGAACGCCTTATAGCA 60.270 52.381 0.00 0.00 0.00 3.49
3165 3754 1.090052 GCTACATGAGACAACCGCCC 61.090 60.000 0.00 0.00 0.00 6.13
3183 3772 1.078709 CCGCAGATCACAAACGATGT 58.921 50.000 0.00 0.00 45.34 3.06
3194 3783 2.552315 ACAAACGATGTGCCGAAAATCT 59.448 40.909 0.00 0.00 41.93 2.40
3224 3813 1.136984 CTCGACGTACCAGCCAGAC 59.863 63.158 0.00 0.00 0.00 3.51
3231 3987 1.982395 TACCAGCCAGACCGACCAG 60.982 63.158 0.00 0.00 0.00 4.00
3348 4107 1.925847 GAGAAGAGAGATTGCTGCACG 59.074 52.381 0.00 0.00 0.00 5.34
3385 4144 3.717294 CCACCGGACCCCAAGAGG 61.717 72.222 9.46 0.00 0.00 3.69
3415 4174 1.815421 GAGCACGATGACCCGCATT 60.815 57.895 0.00 0.00 37.34 3.56
3507 4267 3.123674 AGCTTTCGCTCGAATCGTT 57.876 47.368 1.52 0.00 45.15 3.85
3508 4268 0.716108 AGCTTTCGCTCGAATCGTTG 59.284 50.000 1.52 0.00 45.15 4.10
3509 4269 0.438830 GCTTTCGCTCGAATCGTTGT 59.561 50.000 1.52 0.00 33.79 3.32
3511 4271 1.059264 CTTTCGCTCGAATCGTTGTCC 59.941 52.381 1.52 0.00 33.79 4.02
3512 4272 0.038983 TTCGCTCGAATCGTTGTCCA 60.039 50.000 1.52 0.00 0.00 4.02
3515 4275 1.014044 GCTCGAATCGTTGTCCAGCA 61.014 55.000 1.52 0.00 0.00 4.41
3520 4280 1.873591 GAATCGTTGTCCAGCACAAGT 59.126 47.619 0.00 0.00 46.07 3.16
3531 4291 3.327757 TCCAGCACAAGTAACCAAGAGAT 59.672 43.478 0.00 0.00 0.00 2.75
3551 4311 4.341783 AGCAGCCGAAGCCTGCTT 62.342 61.111 9.87 3.62 45.28 3.91
3599 4364 2.869801 TCAACAAGAAAGTAGTGCCACG 59.130 45.455 0.00 0.00 0.00 4.94
3601 4366 1.414919 ACAAGAAAGTAGTGCCACGGA 59.585 47.619 0.00 0.00 0.00 4.69
3602 4367 2.038557 ACAAGAAAGTAGTGCCACGGAT 59.961 45.455 0.00 0.00 0.00 4.18
3603 4368 2.386661 AGAAAGTAGTGCCACGGATG 57.613 50.000 0.00 0.00 0.00 3.51
3653 4418 2.695147 CTGCCACCCAAAAACTTCTTCT 59.305 45.455 0.00 0.00 0.00 2.85
3663 4428 3.884037 AAACTTCTTCTCCACCACCAT 57.116 42.857 0.00 0.00 0.00 3.55
3665 4430 1.352352 ACTTCTTCTCCACCACCATGG 59.648 52.381 11.19 11.19 45.02 3.66
3676 4441 2.704725 CCACCATGGTTTTTGAGTCG 57.295 50.000 16.84 0.00 31.35 4.18
3677 4442 1.335872 CCACCATGGTTTTTGAGTCGC 60.336 52.381 16.84 0.00 31.35 5.19
3678 4443 1.608590 CACCATGGTTTTTGAGTCGCT 59.391 47.619 16.84 0.00 0.00 4.93
3679 4444 1.608590 ACCATGGTTTTTGAGTCGCTG 59.391 47.619 13.00 0.00 0.00 5.18
3680 4445 1.879380 CCATGGTTTTTGAGTCGCTGA 59.121 47.619 2.57 0.00 0.00 4.26
3681 4446 2.489329 CCATGGTTTTTGAGTCGCTGAT 59.511 45.455 2.57 0.00 0.00 2.90
3682 4447 3.057315 CCATGGTTTTTGAGTCGCTGATT 60.057 43.478 2.57 0.00 0.00 2.57
3683 4448 4.155826 CCATGGTTTTTGAGTCGCTGATTA 59.844 41.667 2.57 0.00 0.00 1.75
3684 4449 5.327091 CATGGTTTTTGAGTCGCTGATTAG 58.673 41.667 0.00 0.00 0.00 1.73
3685 4450 4.385825 TGGTTTTTGAGTCGCTGATTAGT 58.614 39.130 0.00 0.00 0.00 2.24
3686 4451 4.451096 TGGTTTTTGAGTCGCTGATTAGTC 59.549 41.667 0.00 0.00 0.00 2.59
3687 4452 4.434330 GGTTTTTGAGTCGCTGATTAGTCG 60.434 45.833 0.00 0.00 0.00 4.18
3688 4453 1.909376 TTGAGTCGCTGATTAGTCGC 58.091 50.000 0.00 0.00 0.00 5.19
3689 4454 1.095600 TGAGTCGCTGATTAGTCGCT 58.904 50.000 1.97 0.00 0.00 4.93
3690 4455 1.202188 TGAGTCGCTGATTAGTCGCTG 60.202 52.381 1.97 0.00 0.00 5.18
3691 4456 0.811915 AGTCGCTGATTAGTCGCTGT 59.188 50.000 1.97 0.00 0.00 4.40
3692 4457 2.014857 AGTCGCTGATTAGTCGCTGTA 58.985 47.619 1.97 0.00 0.00 2.74
3693 4458 2.619177 AGTCGCTGATTAGTCGCTGTAT 59.381 45.455 1.97 0.00 0.00 2.29
3694 4459 3.813724 AGTCGCTGATTAGTCGCTGTATA 59.186 43.478 1.97 0.00 0.00 1.47
3695 4460 4.083749 AGTCGCTGATTAGTCGCTGTATAG 60.084 45.833 1.97 0.00 0.00 1.31
3696 4461 3.813724 TCGCTGATTAGTCGCTGTATAGT 59.186 43.478 0.00 0.00 0.00 2.12
3697 4462 4.083961 TCGCTGATTAGTCGCTGTATAGTC 60.084 45.833 0.00 0.00 0.00 2.59
3698 4463 4.152526 GCTGATTAGTCGCTGTATAGTCG 58.847 47.826 0.00 0.00 0.00 4.18
3699 4464 4.143194 TGATTAGTCGCTGTATAGTCGC 57.857 45.455 0.00 0.00 0.00 5.19
3700 4465 3.058432 TGATTAGTCGCTGTATAGTCGCC 60.058 47.826 0.00 0.00 0.00 5.54
3701 4466 0.863799 TAGTCGCTGTATAGTCGCCG 59.136 55.000 0.00 0.00 0.00 6.46
3702 4467 0.812811 AGTCGCTGTATAGTCGCCGA 60.813 55.000 0.00 0.00 0.00 5.54
3703 4468 0.028505 GTCGCTGTATAGTCGCCGAA 59.971 55.000 0.00 0.00 0.00 4.30
3704 4469 0.949397 TCGCTGTATAGTCGCCGAAT 59.051 50.000 0.00 0.00 0.00 3.34
3705 4470 2.096069 GTCGCTGTATAGTCGCCGAATA 60.096 50.000 0.00 0.00 0.00 1.75
3706 4471 2.549329 TCGCTGTATAGTCGCCGAATAA 59.451 45.455 0.00 0.00 0.00 1.40
3707 4472 3.189910 TCGCTGTATAGTCGCCGAATAAT 59.810 43.478 0.00 0.00 0.00 1.28
3708 4473 3.542704 CGCTGTATAGTCGCCGAATAATC 59.457 47.826 0.00 0.00 0.00 1.75
3720 4485 3.651562 CGAATAATCGCCAAGTCGTTT 57.348 42.857 0.00 0.00 42.96 3.60
3721 4486 3.998522 CGAATAATCGCCAAGTCGTTTT 58.001 40.909 0.00 0.00 42.96 2.43
3722 4487 4.019867 CGAATAATCGCCAAGTCGTTTTC 58.980 43.478 0.00 0.00 42.96 2.29
3723 4488 4.340263 GAATAATCGCCAAGTCGTTTTCC 58.660 43.478 0.00 0.00 0.00 3.13
3724 4489 1.600023 AATCGCCAAGTCGTTTTCCA 58.400 45.000 0.00 0.00 0.00 3.53
3725 4490 1.600023 ATCGCCAAGTCGTTTTCCAA 58.400 45.000 0.00 0.00 0.00 3.53
3726 4491 1.380524 TCGCCAAGTCGTTTTCCAAA 58.619 45.000 0.00 0.00 0.00 3.28
3727 4492 1.743958 TCGCCAAGTCGTTTTCCAAAA 59.256 42.857 0.00 0.00 0.00 2.44
3728 4493 2.163815 TCGCCAAGTCGTTTTCCAAAAA 59.836 40.909 0.00 0.00 0.00 1.94
3729 4494 3.120041 CGCCAAGTCGTTTTCCAAAAAT 58.880 40.909 0.00 0.00 0.00 1.82
3730 4495 3.181575 CGCCAAGTCGTTTTCCAAAAATC 59.818 43.478 0.00 0.00 0.00 2.17
3731 4496 4.116238 GCCAAGTCGTTTTCCAAAAATCA 58.884 39.130 0.00 0.00 0.00 2.57
3732 4497 4.209080 GCCAAGTCGTTTTCCAAAAATCAG 59.791 41.667 0.00 0.00 0.00 2.90
3733 4498 4.744631 CCAAGTCGTTTTCCAAAAATCAGG 59.255 41.667 0.00 0.00 0.00 3.86
3734 4499 4.584327 AGTCGTTTTCCAAAAATCAGGG 57.416 40.909 0.00 0.00 0.00 4.45
3735 4500 3.057019 GTCGTTTTCCAAAAATCAGGGC 58.943 45.455 0.00 0.00 0.00 5.19
3736 4501 2.058057 CGTTTTCCAAAAATCAGGGCG 58.942 47.619 0.00 0.00 0.00 6.13
3737 4502 2.287909 CGTTTTCCAAAAATCAGGGCGA 60.288 45.455 0.00 0.00 0.00 5.54
3738 4503 3.057019 GTTTTCCAAAAATCAGGGCGAC 58.943 45.455 0.00 0.00 0.00 5.19
3739 4504 2.286365 TTCCAAAAATCAGGGCGACT 57.714 45.000 0.00 0.00 0.00 4.18
3740 4505 1.821216 TCCAAAAATCAGGGCGACTC 58.179 50.000 0.00 0.00 0.00 3.36
3741 4506 0.447801 CCAAAAATCAGGGCGACTCG 59.552 55.000 0.00 0.00 0.00 4.18
3752 4517 3.521534 GCGACTCGCGACTATACAA 57.478 52.632 3.71 0.00 44.55 2.41
3753 4518 1.110876 GCGACTCGCGACTATACAAC 58.889 55.000 3.71 0.00 44.55 3.32
3754 4519 1.373602 CGACTCGCGACTATACAACG 58.626 55.000 3.71 0.00 44.57 4.10
3755 4520 1.005662 CGACTCGCGACTATACAACGA 60.006 52.381 3.71 0.00 44.57 3.85
3756 4521 2.361407 GACTCGCGACTATACAACGAC 58.639 52.381 3.71 0.00 0.00 4.34
3757 4522 2.005451 ACTCGCGACTATACAACGACT 58.995 47.619 3.71 0.00 0.00 4.18
3758 4523 2.417933 ACTCGCGACTATACAACGACTT 59.582 45.455 3.71 0.00 0.00 3.01
3759 4524 3.120060 ACTCGCGACTATACAACGACTTT 60.120 43.478 3.71 0.00 0.00 2.66
3760 4525 3.419915 TCGCGACTATACAACGACTTTC 58.580 45.455 3.71 0.00 0.00 2.62
3761 4526 2.210485 CGCGACTATACAACGACTTTCG 59.790 50.000 0.00 0.00 46.93 3.46
3774 4539 3.316253 GACTTTCGTCGACTATACGCT 57.684 47.619 14.70 0.00 40.12 5.07
3775 4540 3.027710 GACTTTCGTCGACTATACGCTG 58.972 50.000 14.70 0.00 40.12 5.18
3776 4541 2.674852 ACTTTCGTCGACTATACGCTGA 59.325 45.455 14.70 0.00 40.12 4.26
3777 4542 3.242349 ACTTTCGTCGACTATACGCTGAG 60.242 47.826 14.70 2.28 40.12 3.35
3778 4543 0.580578 TCGTCGACTATACGCTGAGC 59.419 55.000 14.70 0.00 40.12 4.26
3779 4544 0.582482 CGTCGACTATACGCTGAGCT 59.418 55.000 14.70 0.00 33.04 4.09
3780 4545 1.003759 CGTCGACTATACGCTGAGCTT 60.004 52.381 14.70 0.00 33.04 3.74
3781 4546 2.641912 GTCGACTATACGCTGAGCTTC 58.358 52.381 8.70 0.00 0.00 3.86
3782 4547 2.031807 GTCGACTATACGCTGAGCTTCA 59.968 50.000 8.70 0.00 0.00 3.02
3783 4548 2.288186 TCGACTATACGCTGAGCTTCAG 59.712 50.000 1.78 8.34 46.90 3.02
3784 4549 2.603412 CGACTATACGCTGAGCTTCAGG 60.603 54.545 1.78 7.35 44.43 3.86
3816 4581 3.637714 GCCAAGTCGCGACTCAAA 58.362 55.556 39.19 0.00 41.58 2.69
3817 4582 1.938861 GCCAAGTCGCGACTCAAAA 59.061 52.632 39.19 0.00 41.58 2.44
3818 4583 0.306533 GCCAAGTCGCGACTCAAAAA 59.693 50.000 39.19 0.00 41.58 1.94
3819 4584 1.920272 GCCAAGTCGCGACTCAAAAAC 60.920 52.381 39.19 21.97 41.58 2.43
3820 4585 1.333791 CCAAGTCGCGACTCAAAAACC 60.334 52.381 39.19 10.95 41.58 3.27
3821 4586 1.597663 CAAGTCGCGACTCAAAAACCT 59.402 47.619 39.19 20.28 41.58 3.50
3822 4587 1.949465 AGTCGCGACTCAAAAACCTT 58.051 45.000 34.98 10.31 36.92 3.50
3823 4588 1.597663 AGTCGCGACTCAAAAACCTTG 59.402 47.619 34.98 0.00 36.92 3.61
3824 4589 0.306533 TCGCGACTCAAAAACCTTGC 59.693 50.000 3.71 0.00 0.00 4.01
3825 4590 0.660300 CGCGACTCAAAAACCTTGCC 60.660 55.000 0.00 0.00 0.00 4.52
3826 4591 0.318699 GCGACTCAAAAACCTTGCCC 60.319 55.000 0.00 0.00 0.00 5.36
3827 4592 1.028905 CGACTCAAAAACCTTGCCCA 58.971 50.000 0.00 0.00 0.00 5.36
3828 4593 1.269051 CGACTCAAAAACCTTGCCCAC 60.269 52.381 0.00 0.00 0.00 4.61
3829 4594 1.068588 GACTCAAAAACCTTGCCCACC 59.931 52.381 0.00 0.00 0.00 4.61
3830 4595 1.118838 CTCAAAAACCTTGCCCACCA 58.881 50.000 0.00 0.00 0.00 4.17
3831 4596 0.827368 TCAAAAACCTTGCCCACCAC 59.173 50.000 0.00 0.00 0.00 4.16
3832 4597 0.179059 CAAAAACCTTGCCCACCACC 60.179 55.000 0.00 0.00 0.00 4.61
3833 4598 0.618968 AAAAACCTTGCCCACCACCA 60.619 50.000 0.00 0.00 0.00 4.17
3834 4599 0.618968 AAAACCTTGCCCACCACCAA 60.619 50.000 0.00 0.00 0.00 3.67
3835 4600 0.618968 AAACCTTGCCCACCACCAAA 60.619 50.000 0.00 0.00 0.00 3.28
3843 4608 1.773635 CCACCACCAAATCCCTCCA 59.226 57.895 0.00 0.00 0.00 3.86
3845 4610 0.611896 CACCACCAAATCCCTCCACC 60.612 60.000 0.00 0.00 0.00 4.61
3863 4628 1.222936 CGCTGGAGGAGGCTGATTT 59.777 57.895 0.00 0.00 0.00 2.17
3916 4689 0.321996 GGTGCCTCTCTCGTTTCCTT 59.678 55.000 0.00 0.00 0.00 3.36
3924 4697 1.548269 CTCTCGTTTCCTTGGCTCTCT 59.452 52.381 0.00 0.00 0.00 3.10
3979 4752 1.134367 CGGCTTCTTGTCCTATGTCGA 59.866 52.381 0.00 0.00 0.00 4.20
4221 5007 4.202503 ACTCCTGGAGAAATTCAAGCTCAA 60.203 41.667 29.71 0.00 33.32 3.02
4241 5027 3.382832 CCCTTGTCCGAGCCGACT 61.383 66.667 0.00 0.00 33.70 4.18
4243 5029 2.651361 CTTGTCCGAGCCGACTGT 59.349 61.111 0.00 0.00 33.70 3.55
4552 5342 8.422577 ACTCTTAGTTGGCCTTAAATCATTTT 57.577 30.769 3.32 0.00 0.00 1.82
4557 5347 4.464069 TGGCCTTAAATCATTTTTCGGG 57.536 40.909 3.32 0.00 0.00 5.14
4644 5439 2.279741 CTACCACATGATGTGTTCCGG 58.720 52.381 22.62 10.64 46.45 5.14
4928 5983 4.583871 AGAAGTATGTTCAGCCAAAGGAG 58.416 43.478 0.00 0.00 0.00 3.69
5057 6112 6.531240 GCATGACGAATATGTTTCCATTTTGT 59.469 34.615 0.00 0.00 32.29 2.83
5059 6114 8.924691 CATGACGAATATGTTTCCATTTTGTTT 58.075 29.630 0.00 0.00 32.29 2.83
5061 6116 7.324856 TGACGAATATGTTTCCATTTTGTTTCG 59.675 33.333 0.00 0.00 32.29 3.46
5097 6152 5.236047 GCCTGTGTAGATGCAGAATAAGAAG 59.764 44.000 0.00 0.00 34.87 2.85
5128 6185 2.861462 TTGGCAGTTTTTCTTCACGG 57.139 45.000 0.00 0.00 0.00 4.94
5130 6187 0.383949 GGCAGTTTTTCTTCACGGCA 59.616 50.000 0.00 0.00 35.99 5.69
5170 6227 5.064579 GCTCTCTTTTAAGCCTTCTGATGAC 59.935 44.000 0.00 0.00 32.22 3.06
5179 6236 2.274437 CCTTCTGATGACGTGTGGATG 58.726 52.381 0.00 0.00 0.00 3.51
5199 6256 5.186797 GGATGTTCTATCCAGTCCATAGAGG 59.813 48.000 1.18 0.00 34.90 3.69
5228 6288 7.789831 AGAGTTCCTACATGGTATCTTCCAATA 59.210 37.037 0.00 0.00 41.09 1.90
5297 6357 9.243105 ACTGCCTTGAAATGTTACTACAATTAT 57.757 29.630 0.00 0.00 37.91 1.28
5312 6372 7.719483 ACTACAATTATCCATCCAAATTGCAG 58.281 34.615 6.87 6.38 41.94 4.41
5353 6413 1.966451 GTTTGTGGGCGTCCTCCAG 60.966 63.158 7.97 0.00 34.56 3.86
5390 6461 7.334421 ACTGTGGTTCATGTATCTTGTCATAAC 59.666 37.037 0.00 0.00 0.00 1.89
5436 6507 0.863538 CGGCTCTTGAGATCGACACG 60.864 60.000 1.30 0.00 0.00 4.49
5437 6508 0.452184 GGCTCTTGAGATCGACACGA 59.548 55.000 1.30 0.00 41.13 4.35
5442 6530 2.097629 TCTTGAGATCGACACGATGACC 59.902 50.000 11.26 0.00 47.00 4.02
5478 6566 2.362369 TAGGGGCAGCAGAGCAGAC 61.362 63.158 0.00 0.00 35.83 3.51
5498 9003 1.911357 CGTACCCCTCCCTAAGGTTTT 59.089 52.381 0.00 0.00 44.56 2.43
5499 9004 2.306805 CGTACCCCTCCCTAAGGTTTTT 59.693 50.000 0.00 0.00 44.56 1.94
5528 9037 3.576078 TGAAAAGGTGAGAAGCAAGGA 57.424 42.857 0.00 0.00 0.00 3.36
5598 9115 2.556144 TCAGCTATAGGCCTGCAATG 57.444 50.000 17.99 7.99 43.05 2.82
5605 9122 0.179048 TAGGCCTGCAATGATCACGG 60.179 55.000 17.99 0.00 0.00 4.94
5627 9144 0.177604 TTTGTTGGGCAGCAAAGGTG 59.822 50.000 0.00 0.00 36.76 4.00
5739 9260 5.125100 TGGAACAGCAAAATCTGATGAAC 57.875 39.130 0.00 0.00 44.60 3.18
5744 9265 7.867403 GGAACAGCAAAATCTGATGAACTTAAA 59.133 33.333 0.00 0.00 44.60 1.52
5748 9597 5.578336 GCAAAATCTGATGAACTTAAAGGCC 59.422 40.000 0.00 0.00 0.00 5.19
5779 9628 0.980423 GGAGCAGAGGACTTGTCCTT 59.020 55.000 21.61 7.51 40.86 3.36
5850 9699 5.046529 GCACGATGTTTGACTAGATGATCT 58.953 41.667 0.00 0.00 0.00 2.75
5861 9710 3.701542 ACTAGATGATCTTGCGGTCAGAA 59.298 43.478 0.00 0.00 0.00 3.02
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
526 534 1.536662 AAAGTGGCTCCCGAGTCCT 60.537 57.895 0.00 0.00 30.48 3.85
833 850 3.144125 TGGGCCCACCTATCTATACTTCT 59.856 47.826 24.45 0.00 41.11 2.85
840 857 0.471971 GAGCTGGGCCCACCTATCTA 60.472 60.000 24.45 0.00 41.11 1.98
841 858 1.768077 GAGCTGGGCCCACCTATCT 60.768 63.158 24.45 12.86 41.11 1.98
842 859 2.049627 CTGAGCTGGGCCCACCTATC 62.050 65.000 24.45 16.56 41.11 2.08
899 916 2.284625 TGGATCGTGTGGGAGGCT 60.285 61.111 0.00 0.00 0.00 4.58
907 924 1.296715 GTGCCTTCCTGGATCGTGT 59.703 57.895 0.00 0.00 38.35 4.49
1062 1087 3.103911 GACTTGCGGACGTCGGTG 61.104 66.667 22.19 15.26 39.69 4.94
1083 1108 4.617520 TTGCGGCGGAAGACAGCA 62.618 61.111 10.55 0.00 44.45 4.41
1175 1200 0.037447 AGGGAGGCAAGCAAGAGAAC 59.963 55.000 0.00 0.00 0.00 3.01
1176 1201 0.037303 CAGGGAGGCAAGCAAGAGAA 59.963 55.000 0.00 0.00 0.00 2.87
1179 1204 2.034687 GCAGGGAGGCAAGCAAGA 59.965 61.111 0.00 0.00 0.00 3.02
1236 1264 4.798387 CCAATAAACAGGCGTGCTAAAATC 59.202 41.667 6.26 0.00 0.00 2.17
1254 1282 0.748450 CGGCGAACCCTAGTCCAATA 59.252 55.000 0.00 0.00 0.00 1.90
1282 1310 7.518161 TGATTCTAAAACGACTAACATGCTTG 58.482 34.615 0.00 0.00 0.00 4.01
1290 1318 6.845758 TCTCCCTGATTCTAAAACGACTAA 57.154 37.500 0.00 0.00 0.00 2.24
1307 1335 5.162980 ACCCAAACATCTACTTTTTCTCCCT 60.163 40.000 0.00 0.00 0.00 4.20
1318 1346 4.222124 ACAGGATCACCCAAACATCTAC 57.778 45.455 0.00 0.00 37.41 2.59
1319 1347 4.927267 AACAGGATCACCCAAACATCTA 57.073 40.909 0.00 0.00 37.41 1.98
1320 1348 3.814504 AACAGGATCACCCAAACATCT 57.185 42.857 0.00 0.00 37.41 2.90
1321 1349 4.321974 GGAAAACAGGATCACCCAAACATC 60.322 45.833 0.00 0.00 37.41 3.06
1322 1350 3.578282 GGAAAACAGGATCACCCAAACAT 59.422 43.478 0.00 0.00 37.41 2.71
1323 1351 2.962421 GGAAAACAGGATCACCCAAACA 59.038 45.455 0.00 0.00 37.41 2.83
1324 1352 3.230976 AGGAAAACAGGATCACCCAAAC 58.769 45.455 0.00 0.00 37.41 2.93
1325 1353 3.611025 AGGAAAACAGGATCACCCAAA 57.389 42.857 0.00 0.00 37.41 3.28
1455 1484 6.645790 ATCCACCAATCAATCAGCTTTATC 57.354 37.500 0.00 0.00 0.00 1.75
1584 1613 6.015940 CCCTGAACTTCTAAAAACATGCTTCT 60.016 38.462 0.00 0.00 0.00 2.85
1761 1823 5.362263 TCCCTTGAGCCATTAACGTATAAC 58.638 41.667 0.00 0.00 0.00 1.89
1927 2060 6.873605 TGAGTAACATGTTAATGAGACAGTGG 59.126 38.462 22.20 0.00 37.24 4.00
1984 2119 1.815408 GCTCAACCCAGCTCAAACTCA 60.815 52.381 0.00 0.00 36.38 3.41
2131 2488 3.630312 GTGTTTCTTTCTGTAGGCACCAA 59.370 43.478 0.00 0.00 0.00 3.67
2171 2528 9.498307 GAAATTTCTCGAAACACAGTTTCTTTA 57.502 29.630 17.43 5.47 32.51 1.85
2181 2538 9.825972 TGATAATTCAGAAATTTCTCGAAACAC 57.174 29.630 24.15 18.47 36.49 3.32
2398 2777 7.865706 AGGTTTAAGATAGCCAAAGTGTATG 57.134 36.000 0.00 0.00 0.00 2.39
2481 2866 9.874215 CATATGCAGAGTGTAAATGTAGATTTG 57.126 33.333 8.05 0.00 33.63 2.32
2588 2973 6.206829 ACTGTTTTTCGCTAAAAGGATAGCTT 59.793 34.615 0.00 0.00 44.89 3.74
2594 2979 5.613329 TCCTACTGTTTTTCGCTAAAAGGA 58.387 37.500 0.00 0.00 36.44 3.36
2595 2980 5.934935 TCCTACTGTTTTTCGCTAAAAGG 57.065 39.130 0.00 0.00 36.44 3.11
2596 2981 6.856426 CCTTTCCTACTGTTTTTCGCTAAAAG 59.144 38.462 0.00 0.00 36.44 2.27
2600 2987 3.749609 GCCTTTCCTACTGTTTTTCGCTA 59.250 43.478 0.00 0.00 0.00 4.26
2662 3049 4.495459 TCCCATCCCATATGTAGGTACA 57.505 45.455 1.24 0.00 40.98 2.90
2663 3050 5.836024 TTTCCCATCCCATATGTAGGTAC 57.164 43.478 1.24 0.00 0.00 3.34
2664 3051 6.850263 TTTTTCCCATCCCATATGTAGGTA 57.150 37.500 1.24 0.00 0.00 3.08
2665 3052 5.742562 TTTTTCCCATCCCATATGTAGGT 57.257 39.130 1.24 0.00 0.00 3.08
2744 3131 4.668636 ACAGAGTAAGAACTAGCCTCAGT 58.331 43.478 0.00 0.00 35.56 3.41
2760 3147 8.148351 TGATGTACAAGTAGCTTAAAACAGAGT 58.852 33.333 0.00 0.00 0.00 3.24
2765 3152 8.989980 AGAGTTGATGTACAAGTAGCTTAAAAC 58.010 33.333 0.00 0.00 41.56 2.43
2797 3184 8.867112 ACAAGCTGATGCAATTATATGAAAAG 57.133 30.769 0.00 0.00 42.74 2.27
2888 3275 1.380380 CAATTCAGGTGGGGAGCCC 60.380 63.158 0.00 0.00 45.71 5.19
2889 3276 0.259938 ATCAATTCAGGTGGGGAGCC 59.740 55.000 0.00 0.00 0.00 4.70
2890 3277 1.213926 AGATCAATTCAGGTGGGGAGC 59.786 52.381 0.00 0.00 0.00 4.70
2891 3278 2.776536 AGAGATCAATTCAGGTGGGGAG 59.223 50.000 0.00 0.00 0.00 4.30
2892 3279 2.850833 AGAGATCAATTCAGGTGGGGA 58.149 47.619 0.00 0.00 0.00 4.81
2893 3280 3.659183 AAGAGATCAATTCAGGTGGGG 57.341 47.619 0.00 0.00 0.00 4.96
2894 3281 6.418101 TCTTTAAGAGATCAATTCAGGTGGG 58.582 40.000 0.00 0.00 0.00 4.61
2895 3282 7.928307 TTCTTTAAGAGATCAATTCAGGTGG 57.072 36.000 0.00 0.00 33.49 4.61
2904 3291 9.981114 GGGTCAAAATTTTCTTTAAGAGATCAA 57.019 29.630 0.00 0.00 33.49 2.57
2905 3292 9.142014 TGGGTCAAAATTTTCTTTAAGAGATCA 57.858 29.630 0.00 0.00 33.49 2.92
2906 3293 9.631452 CTGGGTCAAAATTTTCTTTAAGAGATC 57.369 33.333 0.00 0.00 33.49 2.75
2907 3294 9.147732 ACTGGGTCAAAATTTTCTTTAAGAGAT 57.852 29.630 0.00 0.00 33.49 2.75
2908 3295 8.533569 ACTGGGTCAAAATTTTCTTTAAGAGA 57.466 30.769 0.00 0.00 0.00 3.10
2909 3296 9.599866 AAACTGGGTCAAAATTTTCTTTAAGAG 57.400 29.630 0.00 0.00 0.00 2.85
2915 3302 9.996554 CCTTATAAACTGGGTCAAAATTTTCTT 57.003 29.630 0.00 0.00 0.00 2.52
2916 3303 9.154632 ACCTTATAAACTGGGTCAAAATTTTCT 57.845 29.630 0.00 0.00 0.00 2.52
2919 3306 9.816787 TCTACCTTATAAACTGGGTCAAAATTT 57.183 29.630 0.00 0.00 33.74 1.82
2920 3307 9.990868 ATCTACCTTATAAACTGGGTCAAAATT 57.009 29.630 0.00 0.00 33.74 1.82
2921 3308 9.628500 GATCTACCTTATAAACTGGGTCAAAAT 57.372 33.333 0.00 0.00 33.74 1.82
2928 3315 5.803237 ACCGATCTACCTTATAAACTGGG 57.197 43.478 0.00 0.00 0.00 4.45
2930 3317 8.712285 TTTGAACCGATCTACCTTATAAACTG 57.288 34.615 0.00 0.00 0.00 3.16
2942 3531 4.963373 TGTCTGGTTTTTGAACCGATCTA 58.037 39.130 4.08 0.00 45.75 1.98
2948 3537 2.102252 TGCCATGTCTGGTTTTTGAACC 59.898 45.455 1.42 1.42 45.10 3.62
2966 3555 5.828328 AGTTTTACTTATAATCTGGGCTGCC 59.172 40.000 11.05 11.05 0.00 4.85
2969 3558 7.225011 GCCTAGTTTTACTTATAATCTGGGCT 58.775 38.462 11.48 0.00 41.08 5.19
2984 3573 2.957006 TGCGGTTTTTGGCCTAGTTTTA 59.043 40.909 3.32 0.00 0.00 1.52
3027 3616 1.603802 CTGTAGCCTTGTGTTGTGTGG 59.396 52.381 0.00 0.00 0.00 4.17
3055 3644 0.250989 TCGGATTTGGGGGTGTGTTC 60.251 55.000 0.00 0.00 0.00 3.18
3057 3646 0.251165 CTTCGGATTTGGGGGTGTGT 60.251 55.000 0.00 0.00 0.00 3.72
3125 3714 2.726760 CGAGTGCTATAAGGCGTTCATC 59.273 50.000 0.00 0.00 34.52 2.92
3127 3716 1.801395 GCGAGTGCTATAAGGCGTTCA 60.801 52.381 0.00 0.00 38.39 3.18
3129 3718 2.973420 GCGAGTGCTATAAGGCGTT 58.027 52.632 0.00 0.00 38.39 4.84
3142 3731 1.135373 CGGTTGTCTCATGTAGCGAGT 60.135 52.381 0.00 0.00 33.74 4.18
3183 3772 1.745115 CGGCCTCAGATTTTCGGCA 60.745 57.895 0.00 0.00 44.23 5.69
3187 3776 1.431036 GCAGCGGCCTCAGATTTTC 59.569 57.895 0.00 0.00 0.00 2.29
3224 3813 0.613260 TGATCTGGGTTTCTGGTCGG 59.387 55.000 0.00 0.00 0.00 4.79
3231 3987 2.352127 GCTGCTTTGTGATCTGGGTTTC 60.352 50.000 0.00 0.00 0.00 2.78
3295 4054 0.679002 CTGGTCAGGCTGGTTCATGG 60.679 60.000 15.73 0.00 0.00 3.66
3348 4107 2.901292 GCTGCCTATGCGCATCACC 61.901 63.158 29.11 16.00 41.78 4.02
3356 4115 3.204827 CGGTGGTGCTGCCTATGC 61.205 66.667 0.00 0.00 38.35 3.14
3385 4144 4.487412 GTGCTCGGCTGCCAATGC 62.487 66.667 20.29 18.35 38.26 3.56
3391 4150 3.558411 GTCATCGTGCTCGGCTGC 61.558 66.667 8.49 0.00 37.69 5.25
3406 4165 0.734889 CCTCATGTTCAATGCGGGTC 59.265 55.000 0.00 0.00 0.00 4.46
3412 4171 5.824097 TGTATCCATGTCCTCATGTTCAATG 59.176 40.000 7.30 0.00 46.99 2.82
3415 4174 4.384098 GGTGTATCCATGTCCTCATGTTCA 60.384 45.833 7.30 0.00 46.99 3.18
3475 4235 0.036732 AAAGCTCAGCCATGACGGAA 59.963 50.000 0.00 0.00 36.56 4.30
3476 4236 0.391661 GAAAGCTCAGCCATGACGGA 60.392 55.000 0.00 0.00 36.56 4.69
3502 4262 2.806244 GTTACTTGTGCTGGACAACGAT 59.194 45.455 10.84 2.73 39.78 3.73
3503 4263 2.206750 GTTACTTGTGCTGGACAACGA 58.793 47.619 10.84 0.00 39.78 3.85
3505 4265 2.294074 TGGTTACTTGTGCTGGACAAC 58.706 47.619 10.84 2.05 39.78 3.32
3507 4267 2.171659 TCTTGGTTACTTGTGCTGGACA 59.828 45.455 0.00 0.00 0.00 4.02
3508 4268 2.808543 CTCTTGGTTACTTGTGCTGGAC 59.191 50.000 0.00 0.00 0.00 4.02
3509 4269 2.703536 TCTCTTGGTTACTTGTGCTGGA 59.296 45.455 0.00 0.00 0.00 3.86
3511 4271 3.686726 GGATCTCTTGGTTACTTGTGCTG 59.313 47.826 0.00 0.00 0.00 4.41
3512 4272 3.327757 TGGATCTCTTGGTTACTTGTGCT 59.672 43.478 0.00 0.00 0.00 4.40
3515 4275 3.327757 TGCTGGATCTCTTGGTTACTTGT 59.672 43.478 0.00 0.00 0.00 3.16
3520 4280 1.210478 GGCTGCTGGATCTCTTGGTTA 59.790 52.381 0.00 0.00 0.00 2.85
3570 4330 2.639065 ACTTTCTTGTTGAAGGCGTCA 58.361 42.857 0.00 0.00 35.46 4.35
3574 4334 3.304726 GGCACTACTTTCTTGTTGAAGGC 60.305 47.826 0.00 0.00 35.46 4.35
3613 4378 4.459089 GGCAGTGCCTCCGGAGTC 62.459 72.222 29.25 18.91 46.69 3.36
3633 4398 2.693074 GAGAAGAAGTTTTTGGGTGGCA 59.307 45.455 0.00 0.00 0.00 4.92
3663 4428 4.385825 ACTAATCAGCGACTCAAAAACCA 58.614 39.130 0.00 0.00 0.00 3.67
3665 4430 4.629065 CGACTAATCAGCGACTCAAAAAC 58.371 43.478 0.00 0.00 0.00 2.43
3666 4431 3.122948 GCGACTAATCAGCGACTCAAAAA 59.877 43.478 0.00 0.00 0.00 1.94
3667 4432 2.666508 GCGACTAATCAGCGACTCAAAA 59.333 45.455 0.00 0.00 0.00 2.44
3668 4433 2.094700 AGCGACTAATCAGCGACTCAAA 60.095 45.455 0.00 0.00 35.78 2.69
3669 4434 1.472878 AGCGACTAATCAGCGACTCAA 59.527 47.619 0.00 0.00 35.78 3.02
3670 4435 1.095600 AGCGACTAATCAGCGACTCA 58.904 50.000 0.00 0.00 35.78 3.41
3671 4436 1.202200 ACAGCGACTAATCAGCGACTC 60.202 52.381 0.00 0.00 35.78 3.36
3672 4437 0.811915 ACAGCGACTAATCAGCGACT 59.188 50.000 0.00 0.00 35.78 4.18
3673 4438 2.470196 TACAGCGACTAATCAGCGAC 57.530 50.000 0.00 0.00 35.78 5.19
3674 4439 3.813724 ACTATACAGCGACTAATCAGCGA 59.186 43.478 0.00 0.00 35.78 4.93
3675 4440 4.148563 ACTATACAGCGACTAATCAGCG 57.851 45.455 0.00 0.00 35.78 5.18
3676 4441 4.152526 CGACTATACAGCGACTAATCAGC 58.847 47.826 0.00 0.00 0.00 4.26
3677 4442 4.152526 GCGACTATACAGCGACTAATCAG 58.847 47.826 0.00 0.00 0.00 2.90
3678 4443 3.058432 GGCGACTATACAGCGACTAATCA 60.058 47.826 0.00 0.00 0.00 2.57
3679 4444 3.490399 GGCGACTATACAGCGACTAATC 58.510 50.000 0.00 0.00 0.00 1.75
3680 4445 2.095869 CGGCGACTATACAGCGACTAAT 60.096 50.000 0.00 0.00 30.19 1.73
3681 4446 1.262417 CGGCGACTATACAGCGACTAA 59.738 52.381 0.00 0.00 30.19 2.24
3682 4447 0.863799 CGGCGACTATACAGCGACTA 59.136 55.000 0.00 0.00 30.19 2.59
3683 4448 0.812811 TCGGCGACTATACAGCGACT 60.813 55.000 4.99 0.00 30.19 4.18
3684 4449 0.028505 TTCGGCGACTATACAGCGAC 59.971 55.000 10.16 0.00 0.00 5.19
3685 4450 0.949397 ATTCGGCGACTATACAGCGA 59.051 50.000 10.16 0.00 0.00 4.93
3686 4451 2.606717 TATTCGGCGACTATACAGCG 57.393 50.000 10.16 0.00 0.00 5.18
3687 4452 3.542704 CGATTATTCGGCGACTATACAGC 59.457 47.826 10.16 0.00 41.74 4.40
3688 4453 3.542704 GCGATTATTCGGCGACTATACAG 59.457 47.826 10.16 0.00 45.59 2.74
3689 4454 3.495193 GCGATTATTCGGCGACTATACA 58.505 45.455 10.16 0.00 45.59 2.29
3699 4464 1.567504 ACGACTTGGCGATTATTCGG 58.432 50.000 1.78 0.00 45.59 4.30
3701 4466 4.142773 TGGAAAACGACTTGGCGATTATTC 60.143 41.667 1.78 1.63 34.83 1.75
3702 4467 3.754323 TGGAAAACGACTTGGCGATTATT 59.246 39.130 1.78 0.00 34.83 1.40
3703 4468 3.340034 TGGAAAACGACTTGGCGATTAT 58.660 40.909 1.78 0.00 34.83 1.28
3704 4469 2.768698 TGGAAAACGACTTGGCGATTA 58.231 42.857 1.78 0.00 34.83 1.75
3705 4470 1.600023 TGGAAAACGACTTGGCGATT 58.400 45.000 1.78 0.00 34.83 3.34
3706 4471 1.600023 TTGGAAAACGACTTGGCGAT 58.400 45.000 1.78 0.00 34.83 4.58
3707 4472 1.380524 TTTGGAAAACGACTTGGCGA 58.619 45.000 1.78 0.00 34.83 5.54
3708 4473 2.196295 TTTTGGAAAACGACTTGGCG 57.804 45.000 0.00 0.00 37.29 5.69
3709 4474 4.116238 TGATTTTTGGAAAACGACTTGGC 58.884 39.130 0.00 0.00 0.00 4.52
3710 4475 4.744631 CCTGATTTTTGGAAAACGACTTGG 59.255 41.667 0.00 0.00 0.00 3.61
3711 4476 4.744631 CCCTGATTTTTGGAAAACGACTTG 59.255 41.667 0.00 0.00 0.00 3.16
3712 4477 4.739436 GCCCTGATTTTTGGAAAACGACTT 60.739 41.667 0.00 0.00 0.00 3.01
3713 4478 3.243737 GCCCTGATTTTTGGAAAACGACT 60.244 43.478 0.00 0.00 0.00 4.18
3714 4479 3.057019 GCCCTGATTTTTGGAAAACGAC 58.943 45.455 0.00 0.00 0.00 4.34
3715 4480 2.287909 CGCCCTGATTTTTGGAAAACGA 60.288 45.455 0.00 0.00 0.00 3.85
3716 4481 2.058057 CGCCCTGATTTTTGGAAAACG 58.942 47.619 0.00 0.00 0.00 3.60
3717 4482 3.057019 GTCGCCCTGATTTTTGGAAAAC 58.943 45.455 0.00 0.00 0.00 2.43
3718 4483 2.962421 AGTCGCCCTGATTTTTGGAAAA 59.038 40.909 0.00 0.00 0.00 2.29
3719 4484 2.556622 GAGTCGCCCTGATTTTTGGAAA 59.443 45.455 0.00 0.00 0.00 3.13
3720 4485 2.159382 GAGTCGCCCTGATTTTTGGAA 58.841 47.619 0.00 0.00 0.00 3.53
3721 4486 1.821216 GAGTCGCCCTGATTTTTGGA 58.179 50.000 0.00 0.00 0.00 3.53
3722 4487 0.447801 CGAGTCGCCCTGATTTTTGG 59.552 55.000 0.00 0.00 0.00 3.28
3723 4488 3.975992 CGAGTCGCCCTGATTTTTG 57.024 52.632 0.00 0.00 0.00 2.44
3735 4500 1.005662 TCGTTGTATAGTCGCGAGTCG 60.006 52.381 21.77 16.36 40.15 4.18
3736 4501 2.030213 AGTCGTTGTATAGTCGCGAGTC 59.970 50.000 21.77 6.97 30.65 3.36
3737 4502 2.005451 AGTCGTTGTATAGTCGCGAGT 58.995 47.619 21.82 21.82 32.07 4.18
3738 4503 2.733820 AGTCGTTGTATAGTCGCGAG 57.266 50.000 10.24 0.00 32.07 5.03
3739 4504 3.419915 GAAAGTCGTTGTATAGTCGCGA 58.580 45.455 3.71 3.71 0.00 5.87
3740 4505 2.210485 CGAAAGTCGTTGTATAGTCGCG 59.790 50.000 0.00 0.00 34.72 5.87
3741 4506 3.795502 CGAAAGTCGTTGTATAGTCGC 57.204 47.619 0.00 0.00 34.72 5.19
3756 4521 3.281601 CTCAGCGTATAGTCGACGAAAG 58.718 50.000 10.46 3.33 42.98 2.62
3757 4522 2.538333 GCTCAGCGTATAGTCGACGAAA 60.538 50.000 10.46 0.00 42.98 3.46
3758 4523 1.004185 GCTCAGCGTATAGTCGACGAA 60.004 52.381 10.46 2.69 42.98 3.85
3759 4524 0.580578 GCTCAGCGTATAGTCGACGA 59.419 55.000 10.46 5.12 42.98 4.20
3760 4525 0.582482 AGCTCAGCGTATAGTCGACG 59.418 55.000 10.46 0.00 43.19 5.12
3761 4526 2.031807 TGAAGCTCAGCGTATAGTCGAC 59.968 50.000 7.70 7.70 0.00 4.20
3762 4527 2.285977 TGAAGCTCAGCGTATAGTCGA 58.714 47.619 0.00 0.00 0.00 4.20
3763 4528 2.603412 CCTGAAGCTCAGCGTATAGTCG 60.603 54.545 7.44 0.00 42.98 4.18
3764 4529 2.287909 CCCTGAAGCTCAGCGTATAGTC 60.288 54.545 7.44 0.00 42.98 2.59
3765 4530 1.683917 CCCTGAAGCTCAGCGTATAGT 59.316 52.381 7.44 0.00 42.98 2.12
3766 4531 1.604185 GCCCTGAAGCTCAGCGTATAG 60.604 57.143 7.44 0.00 42.98 1.31
3767 4532 0.389391 GCCCTGAAGCTCAGCGTATA 59.611 55.000 7.44 0.00 42.98 1.47
3768 4533 1.144936 GCCCTGAAGCTCAGCGTAT 59.855 57.895 7.44 0.00 42.98 3.06
3769 4534 1.984570 AGCCCTGAAGCTCAGCGTA 60.985 57.895 7.44 0.00 42.98 4.42
3770 4535 3.317571 AGCCCTGAAGCTCAGCGT 61.318 61.111 7.44 0.00 42.98 5.07
3799 4564 0.306533 TTTTTGAGTCGCGACTTGGC 59.693 50.000 39.38 27.60 42.66 4.52
3800 4565 1.333791 GGTTTTTGAGTCGCGACTTGG 60.334 52.381 39.38 0.00 42.66 3.61
3801 4566 1.597663 AGGTTTTTGAGTCGCGACTTG 59.402 47.619 39.38 0.00 42.66 3.16
3802 4567 1.949465 AGGTTTTTGAGTCGCGACTT 58.051 45.000 39.38 24.60 42.66 3.01
3803 4568 1.597663 CAAGGTTTTTGAGTCGCGACT 59.402 47.619 39.89 39.89 45.84 4.18
3804 4569 1.920272 GCAAGGTTTTTGAGTCGCGAC 60.920 52.381 31.30 31.30 0.00 5.19
3805 4570 0.306533 GCAAGGTTTTTGAGTCGCGA 59.693 50.000 3.71 3.71 0.00 5.87
3806 4571 0.660300 GGCAAGGTTTTTGAGTCGCG 60.660 55.000 0.00 0.00 0.00 5.87
3807 4572 0.318699 GGGCAAGGTTTTTGAGTCGC 60.319 55.000 0.00 0.00 0.00 5.19
3808 4573 1.028905 TGGGCAAGGTTTTTGAGTCG 58.971 50.000 0.00 0.00 0.00 4.18
3809 4574 1.068588 GGTGGGCAAGGTTTTTGAGTC 59.931 52.381 0.00 0.00 0.00 3.36
3810 4575 1.119684 GGTGGGCAAGGTTTTTGAGT 58.880 50.000 0.00 0.00 0.00 3.41
3811 4576 1.118838 TGGTGGGCAAGGTTTTTGAG 58.881 50.000 0.00 0.00 0.00 3.02
3812 4577 0.827368 GTGGTGGGCAAGGTTTTTGA 59.173 50.000 0.00 0.00 0.00 2.69
3813 4578 0.179059 GGTGGTGGGCAAGGTTTTTG 60.179 55.000 0.00 0.00 0.00 2.44
3814 4579 0.618968 TGGTGGTGGGCAAGGTTTTT 60.619 50.000 0.00 0.00 0.00 1.94
3815 4580 0.618968 TTGGTGGTGGGCAAGGTTTT 60.619 50.000 0.00 0.00 0.00 2.43
3816 4581 0.618968 TTTGGTGGTGGGCAAGGTTT 60.619 50.000 0.00 0.00 0.00 3.27
3817 4582 0.399806 ATTTGGTGGTGGGCAAGGTT 60.400 50.000 0.00 0.00 0.00 3.50
3818 4583 0.831711 GATTTGGTGGTGGGCAAGGT 60.832 55.000 0.00 0.00 0.00 3.50
3819 4584 1.543944 GGATTTGGTGGTGGGCAAGG 61.544 60.000 0.00 0.00 0.00 3.61
3820 4585 1.543944 GGGATTTGGTGGTGGGCAAG 61.544 60.000 0.00 0.00 0.00 4.01
3821 4586 1.535202 GGGATTTGGTGGTGGGCAA 60.535 57.895 0.00 0.00 0.00 4.52
3822 4587 2.119391 GGGATTTGGTGGTGGGCA 59.881 61.111 0.00 0.00 0.00 5.36
3823 4588 1.682344 GAGGGATTTGGTGGTGGGC 60.682 63.158 0.00 0.00 0.00 5.36
3824 4589 1.000359 GGAGGGATTTGGTGGTGGG 60.000 63.158 0.00 0.00 0.00 4.61
3825 4590 0.611896 GTGGAGGGATTTGGTGGTGG 60.612 60.000 0.00 0.00 0.00 4.61
3826 4591 0.611896 GGTGGAGGGATTTGGTGGTG 60.612 60.000 0.00 0.00 0.00 4.17
3827 4592 1.774300 GGTGGAGGGATTTGGTGGT 59.226 57.895 0.00 0.00 0.00 4.16
3828 4593 1.378514 CGGTGGAGGGATTTGGTGG 60.379 63.158 0.00 0.00 0.00 4.61
3829 4594 2.046285 GCGGTGGAGGGATTTGGTG 61.046 63.158 0.00 0.00 0.00 4.17
3830 4595 2.231380 AGCGGTGGAGGGATTTGGT 61.231 57.895 0.00 0.00 0.00 3.67
3831 4596 1.750399 CAGCGGTGGAGGGATTTGG 60.750 63.158 6.74 0.00 0.00 3.28
3832 4597 3.909662 CAGCGGTGGAGGGATTTG 58.090 61.111 6.74 0.00 0.00 2.32
3843 4608 3.991924 ATCAGCCTCCTCCAGCGGT 62.992 63.158 0.00 0.00 0.00 5.68
3845 4610 0.465705 TAAATCAGCCTCCTCCAGCG 59.534 55.000 0.00 0.00 0.00 5.18
3896 4667 1.446272 GGAAACGAGAGAGGCACCG 60.446 63.158 0.00 0.00 0.00 4.94
3897 4668 0.321996 AAGGAAACGAGAGAGGCACC 59.678 55.000 0.00 0.00 0.00 5.01
3916 4689 2.106566 GAGACTGATGGAAGAGAGCCA 58.893 52.381 0.00 0.00 40.24 4.75
3924 4697 1.343478 GGGGAGAGGAGACTGATGGAA 60.343 57.143 0.00 0.00 44.43 3.53
3979 4752 0.036010 CGGACTGGATTTGAGGCTGT 60.036 55.000 0.00 0.00 0.00 4.40
4221 5007 1.987855 TCGGCTCGGACAAGGGATT 60.988 57.895 0.00 0.00 0.00 3.01
4552 5342 4.794655 GCAAAGCAAACTATTTGTCCCGAA 60.795 41.667 3.44 0.00 42.56 4.30
4557 5347 4.050553 TGCTGCAAAGCAAACTATTTGTC 58.949 39.130 0.00 0.00 42.40 3.18
4607 5397 3.585732 TGGTAGGAGGAACGAGGATTTTT 59.414 43.478 0.00 0.00 0.00 1.94
4608 5398 3.055312 GTGGTAGGAGGAACGAGGATTTT 60.055 47.826 0.00 0.00 0.00 1.82
4609 5399 2.500504 GTGGTAGGAGGAACGAGGATTT 59.499 50.000 0.00 0.00 0.00 2.17
4610 5400 2.108970 GTGGTAGGAGGAACGAGGATT 58.891 52.381 0.00 0.00 0.00 3.01
4616 5411 2.168521 ACATCATGTGGTAGGAGGAACG 59.831 50.000 0.00 0.00 0.00 3.95
4644 5439 5.841957 AATTAGGTGAAGATGGCATTGTC 57.158 39.130 0.00 2.81 0.00 3.18
4716 5770 5.950549 TCCTAAACAACCCAAGTACAACAAA 59.049 36.000 0.00 0.00 0.00 2.83
4819 5874 1.840635 GTATCCAGCTTCTTGGGAGGT 59.159 52.381 0.00 0.00 38.81 3.85
4928 5983 1.503542 CAGCGGTCCATTTCAGTGC 59.496 57.895 0.00 0.00 0.00 4.40
5057 6112 1.466950 CAGGCGCCAAAATACTCGAAA 59.533 47.619 31.54 0.00 0.00 3.46
5059 6114 0.036765 ACAGGCGCCAAAATACTCGA 60.037 50.000 31.54 0.00 0.00 4.04
5061 6116 1.165270 ACACAGGCGCCAAAATACTC 58.835 50.000 31.54 0.00 0.00 2.59
5097 6152 1.187567 ACTGCCAATTGGTTGCTCCC 61.188 55.000 25.19 7.64 37.57 4.30
5128 6185 9.936759 AAAGAGAGCTCTATATATTTAGGTTGC 57.063 33.333 18.25 0.00 39.39 4.17
5170 6227 3.448686 GACTGGATAGAACATCCACACG 58.551 50.000 1.80 0.00 42.81 4.49
5179 6236 5.636123 TCTCCTCTATGGACTGGATAGAAC 58.364 45.833 0.00 0.00 40.56 3.01
5199 6256 6.015772 GGAAGATACCATGTAGGAACTCTCTC 60.016 46.154 0.00 0.00 41.75 3.20
5297 6357 3.042871 GCAAACTGCAATTTGGATGGA 57.957 42.857 20.98 0.00 44.26 3.41
5390 6461 6.183360 GGGTCCTCCATAATTTGTTCAATCAG 60.183 42.308 0.00 0.00 35.00 2.90
5436 6507 3.955471 TCTCCACCAATCAAAGGTCATC 58.045 45.455 0.00 0.00 37.23 2.92
5437 6508 4.202609 ACTTCTCCACCAATCAAAGGTCAT 60.203 41.667 0.00 0.00 37.23 3.06
5442 6530 4.265073 CCCTACTTCTCCACCAATCAAAG 58.735 47.826 0.00 0.00 0.00 2.77
5504 9009 5.186797 TCCTTGCTTCTCACCTTTTCAAAAA 59.813 36.000 0.00 0.00 0.00 1.94
5505 9010 4.709397 TCCTTGCTTCTCACCTTTTCAAAA 59.291 37.500 0.00 0.00 0.00 2.44
5506 9011 4.097892 GTCCTTGCTTCTCACCTTTTCAAA 59.902 41.667 0.00 0.00 0.00 2.69
5507 9012 3.632145 GTCCTTGCTTCTCACCTTTTCAA 59.368 43.478 0.00 0.00 0.00 2.69
5508 9013 3.117888 AGTCCTTGCTTCTCACCTTTTCA 60.118 43.478 0.00 0.00 0.00 2.69
5509 9014 3.251972 CAGTCCTTGCTTCTCACCTTTTC 59.748 47.826 0.00 0.00 0.00 2.29
5510 9015 3.217626 CAGTCCTTGCTTCTCACCTTTT 58.782 45.455 0.00 0.00 0.00 2.27
5528 9037 2.936912 GCCTCGACTGGACTGCAGT 61.937 63.158 21.88 21.88 35.30 4.40
5542 9051 1.677217 GGACACTTCACTCATGGCCTC 60.677 57.143 3.32 0.00 38.62 4.70
5545 9054 2.012673 GATGGACACTTCACTCATGGC 58.987 52.381 0.00 0.00 0.00 4.40
5590 9107 0.742505 AATGCCGTGATCATTGCAGG 59.257 50.000 21.67 11.98 37.12 4.85
5598 9115 0.458370 GCCCAACAAATGCCGTGATC 60.458 55.000 0.00 0.00 0.00 2.92
5605 9122 0.869730 CTTTGCTGCCCAACAAATGC 59.130 50.000 0.00 0.00 35.38 3.56
5627 9144 2.581216 ATCATCCTGGGATCATGCAC 57.419 50.000 0.00 0.00 31.62 4.57
5636 9156 7.935755 GTCCATATCAATACATATCATCCTGGG 59.064 40.741 0.00 0.00 0.00 4.45
5735 9256 1.787012 GACGACGGCCTTTAAGTTCA 58.213 50.000 0.00 0.00 0.00 3.18
5759 9608 1.216710 GGACAAGTCCTCTGCTCCG 59.783 63.158 11.94 0.00 46.16 4.63
5772 9621 1.667830 CTCGCCGCTTCAAGGACAA 60.668 57.895 0.00 0.00 0.00 3.18
5850 9699 3.146066 ACATTAGCTTTTCTGACCGCAA 58.854 40.909 0.00 0.00 0.00 4.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.