Multiple sequence alignment - TraesCS4B01G062400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G062400 chr4B 100.000 6726 0 0 1 6726 54042311 54035586 0.000000e+00 12421.0
1 TraesCS4B01G062400 chr4B 98.021 1364 26 1 1545 2907 122560472 122561835 0.000000e+00 2368.0
2 TraesCS4B01G062400 chr4B 82.237 1216 148 45 2922 4116 54349516 54348348 0.000000e+00 987.0
3 TraesCS4B01G062400 chr4B 98.753 401 5 0 1146 1546 54349900 54349500 0.000000e+00 713.0
4 TraesCS4B01G062400 chr4B 89.202 426 31 11 5258 5682 54138363 54137952 1.000000e-142 518.0
5 TraesCS4B01G062400 chr4B 84.802 454 60 8 5231 5682 54346710 54346264 1.330000e-121 448.0
6 TraesCS4B01G062400 chr6B 99.633 1361 5 0 1545 2905 337939235 337940595 0.000000e+00 2486.0
7 TraesCS4B01G062400 chr6B 99.118 1361 11 1 1546 2906 698979878 698981237 0.000000e+00 2446.0
8 TraesCS4B01G062400 chr6B 97.210 681 19 0 1 681 683223585 683224265 0.000000e+00 1153.0
9 TraesCS4B01G062400 chr6B 82.486 177 24 7 3748 3922 417850638 417850467 1.510000e-31 148.0
10 TraesCS4B01G062400 chr1B 99.413 1363 8 0 1546 2908 661570267 661568905 0.000000e+00 2473.0
11 TraesCS4B01G062400 chr1B 99.116 1357 11 1 1549 2905 623107515 623108870 0.000000e+00 2438.0
12 TraesCS4B01G062400 chr1B 97.651 681 16 0 1 681 354262532 354263212 0.000000e+00 1170.0
13 TraesCS4B01G062400 chr1B 97.357 681 18 0 1 681 406393911 406393231 0.000000e+00 1158.0
14 TraesCS4B01G062400 chr1B 97.365 683 15 3 1 681 420259569 420258888 0.000000e+00 1158.0
15 TraesCS4B01G062400 chr1B 97.357 681 16 2 1 681 354255687 354256365 0.000000e+00 1157.0
16 TraesCS4B01G062400 chr7A 99.485 1358 7 0 1549 2906 736543280 736541923 0.000000e+00 2470.0
17 TraesCS4B01G062400 chr7A 99.268 1367 9 1 1539 2905 194170061 194168696 0.000000e+00 2468.0
18 TraesCS4B01G062400 chr7A 99.409 1353 8 0 1549 2901 119788648 119787296 0.000000e+00 2455.0
19 TraesCS4B01G062400 chr5B 99.337 1358 8 1 1547 2904 42258426 42257070 0.000000e+00 2457.0
20 TraesCS4B01G062400 chr4A 94.082 1335 66 9 2941 4272 565302716 565304040 0.000000e+00 2015.0
21 TraesCS4B01G062400 chr4A 88.656 811 64 13 4424 5215 565304239 565305040 0.000000e+00 963.0
22 TraesCS4B01G062400 chr4A 84.885 999 92 23 5213 6207 565305122 565306065 0.000000e+00 953.0
23 TraesCS4B01G062400 chr4A 93.969 514 19 9 6218 6726 565306030 565306536 0.000000e+00 767.0
24 TraesCS4B01G062400 chr4A 83.709 577 65 21 5258 5831 565043155 565043705 1.000000e-142 518.0
25 TraesCS4B01G062400 chr4A 83.043 460 59 14 5231 5682 564974023 564974471 3.780000e-107 399.0
26 TraesCS4B01G062400 chr4A 86.942 291 21 9 884 1170 565301967 565302244 1.820000e-80 311.0
27 TraesCS4B01G062400 chr4A 93.367 196 9 2 675 870 565300952 565301143 3.070000e-73 287.0
28 TraesCS4B01G062400 chr4A 81.288 326 25 10 1250 1547 565302344 565302661 1.460000e-56 231.0
29 TraesCS4B01G062400 chr4A 98.039 51 1 0 4379 4429 565304042 565304092 9.290000e-14 89.8
30 TraesCS4B01G062400 chr4D 94.234 1266 62 9 3015 4275 37052050 37050791 0.000000e+00 1923.0
31 TraesCS4B01G062400 chr4D 86.703 1820 134 42 4424 6207 37050609 37048862 0.000000e+00 1921.0
32 TraesCS4B01G062400 chr4D 93.191 514 23 9 6218 6726 37048897 37048391 0.000000e+00 745.0
33 TraesCS4B01G062400 chr4D 83.854 576 66 19 5258 5831 37135403 37134853 2.150000e-144 523.0
34 TraesCS4B01G062400 chr4D 91.349 393 16 9 860 1250 37052737 37052361 7.730000e-144 521.0
35 TraesCS4B01G062400 chr4D 85.022 454 59 8 5231 5682 37253617 37253171 2.860000e-123 453.0
36 TraesCS4B01G062400 chr4D 76.573 747 118 30 3130 3861 37262467 37261763 2.310000e-94 357.0
37 TraesCS4B01G062400 chr4D 93.367 196 11 2 675 870 37055926 37055733 8.530000e-74 289.0
38 TraesCS4B01G062400 chr4D 86.695 233 30 1 4814 5046 37254177 37253946 2.410000e-64 257.0
39 TraesCS4B01G062400 chr3B 97.504 681 17 0 1 681 642506123 642505443 0.000000e+00 1164.0
40 TraesCS4B01G062400 chr3B 97.357 681 18 0 1 681 756703992 756703312 0.000000e+00 1158.0
41 TraesCS4B01G062400 chr3B 97.357 681 17 1 1 681 642499260 642498581 0.000000e+00 1157.0
42 TraesCS4B01G062400 chr7B 97.214 682 18 1 1 681 699294573 699293892 0.000000e+00 1153.0
43 TraesCS4B01G062400 chr7B 92.222 90 7 0 857 946 655683765 655683854 1.970000e-25 128.0
44 TraesCS4B01G062400 chr2A 99.083 109 1 0 4272 4380 555342222 555342330 5.320000e-46 196.0
45 TraesCS4B01G062400 chr2A 97.391 115 2 1 4267 4381 507071157 507071270 1.910000e-45 195.0
46 TraesCS4B01G062400 chr2A 95.798 119 3 2 4262 4380 58791506 58791622 2.480000e-44 191.0
47 TraesCS4B01G062400 chr5A 97.391 115 1 2 4267 4380 69844901 69844788 1.910000e-45 195.0
48 TraesCS4B01G062400 chr5A 96.581 117 4 0 4267 4383 495320836 495320952 1.910000e-45 195.0
49 TraesCS4B01G062400 chr5A 98.165 109 2 0 4273 4381 7007436 7007328 2.480000e-44 191.0
50 TraesCS4B01G062400 chr5A 95.082 122 5 1 4260 4380 170093772 170093651 2.480000e-44 191.0
51 TraesCS4B01G062400 chr1D 98.214 112 1 1 4269 4380 247521068 247520958 1.910000e-45 195.0
52 TraesCS4B01G062400 chr2D 95.763 118 5 0 4273 4390 90361357 90361240 2.480000e-44 191.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G062400 chr4B 54035586 54042311 6725 True 12421.0 12421 100.000000 1 6726 1 chr4B.!!$R1 6725
1 TraesCS4B01G062400 chr4B 122560472 122561835 1363 False 2368.0 2368 98.021000 1545 2907 1 chr4B.!!$F1 1362
2 TraesCS4B01G062400 chr4B 54346264 54349900 3636 True 716.0 987 88.597333 1146 5682 3 chr4B.!!$R3 4536
3 TraesCS4B01G062400 chr6B 337939235 337940595 1360 False 2486.0 2486 99.633000 1545 2905 1 chr6B.!!$F1 1360
4 TraesCS4B01G062400 chr6B 698979878 698981237 1359 False 2446.0 2446 99.118000 1546 2906 1 chr6B.!!$F3 1360
5 TraesCS4B01G062400 chr6B 683223585 683224265 680 False 1153.0 1153 97.210000 1 681 1 chr6B.!!$F2 680
6 TraesCS4B01G062400 chr1B 661568905 661570267 1362 True 2473.0 2473 99.413000 1546 2908 1 chr1B.!!$R3 1362
7 TraesCS4B01G062400 chr1B 623107515 623108870 1355 False 2438.0 2438 99.116000 1549 2905 1 chr1B.!!$F3 1356
8 TraesCS4B01G062400 chr1B 354262532 354263212 680 False 1170.0 1170 97.651000 1 681 1 chr1B.!!$F2 680
9 TraesCS4B01G062400 chr1B 406393231 406393911 680 True 1158.0 1158 97.357000 1 681 1 chr1B.!!$R1 680
10 TraesCS4B01G062400 chr1B 420258888 420259569 681 True 1158.0 1158 97.365000 1 681 1 chr1B.!!$R2 680
11 TraesCS4B01G062400 chr1B 354255687 354256365 678 False 1157.0 1157 97.357000 1 681 1 chr1B.!!$F1 680
12 TraesCS4B01G062400 chr7A 736541923 736543280 1357 True 2470.0 2470 99.485000 1549 2906 1 chr7A.!!$R3 1357
13 TraesCS4B01G062400 chr7A 194168696 194170061 1365 True 2468.0 2468 99.268000 1539 2905 1 chr7A.!!$R2 1366
14 TraesCS4B01G062400 chr7A 119787296 119788648 1352 True 2455.0 2455 99.409000 1549 2901 1 chr7A.!!$R1 1352
15 TraesCS4B01G062400 chr5B 42257070 42258426 1356 True 2457.0 2457 99.337000 1547 2904 1 chr5B.!!$R1 1357
16 TraesCS4B01G062400 chr4A 565300952 565306536 5584 False 702.1 2015 90.153500 675 6726 8 chr4A.!!$F3 6051
17 TraesCS4B01G062400 chr4A 565043155 565043705 550 False 518.0 518 83.709000 5258 5831 1 chr4A.!!$F2 573
18 TraesCS4B01G062400 chr4D 37048391 37055926 7535 True 1079.8 1923 91.768800 675 6726 5 chr4D.!!$R3 6051
19 TraesCS4B01G062400 chr4D 37134853 37135403 550 True 523.0 523 83.854000 5258 5831 1 chr4D.!!$R1 573
20 TraesCS4B01G062400 chr4D 37261763 37262467 704 True 357.0 357 76.573000 3130 3861 1 chr4D.!!$R2 731
21 TraesCS4B01G062400 chr4D 37253171 37254177 1006 True 355.0 453 85.858500 4814 5682 2 chr4D.!!$R4 868
22 TraesCS4B01G062400 chr3B 642505443 642506123 680 True 1164.0 1164 97.504000 1 681 1 chr3B.!!$R2 680
23 TraesCS4B01G062400 chr3B 756703312 756703992 680 True 1158.0 1158 97.357000 1 681 1 chr3B.!!$R3 680
24 TraesCS4B01G062400 chr3B 642498581 642499260 679 True 1157.0 1157 97.357000 1 681 1 chr3B.!!$R1 680
25 TraesCS4B01G062400 chr7B 699293892 699294573 681 True 1153.0 1153 97.214000 1 681 1 chr7B.!!$R1 680

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
888 3966 0.387929 GGCGTCATCTCCGTCCAATA 59.612 55.000 0.0 0.0 0.00 1.90 F
1405 4584 0.317854 GAAGGCGTGGCAGAACAAAC 60.318 55.000 0.0 0.0 0.00 2.93 F
1543 4722 1.067821 GCCATCCACGGACAACAAAAA 59.932 47.619 0.0 0.0 0.00 1.94 F
2927 6106 1.476891 TGAGGTAGCAAGATCACGGAC 59.523 52.381 0.0 0.0 0.00 4.79 F
4129 7457 0.687354 GTTCTGGTCCTCCAAGAGCA 59.313 55.000 0.0 0.0 43.81 4.26 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2373 5552 0.249073 CGGTGCTTCCCTACATCGAG 60.249 60.000 0.00 0.0 42.96 4.04 R
2979 6217 0.683412 AACCGAGTAACACCCTGACC 59.317 55.000 0.00 0.0 0.00 4.02 R
3389 6702 2.281484 GGAGGCGTTGGCTTCACA 60.281 61.111 0.71 0.0 46.33 3.58 R
4363 7712 0.033796 ACATACTCCCTCCGTTCCGA 60.034 55.000 0.00 0.0 0.00 4.55 R
5922 10042 0.889994 ACATGGCGCACAATGATGTT 59.110 45.000 19.83 0.0 37.82 2.71 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
130 131 5.670792 AGTAACATACCGATGACAAAGGA 57.329 39.130 6.57 0.00 36.48 3.36
374 376 0.744874 GAGATCGGGGACATGACGAA 59.255 55.000 0.00 0.00 40.27 3.85
428 430 8.652810 TCGATATATTGGACGACTATATTCGA 57.347 34.615 18.14 16.80 41.78 3.71
664 667 1.425448 CCAACAAGGAAGGAGGGAGTT 59.575 52.381 0.00 0.00 41.22 3.01
684 687 1.353358 TCTACTCCCGGTGAGAGACAA 59.647 52.381 22.16 4.44 44.42 3.18
723 726 1.068753 TTGTTTGCACAATGCCGGG 59.931 52.632 2.18 0.00 44.23 5.73
724 727 1.395045 TTGTTTGCACAATGCCGGGA 61.395 50.000 2.18 0.00 44.23 5.14
765 769 7.333528 TGCTCAAAATGGCCTATAAACTAAG 57.666 36.000 3.32 0.00 0.00 2.18
766 770 6.321181 TGCTCAAAATGGCCTATAAACTAAGG 59.679 38.462 3.32 0.00 35.86 2.69
823 828 6.715344 TTAAATCGAGCGTGTATTTCTTGT 57.285 33.333 0.00 0.00 0.00 3.16
888 3966 0.387929 GGCGTCATCTCCGTCCAATA 59.612 55.000 0.00 0.00 0.00 1.90
925 4004 2.350522 GCGAAGAGGAGAATCAAAGCA 58.649 47.619 0.00 0.00 36.25 3.91
929 4008 5.171476 CGAAGAGGAGAATCAAAGCAACTA 58.829 41.667 0.00 0.00 36.25 2.24
962 4041 2.825264 GCTAGCCAGCTACCCCTG 59.175 66.667 2.29 0.00 44.93 4.45
963 4042 2.825264 CTAGCCAGCTACCCCTGC 59.175 66.667 0.00 0.00 0.00 4.85
964 4043 1.764054 CTAGCCAGCTACCCCTGCT 60.764 63.158 0.00 0.00 42.06 4.24
1115 4202 4.907034 CGATCCCGTCGCCACTCG 62.907 72.222 0.00 0.00 44.33 4.18
1116 4203 3.515286 GATCCCGTCGCCACTCGA 61.515 66.667 0.00 0.00 46.29 4.04
1219 4306 5.001232 CGTTTAGGGAAACTTTGAGGATCA 58.999 41.667 0.00 0.00 42.78 2.92
1220 4307 5.472137 CGTTTAGGGAAACTTTGAGGATCAA 59.528 40.000 0.00 0.00 46.69 2.57
1405 4584 0.317854 GAAGGCGTGGCAGAACAAAC 60.318 55.000 0.00 0.00 0.00 2.93
1543 4722 1.067821 GCCATCCACGGACAACAAAAA 59.932 47.619 0.00 0.00 0.00 1.94
1652 4831 1.891919 GGGACACACGCACACACAT 60.892 57.895 0.00 0.00 0.00 3.21
2925 6104 2.215907 CTGAGGTAGCAAGATCACGG 57.784 55.000 0.00 0.00 0.00 4.94
2926 6105 1.751351 CTGAGGTAGCAAGATCACGGA 59.249 52.381 0.00 0.00 0.00 4.69
2927 6106 1.476891 TGAGGTAGCAAGATCACGGAC 59.523 52.381 0.00 0.00 0.00 4.79
2928 6107 1.476891 GAGGTAGCAAGATCACGGACA 59.523 52.381 0.00 0.00 0.00 4.02
2929 6108 1.899814 AGGTAGCAAGATCACGGACAA 59.100 47.619 0.00 0.00 0.00 3.18
2930 6109 2.000447 GGTAGCAAGATCACGGACAAC 59.000 52.381 0.00 0.00 0.00 3.32
2931 6110 2.611971 GGTAGCAAGATCACGGACAACA 60.612 50.000 0.00 0.00 0.00 3.33
2932 6111 2.254546 AGCAAGATCACGGACAACAA 57.745 45.000 0.00 0.00 0.00 2.83
2933 6112 2.571212 AGCAAGATCACGGACAACAAA 58.429 42.857 0.00 0.00 0.00 2.83
2934 6113 2.948979 AGCAAGATCACGGACAACAAAA 59.051 40.909 0.00 0.00 0.00 2.44
2978 6216 5.163642 CGATCCTAACACCGAATAGATAGGG 60.164 48.000 0.00 0.00 0.00 3.53
2979 6217 4.413760 TCCTAACACCGAATAGATAGGGG 58.586 47.826 0.00 0.00 0.00 4.79
3312 6625 3.753815 TGTTCTCATCATCAAGGCAACA 58.246 40.909 0.00 0.00 41.41 3.33
3353 6666 2.305927 TCTGACCTGAAAATCACCCTCC 59.694 50.000 0.00 0.00 0.00 4.30
3389 6702 2.961062 GCAATTCAAGCATATCCTGGGT 59.039 45.455 0.00 0.00 0.00 4.51
3432 6745 1.648467 GCTCGCTGGTGTTCCAATCC 61.648 60.000 0.00 0.00 43.81 3.01
3527 6846 7.945664 ACAATTGGGAACATACTTGGTAAGTAA 59.054 33.333 10.83 0.00 46.24 2.24
3560 6882 6.713762 ACTCAATGTTGATCCACTTTCAAA 57.286 33.333 0.00 0.00 36.46 2.69
3922 7250 7.344134 GTTTGGTCCTTATCCTTACATAACCT 58.656 38.462 0.00 0.00 0.00 3.50
4058 7386 0.806868 CTACTTCCGTCGCAGTGGTA 59.193 55.000 5.75 0.00 0.00 3.25
4087 7415 9.116067 GTCACTGAGGAGGTATATATGATACTC 57.884 40.741 0.00 0.00 0.00 2.59
4116 7444 5.299279 ACTTTGTACCACTTGAATGTTCTGG 59.701 40.000 0.00 0.00 0.00 3.86
4129 7457 0.687354 GTTCTGGTCCTCCAAGAGCA 59.313 55.000 0.00 0.00 43.81 4.26
4131 7459 0.687354 TCTGGTCCTCCAAGAGCAAC 59.313 55.000 0.00 0.00 43.22 4.17
4136 7464 2.038557 GGTCCTCCAAGAGCAACAAGTA 59.961 50.000 0.00 0.00 34.37 2.24
4182 7530 7.093988 CCTTGGTATGTGGAATATGTCAAACAA 60.094 37.037 0.00 0.00 30.63 2.83
4186 7534 5.981088 TGTGGAATATGTCAAACAATGCT 57.019 34.783 0.00 0.00 0.00 3.79
4197 7545 6.676950 TGTCAAACAATGCTATGTAAACTGG 58.323 36.000 0.00 0.00 32.02 4.00
4200 7548 6.714810 TCAAACAATGCTATGTAAACTGGACT 59.285 34.615 0.00 0.00 32.02 3.85
4212 7560 7.297936 TGTAAACTGGACTTCTCATCAGTTA 57.702 36.000 7.80 0.00 45.98 2.24
4223 7571 7.701445 ACTTCTCATCAGTTATTAATGCAAGC 58.299 34.615 0.00 0.00 0.00 4.01
4240 7589 3.753272 GCAAGCTGTACTGAAATTCTCCA 59.247 43.478 3.61 0.00 0.00 3.86
4264 7613 5.695851 AAATCTTGCAGTTGAGTTAGTGG 57.304 39.130 0.00 0.00 0.00 4.00
4268 7617 6.299805 TCTTGCAGTTGAGTTAGTGGATAT 57.700 37.500 0.00 0.00 0.00 1.63
4272 7621 7.360113 TGCAGTTGAGTTAGTGGATATATGA 57.640 36.000 0.00 0.00 0.00 2.15
4275 7624 9.360093 GCAGTTGAGTTAGTGGATATATGATAC 57.640 37.037 0.00 0.00 0.00 2.24
4280 7629 8.624670 TGAGTTAGTGGATATATGATACTCCCT 58.375 37.037 0.00 1.90 31.00 4.20
4281 7630 9.127277 GAGTTAGTGGATATATGATACTCCCTC 57.873 40.741 0.00 0.00 0.00 4.30
4283 7632 5.450453 AGTGGATATATGATACTCCCTCCG 58.550 45.833 0.00 0.00 0.00 4.63
4284 7633 5.044030 AGTGGATATATGATACTCCCTCCGT 60.044 44.000 0.00 0.00 0.00 4.69
4285 7634 5.657302 GTGGATATATGATACTCCCTCCGTT 59.343 44.000 0.00 0.00 0.00 4.44
4286 7635 5.892119 TGGATATATGATACTCCCTCCGTTC 59.108 44.000 0.00 0.00 0.00 3.95
4287 7636 5.302313 GGATATATGATACTCCCTCCGTTCC 59.698 48.000 0.00 0.00 0.00 3.62
4288 7637 2.471815 ATGATACTCCCTCCGTTCCA 57.528 50.000 0.00 0.00 0.00 3.53
4290 7639 2.542550 TGATACTCCCTCCGTTCCAAA 58.457 47.619 0.00 0.00 0.00 3.28
4292 7641 3.521937 TGATACTCCCTCCGTTCCAAATT 59.478 43.478 0.00 0.00 0.00 1.82
4294 7643 3.345508 ACTCCCTCCGTTCCAAATTAC 57.654 47.619 0.00 0.00 0.00 1.89
4296 7645 3.055312 ACTCCCTCCGTTCCAAATTACTC 60.055 47.826 0.00 0.00 0.00 2.59
4297 7646 2.093869 TCCCTCCGTTCCAAATTACTCG 60.094 50.000 0.00 0.00 0.00 4.18
4298 7647 2.354403 CCCTCCGTTCCAAATTACTCGT 60.354 50.000 0.00 0.00 0.00 4.18
4299 7648 2.928116 CCTCCGTTCCAAATTACTCGTC 59.072 50.000 0.00 0.00 0.00 4.20
4300 7649 2.597305 CTCCGTTCCAAATTACTCGTCG 59.403 50.000 0.00 0.00 0.00 5.12
4301 7650 1.060122 CCGTTCCAAATTACTCGTCGC 59.940 52.381 0.00 0.00 0.00 5.19
4302 7651 1.722464 CGTTCCAAATTACTCGTCGCA 59.278 47.619 0.00 0.00 0.00 5.10
4303 7652 2.222508 CGTTCCAAATTACTCGTCGCAG 60.223 50.000 0.00 0.00 0.00 5.18
4304 7653 2.991190 GTTCCAAATTACTCGTCGCAGA 59.009 45.455 0.00 0.00 0.00 4.26
4305 7654 3.306917 TCCAAATTACTCGTCGCAGAA 57.693 42.857 0.00 0.00 39.69 3.02
4306 7655 3.655486 TCCAAATTACTCGTCGCAGAAA 58.345 40.909 0.00 0.00 39.69 2.52
4307 7656 4.250464 TCCAAATTACTCGTCGCAGAAAT 58.750 39.130 0.00 0.00 39.69 2.17
4309 7658 4.334443 CAAATTACTCGTCGCAGAAATGG 58.666 43.478 0.00 0.00 39.69 3.16
4310 7659 3.520290 ATTACTCGTCGCAGAAATGGA 57.480 42.857 0.00 0.00 39.69 3.41
4311 7660 3.520290 TTACTCGTCGCAGAAATGGAT 57.480 42.857 0.00 0.00 39.69 3.41
4312 7661 1.645034 ACTCGTCGCAGAAATGGATG 58.355 50.000 0.00 0.00 39.69 3.51
4313 7662 1.066858 ACTCGTCGCAGAAATGGATGT 60.067 47.619 0.00 0.00 39.69 3.06
4314 7663 2.165641 ACTCGTCGCAGAAATGGATGTA 59.834 45.455 0.00 0.00 39.69 2.29
4315 7664 2.535984 CTCGTCGCAGAAATGGATGTAC 59.464 50.000 0.00 0.00 39.69 2.90
4316 7665 1.593006 CGTCGCAGAAATGGATGTACC 59.407 52.381 0.00 0.00 39.69 3.34
4317 7666 2.738643 CGTCGCAGAAATGGATGTACCT 60.739 50.000 0.00 0.00 39.69 3.08
4318 7667 3.490249 CGTCGCAGAAATGGATGTACCTA 60.490 47.826 0.00 0.00 39.69 3.08
4319 7668 4.051922 GTCGCAGAAATGGATGTACCTAG 58.948 47.826 0.00 0.00 39.69 3.02
4320 7669 3.958147 TCGCAGAAATGGATGTACCTAGA 59.042 43.478 0.00 0.00 39.86 2.43
4321 7670 4.404394 TCGCAGAAATGGATGTACCTAGAA 59.596 41.667 0.00 0.00 39.86 2.10
4322 7671 4.508124 CGCAGAAATGGATGTACCTAGAAC 59.492 45.833 0.00 0.00 39.86 3.01
4323 7672 5.675538 GCAGAAATGGATGTACCTAGAACT 58.324 41.667 0.00 0.00 39.86 3.01
4324 7673 6.461092 CGCAGAAATGGATGTACCTAGAACTA 60.461 42.308 0.00 0.00 39.86 2.24
4325 7674 7.272978 GCAGAAATGGATGTACCTAGAACTAA 58.727 38.462 0.00 0.00 39.86 2.24
4326 7675 7.769044 GCAGAAATGGATGTACCTAGAACTAAA 59.231 37.037 0.00 0.00 39.86 1.85
4327 7676 9.667107 CAGAAATGGATGTACCTAGAACTAAAA 57.333 33.333 0.00 0.00 39.86 1.52
4352 7701 6.537453 ACATCTAGATACATCCATACCTGC 57.463 41.667 4.54 0.00 0.00 4.85
4353 7702 5.126222 ACATCTAGATACATCCATACCTGCG 59.874 44.000 4.54 0.00 0.00 5.18
4354 7703 4.918588 TCTAGATACATCCATACCTGCGA 58.081 43.478 0.00 0.00 0.00 5.10
4355 7704 3.944055 AGATACATCCATACCTGCGAC 57.056 47.619 0.00 0.00 0.00 5.19
4356 7705 3.230976 AGATACATCCATACCTGCGACA 58.769 45.455 0.00 0.00 0.00 4.35
4357 7706 3.641436 AGATACATCCATACCTGCGACAA 59.359 43.478 0.00 0.00 0.00 3.18
4358 7707 2.315925 ACATCCATACCTGCGACAAG 57.684 50.000 0.00 0.00 0.00 3.16
4359 7708 1.555075 ACATCCATACCTGCGACAAGT 59.445 47.619 0.00 0.00 0.00 3.16
4360 7709 2.764010 ACATCCATACCTGCGACAAGTA 59.236 45.455 0.00 0.00 0.00 2.24
4361 7710 3.196901 ACATCCATACCTGCGACAAGTAA 59.803 43.478 0.00 0.00 0.00 2.24
4362 7711 4.141711 ACATCCATACCTGCGACAAGTAAT 60.142 41.667 0.00 0.00 0.00 1.89
4363 7712 4.481368 TCCATACCTGCGACAAGTAATT 57.519 40.909 0.00 0.00 0.00 1.40
4364 7713 4.439057 TCCATACCTGCGACAAGTAATTC 58.561 43.478 0.00 0.00 0.00 2.17
4365 7714 3.245284 CCATACCTGCGACAAGTAATTCG 59.755 47.826 0.00 0.00 38.31 3.34
4366 7715 1.722011 ACCTGCGACAAGTAATTCGG 58.278 50.000 0.00 0.00 35.73 4.30
4367 7716 1.274167 ACCTGCGACAAGTAATTCGGA 59.726 47.619 0.00 0.00 35.73 4.55
4368 7717 2.289195 ACCTGCGACAAGTAATTCGGAA 60.289 45.455 0.00 0.00 35.02 4.30
4369 7718 2.093783 CCTGCGACAAGTAATTCGGAAC 59.906 50.000 0.00 0.00 35.02 3.62
4429 7786 7.610580 AATTTGAACCAAAACATAAGGGAGA 57.389 32.000 0.00 0.00 36.90 3.71
4435 7943 8.607713 TGAACCAAAACATAAGGGAGATAGTAA 58.392 33.333 0.00 0.00 0.00 2.24
4507 8017 6.757947 TCATTCCAAGTTGCTTTGAGAAAAAG 59.242 34.615 0.00 0.00 0.00 2.27
4520 8036 7.589221 GCTTTGAGAAAAAGATACAAGTGTCTG 59.411 37.037 0.07 0.00 31.23 3.51
4539 8055 7.012421 AGTGTCTGTGTTTAAAGCTTAGGAAAG 59.988 37.037 0.00 0.00 35.68 2.62
4542 8058 8.833493 GTCTGTGTTTAAAGCTTAGGAAAGTTA 58.167 33.333 0.00 0.00 34.99 2.24
4555 8079 5.296813 AGGAAAGTTATTGCAGCTTAACG 57.703 39.130 11.06 0.00 34.30 3.18
4570 8513 6.076092 GCAGCTTAACGCGAAACATAAAATAG 60.076 38.462 15.93 0.00 45.59 1.73
4593 8536 4.153958 TGAACCATCGTCAAAATTTCCG 57.846 40.909 0.00 0.00 0.00 4.30
4595 8538 3.824414 ACCATCGTCAAAATTTCCGTC 57.176 42.857 0.00 0.00 0.00 4.79
4602 8545 5.448438 TCGTCAAAATTTCCGTCAATCTTG 58.552 37.500 0.00 0.00 0.00 3.02
4605 8548 6.249260 CGTCAAAATTTCCGTCAATCTTGATC 59.751 38.462 0.00 0.00 39.73 2.92
4627 8570 5.712004 TCAAAATTGATACCAGTGCACATG 58.288 37.500 21.04 13.83 31.01 3.21
4653 8597 2.744741 GCTTCTCTTTCCTGCCTACAAC 59.255 50.000 0.00 0.00 0.00 3.32
4665 8609 1.197036 GCCTACAACGGCTGAAAGTTC 59.803 52.381 0.00 0.00 46.63 3.01
4711 8667 7.558081 AGCTTCATAATTTAGGGTTTTCTCCTC 59.442 37.037 0.00 0.00 35.92 3.71
4718 8674 7.709149 ATTTAGGGTTTTCTCCTCTTTCATG 57.291 36.000 0.00 0.00 35.92 3.07
4750 8711 3.644966 ATTCAAGTAGCGATTTCCCCA 57.355 42.857 0.00 0.00 0.00 4.96
4751 8712 3.644966 TTCAAGTAGCGATTTCCCCAT 57.355 42.857 0.00 0.00 0.00 4.00
4752 8713 2.917933 TCAAGTAGCGATTTCCCCATG 58.082 47.619 0.00 0.00 0.00 3.66
4753 8714 2.238646 TCAAGTAGCGATTTCCCCATGT 59.761 45.455 0.00 0.00 0.00 3.21
4798 8761 4.584638 TGGCATACCACTAACCTGATTT 57.415 40.909 0.00 0.00 42.67 2.17
4799 8762 4.929479 TGGCATACCACTAACCTGATTTT 58.071 39.130 0.00 0.00 42.67 1.82
4800 8763 5.329399 TGGCATACCACTAACCTGATTTTT 58.671 37.500 0.00 0.00 42.67 1.94
5440 9559 6.377327 TCAAGTCCTGACATGTTTTCTTTC 57.623 37.500 0.00 0.00 32.42 2.62
5451 9570 4.795970 TGTTTTCTTTCGTCTTCTGCTC 57.204 40.909 0.00 0.00 0.00 4.26
5527 9646 6.140737 CGACAAATTCCTCGCATTATTAAAGC 59.859 38.462 0.00 0.00 0.00 3.51
5530 9649 4.893424 TTCCTCGCATTATTAAAGCACC 57.107 40.909 4.70 0.00 0.00 5.01
5573 9692 7.069455 ACAGGGTATTGGGCTGAATTAATAAAC 59.931 37.037 0.00 0.00 0.00 2.01
5580 9699 8.614469 TTGGGCTGAATTAATAAACTTTTTGG 57.386 30.769 0.00 0.00 0.00 3.28
5748 9867 1.572447 CGCCCTGGTTACAAACACG 59.428 57.895 0.00 0.00 0.00 4.49
5755 9874 3.242936 CCTGGTTACAAACACGGTTGAAG 60.243 47.826 0.96 0.00 32.59 3.02
5849 9969 1.182673 CGCAAACGCTGATATGTTGC 58.817 50.000 0.00 0.00 0.00 4.17
5851 9971 2.179589 GCAAACGCTGATATGTTGCTG 58.820 47.619 0.00 0.00 0.00 4.41
5875 9995 5.461032 AACAACACCTTGTTCAGAAACAA 57.539 34.783 3.92 3.92 45.81 2.83
5922 10042 5.957771 AAACCATAAGGCTGTCATCTCTA 57.042 39.130 0.00 0.00 39.06 2.43
5923 10043 5.957771 AACCATAAGGCTGTCATCTCTAA 57.042 39.130 0.00 0.00 39.06 2.10
5924 10044 5.283457 ACCATAAGGCTGTCATCTCTAAC 57.717 43.478 0.00 0.00 39.06 2.34
5931 10051 5.366460 AGGCTGTCATCTCTAACATCATTG 58.634 41.667 0.00 0.00 0.00 2.82
5934 10054 5.503683 GCTGTCATCTCTAACATCATTGTGC 60.504 44.000 0.00 0.00 35.83 4.57
5937 10057 2.279741 TCTCTAACATCATTGTGCGCC 58.720 47.619 4.18 0.00 35.83 6.53
5947 10067 1.921887 CATTGTGCGCCATGTTTCATC 59.078 47.619 4.18 0.00 0.00 2.92
5951 10071 1.987770 GTGCGCCATGTTTCATCTTTG 59.012 47.619 4.18 0.00 0.00 2.77
5973 10093 5.804639 TGGTATGCAAAGTTGATCTGTACT 58.195 37.500 0.00 0.00 0.00 2.73
5975 10095 5.874810 GGTATGCAAAGTTGATCTGTACTGA 59.125 40.000 4.80 4.80 0.00 3.41
5984 10106 3.701664 TGATCTGTACTGAAGAGGAGCA 58.298 45.455 6.54 0.00 0.00 4.26
6000 10122 1.933853 GAGCACATGATGAACGGTACC 59.066 52.381 0.16 0.16 0.00 3.34
6001 10123 1.277842 AGCACATGATGAACGGTACCA 59.722 47.619 13.54 0.00 0.00 3.25
6003 10125 2.032054 GCACATGATGAACGGTACCATG 59.968 50.000 13.54 8.56 40.12 3.66
6031 10153 1.353694 AGAATCCAAGTCAAGCTGCCT 59.646 47.619 0.00 0.00 0.00 4.75
6032 10154 2.165998 GAATCCAAGTCAAGCTGCCTT 58.834 47.619 0.00 0.00 0.00 4.35
6045 10177 1.753930 CTGCCTTGATGGTGCACATA 58.246 50.000 20.43 7.39 40.72 2.29
6049 10181 2.417243 GCCTTGATGGTGCACATAAACC 60.417 50.000 20.43 0.00 40.72 3.27
6065 10197 7.128263 ACATAAACCATGATGCAAATCGGCA 62.128 40.000 0.00 0.00 42.16 5.69
6075 10207 4.191033 TGCAAATCGGCAAAATCTGATT 57.809 36.364 0.00 0.00 42.22 2.57
6093 10225 5.592104 TGATTGCGTCAGGAAACTATAGA 57.408 39.130 6.78 0.00 40.21 1.98
6094 10226 5.972935 TGATTGCGTCAGGAAACTATAGAA 58.027 37.500 6.78 0.00 40.21 2.10
6095 10227 6.042777 TGATTGCGTCAGGAAACTATAGAAG 58.957 40.000 6.78 0.00 40.21 2.85
6096 10228 3.782046 TGCGTCAGGAAACTATAGAAGC 58.218 45.455 6.78 0.00 40.21 3.86
6097 10229 3.194755 TGCGTCAGGAAACTATAGAAGCA 59.805 43.478 6.78 0.00 40.92 3.91
6098 10230 4.141937 TGCGTCAGGAAACTATAGAAGCAT 60.142 41.667 6.78 0.00 39.29 3.79
6099 10231 4.210120 GCGTCAGGAAACTATAGAAGCATG 59.790 45.833 6.78 3.12 40.21 4.06
6100 10232 5.592054 CGTCAGGAAACTATAGAAGCATGA 58.408 41.667 6.78 5.39 40.21 3.07
6101 10233 5.460419 CGTCAGGAAACTATAGAAGCATGAC 59.540 44.000 18.75 18.75 40.21 3.06
6102 10234 6.578023 GTCAGGAAACTATAGAAGCATGACT 58.422 40.000 20.13 0.00 40.21 3.41
6103 10235 6.699642 GTCAGGAAACTATAGAAGCATGACTC 59.300 42.308 20.13 0.00 40.21 3.36
6104 10236 6.609212 TCAGGAAACTATAGAAGCATGACTCT 59.391 38.462 6.78 0.00 40.21 3.24
6105 10237 6.700960 CAGGAAACTATAGAAGCATGACTCTG 59.299 42.308 6.78 0.00 40.21 3.35
6106 10238 6.609212 AGGAAACTATAGAAGCATGACTCTGA 59.391 38.462 6.78 0.00 40.61 3.27
6107 10239 7.124901 AGGAAACTATAGAAGCATGACTCTGAA 59.875 37.037 6.78 0.00 40.61 3.02
6139 10271 0.937304 CGATAAGATGCCGTGTTGGG 59.063 55.000 0.00 0.00 38.63 4.12
6154 10286 5.105957 CCGTGTTGGGAACATTTTATCATGA 60.106 40.000 0.00 0.00 44.35 3.07
6155 10287 6.029607 CGTGTTGGGAACATTTTATCATGAG 58.970 40.000 0.09 0.00 44.35 2.90
6156 10288 5.807011 GTGTTGGGAACATTTTATCATGAGC 59.193 40.000 0.09 0.00 44.35 4.26
6181 10313 3.838120 TCACTAGCATTCACTCTTGACG 58.162 45.455 0.00 0.00 0.00 4.35
6182 10314 3.506067 TCACTAGCATTCACTCTTGACGA 59.494 43.478 0.00 0.00 0.00 4.20
6183 10315 4.022329 TCACTAGCATTCACTCTTGACGAA 60.022 41.667 0.00 0.00 0.00 3.85
6184 10316 4.867047 CACTAGCATTCACTCTTGACGAAT 59.133 41.667 0.00 0.00 0.00 3.34
6185 10317 5.349817 CACTAGCATTCACTCTTGACGAATT 59.650 40.000 0.00 0.00 0.00 2.17
6186 10318 5.934625 ACTAGCATTCACTCTTGACGAATTT 59.065 36.000 0.00 0.00 0.00 1.82
6187 10319 5.039480 AGCATTCACTCTTGACGAATTTG 57.961 39.130 0.00 0.00 0.00 2.32
6188 10320 4.083110 AGCATTCACTCTTGACGAATTTGG 60.083 41.667 0.00 0.00 0.00 3.28
6189 10321 4.083324 GCATTCACTCTTGACGAATTTGGA 60.083 41.667 0.00 0.00 0.00 3.53
6190 10322 5.392380 GCATTCACTCTTGACGAATTTGGAT 60.392 40.000 0.00 0.00 0.00 3.41
6191 10323 6.615088 CATTCACTCTTGACGAATTTGGATT 58.385 36.000 0.00 0.00 0.00 3.01
6192 10324 5.862924 TCACTCTTGACGAATTTGGATTC 57.137 39.130 0.00 0.00 38.62 2.52
6204 10336 4.946784 ATTTGGATTCGACGAGAAAAGG 57.053 40.909 0.00 0.00 42.91 3.11
6205 10337 1.722011 TGGATTCGACGAGAAAAGGC 58.278 50.000 0.00 0.00 42.91 4.35
6206 10338 1.001520 TGGATTCGACGAGAAAAGGCA 59.998 47.619 0.00 0.00 42.91 4.75
6207 10339 2.280628 GGATTCGACGAGAAAAGGCAT 58.719 47.619 0.00 0.00 42.91 4.40
6208 10340 2.285488 GGATTCGACGAGAAAAGGCATC 59.715 50.000 0.00 0.00 42.91 3.91
6209 10341 2.448926 TTCGACGAGAAAAGGCATCA 57.551 45.000 0.00 0.00 35.61 3.07
6210 10342 1.996292 TCGACGAGAAAAGGCATCAG 58.004 50.000 0.00 0.00 0.00 2.90
6211 10343 0.371645 CGACGAGAAAAGGCATCAGC 59.628 55.000 0.00 0.00 41.10 4.26
6212 10344 1.731720 GACGAGAAAAGGCATCAGCT 58.268 50.000 0.00 0.00 41.70 4.24
6213 10345 1.396301 GACGAGAAAAGGCATCAGCTG 59.604 52.381 7.63 7.63 41.70 4.24
6214 10346 1.271054 ACGAGAAAAGGCATCAGCTGT 60.271 47.619 14.67 0.00 41.70 4.40
6215 10347 2.028112 ACGAGAAAAGGCATCAGCTGTA 60.028 45.455 14.67 0.48 41.70 2.74
6216 10348 3.201290 CGAGAAAAGGCATCAGCTGTAT 58.799 45.455 14.67 3.15 41.70 2.29
6217 10349 3.247173 CGAGAAAAGGCATCAGCTGTATC 59.753 47.826 14.67 3.53 41.70 2.24
6218 10350 4.450053 GAGAAAAGGCATCAGCTGTATCT 58.550 43.478 14.67 6.80 41.70 1.98
6219 10351 4.450053 AGAAAAGGCATCAGCTGTATCTC 58.550 43.478 14.67 1.38 41.70 2.75
6220 10352 4.163839 AGAAAAGGCATCAGCTGTATCTCT 59.836 41.667 14.67 3.74 41.70 3.10
6221 10353 4.500499 AAAGGCATCAGCTGTATCTCTT 57.500 40.909 14.67 9.48 41.70 2.85
6233 10365 6.740002 CAGCTGTATCTCTTTTGACGAATTTG 59.260 38.462 5.25 0.00 0.00 2.32
6251 10383 7.554243 GAATTTGGATTCGACAAGAAAAGAC 57.446 36.000 0.00 0.00 42.91 3.01
6252 10384 6.633500 ATTTGGATTCGACAAGAAAAGACA 57.367 33.333 0.00 0.00 42.91 3.41
6253 10385 6.633500 TTTGGATTCGACAAGAAAAGACAT 57.367 33.333 0.00 0.00 42.91 3.06
6254 10386 5.862924 TGGATTCGACAAGAAAAGACATC 57.137 39.130 0.00 0.00 42.91 3.06
6255 10387 5.304778 TGGATTCGACAAGAAAAGACATCA 58.695 37.500 0.00 0.00 42.91 3.07
6256 10388 5.409520 TGGATTCGACAAGAAAAGACATCAG 59.590 40.000 0.00 0.00 42.91 2.90
6257 10389 5.163814 GGATTCGACAAGAAAAGACATCAGG 60.164 44.000 0.00 0.00 42.91 3.86
6258 10390 4.336889 TCGACAAGAAAAGACATCAGGT 57.663 40.909 0.00 0.00 0.00 4.00
6259 10391 4.058124 TCGACAAGAAAAGACATCAGGTG 58.942 43.478 0.00 0.00 0.00 4.00
6260 10392 3.809832 CGACAAGAAAAGACATCAGGTGT 59.190 43.478 0.00 0.00 45.83 4.16
6261 10393 4.988540 CGACAAGAAAAGACATCAGGTGTA 59.011 41.667 0.00 0.00 42.36 2.90
6262 10394 5.639506 CGACAAGAAAAGACATCAGGTGTAT 59.360 40.000 0.00 0.00 42.36 2.29
6263 10395 6.811665 CGACAAGAAAAGACATCAGGTGTATA 59.188 38.462 0.00 0.00 42.36 1.47
6264 10396 7.330946 CGACAAGAAAAGACATCAGGTGTATAA 59.669 37.037 0.00 0.00 42.36 0.98
6283 10415 8.607459 GTGTATAAGCAGGTATATCATGAATGC 58.393 37.037 0.00 4.03 0.00 3.56
6284 10416 8.320617 TGTATAAGCAGGTATATCATGAATGCA 58.679 33.333 0.00 0.00 34.71 3.96
6327 10473 1.527433 GGCAAAGCACAGGGTCTTCC 61.527 60.000 0.00 0.00 0.00 3.46
6335 10481 1.203523 CACAGGGTCTTCCTTCTCTCG 59.796 57.143 0.00 0.00 45.47 4.04
6535 10681 1.918293 ACCAGGCACCCATCTTCGA 60.918 57.895 0.00 0.00 0.00 3.71
6652 10798 3.305398 ACTTTACACCTCTGAGCTTCG 57.695 47.619 0.00 0.00 0.00 3.79
6683 10829 3.717294 GGGGAAGAAGCGCTCCCA 61.717 66.667 28.00 0.00 44.01 4.37
6694 10840 1.073199 CGCTCCCAGGGAAGTTGTT 59.927 57.895 10.32 0.00 0.00 2.83
6698 10844 3.741388 CGCTCCCAGGGAAGTTGTTATAG 60.741 52.174 10.32 0.00 0.00 1.31
6708 10854 5.398012 GGGAAGTTGTTATAGCCAGGAAGAT 60.398 44.000 0.00 0.00 0.00 2.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
186 187 4.785346 ACCTGGATGCTCATATTGTCTT 57.215 40.909 0.00 0.00 0.00 3.01
189 190 3.745480 CGGAACCTGGATGCTCATATTGT 60.745 47.826 0.00 0.00 0.00 2.71
277 278 2.991190 GTCATCGAAACCTTAAGCGTGA 59.009 45.455 0.00 0.34 0.00 4.35
428 430 4.714632 TCATTCAGAACCTTTCCGAAGTT 58.285 39.130 0.00 0.00 30.31 2.66
447 449 4.777463 ACTCCGAAAAATACCCGAATCAT 58.223 39.130 0.00 0.00 0.00 2.45
664 667 0.989602 TGTCTCTCACCGGGAGTAGA 59.010 55.000 6.32 11.15 44.40 2.59
684 687 2.305343 ACTTGCCTTCTCATGCTCTCTT 59.695 45.455 0.00 0.00 0.00 2.85
765 769 4.148825 ATGTCGCTCGACCAGGCC 62.149 66.667 18.23 0.00 43.97 5.19
766 770 2.583593 GATGTCGCTCGACCAGGC 60.584 66.667 18.23 3.27 43.97 4.85
811 816 9.691362 ACAATCCACAAAATACAAGAAATACAC 57.309 29.630 0.00 0.00 0.00 2.90
823 828 3.242867 TGGGCCAACAATCCACAAAATA 58.757 40.909 2.13 0.00 0.00 1.40
866 871 2.202756 GACGGAGATGACGCCCAC 60.203 66.667 0.00 0.00 32.32 4.61
897 3975 3.376935 CTCCTCTTCGCCCACGCAT 62.377 63.158 0.00 0.00 39.84 4.73
925 4004 1.298014 GCTGCTGCCAGGAGTAGTT 59.702 57.895 15.02 0.00 39.54 2.24
958 4037 1.226030 GCAAAGCAAAGCAAGCAGGG 61.226 55.000 0.00 0.00 0.00 4.45
961 4040 1.574134 GAAGCAAAGCAAAGCAAGCA 58.426 45.000 0.00 0.00 0.00 3.91
962 4041 0.863799 GGAAGCAAAGCAAAGCAAGC 59.136 50.000 0.00 0.00 0.00 4.01
963 4042 1.505425 GGGAAGCAAAGCAAAGCAAG 58.495 50.000 0.00 0.00 0.00 4.01
964 4043 0.106521 GGGGAAGCAAAGCAAAGCAA 59.893 50.000 0.00 0.00 0.00 3.91
1079 4166 1.751032 CGATCGGGGGAGAAGAGAAGA 60.751 57.143 7.38 0.00 0.00 2.87
1080 4167 0.671251 CGATCGGGGGAGAAGAGAAG 59.329 60.000 7.38 0.00 0.00 2.85
1081 4168 0.257905 TCGATCGGGGGAGAAGAGAA 59.742 55.000 16.41 0.00 0.00 2.87
1082 4169 0.478942 ATCGATCGGGGGAGAAGAGA 59.521 55.000 16.41 0.00 0.00 3.10
1083 4170 0.885196 GATCGATCGGGGGAGAAGAG 59.115 60.000 16.41 0.00 0.00 2.85
1219 4306 2.443416 GTCGGGACCCATTAAGCTTTT 58.557 47.619 12.15 0.00 0.00 2.27
1220 4307 1.340697 GGTCGGGACCCATTAAGCTTT 60.341 52.381 12.15 0.00 45.68 3.51
1428 4607 3.938963 ACTAATTTTGTCATCATCGCGGT 59.061 39.130 6.13 0.00 0.00 5.68
1652 4831 1.546029 CTTGTCTGGTGAGGACGATGA 59.454 52.381 0.00 0.00 36.58 2.92
2373 5552 0.249073 CGGTGCTTCCCTACATCGAG 60.249 60.000 0.00 0.00 42.96 4.04
2908 6087 1.476891 TGTCCGTGATCTTGCTACCTC 59.523 52.381 0.00 0.00 0.00 3.85
2909 6088 1.557099 TGTCCGTGATCTTGCTACCT 58.443 50.000 0.00 0.00 0.00 3.08
2910 6089 2.000447 GTTGTCCGTGATCTTGCTACC 59.000 52.381 0.00 0.00 0.00 3.18
2911 6090 2.683968 TGTTGTCCGTGATCTTGCTAC 58.316 47.619 0.00 0.00 0.00 3.58
2912 6091 3.394674 TTGTTGTCCGTGATCTTGCTA 57.605 42.857 0.00 0.00 0.00 3.49
2913 6092 2.254546 TTGTTGTCCGTGATCTTGCT 57.745 45.000 0.00 0.00 0.00 3.91
2914 6093 3.347958 TTTTGTTGTCCGTGATCTTGC 57.652 42.857 0.00 0.00 0.00 4.01
2915 6094 5.332506 GCAATTTTTGTTGTCCGTGATCTTG 60.333 40.000 0.00 0.00 0.00 3.02
2916 6095 4.744631 GCAATTTTTGTTGTCCGTGATCTT 59.255 37.500 0.00 0.00 0.00 2.40
2917 6096 4.037923 AGCAATTTTTGTTGTCCGTGATCT 59.962 37.500 0.00 0.00 0.00 2.75
2918 6097 4.298332 AGCAATTTTTGTTGTCCGTGATC 58.702 39.130 0.00 0.00 0.00 2.92
2919 6098 4.320608 AGCAATTTTTGTTGTCCGTGAT 57.679 36.364 0.00 0.00 0.00 3.06
2920 6099 3.791973 AGCAATTTTTGTTGTCCGTGA 57.208 38.095 0.00 0.00 0.00 4.35
2921 6100 5.277825 TCTTAGCAATTTTTGTTGTCCGTG 58.722 37.500 0.00 0.00 0.00 4.94
2922 6101 5.508200 TCTTAGCAATTTTTGTTGTCCGT 57.492 34.783 0.00 0.00 0.00 4.69
2923 6102 5.108405 CGTTCTTAGCAATTTTTGTTGTCCG 60.108 40.000 0.00 0.00 0.00 4.79
2924 6103 5.974751 TCGTTCTTAGCAATTTTTGTTGTCC 59.025 36.000 0.00 0.00 0.00 4.02
2925 6104 7.444558 TTCGTTCTTAGCAATTTTTGTTGTC 57.555 32.000 0.00 0.00 0.00 3.18
2926 6105 7.820044 TTTCGTTCTTAGCAATTTTTGTTGT 57.180 28.000 0.00 0.00 0.00 3.32
2927 6106 7.634432 GGTTTTCGTTCTTAGCAATTTTTGTTG 59.366 33.333 0.00 0.00 0.00 3.33
2928 6107 7.201574 GGGTTTTCGTTCTTAGCAATTTTTGTT 60.202 33.333 0.00 0.00 0.00 2.83
2929 6108 6.256975 GGGTTTTCGTTCTTAGCAATTTTTGT 59.743 34.615 0.00 0.00 0.00 2.83
2930 6109 6.561350 CGGGTTTTCGTTCTTAGCAATTTTTG 60.561 38.462 0.00 0.00 0.00 2.44
2931 6110 5.460748 CGGGTTTTCGTTCTTAGCAATTTTT 59.539 36.000 0.00 0.00 0.00 1.94
2932 6111 4.979815 CGGGTTTTCGTTCTTAGCAATTTT 59.020 37.500 0.00 0.00 0.00 1.82
2933 6112 4.276431 TCGGGTTTTCGTTCTTAGCAATTT 59.724 37.500 0.00 0.00 0.00 1.82
2934 6113 3.816523 TCGGGTTTTCGTTCTTAGCAATT 59.183 39.130 0.00 0.00 0.00 2.32
2978 6216 1.190178 ACCGAGTAACACCCTGACCC 61.190 60.000 0.00 0.00 0.00 4.46
2979 6217 0.683412 AACCGAGTAACACCCTGACC 59.317 55.000 0.00 0.00 0.00 4.02
3329 6642 4.338879 AGGGTGATTTTCAGGTCAGAATG 58.661 43.478 0.00 0.00 37.54 2.67
3353 6666 3.380320 TGAATTGCTCAATCTGCATGGAG 59.620 43.478 8.12 8.12 40.34 3.86
3389 6702 2.281484 GGAGGCGTTGGCTTCACA 60.281 61.111 0.71 0.00 46.33 3.58
3432 6745 2.756760 CCACTGATTCTGGATGGGTTTG 59.243 50.000 0.00 0.00 0.00 2.93
3526 6845 8.859090 TGGATCAACATTGAGTTATCTTGTTTT 58.141 29.630 0.23 0.00 41.08 2.43
3527 6846 8.299570 GTGGATCAACATTGAGTTATCTTGTTT 58.700 33.333 0.00 0.00 41.08 2.83
3578 6900 6.422776 AAGTAATCAAAACGATGCAGGTAG 57.577 37.500 0.00 0.00 33.40 3.18
3746 7073 6.097554 CCCTGCCATTGTTAACCAATACATAA 59.902 38.462 2.48 0.00 41.93 1.90
3922 7250 3.813166 GCAAGGAGTACAAACAGCAACTA 59.187 43.478 0.00 0.00 0.00 2.24
4058 7386 6.722328 TCATATATACCTCCTCAGTGACGAT 58.278 40.000 0.00 0.00 0.00 3.73
4087 7415 7.730364 ACATTCAAGTGGTACAAAGTAGAAG 57.270 36.000 0.00 0.00 44.16 2.85
4116 7444 2.262423 ACTTGTTGCTCTTGGAGGAC 57.738 50.000 0.00 0.00 27.75 3.85
4156 7504 6.376864 TGTTTGACATATTCCACATACCAAGG 59.623 38.462 0.00 0.00 0.00 3.61
4157 7505 7.389803 TGTTTGACATATTCCACATACCAAG 57.610 36.000 0.00 0.00 0.00 3.61
4182 7530 6.299805 TGAGAAGTCCAGTTTACATAGCAT 57.700 37.500 0.00 0.00 0.00 3.79
4186 7534 7.482169 ACTGATGAGAAGTCCAGTTTACATA 57.518 36.000 0.00 0.00 36.57 2.29
4196 7544 7.792374 TGCATTAATAACTGATGAGAAGTCC 57.208 36.000 0.00 0.00 0.00 3.85
4197 7545 7.854916 GCTTGCATTAATAACTGATGAGAAGTC 59.145 37.037 0.00 0.00 0.00 3.01
4200 7548 7.337689 ACAGCTTGCATTAATAACTGATGAGAA 59.662 33.333 0.00 0.00 0.00 2.87
4212 7560 8.059798 AGAATTTCAGTACAGCTTGCATTAAT 57.940 30.769 0.00 0.00 0.00 1.40
4240 7589 7.168219 TCCACTAACTCAACTGCAAGATTTAT 58.832 34.615 0.00 0.00 37.43 1.40
4249 7598 9.360093 GTATCATATATCCACTAACTCAACTGC 57.640 37.037 0.00 0.00 0.00 4.40
4264 7613 5.892119 TGGAACGGAGGGAGTATCATATATC 59.108 44.000 0.00 0.00 36.25 1.63
4268 7617 3.605726 TGGAACGGAGGGAGTATCATA 57.394 47.619 0.00 0.00 36.25 2.15
4272 7621 4.720273 AGTAATTTGGAACGGAGGGAGTAT 59.280 41.667 0.00 0.00 0.00 2.12
4275 7624 3.532542 GAGTAATTTGGAACGGAGGGAG 58.467 50.000 0.00 0.00 0.00 4.30
4277 7626 2.277084 CGAGTAATTTGGAACGGAGGG 58.723 52.381 0.00 0.00 0.00 4.30
4278 7627 2.928116 GACGAGTAATTTGGAACGGAGG 59.072 50.000 0.00 0.00 0.00 4.30
4280 7629 2.598589 CGACGAGTAATTTGGAACGGA 58.401 47.619 0.00 0.00 0.00 4.69
4281 7630 1.060122 GCGACGAGTAATTTGGAACGG 59.940 52.381 0.00 0.00 0.00 4.44
4283 7632 2.991190 TCTGCGACGAGTAATTTGGAAC 59.009 45.455 0.00 0.00 0.00 3.62
4284 7633 3.306917 TCTGCGACGAGTAATTTGGAA 57.693 42.857 0.00 0.00 0.00 3.53
4285 7634 3.306917 TTCTGCGACGAGTAATTTGGA 57.693 42.857 0.00 0.00 0.00 3.53
4286 7635 4.334443 CATTTCTGCGACGAGTAATTTGG 58.666 43.478 0.00 0.00 0.00 3.28
4287 7636 4.092821 TCCATTTCTGCGACGAGTAATTTG 59.907 41.667 0.00 0.00 0.00 2.32
4288 7637 4.250464 TCCATTTCTGCGACGAGTAATTT 58.750 39.130 0.00 0.00 0.00 1.82
4290 7639 3.520290 TCCATTTCTGCGACGAGTAAT 57.480 42.857 0.00 0.00 0.00 1.89
4292 7641 2.165641 ACATCCATTTCTGCGACGAGTA 59.834 45.455 0.00 0.00 0.00 2.59
4294 7643 1.645034 ACATCCATTTCTGCGACGAG 58.355 50.000 0.00 0.00 0.00 4.18
4296 7645 1.593006 GGTACATCCATTTCTGCGACG 59.407 52.381 0.00 0.00 35.97 5.12
4297 7646 2.906354 AGGTACATCCATTTCTGCGAC 58.094 47.619 0.00 0.00 39.02 5.19
4298 7647 3.958147 TCTAGGTACATCCATTTCTGCGA 59.042 43.478 0.00 0.00 39.02 5.10
4299 7648 4.322080 TCTAGGTACATCCATTTCTGCG 57.678 45.455 0.00 0.00 39.02 5.18
4300 7649 5.675538 AGTTCTAGGTACATCCATTTCTGC 58.324 41.667 0.00 0.00 39.02 4.26
4301 7650 9.667107 TTTTAGTTCTAGGTACATCCATTTCTG 57.333 33.333 0.00 0.00 39.02 3.02
4326 7675 8.700051 GCAGGTATGGATGTATCTAGATGTATT 58.300 37.037 15.79 0.00 0.00 1.89
4327 7676 7.013750 CGCAGGTATGGATGTATCTAGATGTAT 59.986 40.741 15.79 9.11 0.00 2.29
4328 7677 6.318900 CGCAGGTATGGATGTATCTAGATGTA 59.681 42.308 15.79 4.44 0.00 2.29
4329 7678 5.126222 CGCAGGTATGGATGTATCTAGATGT 59.874 44.000 15.79 1.25 0.00 3.06
4330 7679 5.358160 TCGCAGGTATGGATGTATCTAGATG 59.642 44.000 15.79 0.00 0.00 2.90
4331 7680 5.358442 GTCGCAGGTATGGATGTATCTAGAT 59.642 44.000 10.73 10.73 0.00 1.98
4332 7681 4.700692 GTCGCAGGTATGGATGTATCTAGA 59.299 45.833 0.00 0.00 0.00 2.43
4333 7682 4.459337 TGTCGCAGGTATGGATGTATCTAG 59.541 45.833 0.00 0.00 0.00 2.43
4334 7683 4.403734 TGTCGCAGGTATGGATGTATCTA 58.596 43.478 0.00 0.00 0.00 1.98
4335 7684 3.230976 TGTCGCAGGTATGGATGTATCT 58.769 45.455 0.00 0.00 0.00 1.98
4336 7685 3.660501 TGTCGCAGGTATGGATGTATC 57.339 47.619 0.00 0.00 0.00 2.24
4337 7686 3.388024 ACTTGTCGCAGGTATGGATGTAT 59.612 43.478 0.00 0.00 0.00 2.29
4338 7687 2.764010 ACTTGTCGCAGGTATGGATGTA 59.236 45.455 0.00 0.00 0.00 2.29
4339 7688 1.555075 ACTTGTCGCAGGTATGGATGT 59.445 47.619 0.00 0.00 0.00 3.06
4340 7689 2.315925 ACTTGTCGCAGGTATGGATG 57.684 50.000 0.00 0.00 0.00 3.51
4341 7690 4.689612 ATTACTTGTCGCAGGTATGGAT 57.310 40.909 3.46 0.00 0.00 3.41
4342 7691 4.439057 GAATTACTTGTCGCAGGTATGGA 58.561 43.478 3.46 0.00 0.00 3.41
4343 7692 3.245284 CGAATTACTTGTCGCAGGTATGG 59.755 47.826 3.46 0.00 0.00 2.74
4344 7693 3.245284 CCGAATTACTTGTCGCAGGTATG 59.755 47.826 3.46 0.00 35.93 2.39
4345 7694 3.131577 TCCGAATTACTTGTCGCAGGTAT 59.868 43.478 3.46 0.00 35.93 2.73
4346 7695 2.492881 TCCGAATTACTTGTCGCAGGTA 59.507 45.455 0.00 0.00 35.93 3.08
4347 7696 1.274167 TCCGAATTACTTGTCGCAGGT 59.726 47.619 0.00 0.91 35.93 4.00
4348 7697 2.004583 TCCGAATTACTTGTCGCAGG 57.995 50.000 0.00 0.00 35.93 4.85
4349 7698 2.222508 CGTTCCGAATTACTTGTCGCAG 60.223 50.000 0.00 0.00 35.93 5.18
4350 7699 1.722464 CGTTCCGAATTACTTGTCGCA 59.278 47.619 0.00 0.00 35.93 5.10
4351 7700 1.060122 CCGTTCCGAATTACTTGTCGC 59.940 52.381 0.00 0.00 35.93 5.19
4352 7701 2.597305 CTCCGTTCCGAATTACTTGTCG 59.403 50.000 0.00 0.00 37.01 4.35
4353 7702 2.928116 CCTCCGTTCCGAATTACTTGTC 59.072 50.000 0.00 0.00 0.00 3.18
4354 7703 2.354403 CCCTCCGTTCCGAATTACTTGT 60.354 50.000 0.00 0.00 0.00 3.16
4355 7704 2.093869 TCCCTCCGTTCCGAATTACTTG 60.094 50.000 0.00 0.00 0.00 3.16
4356 7705 2.167900 CTCCCTCCGTTCCGAATTACTT 59.832 50.000 0.00 0.00 0.00 2.24
4357 7706 1.755380 CTCCCTCCGTTCCGAATTACT 59.245 52.381 0.00 0.00 0.00 2.24
4358 7707 1.479730 ACTCCCTCCGTTCCGAATTAC 59.520 52.381 0.00 0.00 0.00 1.89
4359 7708 1.856629 ACTCCCTCCGTTCCGAATTA 58.143 50.000 0.00 0.00 0.00 1.40
4360 7709 1.856629 TACTCCCTCCGTTCCGAATT 58.143 50.000 0.00 0.00 0.00 2.17
4361 7710 1.687123 CATACTCCCTCCGTTCCGAAT 59.313 52.381 0.00 0.00 0.00 3.34
4362 7711 1.108776 CATACTCCCTCCGTTCCGAA 58.891 55.000 0.00 0.00 0.00 4.30
4363 7712 0.033796 ACATACTCCCTCCGTTCCGA 60.034 55.000 0.00 0.00 0.00 4.55
4364 7713 0.102481 CACATACTCCCTCCGTTCCG 59.898 60.000 0.00 0.00 0.00 4.30
4365 7714 0.464452 CCACATACTCCCTCCGTTCC 59.536 60.000 0.00 0.00 0.00 3.62
4366 7715 1.134788 CACCACATACTCCCTCCGTTC 60.135 57.143 0.00 0.00 0.00 3.95
4367 7716 0.902531 CACCACATACTCCCTCCGTT 59.097 55.000 0.00 0.00 0.00 4.44
4368 7717 1.614241 GCACCACATACTCCCTCCGT 61.614 60.000 0.00 0.00 0.00 4.69
4369 7718 1.144057 GCACCACATACTCCCTCCG 59.856 63.158 0.00 0.00 0.00 4.63
4370 7719 1.144057 CGCACCACATACTCCCTCC 59.856 63.158 0.00 0.00 0.00 4.30
4371 7720 0.535335 TTCGCACCACATACTCCCTC 59.465 55.000 0.00 0.00 0.00 4.30
4372 7721 0.981183 TTTCGCACCACATACTCCCT 59.019 50.000 0.00 0.00 0.00 4.20
4373 7722 1.670811 CATTTCGCACCACATACTCCC 59.329 52.381 0.00 0.00 0.00 4.30
4374 7723 1.064060 GCATTTCGCACCACATACTCC 59.936 52.381 0.00 0.00 41.79 3.85
4375 7724 2.009774 AGCATTTCGCACCACATACTC 58.990 47.619 0.00 0.00 46.13 2.59
4376 7725 2.113860 AGCATTTCGCACCACATACT 57.886 45.000 0.00 0.00 46.13 2.12
4377 7726 3.126171 TGTTAGCATTTCGCACCACATAC 59.874 43.478 0.00 0.00 46.13 2.39
4378 7727 3.339141 TGTTAGCATTTCGCACCACATA 58.661 40.909 0.00 0.00 46.13 2.29
4379 7728 2.158559 TGTTAGCATTTCGCACCACAT 58.841 42.857 0.00 0.00 46.13 3.21
4474 7984 7.437862 TCAAAGCAACTTGGAATGAATTTACAC 59.562 33.333 0.00 0.00 0.00 2.90
4486 7996 5.913137 TCTTTTTCTCAAAGCAACTTGGA 57.087 34.783 0.00 0.00 0.00 3.53
4507 8017 7.190920 AGCTTTAAACACAGACACTTGTATC 57.809 36.000 0.00 0.00 0.00 2.24
4520 8036 8.912658 GCAATAACTTTCCTAAGCTTTAAACAC 58.087 33.333 3.20 0.00 34.60 3.32
4539 8055 2.798834 TCGCGTTAAGCTGCAATAAC 57.201 45.000 5.77 14.60 45.59 1.89
4542 8058 1.265635 TGTTTCGCGTTAAGCTGCAAT 59.734 42.857 5.77 0.00 45.59 3.56
4555 8079 7.321271 CGATGGTTCATCTATTTTATGTTTCGC 59.679 37.037 6.37 0.00 38.59 4.70
4570 8513 4.793216 CGGAAATTTTGACGATGGTTCATC 59.207 41.667 0.00 0.00 37.50 2.92
4595 8538 9.297586 CACTGGTATCAATTTTGATCAAGATTG 57.702 33.333 31.49 31.49 44.17 2.67
4602 8545 5.953183 TGTGCACTGGTATCAATTTTGATC 58.047 37.500 19.41 2.59 44.17 2.92
4605 8548 5.472148 ACATGTGCACTGGTATCAATTTTG 58.528 37.500 19.41 0.00 0.00 2.44
4615 8558 0.329261 AGCCATACATGTGCACTGGT 59.671 50.000 19.41 17.53 0.00 4.00
4627 8570 2.293170 GGCAGGAAAGAGAAGCCATAC 58.707 52.381 0.00 0.00 44.59 2.39
4653 8597 2.002586 ACATGATCGAACTTTCAGCCG 58.997 47.619 0.00 0.00 0.00 5.52
4665 8609 4.526970 CTAACAAAGCAGGACATGATCG 57.473 45.455 0.00 0.00 0.00 3.69
4693 8649 7.730332 ACATGAAAGAGGAGAAAACCCTAAATT 59.270 33.333 0.00 0.00 33.36 1.82
4733 8691 2.643551 ACATGGGGAAATCGCTACTTG 58.356 47.619 0.00 0.00 0.00 3.16
4742 8700 2.705127 ACAGCAAACAACATGGGGAAAT 59.295 40.909 0.00 0.00 0.00 2.17
4750 8711 8.090214 AGCAGAATTTTATACAGCAAACAACAT 58.910 29.630 0.00 0.00 0.00 2.71
4751 8712 7.432869 AGCAGAATTTTATACAGCAAACAACA 58.567 30.769 0.00 0.00 0.00 3.33
4752 8713 7.873739 AGCAGAATTTTATACAGCAAACAAC 57.126 32.000 0.00 0.00 0.00 3.32
4753 8714 7.384660 CCAAGCAGAATTTTATACAGCAAACAA 59.615 33.333 0.00 0.00 0.00 2.83
4798 8761 4.502962 CACTGCAAAAAGAGTGGGAAAAA 58.497 39.130 0.00 0.00 36.69 1.94
4799 8762 3.678529 GCACTGCAAAAAGAGTGGGAAAA 60.679 43.478 0.00 0.00 40.06 2.29
4800 8763 2.159114 GCACTGCAAAAAGAGTGGGAAA 60.159 45.455 0.00 0.00 40.06 3.13
4802 8765 1.032014 GCACTGCAAAAAGAGTGGGA 58.968 50.000 0.00 0.00 40.06 4.37
4803 8766 0.318107 CGCACTGCAAAAAGAGTGGG 60.318 55.000 1.11 0.00 43.89 4.61
4804 8767 0.662619 TCGCACTGCAAAAAGAGTGG 59.337 50.000 1.11 0.00 40.06 4.00
4805 8768 2.578495 GATCGCACTGCAAAAAGAGTG 58.422 47.619 1.11 0.00 42.18 3.51
4808 8771 1.603456 TGGATCGCACTGCAAAAAGA 58.397 45.000 1.11 0.00 0.00 2.52
5219 9336 4.394729 ACTAAATCAGCAACCCGAGAAAA 58.605 39.130 0.00 0.00 0.00 2.29
5451 9570 4.227538 CACTGATTTGCAAGAAGCTGAAG 58.772 43.478 0.00 0.00 45.94 3.02
5527 9646 5.639506 CCTGTTACTAACATTCACTCTGGTG 59.360 44.000 2.02 0.00 41.26 4.17
5530 9649 5.794894 ACCCTGTTACTAACATTCACTCTG 58.205 41.667 2.02 0.00 41.26 3.35
5573 9692 5.868801 CCTACAATGCATTACCACCAAAAAG 59.131 40.000 12.53 0.00 0.00 2.27
5578 9697 3.616219 GTCCTACAATGCATTACCACCA 58.384 45.455 12.53 0.00 0.00 4.17
5580 9699 2.612212 CCGTCCTACAATGCATTACCAC 59.388 50.000 12.53 4.12 0.00 4.16
5740 9859 3.064820 CAGCTAACTTCAACCGTGTTTGT 59.935 43.478 0.00 0.00 0.00 2.83
5742 9861 3.275999 ACAGCTAACTTCAACCGTGTTT 58.724 40.909 0.00 0.00 0.00 2.83
5748 9867 3.708563 TGCAAACAGCTAACTTCAACC 57.291 42.857 0.00 0.00 45.94 3.77
5890 10010 5.542251 ACAGCCTTATGGTTTTGTTGGTATT 59.458 36.000 0.00 0.00 35.27 1.89
5891 10011 5.083821 ACAGCCTTATGGTTTTGTTGGTAT 58.916 37.500 0.00 0.00 35.27 2.73
5892 10012 4.475345 ACAGCCTTATGGTTTTGTTGGTA 58.525 39.130 0.00 0.00 35.27 3.25
5893 10013 3.304829 ACAGCCTTATGGTTTTGTTGGT 58.695 40.909 0.00 0.00 35.27 3.67
5894 10014 3.320541 TGACAGCCTTATGGTTTTGTTGG 59.679 43.478 0.00 0.00 35.27 3.77
5898 10018 4.946157 AGAGATGACAGCCTTATGGTTTTG 59.054 41.667 0.00 0.00 35.27 2.44
5903 10023 5.282055 TGTTAGAGATGACAGCCTTATGG 57.718 43.478 0.00 0.00 0.00 2.74
5911 10031 5.276726 CGCACAATGATGTTAGAGATGACAG 60.277 44.000 0.00 0.00 37.82 3.51
5922 10042 0.889994 ACATGGCGCACAATGATGTT 59.110 45.000 19.83 0.00 37.82 2.71
5923 10043 0.889994 AACATGGCGCACAATGATGT 59.110 45.000 19.83 9.58 41.61 3.06
5924 10044 1.921887 GAAACATGGCGCACAATGATG 59.078 47.619 19.83 9.05 0.00 3.07
5931 10051 1.987770 CAAAGATGAAACATGGCGCAC 59.012 47.619 10.83 0.00 0.00 5.34
5934 10054 4.353737 CATACCAAAGATGAAACATGGCG 58.646 43.478 0.00 0.00 34.45 5.69
5951 10071 5.874810 TCAGTACAGATCAACTTTGCATACC 59.125 40.000 0.00 0.00 0.00 2.73
5973 10093 3.603532 GTTCATCATGTGCTCCTCTTCA 58.396 45.455 0.00 0.00 0.00 3.02
5975 10095 2.625737 CGTTCATCATGTGCTCCTCTT 58.374 47.619 0.00 0.00 0.00 2.85
5984 10106 3.904800 TCATGGTACCGTTCATCATGT 57.095 42.857 3.06 0.00 37.20 3.21
6022 10144 1.214589 GCACCATCAAGGCAGCTTG 59.785 57.895 0.00 0.00 43.14 4.01
6023 10145 1.228644 TGCACCATCAAGGCAGCTT 60.229 52.632 0.00 0.00 43.14 3.74
6027 10149 2.212812 TTATGTGCACCATCAAGGCA 57.787 45.000 15.69 0.00 43.14 4.75
6035 10157 5.832801 TTGCATCATGGTTTATGTGCACCA 61.833 41.667 15.69 3.82 45.07 4.17
6036 10158 2.166050 TGCATCATGGTTTATGTGCACC 59.834 45.455 15.69 0.00 42.91 5.01
6045 10177 1.549620 TGCCGATTTGCATCATGGTTT 59.450 42.857 0.00 0.00 36.04 3.27
6049 10181 4.026062 CAGATTTTGCCGATTTGCATCATG 60.026 41.667 0.00 0.00 41.70 3.07
6075 10207 3.194755 TGCTTCTATAGTTTCCTGACGCA 59.805 43.478 0.00 0.00 31.28 5.24
6077 10209 5.460419 GTCATGCTTCTATAGTTTCCTGACG 59.540 44.000 0.00 0.00 0.00 4.35
6078 10210 6.578023 AGTCATGCTTCTATAGTTTCCTGAC 58.422 40.000 14.22 14.22 0.00 3.51
6079 10211 6.609212 AGAGTCATGCTTCTATAGTTTCCTGA 59.391 38.462 0.00 0.00 0.00 3.86
6080 10212 6.700960 CAGAGTCATGCTTCTATAGTTTCCTG 59.299 42.308 0.00 0.00 0.00 3.86
6081 10213 6.609212 TCAGAGTCATGCTTCTATAGTTTCCT 59.391 38.462 0.00 0.00 0.00 3.36
6082 10214 6.810911 TCAGAGTCATGCTTCTATAGTTTCC 58.189 40.000 0.00 0.00 0.00 3.13
6083 10215 8.709386 TTTCAGAGTCATGCTTCTATAGTTTC 57.291 34.615 0.00 0.00 0.00 2.78
6107 10239 8.188139 ACGGCATCTTATCGTTGAATAATTTTT 58.812 29.630 0.00 0.00 32.95 1.94
6130 10262 4.775058 TGATAAAATGTTCCCAACACGG 57.225 40.909 0.00 0.00 45.50 4.94
6139 10271 5.970023 GTGAGCTGCTCATGATAAAATGTTC 59.030 40.000 32.45 13.02 42.73 3.18
6156 10288 6.637483 GTCAAGAGTGAATGCTAGTGAGCTG 61.637 48.000 0.00 0.00 41.84 4.24
6181 10313 5.324697 CCTTTTCTCGTCGAATCCAAATTC 58.675 41.667 0.00 0.00 38.34 2.17
6182 10314 4.379499 GCCTTTTCTCGTCGAATCCAAATT 60.379 41.667 0.00 0.00 0.00 1.82
6183 10315 3.127030 GCCTTTTCTCGTCGAATCCAAAT 59.873 43.478 0.00 0.00 0.00 2.32
6184 10316 2.482721 GCCTTTTCTCGTCGAATCCAAA 59.517 45.455 0.00 0.00 0.00 3.28
6185 10317 2.073816 GCCTTTTCTCGTCGAATCCAA 58.926 47.619 0.00 0.00 0.00 3.53
6186 10318 1.001520 TGCCTTTTCTCGTCGAATCCA 59.998 47.619 0.00 0.00 0.00 3.41
6187 10319 1.722011 TGCCTTTTCTCGTCGAATCC 58.278 50.000 0.00 0.00 0.00 3.01
6188 10320 2.930040 TGATGCCTTTTCTCGTCGAATC 59.070 45.455 0.00 0.00 0.00 2.52
6189 10321 2.932614 CTGATGCCTTTTCTCGTCGAAT 59.067 45.455 0.00 0.00 0.00 3.34
6190 10322 2.337583 CTGATGCCTTTTCTCGTCGAA 58.662 47.619 0.00 0.00 0.00 3.71
6191 10323 1.996292 CTGATGCCTTTTCTCGTCGA 58.004 50.000 0.00 0.00 0.00 4.20
6192 10324 0.371645 GCTGATGCCTTTTCTCGTCG 59.628 55.000 0.00 0.00 0.00 5.12
6193 10325 1.396301 CAGCTGATGCCTTTTCTCGTC 59.604 52.381 8.42 0.00 40.80 4.20
6194 10326 1.271054 ACAGCTGATGCCTTTTCTCGT 60.271 47.619 23.35 0.00 40.80 4.18
6195 10327 1.446907 ACAGCTGATGCCTTTTCTCG 58.553 50.000 23.35 0.00 40.80 4.04
6196 10328 4.450053 AGATACAGCTGATGCCTTTTCTC 58.550 43.478 23.35 0.00 40.80 2.87
6197 10329 4.163839 AGAGATACAGCTGATGCCTTTTCT 59.836 41.667 23.35 6.57 40.80 2.52
6198 10330 4.450053 AGAGATACAGCTGATGCCTTTTC 58.550 43.478 23.35 1.24 40.80 2.29
6199 10331 4.500499 AGAGATACAGCTGATGCCTTTT 57.500 40.909 23.35 0.00 40.80 2.27
6200 10332 4.500499 AAGAGATACAGCTGATGCCTTT 57.500 40.909 23.35 5.11 40.80 3.11
6201 10333 4.500499 AAAGAGATACAGCTGATGCCTT 57.500 40.909 23.35 13.10 40.80 4.35
6202 10334 4.080695 TCAAAAGAGATACAGCTGATGCCT 60.081 41.667 23.35 11.33 40.80 4.75
6203 10335 4.034975 GTCAAAAGAGATACAGCTGATGCC 59.965 45.833 23.35 6.39 40.80 4.40
6204 10336 4.260132 CGTCAAAAGAGATACAGCTGATGC 60.260 45.833 23.35 8.53 40.05 3.91
6205 10337 5.105063 TCGTCAAAAGAGATACAGCTGATG 58.895 41.667 23.35 0.00 0.00 3.07
6206 10338 5.330455 TCGTCAAAAGAGATACAGCTGAT 57.670 39.130 23.35 9.62 0.00 2.90
6207 10339 4.783764 TCGTCAAAAGAGATACAGCTGA 57.216 40.909 23.35 4.31 0.00 4.26
6208 10340 6.414408 AATTCGTCAAAAGAGATACAGCTG 57.586 37.500 13.48 13.48 0.00 4.24
6209 10341 6.128172 CCAAATTCGTCAAAAGAGATACAGCT 60.128 38.462 0.00 0.00 0.00 4.24
6210 10342 6.024049 CCAAATTCGTCAAAAGAGATACAGC 58.976 40.000 0.00 0.00 0.00 4.40
6211 10343 7.364522 TCCAAATTCGTCAAAAGAGATACAG 57.635 36.000 0.00 0.00 0.00 2.74
6212 10344 7.921786 ATCCAAATTCGTCAAAAGAGATACA 57.078 32.000 0.00 0.00 0.00 2.29
6213 10345 8.828029 GAATCCAAATTCGTCAAAAGAGATAC 57.172 34.615 0.00 0.00 32.46 2.24
6233 10365 5.163814 CCTGATGTCTTTTCTTGTCGAATCC 60.164 44.000 0.00 0.00 0.00 3.01
6250 10382 7.454694 TGATATACCTGCTTATACACCTGATGT 59.545 37.037 0.00 0.00 46.06 3.06
6251 10383 7.840931 TGATATACCTGCTTATACACCTGATG 58.159 38.462 0.00 0.00 0.00 3.07
6252 10384 8.481314 CATGATATACCTGCTTATACACCTGAT 58.519 37.037 0.00 0.00 0.00 2.90
6253 10385 7.673926 TCATGATATACCTGCTTATACACCTGA 59.326 37.037 0.00 0.00 0.00 3.86
6254 10386 7.840931 TCATGATATACCTGCTTATACACCTG 58.159 38.462 0.00 0.00 0.00 4.00
6255 10387 8.435931 TTCATGATATACCTGCTTATACACCT 57.564 34.615 0.00 0.00 0.00 4.00
6256 10388 9.102757 CATTCATGATATACCTGCTTATACACC 57.897 37.037 0.00 0.00 0.00 4.16
6257 10389 8.607459 GCATTCATGATATACCTGCTTATACAC 58.393 37.037 0.00 0.00 0.00 2.90
6258 10390 8.320617 TGCATTCATGATATACCTGCTTATACA 58.679 33.333 0.00 0.00 0.00 2.29
6259 10391 8.722480 TGCATTCATGATATACCTGCTTATAC 57.278 34.615 0.00 0.00 0.00 1.47
6283 10415 6.139048 TGCATGATCAATGTTAACCTCATG 57.861 37.500 18.23 18.23 41.68 3.07
6284 10416 6.183360 CCTTGCATGATCAATGTTAACCTCAT 60.183 38.462 0.00 1.73 38.65 2.90
6287 10419 4.142093 GCCTTGCATGATCAATGTTAACCT 60.142 41.667 0.00 0.00 38.65 3.50
6327 10473 3.993081 ACAGAGCATTTCAACGAGAGAAG 59.007 43.478 0.00 0.00 0.00 2.85
6335 10481 8.507249 ACTACATTCTTAACAGAGCATTTCAAC 58.493 33.333 0.00 0.00 0.00 3.18
6535 10681 0.251341 GTCCATTTCACCTGGGCACT 60.251 55.000 0.00 0.00 38.31 4.40
6652 10798 3.046374 TCTTCCCCTTATTACTCTGGCC 58.954 50.000 0.00 0.00 0.00 5.36
6683 10829 3.460825 TCCTGGCTATAACAACTTCCCT 58.539 45.455 0.00 0.00 0.00 4.20


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.