AutoCloner

Multiple sequence alignment - TraesCS4B01G061600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS4B01G061600	chr4B	100.000	2588	0	0	1	2588	53045655	53043068	0.000000e+00	4780.0
1	TraesCS4B01G061600	chr4B	96.350	904	11	4	1692	2588	52929287	52930175	0.000000e+00	1467.0
2	TraesCS4B01G061600	chr4B	92.045	792	49	7	474	1257	52895006	52895791	0.000000e+00	1101.0
3	TraesCS4B01G061600	chr4B	91.459	761	43	10	941	1690	52398285	52399034	0.000000e+00	1026.0
4	TraesCS4B01G061600	chr4B	92.598	635	44	1	941	1572	52412652	52413286	0.000000e+00	909.0
5	TraesCS4B01G061600	chr4B	90.454	639	58	2	1052	1690	52828424	52829059	0.000000e+00	839.0
6	TraesCS4B01G061600	chr4B	90.252	595	42	8	1096	1690	52817853	52818431	0.000000e+00	763.0
7	TraesCS4B01G061600	chr4B	95.724	304	10	3	182	485	608070079	608069779	1.080000e-133	486.0
8	TraesCS4B01G061600	chr4B	94.585	277	15	0	1292	1568	52895790	52896066	1.840000e-116	429.0
9	TraesCS4B01G061600	chr4B	84.134	479	29	18	2105	2583	52399641	52400072	1.110000e-113	420.0
10	TraesCS4B01G061600	chr4B	93.048	187	10	3	1	185	658947356	658947171	1.180000e-68	270.0
11	TraesCS4B01G061600	chr4B	80.980	347	43	15	1692	2023	52399152	52399490	1.190000e-63	254.0
12	TraesCS4B01G061600	chr4B	95.238	126	6	0	1565	1690	52928026	52928151	1.570000e-47	200.0
13	TraesCS4B01G061600	chr4B	92.437	119	9	0	941	1059	52820039	52820157	1.230000e-38	171.0
14	TraesCS4B01G061600	chr4B	85.616	146	20	1	2420	2564	52939476	52939621	4.460000e-33	152.0
15	TraesCS4B01G061600	chr4B	85.616	146	20	1	2420	2564	53019814	53019669	4.460000e-33	152.0
16	TraesCS4B01G061600	chr4B	83.007	153	17	7	2420	2564	53015134	53014983	2.090000e-26	130.0
17	TraesCS4B01G061600	chr4A	94.000	750	42	1	941	1690	565842273	565841527	0.000000e+00	1133.0
18	TraesCS4B01G061600	chr4A	92.823	627	45	0	941	1567	566290797	566291423	0.000000e+00	909.0
19	TraesCS4B01G061600	chr4A	87.805	123	9	3	2139	2261	565840846	565840730	3.470000e-29	139.0
20	TraesCS4B01G061600	chr4A	82.895	152	19	6	2420	2564	565750579	565750428	2.090000e-26	130.0
21	TraesCS4B01G061600	chr4D	90.658	760	46	13	941	1686	36420404	36421152	0.000000e+00	987.0
22	TraesCS4B01G061600	chr4D	84.932	146	21	1	2420	2564	36446804	36446949	2.080000e-31	147.0
23	TraesCS4B01G061600	chr4D	84.247	146	22	1	2420	2564	36464505	36464650	9.660000e-30	141.0
24	TraesCS4B01G061600	chr4D	89.286	112	12	0	2453	2564	36561616	36561727	9.660000e-30	141.0
25	TraesCS4B01G061600	chr4D	82.550	149	22	4	2420	2564	36440729	36440877	7.520000e-26	128.0
26	TraesCS4B01G061600	chr7B	96.644	298	9	1	182	479	658228074	658228370	6.430000e-136	494.0
27	TraesCS4B01G061600	chr7B	93.011	186	12	1	1	185	74287360	74287545	1.180000e-68	270.0
28	TraesCS4B01G061600	chr7B	92.513	187	12	2	1	185	412133584	412133398	1.530000e-67	267.0
29	TraesCS4B01G061600	chr2B	96.939	294	7	2	182	475	781863310	781863601	2.310000e-135	492.0
30	TraesCS4B01G061600	chr2B	95.946	296	11	1	182	477	29382900	29383194	1.800000e-131	479.0
31	TraesCS4B01G061600	chr2B	95.082	305	12	3	182	485	17310053	17310355	6.480000e-131	477.0
32	TraesCS4B01G061600	chr2B	93.085	188	10	3	1	185	761216452	761216265	3.280000e-69	272.0
33	TraesCS4B01G061600	chr2B	92.973	185	11	2	3	185	735716971	735717155	4.240000e-68	268.0
34	TraesCS4B01G061600	chr6B	96.633	297	7	3	182	478	148310692	148310985	8.320000e-135	490.0
35	TraesCS4B01G061600	chr6B	92.513	187	12	2	1	185	148310280	148310466	1.530000e-67	267.0
36	TraesCS4B01G061600	chr5B	96.928	293	8	1	182	474	634039082	634038791	8.320000e-135	490.0
37	TraesCS4B01G061600	chr5B	96.599	294	9	1	182	475	8839862	8839570	1.080000e-133	486.0
38	TraesCS4B01G061600	chr3B	96.284	296	10	1	182	477	23561058	23560764	3.870000e-133	484.0
39	TraesCS4B01G061600	chrUn	93.085	188	10	2	1	185	59393968	59394155	3.280000e-69	272.0
40	TraesCS4B01G061600	chr1A	92.593	189	10	2	1	185	11987510	11987322	4.240000e-68	268.0
41	TraesCS4B01G061600	chr1B	92.513	187	12	2	1	185	489680519	489680705	1.530000e-67	267.0
42	TraesCS4B01G061600	chr6D	90.000	40	4	0	1789	1828	265992278	265992317	5.000000e-03	52.8

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS4B01G061600	chr4B	53043068	53045655	2587	True	4780.000000	4780	100.000000	1	2588	1	chr4B.!!$R3	2587
1	TraesCS4B01G061600	chr4B	52412652	52413286	634	False	909.000000	909	92.598000	941	1572	1	chr4B.!!$F1	631
2	TraesCS4B01G061600	chr4B	52828424	52829059	635	False	839.000000	839	90.454000	1052	1690	1	chr4B.!!$F2	638
3	TraesCS4B01G061600	chr4B	52928026	52930175	2149	False	833.500000	1467	95.794000	1565	2588	2	chr4B.!!$F7	1023
4	TraesCS4B01G061600	chr4B	52895006	52896066	1060	False	765.000000	1101	93.315000	474	1568	2	chr4B.!!$F6	1094
5	TraesCS4B01G061600	chr4B	52398285	52400072	1787	False	566.666667	1026	85.524333	941	2583	3	chr4B.!!$F4	1642
6	TraesCS4B01G061600	chr4B	52817853	52820157	2304	False	467.000000	763	91.344500	941	1690	2	chr4B.!!$F5	749
7	TraesCS4B01G061600	chr4A	566290797	566291423	626	False	909.000000	909	92.823000	941	1567	1	chr4A.!!$F1	626
8	TraesCS4B01G061600	chr4A	565840730	565842273	1543	True	636.000000	1133	90.902500	941	2261	2	chr4A.!!$R2	1320
9	TraesCS4B01G061600	chr4D	36420404	36421152	748	False	987.000000	987	90.658000	941	1686	1	chr4D.!!$F1	745
10	TraesCS4B01G061600	chr6B	148310280	148310985	705	False	378.500000	490	94.573000	1	478	2	chr6B.!!$F1	477

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
930	1165	0.036388	ATGGACGAACACGCCAAGAT	60.036	50.0	0.0	0.0	37.03	2.4	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
2108	3656	6.260936	ACAAGTAGAGATGAAAAACCAGTGTG	59.739	38.462	0.0	0.0	0.0	3.82	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
21	22	0.608035	AGCGAAATTTTGAGCCGGGA	60.608	50.000	9.75	0.00	0.00	5.14
35	37	1.935933	CCGGGATGGTTAAGTCGAAG	58.064	55.000	0.00	0.00	0.00	3.79
46	48	4.380233	GGTTAAGTCGAAGTAGCAGTAGCA	60.380	45.833	0.00	0.00	45.49	3.49
50	52	2.420722	GTCGAAGTAGCAGTAGCACTCT	59.579	50.000	0.00	0.00	45.49	3.24
60	63	3.368236	GCAGTAGCACTCTTAGGAAAACG	59.632	47.826	0.00	0.00	41.58	3.60
61	64	4.557205	CAGTAGCACTCTTAGGAAAACGT	58.443	43.478	0.00	0.00	0.00	3.99
113	116	4.727235	AGTGAAAAACGCTACTGCTAAC	57.273	40.909	0.00	0.00	37.60	2.34
115	118	3.182972	GTGAAAAACGCTACTGCTAACGA	59.817	43.478	0.00	0.00	36.97	3.85
215	446	2.233922	AGTTGCGGTGATACTTAGCAGT	59.766	45.455	0.00	0.00	39.11	4.40
217	448	3.710326	TGCGGTGATACTTAGCAGTAG	57.290	47.619	0.00	0.00	38.96	2.57
258	489	5.100259	CGCTGCTACTAAGTACTTTAGCAA	58.900	41.667	28.92	18.81	44.75	3.91
454	685	4.125703	GCTGCTGCTAAGATTCTGTGTAT	58.874	43.478	8.53	0.00	36.03	2.29
486	717	3.385111	CCTAGTAGTGAGATGGTTCCACC	59.615	52.174	0.00	0.00	39.22	4.61
489	720	1.573108	AGTGAGATGGTTCCACCGAT	58.427	50.000	0.00	0.00	42.58	4.18
514	745	2.819595	CCGAGGATGCACGGGTTG	60.820	66.667	15.15	0.00	44.59	3.77
515	746	2.819595	CGAGGATGCACGGGTTGG	60.820	66.667	0.00	0.00	0.00	3.77
516	747	2.438434	GAGGATGCACGGGTTGGG	60.438	66.667	0.00	0.00	0.00	4.12
518	749	4.041762	GGATGCACGGGTTGGGGA	62.042	66.667	0.00	0.00	0.00	4.81
519	750	2.034999	GATGCACGGGTTGGGGAA	59.965	61.111	0.00	0.00	0.00	3.97
528	759	1.486145	GGGTTGGGGAAGGAAGACGA	61.486	60.000	0.00	0.00	0.00	4.20
548	779	1.731969	AAGCACGTACGGCGAAGAC	60.732	57.895	21.06	7.63	44.77	3.01
572	803	1.446272	CGCGAGGTTTGGTCTCCTC	60.446	63.158	0.00	0.00	44.65	3.71
579	810	0.395312	GTTTGGTCTCCTCGTTGGGA	59.605	55.000	0.00	0.00	36.20	4.37
580	811	1.003233	GTTTGGTCTCCTCGTTGGGAT	59.997	52.381	0.00	0.00	34.56	3.85
660	891	1.202348	GGGAAGCACCGAAATTTGGAG	59.798	52.381	6.21	0.00	40.11	3.86
667	898	1.137404	CGAAATTTGGAGCGGCCTG	59.863	57.895	0.00	0.00	37.63	4.85
693	924	4.083696	GGTCGGAATAATCTCTCGTCTCTC	60.084	50.000	0.00	0.00	0.00	3.20
763	998	4.557496	CGATGAGACAGACAGACAAACAGA	60.557	45.833	0.00	0.00	0.00	3.41
772	1007	2.297315	ACAGACAAACAGAGCTCATCGA	59.703	45.455	17.77	0.00	0.00	3.59
792	1027	3.161450	GCGGATGGGAGGCACCTA	61.161	66.667	0.00	0.00	38.98	3.08
798	1033	0.105246	ATGGGAGGCACCTAGAGGAG	60.105	60.000	1.60	0.00	38.94	3.69
821	1056	0.930726	GAGGAGGAGGAGGAGAGGAA	59.069	60.000	0.00	0.00	0.00	3.36
918	1153	1.275291	GTTGGGTTGAGAGATGGACGA	59.725	52.381	0.00	0.00	0.00	4.20
922	1157	2.338500	GGTTGAGAGATGGACGAACAC	58.662	52.381	0.00	0.00	0.00	3.32
930	1165	0.036388	ATGGACGAACACGCCAAGAT	60.036	50.000	0.00	0.00	37.03	2.40
1324	1561	2.203640	ACACGGTGGAGAGCCTCA	60.204	61.111	13.48	0.00	34.31	3.86
1401	1638	3.468063	GGGACGGTGAACCTCACT	58.532	61.111	6.74	0.00	46.19	3.41
1563	1800	1.005394	CCTAAACGCCACGACCACT	60.005	57.895	0.00	0.00	0.00	4.00
1634	1889	3.352611	TTCCTTGGGAAAATGGGGAAA	57.647	42.857	0.00	0.00	38.93	3.13
1635	1890	3.352611	TCCTTGGGAAAATGGGGAAAA	57.647	42.857	0.00	0.00	0.00	2.29
1636	1891	3.880608	TCCTTGGGAAAATGGGGAAAAT	58.119	40.909	0.00	0.00	0.00	1.82
1637	1892	3.586618	TCCTTGGGAAAATGGGGAAAATG	59.413	43.478	0.00	0.00	0.00	2.32
1638	1893	3.346315	CTTGGGAAAATGGGGAAAATGC	58.654	45.455	0.00	0.00	0.00	3.56
1639	1894	2.630232	TGGGAAAATGGGGAAAATGCT	58.370	42.857	0.00	0.00	0.00	3.79
1640	1895	2.305343	TGGGAAAATGGGGAAAATGCTG	59.695	45.455	0.00	0.00	0.00	4.41
1641	1896	2.358957	GGAAAATGGGGAAAATGCTGC	58.641	47.619	0.00	0.00	0.00	5.25
1642	1897	2.026915	GGAAAATGGGGAAAATGCTGCT	60.027	45.455	0.00	0.00	0.00	4.24
1643	1898	3.559811	GGAAAATGGGGAAAATGCTGCTT	60.560	43.478	0.00	0.00	0.00	3.91
1690	1948	4.222336	CCAGATGGGAGTAGAGATCAACT	58.778	47.826	0.00	0.00	40.01	3.16
1693	3097	5.128499	CAGATGGGAGTAGAGATCAACTTGT	59.872	44.000	0.00	0.00	0.00	3.16
1918	3334	9.524106	AAAAAGGTGTTTAAGGAGTTAAATTCG	57.476	29.630	0.00	0.00	39.69	3.34
1952	3368	5.576128	CCCCAAAAATAGTTACTCCCTTCA	58.424	41.667	0.00	0.00	0.00	3.02
2083	3535	5.215160	GCTGTACTTGGACAAAATCTTGTG	58.785	41.667	0.00	0.00	45.98	3.33

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
21	22	4.803098	ACTGCTACTTCGACTTAACCAT	57.197	40.909	0.00	0.00	0.00	3.55
35	37	4.985538	TTCCTAAGAGTGCTACTGCTAC	57.014	45.455	0.00	0.00	40.48	3.58
46	48	5.127356	AGCTATAGCACGTTTTCCTAAGAGT	59.873	40.000	26.07	0.00	45.16	3.24
50	52	6.870769	AGTTAGCTATAGCACGTTTTCCTAA	58.129	36.000	26.07	9.85	45.16	2.69
115	118	9.489084	GGGATAAACAAAAGAAATAACTGCTTT	57.511	29.630	0.00	0.00	33.59	3.51
185	188	7.916914	AAGTATCACCGCAACTAATTAAAGT	57.083	32.000	0.00	0.00	0.00	2.66
187	190	7.549842	TGCTAAGTATCACCGCAACTAATTAAA	59.450	33.333	0.00	0.00	0.00	1.52
258	489	1.144057	CTTCCAAGGGACGCGCTAT	59.856	57.895	5.73	0.00	0.00	2.97
416	647	3.793776	GCAGCATGGTTTAAAAACAGC	57.206	42.857	7.80	7.50	40.63	4.40
507	738	1.462627	TCTTCCTTCCCCAACCCGT	60.463	57.895	0.00	0.00	0.00	5.28
508	739	1.002502	GTCTTCCTTCCCCAACCCG	60.003	63.158	0.00	0.00	0.00	5.28
509	740	1.002502	CGTCTTCCTTCCCCAACCC	60.003	63.158	0.00	0.00	0.00	4.11
510	741	0.321387	GTCGTCTTCCTTCCCCAACC	60.321	60.000	0.00	0.00	0.00	3.77
512	743	1.071699	CTTGTCGTCTTCCTTCCCCAA	59.928	52.381	0.00	0.00	0.00	4.12
513	744	0.685097	CTTGTCGTCTTCCTTCCCCA	59.315	55.000	0.00	0.00	0.00	4.96
514	745	0.673956	GCTTGTCGTCTTCCTTCCCC	60.674	60.000	0.00	0.00	0.00	4.81
515	746	0.034896	TGCTTGTCGTCTTCCTTCCC	59.965	55.000	0.00	0.00	0.00	3.97
516	747	1.149148	GTGCTTGTCGTCTTCCTTCC	58.851	55.000	0.00	0.00	0.00	3.46
518	749	0.104304	ACGTGCTTGTCGTCTTCCTT	59.896	50.000	0.00	0.00	36.85	3.36
519	750	0.956633	TACGTGCTTGTCGTCTTCCT	59.043	50.000	0.00	0.00	41.72	3.36
528	759	2.019951	CTTCGCCGTACGTGCTTGT	61.020	57.895	21.03	0.00	44.19	3.16
554	785	1.446272	GAGGAGACCAAACCTCGCG	60.446	63.158	0.00	0.00	42.25	5.87
579	810	1.153168	CAAATCTCCGTCCCGCCAT	60.153	57.895	0.00	0.00	0.00	4.40
580	811	2.267642	CAAATCTCCGTCCCGCCA	59.732	61.111	0.00	0.00	0.00	5.69
638	869	1.336795	CCAAATTTCGGTGCTTCCCAC	60.337	52.381	0.00	0.00	43.90	4.61
650	881	1.153765	GCAGGCCGCTCCAAATTTC	60.154	57.895	11.61	0.00	37.77	2.17
667	898	1.666311	CGAGAGATTATTCCGACCGGC	60.666	57.143	0.00	0.00	34.68	6.13
672	903	3.741856	CGAGAGACGAGAGATTATTCCGA	59.258	47.826	0.00	0.00	45.77	4.55
728	959	0.452184	TCTCATCGACGTGCTCCTTC	59.548	55.000	0.00	0.00	0.00	3.46
758	989	1.354040	CGCTTTCGATGAGCTCTGTT	58.646	50.000	16.19	0.00	37.99	3.16
763	998	0.531532	CCATCCGCTTTCGATGAGCT	60.532	55.000	16.32	0.00	37.99	4.09
772	1007	2.044946	GTGCCTCCCATCCGCTTT	60.045	61.111	0.00	0.00	0.00	3.51
792	1027	0.998945	CCTCCTCCTCCTCCTCCTCT	60.999	65.000	0.00	0.00	0.00	3.69
798	1033	0.996762	TCTCCTCCTCCTCCTCCTCC	60.997	65.000	0.00	0.00	0.00	4.30
799	1034	0.478507	CTCTCCTCCTCCTCCTCCTC	59.521	65.000	0.00	0.00	0.00	3.71
800	1035	0.998945	CCTCTCCTCCTCCTCCTCCT	60.999	65.000	0.00	0.00	0.00	3.69
801	1036	0.996762	TCCTCTCCTCCTCCTCCTCC	60.997	65.000	0.00	0.00	0.00	4.30
821	1056	3.614870	GCGATTTGACCCAAAGCATCTTT	60.615	43.478	8.15	0.00	39.34	2.52
891	1126	0.895559	CTCTCAACCCAACCCAAGCC	60.896	60.000	0.00	0.00	0.00	4.35
892	1127	0.110486	TCTCTCAACCCAACCCAAGC	59.890	55.000	0.00	0.00	0.00	4.01
918	1153	0.670546	CGTCTCCATCTTGGCGTGTT	60.671	55.000	0.00	0.00	37.47	3.32
922	1157	1.227089	CTCCGTCTCCATCTTGGCG	60.227	63.158	0.00	0.00	37.47	5.69
1029	1264	1.080093	GTCGACGAAGGGCACATCA	60.080	57.895	0.00	0.00	0.00	3.07
1305	1542	2.203640	AGGCTCTCCACCGTGTCA	60.204	61.111	0.00	0.00	33.74	3.58
1324	1561	3.081409	CCCCTCGTCCCCGAACAT	61.081	66.667	0.00	0.00	43.69	2.71
1350	1587	3.256960	ACCACATTGACGGGCCCT	61.257	61.111	22.43	6.87	0.00	5.19
1399	1636	0.105453	ATCGGTCCCATGAGGCTAGT	60.105	55.000	0.00	0.00	34.51	2.57
1401	1638	0.105709	TGATCGGTCCCATGAGGCTA	60.106	55.000	0.00	0.00	34.51	3.93
1630	1885	4.752146	AGCAAATCTAAGCAGCATTTTCC	58.248	39.130	0.00	0.00	0.00	3.13
1632	1887	5.126707	AGCTAGCAAATCTAAGCAGCATTTT	59.873	36.000	18.83	0.00	37.36	1.82
1633	1888	4.643784	AGCTAGCAAATCTAAGCAGCATTT	59.356	37.500	18.83	0.00	37.36	2.32
1634	1889	4.205587	AGCTAGCAAATCTAAGCAGCATT	58.794	39.130	18.83	0.00	37.36	3.56
1635	1890	3.818180	AGCTAGCAAATCTAAGCAGCAT	58.182	40.909	18.83	0.00	37.36	3.79
1636	1891	3.272574	AGCTAGCAAATCTAAGCAGCA	57.727	42.857	18.83	0.00	37.36	4.41
1637	1892	4.210955	CACTAGCTAGCAAATCTAAGCAGC	59.789	45.833	20.91	0.00	36.12	5.25
1638	1893	4.749099	CCACTAGCTAGCAAATCTAAGCAG	59.251	45.833	20.91	0.00	0.00	4.24
1639	1894	4.697514	CCACTAGCTAGCAAATCTAAGCA	58.302	43.478	20.91	0.00	0.00	3.91
1640	1895	3.496507	GCCACTAGCTAGCAAATCTAAGC	59.503	47.826	20.91	5.40	38.99	3.09
1641	1896	4.509600	GTGCCACTAGCTAGCAAATCTAAG	59.490	45.833	20.91	4.87	44.23	2.18
1642	1897	4.162320	AGTGCCACTAGCTAGCAAATCTAA	59.838	41.667	20.91	0.00	44.23	2.10
1643	1898	3.706594	AGTGCCACTAGCTAGCAAATCTA	59.293	43.478	20.91	0.00	44.23	1.98
1690	1948	6.037500	GCTTCATACAAGATGACTGCATACAA	59.962	38.462	0.00	0.00	34.11	2.41
1693	3097	5.673514	TGCTTCATACAAGATGACTGCATA	58.326	37.500	9.13	0.00	34.87	3.14
1918	3334	6.775594	ACTATTTTTGGGGCATCTCTAAAC	57.224	37.500	0.00	0.00	0.00	2.01
2000	3446	8.239038	CAGAGTACTCCATCTGTCCTAAAATA	57.761	38.462	19.38	0.00	38.49	1.40
2108	3656	6.260936	ACAAGTAGAGATGAAAAACCAGTGTG	59.739	38.462	0.00	0.00	0.00	3.82

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.