Multiple sequence alignment - TraesCS4B01G061000

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G061000 chr4B 100.000 6127 0 0 1 6127 52928958 52935084 0.000000e+00 11315.0
1 TraesCS4B01G061000 chr4B 94.390 2941 134 22 2915 5834 53041185 53038255 0.000000e+00 4488.0
2 TraesCS4B01G061000 chr4B 97.710 2576 25 8 333 2881 53043961 53041393 0.000000e+00 4399.0
3 TraesCS4B01G061000 chr4B 88.997 3399 294 52 2746 6117 52401020 52404365 0.000000e+00 4132.0
4 TraesCS4B01G061000 chr4B 84.973 1118 69 42 738 1827 52399641 52400687 0.000000e+00 1042.0
5 TraesCS4B01G061000 chr4B 94.682 677 21 6 2130 2794 52817188 52817861 0.000000e+00 1037.0
6 TraesCS4B01G061000 chr4B 82.936 545 73 14 2741 3272 52818492 52819029 2.000000e-129 473.0
7 TraesCS4B01G061000 chr4B 82.727 550 74 11 2741 3272 52829120 52829666 2.590000e-128 470.0
8 TraesCS4B01G061000 chr4B 89.766 342 28 4 1216 1552 52406246 52406585 1.220000e-116 431.0
9 TraesCS4B01G061000 chr4B 85.637 369 44 5 2912 3272 52830160 52830527 4.480000e-101 379.0
10 TraesCS4B01G061000 chr4B 79.879 497 91 6 5499 5991 500108676 500109167 7.550000e-94 355.0
11 TraesCS4B01G061000 chr4B 91.165 249 18 4 5882 6127 53037924 53037677 9.840000e-88 335.0
12 TraesCS4B01G061000 chr4B 95.312 192 9 0 13 204 377799007 377798816 7.720000e-79 305.0
13 TraesCS4B01G061000 chr4B 89.423 208 20 1 1621 1826 52816784 52816991 1.690000e-65 261.0
14 TraesCS4B01G061000 chr4B 90.503 179 14 2 1875 2050 52400710 52400888 3.690000e-57 233.0
15 TraesCS4B01G061000 chr4B 79.775 356 38 22 1051 1389 53015133 53014795 1.720000e-55 228.0
16 TraesCS4B01G061000 chr4B 89.831 177 15 2 1877 2050 52817017 52817193 2.220000e-54 224.0
17 TraesCS4B01G061000 chr4B 85.326 184 23 2 1243 1422 52939705 52939888 2.920000e-43 187.0
18 TraesCS4B01G061000 chr4B 85.326 184 23 2 1243 1422 53019585 53019402 2.920000e-43 187.0
19 TraesCS4B01G061000 chr4B 86.765 136 18 0 1059 1194 52939486 52939621 1.060000e-32 152.0
20 TraesCS4B01G061000 chr4B 87.692 130 16 0 1065 1194 53019798 53019669 1.060000e-32 152.0
21 TraesCS4B01G061000 chr4D 91.610 2646 165 32 2264 4874 36429877 36432500 0.000000e+00 3603.0
22 TraesCS4B01G061000 chr4D 90.175 916 60 8 4864 5778 36434028 36434914 0.000000e+00 1166.0
23 TraesCS4B01G061000 chr4D 81.867 557 88 11 5451 6003 500550569 500550022 2.010000e-124 457.0
24 TraesCS4B01G061000 chr4D 83.738 412 38 14 1642 2050 36429330 36429715 4.510000e-96 363.0
25 TraesCS4B01G061000 chr4D 78.092 566 110 12 5442 6004 491712837 491713391 4.550000e-91 346.0
26 TraesCS4B01G061000 chr4D 77.915 566 109 12 5445 6007 490670947 490671499 7.610000e-89 339.0
27 TraesCS4B01G061000 chr4D 82.222 315 32 14 1083 1389 36561616 36561914 3.670000e-62 250.0
28 TraesCS4B01G061000 chr4D 79.003 381 52 19 1051 1418 36464506 36464871 1.030000e-57 235.0
29 TraesCS4B01G061000 chr4D 97.744 133 3 0 2130 2262 36429710 36429842 4.780000e-56 230.0
30 TraesCS4B01G061000 chr4D 84.828 145 21 1 1051 1194 36446805 36446949 1.780000e-30 145.0
31 TraesCS4B01G061000 chr4D 100.000 29 0 0 5337 5365 302395909 302395937 3.000000e-03 54.7
32 TraesCS4B01G061000 chr4A 87.414 1891 198 27 3431 5287 565838193 565836309 0.000000e+00 2137.0
33 TraesCS4B01G061000 chr4A 82.584 1223 149 35 2261 3442 565839409 565838210 0.000000e+00 1020.0
34 TraesCS4B01G061000 chr4A 83.733 1168 87 48 736 1854 565840892 565839779 0.000000e+00 1009.0
35 TraesCS4B01G061000 chr4A 94.924 197 10 0 1 197 704757467 704757271 5.960000e-80 309.0
36 TraesCS4B01G061000 chr4A 93.204 206 12 1 1 204 163799377 163799582 9.980000e-78 302.0
37 TraesCS4B01G061000 chr4A 73.533 733 155 26 3142 3861 565749230 565748524 6.140000e-60 243.0
38 TraesCS4B01G061000 chr4A 89.674 184 15 2 1874 2053 565839791 565839608 1.330000e-56 231.0
39 TraesCS4B01G061000 chr4A 85.946 185 22 2 1247 1427 565750337 565750153 1.740000e-45 195.0
40 TraesCS4B01G061000 chr4A 84.483 174 27 0 1258 1431 565761791 565761618 8.160000e-39 172.0
41 TraesCS4B01G061000 chr4A 95.918 98 2 2 2042 2138 691017923 691017827 2.290000e-34 158.0
42 TraesCS4B01G061000 chr4A 93.137 102 6 1 2038 2139 681667426 681667326 1.380000e-31 148.0
43 TraesCS4B01G061000 chr4A 74.785 349 61 22 4897 5231 565747971 565747636 1.390000e-26 132.0
44 TraesCS4B01G061000 chr4A 83.803 142 17 5 1059 1194 565750569 565750428 4.980000e-26 130.0
45 TraesCS4B01G061000 chr5D 80.565 566 101 8 5441 6003 545166094 545166653 1.580000e-115 427.0
46 TraesCS4B01G061000 chr3B 78.300 553 104 15 5446 5992 61526303 61525761 5.880000e-90 342.0
47 TraesCS4B01G061000 chr3B 91.509 106 5 3 2043 2147 415928088 415928190 6.400000e-30 143.0
48 TraesCS4B01G061000 chr6A 80.087 462 82 10 5546 6003 56068825 56069280 9.840000e-88 335.0
49 TraesCS4B01G061000 chr6A 95.699 93 4 0 2039 2131 473616624 473616532 3.830000e-32 150.0
50 TraesCS4B01G061000 chr1B 96.447 197 7 0 1 197 634500274 634500078 5.920000e-85 326.0
51 TraesCS4B01G061000 chr1B 95.477 199 9 0 1 199 626720081 626720279 9.910000e-83 318.0
52 TraesCS4B01G061000 chr1B 94.388 196 10 1 13 207 57502756 57502561 3.590000e-77 300.0
53 TraesCS4B01G061000 chr1B 95.918 98 4 0 2039 2136 431457286 431457189 6.360000e-35 159.0
54 TraesCS4B01G061000 chr2B 96.429 196 7 0 1 196 223085329 223085134 2.130000e-84 324.0
55 TraesCS4B01G061000 chr2D 94.949 198 10 0 1 198 520039959 520040156 1.660000e-80 311.0
56 TraesCS4B01G061000 chr2D 93.878 98 6 0 2035 2132 465573050 465572953 1.380000e-31 148.0
57 TraesCS4B01G061000 chr3A 77.174 552 110 12 5446 5991 78184293 78183752 2.150000e-79 307.0
58 TraesCS4B01G061000 chr7B 73.655 892 190 31 2995 3861 19889327 19890198 2.780000e-78 303.0
59 TraesCS4B01G061000 chr7B 71.169 770 175 36 3122 3861 19527256 19528008 1.380000e-31 148.0
60 TraesCS4B01G061000 chr7B 84.874 119 18 0 3743 3861 19673830 19673948 3.000000e-23 121.0
61 TraesCS4B01G061000 chr7A 95.312 192 8 1 13 204 110477529 110477339 2.780000e-78 303.0
62 TraesCS4B01G061000 chrUn 95.745 94 4 0 2043 2136 12907676 12907583 1.060000e-32 152.0
63 TraesCS4B01G061000 chr6B 93.204 103 6 1 2046 2148 238140989 238140888 3.830000e-32 150.0
64 TraesCS4B01G061000 chr7D 84.298 121 17 1 3743 3861 75018603 75018723 3.880000e-22 117.0
65 TraesCS4B01G061000 chr3D 80.952 105 17 3 5335 5438 576310972 576311074 5.090000e-11 80.5
66 TraesCS4B01G061000 chr6D 94.000 50 1 2 5337 5385 265305215 265305263 2.370000e-09 75.0
67 TraesCS4B01G061000 chr6D 91.489 47 4 0 5339 5385 119991868 119991914 1.430000e-06 65.8
68 TraesCS4B01G061000 chr1D 90.000 50 3 2 5337 5385 384466262 384466214 5.130000e-06 63.9
69 TraesCS4B01G061000 chr1A 100.000 31 0 0 5337 5367 484293344 484293314 2.390000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G061000 chr4B 52928958 52935084 6126 False 11315.00 11315 100.000000 1 6127 1 chr4B.!!$F1 6126
1 TraesCS4B01G061000 chr4B 53037677 53043961 6284 True 3074.00 4488 94.421667 333 6127 3 chr4B.!!$R4 5794
2 TraesCS4B01G061000 chr4B 52399641 52406585 6944 False 1459.50 4132 88.559750 738 6117 4 chr4B.!!$F3 5379
3 TraesCS4B01G061000 chr4B 52816784 52819029 2245 False 498.75 1037 89.218000 1621 3272 4 chr4B.!!$F4 1651
4 TraesCS4B01G061000 chr4B 52829120 52830527 1407 False 424.50 470 84.182000 2741 3272 2 chr4B.!!$F5 531
5 TraesCS4B01G061000 chr4D 36429330 36434914 5584 False 1340.50 3603 90.816750 1642 5778 4 chr4D.!!$F7 4136
6 TraesCS4B01G061000 chr4D 500550022 500550569 547 True 457.00 457 81.867000 5451 6003 1 chr4D.!!$R1 552
7 TraesCS4B01G061000 chr4D 491712837 491713391 554 False 346.00 346 78.092000 5442 6004 1 chr4D.!!$F6 562
8 TraesCS4B01G061000 chr4D 490670947 490671499 552 False 339.00 339 77.915000 5445 6007 1 chr4D.!!$F5 562
9 TraesCS4B01G061000 chr4A 565836309 565840892 4583 True 1099.25 2137 85.851250 736 5287 4 chr4A.!!$R6 4551
10 TraesCS4B01G061000 chr5D 545166094 545166653 559 False 427.00 427 80.565000 5441 6003 1 chr5D.!!$F1 562
11 TraesCS4B01G061000 chr3B 61525761 61526303 542 True 342.00 342 78.300000 5446 5992 1 chr3B.!!$R1 546
12 TraesCS4B01G061000 chr3A 78183752 78184293 541 True 307.00 307 77.174000 5446 5991 1 chr3A.!!$R1 545
13 TraesCS4B01G061000 chr7B 19889327 19890198 871 False 303.00 303 73.655000 2995 3861 1 chr7B.!!$F3 866

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
125 126 0.101759 ACATGCCAAGATTCATGCGC 59.898 50.000 0.0 0.0 42.72 6.09 F
318 319 0.109412 CTTCCGTCCACGTCCACTAC 60.109 60.000 0.0 0.0 37.74 2.73 F
321 322 0.179145 CCGTCCACGTCCACTACATC 60.179 60.000 0.0 0.0 37.74 3.06 F
322 323 0.524414 CGTCCACGTCCACTACATCA 59.476 55.000 0.0 0.0 34.11 3.07 F
323 324 1.134367 CGTCCACGTCCACTACATCAT 59.866 52.381 0.0 0.0 34.11 2.45 F
2863 3758 0.462047 GTCTTGTCCGCCACATAGGG 60.462 60.000 0.0 0.0 38.09 3.53 F
2903 3802 0.974383 AGGGGGTTACAGTCAGAACG 59.026 55.000 0.0 0.0 0.00 3.95 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1351 1408 1.680522 CGGTGAGCCATAGGAGCAGT 61.681 60.000 0.00 0.0 34.09 4.40 R
1894 1986 1.869342 GCGGCCAATAATCAATGCACC 60.869 52.381 2.24 0.0 0.00 5.01 R
2058 2154 7.942341 AGTACAAAGTTGGGTCATCTATTTTGA 59.058 33.333 0.00 0.0 0.00 2.69 R
2361 2527 6.644347 AGGAAAGATATTGTGACGATCAAGT 58.356 36.000 0.00 0.0 0.00 3.16 R
2869 3764 1.074248 CCCTGGCAGGTTTTACCGT 59.926 57.895 30.68 0.0 44.90 4.83 R
4146 6162 0.251634 TATGTCGCAGCCATCCAACA 59.748 50.000 0.00 0.0 0.00 3.33 R
5369 8949 0.599060 TGTTGTCTGGACGTATGCGA 59.401 50.000 11.07 0.0 42.00 5.10 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 2.125552 CGAACTGCATCTCGCCCA 60.126 61.111 4.83 0.00 41.33 5.36
18 19 2.456119 CGAACTGCATCTCGCCCAC 61.456 63.158 4.83 0.00 41.33 4.61
19 20 1.375908 GAACTGCATCTCGCCCACA 60.376 57.895 0.00 0.00 41.33 4.17
20 21 1.639298 GAACTGCATCTCGCCCACAC 61.639 60.000 0.00 0.00 41.33 3.82
21 22 2.046988 CTGCATCTCGCCCACACA 60.047 61.111 0.00 0.00 41.33 3.72
22 23 2.358615 TGCATCTCGCCCACACAC 60.359 61.111 0.00 0.00 41.33 3.82
23 24 3.127533 GCATCTCGCCCACACACC 61.128 66.667 0.00 0.00 32.94 4.16
24 25 2.347114 CATCTCGCCCACACACCA 59.653 61.111 0.00 0.00 0.00 4.17
25 26 1.742880 CATCTCGCCCACACACCAG 60.743 63.158 0.00 0.00 0.00 4.00
26 27 3.612247 ATCTCGCCCACACACCAGC 62.612 63.158 0.00 0.00 0.00 4.85
31 32 4.351054 CCCACACACCAGCCCCTC 62.351 72.222 0.00 0.00 0.00 4.30
32 33 4.351054 CCACACACCAGCCCCTCC 62.351 72.222 0.00 0.00 0.00 4.30
33 34 4.351054 CACACACCAGCCCCTCCC 62.351 72.222 0.00 0.00 0.00 4.30
43 44 3.246112 CCCCTCCCGTGTGGTGAA 61.246 66.667 0.00 0.00 34.77 3.18
44 45 2.824880 CCCCTCCCGTGTGGTGAAA 61.825 63.158 0.00 0.00 34.77 2.69
45 46 1.599797 CCCTCCCGTGTGGTGAAAC 60.600 63.158 0.00 0.00 34.77 2.78
46 47 1.959226 CCTCCCGTGTGGTGAAACG 60.959 63.158 0.00 0.00 38.12 3.60
50 51 4.007940 CGTGTGGTGAAACGGCCG 62.008 66.667 26.86 26.86 38.12 6.13
51 52 2.898343 GTGTGGTGAAACGGCCGT 60.898 61.111 28.70 28.70 38.12 5.68
52 53 2.897846 TGTGGTGAAACGGCCGTG 60.898 61.111 34.95 3.06 38.12 4.94
53 54 2.898343 GTGGTGAAACGGCCGTGT 60.898 61.111 34.95 29.73 38.12 4.49
54 55 2.897846 TGGTGAAACGGCCGTGTG 60.898 61.111 34.95 1.63 38.12 3.82
55 56 3.656045 GGTGAAACGGCCGTGTGG 61.656 66.667 34.95 1.14 38.12 4.17
56 57 3.656045 GTGAAACGGCCGTGTGGG 61.656 66.667 34.95 0.21 39.58 4.61
80 81 3.284449 GGTGAACGCCCACACACC 61.284 66.667 9.52 0.00 44.23 4.16
81 82 2.515057 GTGAACGCCCACACACCA 60.515 61.111 3.27 0.00 37.04 4.17
82 83 2.203139 TGAACGCCCACACACCAG 60.203 61.111 0.00 0.00 0.00 4.00
83 84 2.978010 GAACGCCCACACACCAGG 60.978 66.667 0.00 0.00 0.00 4.45
88 89 3.889692 CCCACACACCAGGCCAGT 61.890 66.667 5.01 0.00 0.00 4.00
89 90 2.281761 CCACACACCAGGCCAGTC 60.282 66.667 5.01 0.00 0.00 3.51
90 91 2.281761 CACACACCAGGCCAGTCC 60.282 66.667 5.01 0.00 0.00 3.85
92 93 1.152118 ACACACCAGGCCAGTCCTA 60.152 57.895 5.01 0.00 45.52 2.94
93 94 1.296715 CACACCAGGCCAGTCCTAC 59.703 63.158 5.01 0.00 45.52 3.18
94 95 2.283529 ACACCAGGCCAGTCCTACG 61.284 63.158 5.01 0.00 45.52 3.51
95 96 2.119832 ACCAGGCCAGTCCTACGT 59.880 61.111 5.01 0.00 45.52 3.57
96 97 2.283529 ACCAGGCCAGTCCTACGTG 61.284 63.158 5.01 0.00 45.52 4.49
97 98 1.982395 CCAGGCCAGTCCTACGTGA 60.982 63.158 5.01 0.00 45.52 4.35
98 99 1.215647 CAGGCCAGTCCTACGTGAC 59.784 63.158 5.01 0.00 45.52 3.67
99 100 1.228769 AGGCCAGTCCTACGTGACA 60.229 57.895 5.01 0.00 45.41 3.58
100 101 0.614979 AGGCCAGTCCTACGTGACAT 60.615 55.000 5.01 0.00 45.41 3.06
101 102 0.249398 GGCCAGTCCTACGTGACATT 59.751 55.000 0.00 0.00 37.73 2.71
102 103 1.479323 GGCCAGTCCTACGTGACATTA 59.521 52.381 0.00 0.00 37.73 1.90
103 104 2.481449 GGCCAGTCCTACGTGACATTAG 60.481 54.545 0.00 0.00 37.73 1.73
104 105 2.426024 GCCAGTCCTACGTGACATTAGA 59.574 50.000 8.55 0.00 37.73 2.10
105 106 3.119245 GCCAGTCCTACGTGACATTAGAA 60.119 47.826 8.55 0.00 37.73 2.10
106 107 4.619863 GCCAGTCCTACGTGACATTAGAAA 60.620 45.833 8.55 0.00 37.73 2.52
107 108 4.863131 CCAGTCCTACGTGACATTAGAAAC 59.137 45.833 8.55 0.00 37.73 2.78
108 109 5.466819 CAGTCCTACGTGACATTAGAAACA 58.533 41.667 8.55 0.00 37.73 2.83
109 110 6.100004 CAGTCCTACGTGACATTAGAAACAT 58.900 40.000 8.55 0.00 37.73 2.71
110 111 6.035005 CAGTCCTACGTGACATTAGAAACATG 59.965 42.308 8.55 0.00 37.73 3.21
111 112 4.868171 TCCTACGTGACATTAGAAACATGC 59.132 41.667 0.00 0.00 0.00 4.06
112 113 4.034048 CCTACGTGACATTAGAAACATGCC 59.966 45.833 0.00 0.00 0.00 4.40
113 114 3.407698 ACGTGACATTAGAAACATGCCA 58.592 40.909 0.00 0.00 0.00 4.92
114 115 3.818210 ACGTGACATTAGAAACATGCCAA 59.182 39.130 0.00 0.00 0.00 4.52
115 116 4.083324 ACGTGACATTAGAAACATGCCAAG 60.083 41.667 0.00 0.00 0.00 3.61
116 117 4.154015 CGTGACATTAGAAACATGCCAAGA 59.846 41.667 0.00 0.00 0.00 3.02
117 118 5.163723 CGTGACATTAGAAACATGCCAAGAT 60.164 40.000 0.00 0.00 0.00 2.40
118 119 6.623549 CGTGACATTAGAAACATGCCAAGATT 60.624 38.462 0.00 0.00 0.00 2.40
119 120 6.749118 GTGACATTAGAAACATGCCAAGATTC 59.251 38.462 0.00 0.00 0.00 2.52
120 121 6.433716 TGACATTAGAAACATGCCAAGATTCA 59.566 34.615 0.00 0.00 0.00 2.57
121 122 7.123098 TGACATTAGAAACATGCCAAGATTCAT 59.877 33.333 0.00 0.00 0.00 2.57
122 123 7.262772 ACATTAGAAACATGCCAAGATTCATG 58.737 34.615 0.00 0.00 44.08 3.07
123 124 4.119442 AGAAACATGCCAAGATTCATGC 57.881 40.909 0.00 0.00 42.72 4.06
124 125 2.572191 AACATGCCAAGATTCATGCG 57.428 45.000 0.00 0.00 42.72 4.73
125 126 0.101759 ACATGCCAAGATTCATGCGC 59.898 50.000 0.00 0.00 42.72 6.09
126 127 0.384309 CATGCCAAGATTCATGCGCT 59.616 50.000 9.73 0.00 34.44 5.92
127 128 1.108776 ATGCCAAGATTCATGCGCTT 58.891 45.000 9.73 0.00 0.00 4.68
128 129 1.748950 TGCCAAGATTCATGCGCTTA 58.251 45.000 9.73 0.00 0.00 3.09
129 130 1.401552 TGCCAAGATTCATGCGCTTAC 59.598 47.619 9.73 0.00 0.00 2.34
130 131 1.595489 GCCAAGATTCATGCGCTTACG 60.595 52.381 9.73 0.00 44.07 3.18
131 132 1.933181 CCAAGATTCATGCGCTTACGA 59.067 47.619 9.73 0.00 43.93 3.43
132 133 2.351418 CCAAGATTCATGCGCTTACGAA 59.649 45.455 9.73 6.39 43.93 3.85
133 134 3.345714 CAAGATTCATGCGCTTACGAAC 58.654 45.455 9.73 1.92 43.93 3.95
134 135 1.588404 AGATTCATGCGCTTACGAACG 59.412 47.619 9.73 0.00 43.93 3.95
135 136 0.650512 ATTCATGCGCTTACGAACGG 59.349 50.000 9.73 0.00 43.93 4.44
136 137 0.388778 TTCATGCGCTTACGAACGGA 60.389 50.000 9.73 0.00 43.93 4.69
137 138 1.074319 TCATGCGCTTACGAACGGAC 61.074 55.000 9.73 0.00 43.93 4.79
138 139 2.156446 ATGCGCTTACGAACGGACG 61.156 57.895 9.73 2.26 43.93 4.79
139 140 4.187498 GCGCTTACGAACGGACGC 62.187 66.667 0.00 0.00 43.93 5.19
140 141 3.882844 CGCTTACGAACGGACGCG 61.883 66.667 14.82 14.82 43.93 6.01
141 142 3.539107 GCTTACGAACGGACGCGG 61.539 66.667 12.47 0.00 36.70 6.46
142 143 2.176546 CTTACGAACGGACGCGGA 59.823 61.111 12.47 0.00 36.70 5.54
143 144 1.226491 CTTACGAACGGACGCGGAT 60.226 57.895 12.47 0.00 36.70 4.18
144 145 1.198608 CTTACGAACGGACGCGGATC 61.199 60.000 12.47 0.00 36.70 3.36
145 146 2.597117 TTACGAACGGACGCGGATCC 62.597 60.000 12.47 8.60 36.70 3.36
146 147 4.485834 CGAACGGACGCGGATCCA 62.486 66.667 12.47 0.00 38.87 3.41
147 148 2.884207 GAACGGACGCGGATCCAC 60.884 66.667 12.47 0.00 38.87 4.02
148 149 4.789075 AACGGACGCGGATCCACG 62.789 66.667 20.32 20.32 38.87 4.94
173 174 3.430862 GCGAGATGCAAACGCCCA 61.431 61.111 19.47 0.00 45.35 5.36
174 175 2.480555 CGAGATGCAAACGCCCAC 59.519 61.111 0.00 0.00 0.00 4.61
175 176 2.324330 CGAGATGCAAACGCCCACA 61.324 57.895 0.00 0.00 0.00 4.17
176 177 1.210155 GAGATGCAAACGCCCACAC 59.790 57.895 0.00 0.00 0.00 3.82
177 178 2.126888 GATGCAAACGCCCACACG 60.127 61.111 0.00 0.00 39.50 4.49
189 190 3.720531 CACACGTGTGGGCGTTAA 58.279 55.556 35.65 0.00 43.83 2.01
190 191 1.277440 CACACGTGTGGGCGTTAAC 59.723 57.895 35.65 0.00 43.83 2.01
191 192 1.153409 ACACGTGTGGGCGTTAACA 60.153 52.632 22.71 0.00 43.83 2.41
192 193 0.533308 ACACGTGTGGGCGTTAACAT 60.533 50.000 22.71 0.00 43.83 2.71
193 194 0.589223 CACGTGTGGGCGTTAACATT 59.411 50.000 7.58 0.00 43.83 2.71
194 195 1.002251 CACGTGTGGGCGTTAACATTT 60.002 47.619 7.58 0.00 43.83 2.32
195 196 1.264826 ACGTGTGGGCGTTAACATTTC 59.735 47.619 6.39 0.00 43.04 2.17
196 197 1.400500 CGTGTGGGCGTTAACATTTCC 60.400 52.381 6.39 1.91 0.00 3.13
197 198 0.875728 TGTGGGCGTTAACATTTCCG 59.124 50.000 6.39 0.00 0.00 4.30
198 199 1.158434 GTGGGCGTTAACATTTCCGA 58.842 50.000 6.39 0.00 0.00 4.55
199 200 1.741145 GTGGGCGTTAACATTTCCGAT 59.259 47.619 6.39 0.00 0.00 4.18
200 201 2.162809 GTGGGCGTTAACATTTCCGATT 59.837 45.455 6.39 0.00 0.00 3.34
201 202 2.420722 TGGGCGTTAACATTTCCGATTC 59.579 45.455 6.39 0.00 0.00 2.52
202 203 2.681344 GGGCGTTAACATTTCCGATTCT 59.319 45.455 6.39 0.00 0.00 2.40
203 204 3.128068 GGGCGTTAACATTTCCGATTCTT 59.872 43.478 6.39 0.00 0.00 2.52
204 205 4.095610 GGCGTTAACATTTCCGATTCTTG 58.904 43.478 6.39 0.00 0.00 3.02
205 206 4.379082 GGCGTTAACATTTCCGATTCTTGT 60.379 41.667 6.39 0.00 0.00 3.16
206 207 5.151389 GCGTTAACATTTCCGATTCTTGTT 58.849 37.500 6.39 0.00 35.00 2.83
207 208 5.059221 GCGTTAACATTTCCGATTCTTGTTG 59.941 40.000 6.39 0.00 33.03 3.33
208 209 6.367421 CGTTAACATTTCCGATTCTTGTTGA 58.633 36.000 6.39 0.00 33.03 3.18
209 210 6.302313 CGTTAACATTTCCGATTCTTGTTGAC 59.698 38.462 6.39 0.00 35.00 3.18
210 211 7.360361 GTTAACATTTCCGATTCTTGTTGACT 58.640 34.615 0.00 0.00 35.29 3.41
211 212 6.391227 AACATTTCCGATTCTTGTTGACTT 57.609 33.333 0.00 0.00 0.00 3.01
212 213 6.002062 ACATTTCCGATTCTTGTTGACTTC 57.998 37.500 0.00 0.00 0.00 3.01
213 214 5.530915 ACATTTCCGATTCTTGTTGACTTCA 59.469 36.000 0.00 0.00 0.00 3.02
214 215 6.039270 ACATTTCCGATTCTTGTTGACTTCAA 59.961 34.615 0.00 0.00 0.00 2.69
229 230 7.411486 TTGACTTCAACAAGGGTTCAATAAA 57.589 32.000 0.00 0.00 34.21 1.40
230 231 7.038154 TGACTTCAACAAGGGTTCAATAAAG 57.962 36.000 0.00 0.00 34.21 1.85
231 232 6.831353 TGACTTCAACAAGGGTTCAATAAAGA 59.169 34.615 0.00 0.00 34.21 2.52
232 233 7.013274 TGACTTCAACAAGGGTTCAATAAAGAG 59.987 37.037 0.00 0.00 34.21 2.85
233 234 6.265422 ACTTCAACAAGGGTTCAATAAAGAGG 59.735 38.462 0.00 0.00 34.21 3.69
234 235 4.522789 TCAACAAGGGTTCAATAAAGAGGC 59.477 41.667 0.00 0.00 34.21 4.70
235 236 4.112634 ACAAGGGTTCAATAAAGAGGCA 57.887 40.909 0.00 0.00 0.00 4.75
236 237 4.677182 ACAAGGGTTCAATAAAGAGGCAT 58.323 39.130 0.00 0.00 0.00 4.40
237 238 5.086621 ACAAGGGTTCAATAAAGAGGCATT 58.913 37.500 0.00 0.00 0.00 3.56
238 239 6.252995 ACAAGGGTTCAATAAAGAGGCATTA 58.747 36.000 0.00 0.00 0.00 1.90
239 240 6.378280 ACAAGGGTTCAATAAAGAGGCATTAG 59.622 38.462 0.00 0.00 0.00 1.73
240 241 6.079712 AGGGTTCAATAAAGAGGCATTAGT 57.920 37.500 0.00 0.00 0.00 2.24
241 242 5.888161 AGGGTTCAATAAAGAGGCATTAGTG 59.112 40.000 0.00 0.00 31.50 2.74
242 243 5.652452 GGGTTCAATAAAGAGGCATTAGTGT 59.348 40.000 0.00 0.00 32.02 3.55
243 244 6.152831 GGGTTCAATAAAGAGGCATTAGTGTT 59.847 38.462 0.00 0.00 32.02 3.32
244 245 7.029563 GGTTCAATAAAGAGGCATTAGTGTTG 58.970 38.462 0.00 0.00 32.02 3.33
245 246 7.094377 GGTTCAATAAAGAGGCATTAGTGTTGA 60.094 37.037 0.00 0.00 32.02 3.18
246 247 7.615582 TCAATAAAGAGGCATTAGTGTTGAG 57.384 36.000 0.00 0.00 32.02 3.02
247 248 7.168219 TCAATAAAGAGGCATTAGTGTTGAGT 58.832 34.615 0.00 0.00 32.02 3.41
248 249 7.334421 TCAATAAAGAGGCATTAGTGTTGAGTC 59.666 37.037 0.00 0.00 32.02 3.36
249 250 3.238108 AGAGGCATTAGTGTTGAGTCG 57.762 47.619 0.00 0.00 0.00 4.18
250 251 2.826128 AGAGGCATTAGTGTTGAGTCGA 59.174 45.455 0.00 0.00 0.00 4.20
251 252 3.258372 AGAGGCATTAGTGTTGAGTCGAA 59.742 43.478 0.00 0.00 0.00 3.71
252 253 3.994392 GAGGCATTAGTGTTGAGTCGAAA 59.006 43.478 0.00 0.00 0.00 3.46
253 254 4.579869 AGGCATTAGTGTTGAGTCGAAAT 58.420 39.130 0.00 0.00 0.00 2.17
254 255 5.730550 AGGCATTAGTGTTGAGTCGAAATA 58.269 37.500 0.00 0.00 0.00 1.40
255 256 5.812642 AGGCATTAGTGTTGAGTCGAAATAG 59.187 40.000 0.00 0.00 0.00 1.73
256 257 5.006746 GGCATTAGTGTTGAGTCGAAATAGG 59.993 44.000 0.00 0.00 0.00 2.57
257 258 5.006746 GCATTAGTGTTGAGTCGAAATAGGG 59.993 44.000 0.00 0.00 0.00 3.53
258 259 5.733620 TTAGTGTTGAGTCGAAATAGGGT 57.266 39.130 0.00 0.00 0.00 4.34
259 260 3.926616 AGTGTTGAGTCGAAATAGGGTG 58.073 45.455 0.00 0.00 0.00 4.61
260 261 3.323979 AGTGTTGAGTCGAAATAGGGTGT 59.676 43.478 0.00 0.00 0.00 4.16
261 262 3.432252 GTGTTGAGTCGAAATAGGGTGTG 59.568 47.826 0.00 0.00 0.00 3.82
262 263 3.070446 TGTTGAGTCGAAATAGGGTGTGT 59.930 43.478 0.00 0.00 0.00 3.72
263 264 3.313012 TGAGTCGAAATAGGGTGTGTG 57.687 47.619 0.00 0.00 0.00 3.82
264 265 2.631062 TGAGTCGAAATAGGGTGTGTGT 59.369 45.455 0.00 0.00 0.00 3.72
265 266 2.993899 GAGTCGAAATAGGGTGTGTGTG 59.006 50.000 0.00 0.00 0.00 3.82
266 267 2.073816 GTCGAAATAGGGTGTGTGTGG 58.926 52.381 0.00 0.00 0.00 4.17
267 268 1.002659 TCGAAATAGGGTGTGTGTGGG 59.997 52.381 0.00 0.00 0.00 4.61
268 269 1.834188 GAAATAGGGTGTGTGTGGGG 58.166 55.000 0.00 0.00 0.00 4.96
269 270 0.407918 AAATAGGGTGTGTGTGGGGG 59.592 55.000 0.00 0.00 0.00 5.40
291 292 5.159273 GGGGGCACATTTTTAGAAAATGA 57.841 39.130 24.79 0.00 39.36 2.57
292 293 5.555966 GGGGGCACATTTTTAGAAAATGAA 58.444 37.500 24.79 0.00 39.36 2.57
293 294 5.643348 GGGGGCACATTTTTAGAAAATGAAG 59.357 40.000 24.79 18.61 39.36 3.02
294 295 6.463360 GGGGCACATTTTTAGAAAATGAAGA 58.537 36.000 24.79 0.00 39.36 2.87
295 296 7.105588 GGGGCACATTTTTAGAAAATGAAGAT 58.894 34.615 24.79 7.00 39.36 2.40
296 297 7.607607 GGGGCACATTTTTAGAAAATGAAGATT 59.392 33.333 24.79 6.71 39.36 2.40
297 298 9.651913 GGGCACATTTTTAGAAAATGAAGATTA 57.348 29.630 24.79 0.00 39.36 1.75
310 311 2.537401 GAAGATTACCTTCCGTCCACG 58.463 52.381 0.00 0.00 44.27 4.94
311 312 1.553706 AGATTACCTTCCGTCCACGT 58.446 50.000 0.00 0.00 37.74 4.49
312 313 1.475682 AGATTACCTTCCGTCCACGTC 59.524 52.381 0.00 0.00 37.74 4.34
313 314 0.533951 ATTACCTTCCGTCCACGTCC 59.466 55.000 0.00 0.00 37.74 4.79
314 315 0.827089 TTACCTTCCGTCCACGTCCA 60.827 55.000 0.00 0.00 37.74 4.02
315 316 1.526575 TACCTTCCGTCCACGTCCAC 61.527 60.000 0.00 0.00 37.74 4.02
316 317 2.571216 CCTTCCGTCCACGTCCACT 61.571 63.158 0.00 0.00 37.74 4.00
317 318 1.246056 CCTTCCGTCCACGTCCACTA 61.246 60.000 0.00 0.00 37.74 2.74
318 319 0.109412 CTTCCGTCCACGTCCACTAC 60.109 60.000 0.00 0.00 37.74 2.73
319 320 0.822944 TTCCGTCCACGTCCACTACA 60.823 55.000 0.00 0.00 37.74 2.74
320 321 0.609957 TCCGTCCACGTCCACTACAT 60.610 55.000 0.00 0.00 37.74 2.29
321 322 0.179145 CCGTCCACGTCCACTACATC 60.179 60.000 0.00 0.00 37.74 3.06
322 323 0.524414 CGTCCACGTCCACTACATCA 59.476 55.000 0.00 0.00 34.11 3.07
323 324 1.134367 CGTCCACGTCCACTACATCAT 59.866 52.381 0.00 0.00 34.11 2.45
324 325 2.356695 CGTCCACGTCCACTACATCATA 59.643 50.000 0.00 0.00 34.11 2.15
325 326 3.181494 CGTCCACGTCCACTACATCATAA 60.181 47.826 0.00 0.00 34.11 1.90
326 327 4.499188 CGTCCACGTCCACTACATCATAAT 60.499 45.833 0.00 0.00 34.11 1.28
327 328 4.745125 GTCCACGTCCACTACATCATAATG 59.255 45.833 0.00 0.00 38.93 1.90
328 329 4.647399 TCCACGTCCACTACATCATAATGA 59.353 41.667 0.00 0.00 36.67 2.57
329 330 5.304357 TCCACGTCCACTACATCATAATGAT 59.696 40.000 0.00 0.00 37.65 2.45
393 394 1.390123 CATGTGGTACAAGCTCGTTCG 59.610 52.381 0.00 0.00 44.16 3.95
469 470 4.287766 AGATGACAAAACACCTAGGTCC 57.712 45.455 12.84 0.00 0.00 4.46
590 591 4.638865 CCCCAAAAATAGTTACTCCCTTCG 59.361 45.833 0.00 0.00 0.00 3.79
604 605 5.617252 ACTCCCTTCGTCTCACAATTTAAA 58.383 37.500 0.00 0.00 0.00 1.52
611 612 8.076178 CCTTCGTCTCACAATTTAAAATCACTT 58.924 33.333 0.00 0.00 0.00 3.16
612 613 9.450807 CTTCGTCTCACAATTTAAAATCACTTT 57.549 29.630 0.00 0.00 0.00 2.66
613 614 9.445786 TTCGTCTCACAATTTAAAATCACTTTC 57.554 29.630 0.00 0.00 0.00 2.62
614 615 8.836413 TCGTCTCACAATTTAAAATCACTTTCT 58.164 29.630 0.00 0.00 0.00 2.52
728 729 5.178623 CGCTGTACTTGGACAAAATCTTGTA 59.821 40.000 0.00 0.00 45.98 2.41
1600 1682 9.118300 GACAAAGGTGAGAGATTATTGATGATT 57.882 33.333 0.00 0.00 0.00 2.57
1894 1986 7.062839 TGTTTTTGTTTTGAATGGAGAACTTCG 59.937 33.333 0.00 0.00 0.00 3.79
2058 2154 9.059023 AGAAGGTAATTATTACTCCCTCTGTTT 57.941 33.333 13.86 0.00 36.39 2.83
2863 3758 0.462047 GTCTTGTCCGCCACATAGGG 60.462 60.000 0.00 0.00 38.09 3.53
2884 3779 2.738964 GCAAAAACGGTAAAACCTGCCA 60.739 45.455 0.00 0.00 35.66 4.92
2895 3794 1.789576 AACCTGCCAGGGGGTTACAG 61.790 60.000 16.70 0.00 43.13 2.74
2903 3802 0.974383 AGGGGGTTACAGTCAGAACG 59.026 55.000 0.00 0.00 0.00 3.95
2927 4857 9.436957 ACGTTTTTCTAGAGTTGTCATATGAAT 57.563 29.630 7.07 0.00 0.00 2.57
3115 5054 2.485814 GGAAAAGAGTGTGAGACCATGC 59.514 50.000 0.00 0.00 0.00 4.06
3129 5076 7.774625 TGTGAGACCATGCATTTATTCTATTGA 59.225 33.333 0.00 0.00 0.00 2.57
3337 5298 6.818644 TGATCTAAGAAGTTGTAGCATGGTTC 59.181 38.462 1.12 0.00 0.00 3.62
3394 5360 4.124970 GAGATTATGTTACCCCCGTGAAC 58.875 47.826 0.00 0.00 0.00 3.18
3395 5361 3.520317 AGATTATGTTACCCCCGTGAACA 59.480 43.478 0.00 0.00 37.47 3.18
3508 5503 5.201713 TCTAATGCACTTCCCTTCTATCG 57.798 43.478 0.00 0.00 0.00 2.92
3550 5545 8.627487 TTTCAATTGAACACATCTTGTACAAC 57.373 30.769 20.35 0.00 37.51 3.32
3633 5628 6.235664 TGGAAGAATCTACCCAGTTAAACAC 58.764 40.000 0.94 0.00 0.00 3.32
3869 5878 5.145564 GGGATCAAGGAGGTACACACTATA 58.854 45.833 0.00 0.00 0.00 1.31
4146 6162 8.267894 ACATAACATCCAATAAAGCTAGTGTCT 58.732 33.333 0.00 0.00 0.00 3.41
4156 6172 1.065854 AGCTAGTGTCTGTTGGATGGC 60.066 52.381 0.00 0.00 0.00 4.40
4239 6256 6.093633 CCGGTTTAAAAGGAGAAGATTGGTAG 59.906 42.308 5.30 0.00 0.00 3.18
4495 6516 2.685106 TGGCAATAGGGAACAACCAA 57.315 45.000 0.00 0.00 41.20 3.67
4577 6598 4.405680 CCATACCATCTCAACCTCACTACA 59.594 45.833 0.00 0.00 0.00 2.74
4618 6639 2.879646 TGTACAGGTAAAAACAAGGGCG 59.120 45.455 0.00 0.00 0.00 6.13
4624 6645 2.817844 GGTAAAAACAAGGGCGTGAGAT 59.182 45.455 0.00 0.00 0.00 2.75
4625 6646 3.254903 GGTAAAAACAAGGGCGTGAGATT 59.745 43.478 0.00 0.00 0.00 2.40
4656 6698 4.511527 ACTTAGTCACATTGGCTCTCATG 58.488 43.478 0.00 0.00 32.64 3.07
4680 6722 2.240493 AAACTACTTGTGAGCGCAGT 57.760 45.000 11.47 6.34 0.00 4.40
4893 8472 3.245016 ACTCTCTTTGACATGGGATGCAA 60.245 43.478 0.00 0.00 0.00 4.08
4992 8572 2.457813 TCCAAATCATGTCCATGGGG 57.542 50.000 13.02 1.33 39.24 4.96
5262 8842 5.810095 ACTCTTCCTAGAAAGATTTGGTGG 58.190 41.667 0.00 0.00 34.85 4.61
5299 8879 6.719301 CATCCATCAAGGCTAGATTTATCCT 58.281 40.000 0.00 0.00 37.29 3.24
5304 8884 7.986320 CCATCAAGGCTAGATTTATCCTATCAG 59.014 40.741 0.00 0.00 0.00 2.90
5307 8887 6.790232 AGGCTAGATTTATCCTATCAGCTC 57.210 41.667 0.00 0.00 32.10 4.09
5369 8949 2.943978 CGGCGACCCTCAAACCTCT 61.944 63.158 0.00 0.00 0.00 3.69
5403 8983 0.948623 CAACATTGTCCGGACTGCGA 60.949 55.000 33.39 17.72 0.00 5.10
5428 9008 3.741388 GCCATCTAACGCAGGTCTGTATT 60.741 47.826 0.00 0.00 0.00 1.89
5440 9020 4.071875 TGTATTGGTCCGCGGCGT 62.072 61.111 23.51 6.54 0.00 5.68
5528 9110 3.063485 GTTCTGCTCAGGAAGACAAGAC 58.937 50.000 0.00 0.00 0.00 3.01
5529 9111 1.270826 TCTGCTCAGGAAGACAAGACG 59.729 52.381 0.00 0.00 0.00 4.18
5530 9112 0.318441 TGCTCAGGAAGACAAGACGG 59.682 55.000 0.00 0.00 0.00 4.79
5554 9136 1.745489 GCGGCTACCTGAAGTTGGG 60.745 63.158 0.00 0.00 0.00 4.12
5716 9301 2.353269 TCGTTTGTGTTCATGCGTCTTT 59.647 40.909 0.00 0.00 0.00 2.52
5748 9335 6.546428 TCCTTCCGATCTACATTTCTCTTT 57.454 37.500 0.00 0.00 0.00 2.52
5756 9343 5.509716 TCTACATTTCTCTTTATCGGCGA 57.490 39.130 13.87 13.87 0.00 5.54
5819 9410 5.029014 CACGACGACTTTCCAACTATCTAG 58.971 45.833 0.00 0.00 0.00 2.43
5825 9416 7.889469 ACGACTTTCCAACTATCTAGTACAAA 58.111 34.615 0.00 0.00 34.99 2.83
5888 9762 4.760047 GCCTTCGGCTCGCTCCAA 62.760 66.667 0.00 0.00 46.69 3.53
5902 9776 2.076863 GCTCCAATGCTTGTAGTCGTT 58.923 47.619 0.00 0.00 0.00 3.85
5912 9786 0.892755 TGTAGTCGTTGCTAGGTGGG 59.107 55.000 0.00 0.00 0.00 4.61
5915 9789 1.003718 GTCGTTGCTAGGTGGGCTT 60.004 57.895 0.00 0.00 0.00 4.35
5916 9790 0.248289 GTCGTTGCTAGGTGGGCTTA 59.752 55.000 0.00 0.00 0.00 3.09
5919 9793 0.107165 GTTGCTAGGTGGGCTTAGGG 60.107 60.000 0.00 0.00 0.00 3.53
5921 9795 2.073101 GCTAGGTGGGCTTAGGGCT 61.073 63.158 0.00 0.00 41.46 5.19
5931 9805 2.027100 GGGCTTAGGGCTATGGATGTAC 60.027 54.545 0.00 0.00 41.46 2.90
6024 9903 2.417379 CCCATCTCCTGTGTGAACTACG 60.417 54.545 0.00 0.00 0.00 3.51
6039 9919 4.773674 TGAACTACGATTGAAACCTCCCTA 59.226 41.667 0.00 0.00 0.00 3.53
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
6 7 3.127533 GGTGTGTGGGCGAGATGC 61.128 66.667 0.00 0.00 45.38 3.91
7 8 1.742880 CTGGTGTGTGGGCGAGATG 60.743 63.158 0.00 0.00 0.00 2.90
8 9 2.665000 CTGGTGTGTGGGCGAGAT 59.335 61.111 0.00 0.00 0.00 2.75
9 10 4.314440 GCTGGTGTGTGGGCGAGA 62.314 66.667 0.00 0.00 0.00 4.04
14 15 4.351054 GAGGGGCTGGTGTGTGGG 62.351 72.222 0.00 0.00 0.00 4.61
15 16 4.351054 GGAGGGGCTGGTGTGTGG 62.351 72.222 0.00 0.00 0.00 4.17
16 17 4.351054 GGGAGGGGCTGGTGTGTG 62.351 72.222 0.00 0.00 0.00 3.82
26 27 2.824880 TTTCACCACACGGGAGGGG 61.825 63.158 5.98 0.00 41.15 4.79
27 28 1.599797 GTTTCACCACACGGGAGGG 60.600 63.158 5.98 1.91 41.15 4.30
28 29 1.959226 CGTTTCACCACACGGGAGG 60.959 63.158 0.00 0.00 41.15 4.30
29 30 3.637714 CGTTTCACCACACGGGAG 58.362 61.111 0.00 0.00 41.15 4.30
33 34 4.007940 CGGCCGTTTCACCACACG 62.008 66.667 19.50 0.00 36.12 4.49
34 35 2.898343 ACGGCCGTTTCACCACAC 60.898 61.111 28.70 0.00 0.00 3.82
35 36 2.897846 CACGGCCGTTTCACCACA 60.898 61.111 32.11 0.00 0.00 4.17
36 37 2.898343 ACACGGCCGTTTCACCAC 60.898 61.111 32.11 0.00 0.00 4.16
37 38 2.897846 CACACGGCCGTTTCACCA 60.898 61.111 32.11 0.00 0.00 4.17
38 39 3.656045 CCACACGGCCGTTTCACC 61.656 66.667 32.11 0.00 0.00 4.02
39 40 3.656045 CCCACACGGCCGTTTCAC 61.656 66.667 32.11 0.00 0.00 3.18
63 64 3.284449 GGTGTGTGGGCGTTCACC 61.284 66.667 7.58 0.00 42.40 4.02
64 65 2.515057 TGGTGTGTGGGCGTTCAC 60.515 61.111 3.83 3.83 38.09 3.18
65 66 2.203139 CTGGTGTGTGGGCGTTCA 60.203 61.111 0.00 0.00 0.00 3.18
66 67 2.978010 CCTGGTGTGTGGGCGTTC 60.978 66.667 0.00 0.00 0.00 3.95
71 72 3.850098 GACTGGCCTGGTGTGTGGG 62.850 68.421 14.82 0.00 0.00 4.61
72 73 2.281761 GACTGGCCTGGTGTGTGG 60.282 66.667 14.82 0.00 0.00 4.17
73 74 2.281761 GGACTGGCCTGGTGTGTG 60.282 66.667 14.82 0.00 0.00 3.82
82 83 0.249398 AATGTCACGTAGGACTGGCC 59.751 55.000 0.00 0.00 38.61 5.36
83 84 2.426024 TCTAATGTCACGTAGGACTGGC 59.574 50.000 7.46 0.00 38.61 4.85
84 85 4.713824 TTCTAATGTCACGTAGGACTGG 57.286 45.455 7.46 0.00 38.61 4.00
85 86 5.466819 TGTTTCTAATGTCACGTAGGACTG 58.533 41.667 7.46 0.00 38.61 3.51
86 87 5.717078 TGTTTCTAATGTCACGTAGGACT 57.283 39.130 7.46 0.00 38.61 3.85
87 88 5.220416 GCATGTTTCTAATGTCACGTAGGAC 60.220 44.000 0.00 0.00 38.29 3.85
88 89 4.868171 GCATGTTTCTAATGTCACGTAGGA 59.132 41.667 0.00 0.00 0.00 2.94
89 90 4.034048 GGCATGTTTCTAATGTCACGTAGG 59.966 45.833 0.00 0.00 29.85 3.18
90 91 4.629634 TGGCATGTTTCTAATGTCACGTAG 59.370 41.667 0.00 0.00 34.81 3.51
91 92 4.570930 TGGCATGTTTCTAATGTCACGTA 58.429 39.130 0.00 0.00 34.81 3.57
92 93 3.407698 TGGCATGTTTCTAATGTCACGT 58.592 40.909 0.00 0.00 34.81 4.49
93 94 4.154015 TCTTGGCATGTTTCTAATGTCACG 59.846 41.667 0.00 0.00 39.27 4.35
94 95 5.627499 TCTTGGCATGTTTCTAATGTCAC 57.373 39.130 0.00 0.00 39.27 3.67
95 96 6.433716 TGAATCTTGGCATGTTTCTAATGTCA 59.566 34.615 19.01 0.00 37.85 3.58
96 97 6.855836 TGAATCTTGGCATGTTTCTAATGTC 58.144 36.000 19.01 0.00 0.00 3.06
97 98 6.839124 TGAATCTTGGCATGTTTCTAATGT 57.161 33.333 19.01 0.00 0.00 2.71
98 99 6.200286 GCATGAATCTTGGCATGTTTCTAATG 59.800 38.462 19.01 16.32 42.86 1.90
99 100 6.278363 GCATGAATCTTGGCATGTTTCTAAT 58.722 36.000 19.01 7.85 42.86 1.73
100 101 5.653507 GCATGAATCTTGGCATGTTTCTAA 58.346 37.500 19.01 6.33 42.86 2.10
101 102 4.201940 CGCATGAATCTTGGCATGTTTCTA 60.202 41.667 19.01 10.19 42.86 2.10
102 103 3.428452 CGCATGAATCTTGGCATGTTTCT 60.428 43.478 19.01 7.54 42.86 2.52
103 104 2.855963 CGCATGAATCTTGGCATGTTTC 59.144 45.455 14.12 14.12 42.86 2.78
104 105 2.883574 CGCATGAATCTTGGCATGTTT 58.116 42.857 0.00 0.00 42.86 2.83
105 106 1.470285 GCGCATGAATCTTGGCATGTT 60.470 47.619 0.30 0.00 42.86 2.71
106 107 0.101759 GCGCATGAATCTTGGCATGT 59.898 50.000 0.30 0.00 42.86 3.21
107 108 0.384309 AGCGCATGAATCTTGGCATG 59.616 50.000 11.47 0.00 43.56 4.06
108 109 1.108776 AAGCGCATGAATCTTGGCAT 58.891 45.000 11.47 0.00 0.00 4.40
109 110 1.401552 GTAAGCGCATGAATCTTGGCA 59.598 47.619 11.47 0.00 0.00 4.92
110 111 1.595489 CGTAAGCGCATGAATCTTGGC 60.595 52.381 11.47 0.93 0.00 4.52
111 112 1.933181 TCGTAAGCGCATGAATCTTGG 59.067 47.619 11.47 0.00 38.14 3.61
112 113 3.345714 GTTCGTAAGCGCATGAATCTTG 58.654 45.455 11.47 0.00 38.14 3.02
113 114 2.029244 CGTTCGTAAGCGCATGAATCTT 59.971 45.455 11.47 0.00 38.14 2.40
114 115 1.588404 CGTTCGTAAGCGCATGAATCT 59.412 47.619 11.47 0.00 38.14 2.40
115 116 1.332028 CCGTTCGTAAGCGCATGAATC 60.332 52.381 11.47 1.76 38.14 2.52
116 117 0.650512 CCGTTCGTAAGCGCATGAAT 59.349 50.000 11.47 0.00 38.14 2.57
117 118 0.388778 TCCGTTCGTAAGCGCATGAA 60.389 50.000 11.47 3.92 38.14 2.57
118 119 1.074319 GTCCGTTCGTAAGCGCATGA 61.074 55.000 11.47 0.00 38.14 3.07
119 120 1.343821 GTCCGTTCGTAAGCGCATG 59.656 57.895 11.47 0.00 38.14 4.06
120 121 2.156446 CGTCCGTTCGTAAGCGCAT 61.156 57.895 11.47 0.00 38.14 4.73
121 122 2.801996 CGTCCGTTCGTAAGCGCA 60.802 61.111 11.47 0.00 38.14 6.09
122 123 4.187498 GCGTCCGTTCGTAAGCGC 62.187 66.667 0.00 0.00 38.14 5.92
123 124 3.882844 CGCGTCCGTTCGTAAGCG 61.883 66.667 0.00 4.01 41.56 4.68
124 125 3.539107 CCGCGTCCGTTCGTAAGC 61.539 66.667 4.92 0.00 37.18 3.09
125 126 1.198608 GATCCGCGTCCGTTCGTAAG 61.199 60.000 4.92 0.00 0.00 2.34
126 127 1.226379 GATCCGCGTCCGTTCGTAA 60.226 57.895 4.92 0.00 0.00 3.18
127 128 2.404789 GATCCGCGTCCGTTCGTA 59.595 61.111 4.92 0.00 0.00 3.43
128 129 4.487412 GGATCCGCGTCCGTTCGT 62.487 66.667 4.92 0.00 0.00 3.85
129 130 4.485834 TGGATCCGCGTCCGTTCG 62.486 66.667 7.39 0.00 41.35 3.95
130 131 2.884207 GTGGATCCGCGTCCGTTC 60.884 66.667 10.09 0.00 41.35 3.95
131 132 4.789075 CGTGGATCCGCGTCCGTT 62.789 66.667 34.27 0.00 43.86 4.44
149 150 2.324330 TTTGCATCTCGCCCACACG 61.324 57.895 0.00 0.00 41.33 4.49
150 151 1.210155 GTTTGCATCTCGCCCACAC 59.790 57.895 0.00 0.00 41.33 3.82
151 152 2.324330 CGTTTGCATCTCGCCCACA 61.324 57.895 0.00 0.00 41.33 4.17
152 153 2.480555 CGTTTGCATCTCGCCCAC 59.519 61.111 0.00 0.00 41.33 4.61
153 154 3.430862 GCGTTTGCATCTCGCCCA 61.431 61.111 16.09 0.00 43.41 5.36
157 158 2.324330 TGTGGGCGTTTGCATCTCG 61.324 57.895 0.00 0.00 45.35 4.04
158 159 1.210155 GTGTGGGCGTTTGCATCTC 59.790 57.895 0.00 0.00 45.35 2.75
159 160 2.616330 CGTGTGGGCGTTTGCATCT 61.616 57.895 0.00 0.00 45.35 2.90
160 161 2.126888 CGTGTGGGCGTTTGCATC 60.127 61.111 0.00 0.00 45.35 3.91
161 162 2.904866 ACGTGTGGGCGTTTGCAT 60.905 55.556 0.00 0.00 43.04 3.96
162 163 3.882013 CACGTGTGGGCGTTTGCA 61.882 61.111 7.58 0.00 43.83 4.08
163 164 3.883180 ACACGTGTGGGCGTTTGC 61.883 61.111 22.71 0.00 43.83 3.68
164 165 2.024022 CACACGTGTGGGCGTTTG 59.976 61.111 35.65 12.14 43.83 2.93
176 177 1.400500 GGAAATGTTAACGCCCACACG 60.400 52.381 0.26 0.00 39.50 4.49
177 178 1.400500 CGGAAATGTTAACGCCCACAC 60.400 52.381 0.26 0.00 0.00 3.82
178 179 0.875728 CGGAAATGTTAACGCCCACA 59.124 50.000 0.26 0.00 0.00 4.17
179 180 1.158434 TCGGAAATGTTAACGCCCAC 58.842 50.000 0.26 0.00 0.00 4.61
180 181 2.116827 ATCGGAAATGTTAACGCCCA 57.883 45.000 0.26 0.00 0.00 5.36
181 182 2.681344 AGAATCGGAAATGTTAACGCCC 59.319 45.455 0.26 0.00 0.00 6.13
182 183 4.095610 CAAGAATCGGAAATGTTAACGCC 58.904 43.478 0.26 0.00 0.00 5.68
183 184 4.719040 ACAAGAATCGGAAATGTTAACGC 58.281 39.130 0.26 0.00 0.00 4.84
184 185 6.302313 GTCAACAAGAATCGGAAATGTTAACG 59.698 38.462 0.26 0.00 33.24 3.18
185 186 7.360361 AGTCAACAAGAATCGGAAATGTTAAC 58.640 34.615 0.00 0.00 33.24 2.01
186 187 7.504924 AGTCAACAAGAATCGGAAATGTTAA 57.495 32.000 0.00 0.00 33.24 2.01
187 188 7.227711 TGAAGTCAACAAGAATCGGAAATGTTA 59.772 33.333 0.00 0.00 33.24 2.41
188 189 6.039270 TGAAGTCAACAAGAATCGGAAATGTT 59.961 34.615 0.00 0.00 34.74 2.71
189 190 5.530915 TGAAGTCAACAAGAATCGGAAATGT 59.469 36.000 0.00 0.00 0.00 2.71
190 191 6.000891 TGAAGTCAACAAGAATCGGAAATG 57.999 37.500 0.00 0.00 0.00 2.32
191 192 6.633500 TTGAAGTCAACAAGAATCGGAAAT 57.367 33.333 0.00 0.00 0.00 2.17
205 206 7.340743 TCTTTATTGAACCCTTGTTGAAGTCAA 59.659 33.333 0.00 0.00 31.04 3.18
206 207 6.831353 TCTTTATTGAACCCTTGTTGAAGTCA 59.169 34.615 0.00 0.00 31.04 3.41
207 208 7.272037 TCTTTATTGAACCCTTGTTGAAGTC 57.728 36.000 0.00 0.00 31.04 3.01
208 209 6.265422 CCTCTTTATTGAACCCTTGTTGAAGT 59.735 38.462 0.00 0.00 31.04 3.01
209 210 6.681777 CCTCTTTATTGAACCCTTGTTGAAG 58.318 40.000 0.00 0.00 31.04 3.02
210 211 5.010617 GCCTCTTTATTGAACCCTTGTTGAA 59.989 40.000 0.00 0.00 33.97 2.69
211 212 4.522789 GCCTCTTTATTGAACCCTTGTTGA 59.477 41.667 0.00 0.00 33.97 3.18
212 213 4.280677 TGCCTCTTTATTGAACCCTTGTTG 59.719 41.667 0.00 0.00 33.97 3.33
213 214 4.479158 TGCCTCTTTATTGAACCCTTGTT 58.521 39.130 0.00 0.00 37.42 2.83
214 215 4.112634 TGCCTCTTTATTGAACCCTTGT 57.887 40.909 0.00 0.00 0.00 3.16
215 216 5.665916 AATGCCTCTTTATTGAACCCTTG 57.334 39.130 0.00 0.00 0.00 3.61
216 217 6.378280 CACTAATGCCTCTTTATTGAACCCTT 59.622 38.462 0.00 0.00 0.00 3.95
217 218 5.888161 CACTAATGCCTCTTTATTGAACCCT 59.112 40.000 0.00 0.00 0.00 4.34
218 219 5.652452 ACACTAATGCCTCTTTATTGAACCC 59.348 40.000 0.00 0.00 0.00 4.11
219 220 6.759497 ACACTAATGCCTCTTTATTGAACC 57.241 37.500 0.00 0.00 0.00 3.62
220 221 7.816640 TCAACACTAATGCCTCTTTATTGAAC 58.183 34.615 0.00 0.00 0.00 3.18
221 222 7.665559 ACTCAACACTAATGCCTCTTTATTGAA 59.334 33.333 0.00 0.00 0.00 2.69
222 223 7.168219 ACTCAACACTAATGCCTCTTTATTGA 58.832 34.615 0.00 0.00 0.00 2.57
223 224 7.383102 ACTCAACACTAATGCCTCTTTATTG 57.617 36.000 0.00 0.00 0.00 1.90
224 225 6.313905 CGACTCAACACTAATGCCTCTTTATT 59.686 38.462 0.00 0.00 0.00 1.40
225 226 5.812642 CGACTCAACACTAATGCCTCTTTAT 59.187 40.000 0.00 0.00 0.00 1.40
226 227 5.047590 TCGACTCAACACTAATGCCTCTTTA 60.048 40.000 0.00 0.00 0.00 1.85
227 228 3.997021 CGACTCAACACTAATGCCTCTTT 59.003 43.478 0.00 0.00 0.00 2.52
228 229 3.258372 TCGACTCAACACTAATGCCTCTT 59.742 43.478 0.00 0.00 0.00 2.85
229 230 2.826128 TCGACTCAACACTAATGCCTCT 59.174 45.455 0.00 0.00 0.00 3.69
230 231 3.232213 TCGACTCAACACTAATGCCTC 57.768 47.619 0.00 0.00 0.00 4.70
231 232 3.678056 TTCGACTCAACACTAATGCCT 57.322 42.857 0.00 0.00 0.00 4.75
232 233 4.946784 ATTTCGACTCAACACTAATGCC 57.053 40.909 0.00 0.00 0.00 4.40
233 234 5.006746 CCCTATTTCGACTCAACACTAATGC 59.993 44.000 0.00 0.00 0.00 3.56
234 235 6.036083 CACCCTATTTCGACTCAACACTAATG 59.964 42.308 0.00 0.00 0.00 1.90
235 236 6.106673 CACCCTATTTCGACTCAACACTAAT 58.893 40.000 0.00 0.00 0.00 1.73
236 237 5.011329 ACACCCTATTTCGACTCAACACTAA 59.989 40.000 0.00 0.00 0.00 2.24
237 238 4.525487 ACACCCTATTTCGACTCAACACTA 59.475 41.667 0.00 0.00 0.00 2.74
238 239 3.323979 ACACCCTATTTCGACTCAACACT 59.676 43.478 0.00 0.00 0.00 3.55
239 240 3.432252 CACACCCTATTTCGACTCAACAC 59.568 47.826 0.00 0.00 0.00 3.32
240 241 3.070446 ACACACCCTATTTCGACTCAACA 59.930 43.478 0.00 0.00 0.00 3.33
241 242 3.432252 CACACACCCTATTTCGACTCAAC 59.568 47.826 0.00 0.00 0.00 3.18
242 243 3.070446 ACACACACCCTATTTCGACTCAA 59.930 43.478 0.00 0.00 0.00 3.02
243 244 2.631062 ACACACACCCTATTTCGACTCA 59.369 45.455 0.00 0.00 0.00 3.41
244 245 2.993899 CACACACACCCTATTTCGACTC 59.006 50.000 0.00 0.00 0.00 3.36
245 246 2.289444 CCACACACACCCTATTTCGACT 60.289 50.000 0.00 0.00 0.00 4.18
246 247 2.073816 CCACACACACCCTATTTCGAC 58.926 52.381 0.00 0.00 0.00 4.20
247 248 1.002659 CCCACACACACCCTATTTCGA 59.997 52.381 0.00 0.00 0.00 3.71
248 249 1.448985 CCCACACACACCCTATTTCG 58.551 55.000 0.00 0.00 0.00 3.46
249 250 1.615919 CCCCCACACACACCCTATTTC 60.616 57.143 0.00 0.00 0.00 2.17
250 251 0.407918 CCCCCACACACACCCTATTT 59.592 55.000 0.00 0.00 0.00 1.40
251 252 2.083715 CCCCCACACACACCCTATT 58.916 57.895 0.00 0.00 0.00 1.73
252 253 3.835134 CCCCCACACACACCCTAT 58.165 61.111 0.00 0.00 0.00 2.57
269 270 5.159273 TCATTTTCTAAAAATGTGCCCCC 57.841 39.130 19.22 0.00 38.44 5.40
270 271 6.463360 TCTTCATTTTCTAAAAATGTGCCCC 58.537 36.000 19.22 0.00 38.44 5.80
271 272 8.552083 AATCTTCATTTTCTAAAAATGTGCCC 57.448 30.769 19.22 0.00 38.44 5.36
291 292 1.897802 ACGTGGACGGAAGGTAATCTT 59.102 47.619 3.93 0.00 44.95 2.40
292 293 1.475682 GACGTGGACGGAAGGTAATCT 59.524 52.381 0.00 0.00 44.95 2.40
293 294 1.470458 GGACGTGGACGGAAGGTAATC 60.470 57.143 0.00 0.00 44.95 1.75
294 295 0.533951 GGACGTGGACGGAAGGTAAT 59.466 55.000 0.00 0.00 44.95 1.89
295 296 0.827089 TGGACGTGGACGGAAGGTAA 60.827 55.000 0.00 0.00 44.95 2.85
296 297 1.228521 TGGACGTGGACGGAAGGTA 60.229 57.895 0.00 0.00 44.95 3.08
297 298 2.522436 TGGACGTGGACGGAAGGT 60.522 61.111 0.00 0.00 44.95 3.50
298 299 1.246056 TAGTGGACGTGGACGGAAGG 61.246 60.000 0.00 0.00 44.95 3.46
299 300 0.109412 GTAGTGGACGTGGACGGAAG 60.109 60.000 0.00 0.00 44.95 3.46
300 301 0.822944 TGTAGTGGACGTGGACGGAA 60.823 55.000 0.00 0.00 44.95 4.30
301 302 0.609957 ATGTAGTGGACGTGGACGGA 60.610 55.000 0.00 0.00 44.95 4.69
302 303 0.179145 GATGTAGTGGACGTGGACGG 60.179 60.000 0.00 0.00 44.95 4.79
303 304 0.524414 TGATGTAGTGGACGTGGACG 59.476 55.000 0.00 0.00 46.33 4.79
304 305 2.961526 ATGATGTAGTGGACGTGGAC 57.038 50.000 0.00 0.00 0.00 4.02
305 306 4.647399 TCATTATGATGTAGTGGACGTGGA 59.353 41.667 0.00 0.00 34.77 4.02
306 307 4.944048 TCATTATGATGTAGTGGACGTGG 58.056 43.478 0.00 0.00 34.77 4.94
307 308 6.457851 CATCATTATGATGTAGTGGACGTG 57.542 41.667 22.94 0.00 46.80 4.49
317 318 6.349363 GATGACTGCATGCATCATTATGATGT 60.349 38.462 29.63 19.05 44.18 3.06
318 319 6.030228 GATGACTGCATGCATCATTATGATG 58.970 40.000 29.63 25.86 44.64 3.07
319 320 5.946377 AGATGACTGCATGCATCATTATGAT 59.054 36.000 29.63 17.44 42.52 2.45
320 321 5.313712 AGATGACTGCATGCATCATTATGA 58.686 37.500 29.63 13.53 42.52 2.15
321 322 5.629079 AGATGACTGCATGCATCATTATG 57.371 39.130 29.63 18.34 42.52 1.90
322 323 5.535030 ACAAGATGACTGCATGCATCATTAT 59.465 36.000 29.63 22.92 42.52 1.28
323 324 4.885325 ACAAGATGACTGCATGCATCATTA 59.115 37.500 29.63 16.07 42.52 1.90
324 325 3.699538 ACAAGATGACTGCATGCATCATT 59.300 39.130 29.63 20.37 42.52 2.57
325 326 3.288092 ACAAGATGACTGCATGCATCAT 58.712 40.909 29.54 29.54 42.52 2.45
326 327 2.718563 ACAAGATGACTGCATGCATCA 58.281 42.857 22.97 24.26 42.52 3.07
327 328 4.514066 TCATACAAGATGACTGCATGCATC 59.486 41.667 22.97 19.75 40.85 3.91
328 329 4.457466 TCATACAAGATGACTGCATGCAT 58.543 39.130 22.97 11.62 34.11 3.96
329 330 3.876341 TCATACAAGATGACTGCATGCA 58.124 40.909 21.29 21.29 34.11 3.96
330 331 4.788840 GCTTCATACAAGATGACTGCATGC 60.789 45.833 11.82 11.82 34.11 4.06
331 332 4.334481 TGCTTCATACAAGATGACTGCATG 59.666 41.667 9.13 0.00 34.87 4.06
414 415 3.129638 TGCCGGTTATGCAACTTTTATCC 59.870 43.478 1.90 0.00 35.40 2.59
440 441 5.063880 AGGTGTTTTGTCATCTTGTCCTAC 58.936 41.667 0.00 0.00 0.00 3.18
556 557 7.978099 AACTATTTTTGGGGCATCTCTAAAT 57.022 32.000 0.00 0.00 0.00 1.40
645 646 7.560368 CAGAGTACTCCATCTGTCCTAAAATT 58.440 38.462 19.38 0.00 38.49 1.82
1351 1408 1.680522 CGGTGAGCCATAGGAGCAGT 61.681 60.000 0.00 0.00 34.09 4.40
1600 1682 4.352893 TCAGGGAGACAGTGACATCAATA 58.647 43.478 0.00 0.00 0.00 1.90
1894 1986 1.869342 GCGGCCAATAATCAATGCACC 60.869 52.381 2.24 0.00 0.00 5.01
2058 2154 7.942341 AGTACAAAGTTGGGTCATCTATTTTGA 59.058 33.333 0.00 0.00 0.00 2.69
2361 2527 6.644347 AGGAAAGATATTGTGACGATCAAGT 58.356 36.000 0.00 0.00 0.00 3.16
2863 3758 1.862201 GGCAGGTTTTACCGTTTTTGC 59.138 47.619 0.00 0.00 44.90 3.68
2869 3764 1.074248 CCCTGGCAGGTTTTACCGT 59.926 57.895 30.68 0.00 44.90 4.83
2884 3779 0.974383 CGTTCTGACTGTAACCCCCT 59.026 55.000 0.00 0.00 0.00 4.79
2895 3794 6.255020 TGACAACTCTAGAAAAACGTTCTGAC 59.745 38.462 0.00 0.00 0.00 3.51
2903 3802 9.907576 CGATTCATATGACAACTCTAGAAAAAC 57.092 33.333 4.48 0.00 0.00 2.43
2927 4857 0.614294 TTCCAAATTACCCGCCTCGA 59.386 50.000 0.00 0.00 0.00 4.04
3115 5054 9.715123 TGCATTAACACGTCAATAGAATAAATG 57.285 29.630 0.00 0.00 0.00 2.32
3129 5076 6.151985 TCCCTGAAATAATTGCATTAACACGT 59.848 34.615 0.00 0.00 0.00 4.49
3337 5298 1.676006 ACCGCACTCTTCACAAAAAGG 59.324 47.619 0.00 0.00 0.00 3.11
3394 5360 4.388165 TGCAACACTTCAACACACATTTTG 59.612 37.500 0.00 0.00 0.00 2.44
3395 5361 4.564041 TGCAACACTTCAACACACATTTT 58.436 34.783 0.00 0.00 0.00 1.82
3508 5503 6.963049 ATTGAAATTTCAGAAATGAGCTGC 57.037 33.333 19.64 0.00 38.61 5.25
3550 5545 0.111266 GCGCAACTACGTCACACTTG 60.111 55.000 0.30 0.00 34.88 3.16
3562 5557 1.003118 TCTATGGTCTTTGGCGCAACT 59.997 47.619 10.83 0.00 0.00 3.16
3889 5899 6.252599 ACCTTTGGATGCATACTCTATGAA 57.747 37.500 11.02 0.00 38.45 2.57
4000 6015 5.634118 AGTCCAAGATTCAAAAGGTGATGA 58.366 37.500 0.00 0.00 35.70 2.92
4146 6162 0.251634 TATGTCGCAGCCATCCAACA 59.748 50.000 0.00 0.00 0.00 3.33
4156 6172 8.466086 ACATGTGTATTGTATATATGTCGCAG 57.534 34.615 0.00 0.00 28.37 5.18
4495 6516 5.766670 CCTATGTTGCATTGTATCCACTCAT 59.233 40.000 0.00 0.00 0.00 2.90
4577 6598 3.067106 CACAAGTGCACGATAACCTCTT 58.933 45.455 12.01 0.00 0.00 2.85
4656 6698 5.107065 ACTGCGCTCACAAGTAGTTTTAATC 60.107 40.000 9.73 0.00 0.00 1.75
5262 8842 2.092212 TGATGGATGCTTTTCTCTCCCC 60.092 50.000 0.00 0.00 0.00 4.81
5299 8879 8.843262 CCATTTAATTCACATTCAGAGCTGATA 58.157 33.333 0.37 0.00 39.64 2.15
5304 8884 5.045872 GCCCATTTAATTCACATTCAGAGC 58.954 41.667 0.00 0.00 0.00 4.09
5307 8887 5.247507 TCGCCCATTTAATTCACATTCAG 57.752 39.130 0.00 0.00 0.00 3.02
5369 8949 0.599060 TGTTGTCTGGACGTATGCGA 59.401 50.000 11.07 0.00 42.00 5.10
5399 8979 0.672091 TGCGTTAGATGGCTTTCGCA 60.672 50.000 5.97 5.97 45.27 5.10
5403 8983 1.279271 AGACCTGCGTTAGATGGCTTT 59.721 47.619 0.00 0.00 0.00 3.51
5554 9136 3.262151 GGCTAGATGGGGAGAACCTTATC 59.738 52.174 0.00 0.00 40.03 1.75
5716 9301 5.641155 TGTAGATCGGAAGGATCCAATCTA 58.359 41.667 15.82 13.86 45.76 1.98
5748 9335 1.500108 AACAACAAACGTCGCCGATA 58.500 45.000 0.00 0.00 37.88 2.92
5756 9343 4.477780 CAACACACCTAAACAACAAACGT 58.522 39.130 0.00 0.00 0.00 3.99
5759 9347 4.082136 GGACCAACACACCTAAACAACAAA 60.082 41.667 0.00 0.00 0.00 2.83
5763 9351 3.655615 AGGACCAACACACCTAAACAA 57.344 42.857 0.00 0.00 31.78 2.83
5819 9410 2.034179 AGCCGAGCAAACCTTTTTGTAC 59.966 45.455 0.00 0.00 43.62 2.90
5825 9416 1.966451 CGGAGCCGAGCAAACCTTT 60.966 57.895 2.00 0.00 42.83 3.11
5888 9762 2.233922 ACCTAGCAACGACTACAAGCAT 59.766 45.455 0.00 0.00 0.00 3.79
5902 9776 2.375345 GCCCTAAGCCCACCTAGCA 61.375 63.158 0.00 0.00 34.35 3.49
5912 9786 4.625607 AAGTACATCCATAGCCCTAAGC 57.374 45.455 0.00 0.00 44.25 3.09
5915 9789 7.685849 AGTAAAAAGTACATCCATAGCCCTA 57.314 36.000 0.00 0.00 0.00 3.53
5916 9790 6.576778 AGTAAAAAGTACATCCATAGCCCT 57.423 37.500 0.00 0.00 0.00 5.19
6024 9903 2.026262 TGCCTGTAGGGAGGTTTCAATC 60.026 50.000 0.00 0.00 37.23 2.67
6039 9919 7.000472 AGAATATACTAATGCATGTTGCCTGT 59.000 34.615 0.00 0.00 44.23 4.00


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.