AutoCloner

Multiple sequence alignment - TraesCS4B01G060900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS4B01G060900	chr4B	100.000	3501	0	0	1	3501	52864542	52868042	0.000000e+00	6466.0
1	TraesCS4B01G060900	chr4B	98.433	2425	30	7	1	2422	53074822	53072403	0.000000e+00	4261.0
2	TraesCS4B01G060900	chr4B	95.624	617	27	0	2885	3501	53071903	53071287	0.000000e+00	990.0
3	TraesCS4B01G060900	chr4B	96.137	466	12	3	2421	2885	53072321	53071861	0.000000e+00	756.0
4	TraesCS4B01G060900	chr4B	86.875	160	15	5	3342	3498	651976906	651977062	1.290000e-39	174.0
5	TraesCS4B01G060900	chr3B	80.639	971	160	18	1370	2320	10291176	10290214	0.000000e+00	726.0
6	TraesCS4B01G060900	chr3B	95.506	267	10	2	1	266	273555512	273555777	3.230000e-115	425.0
7	TraesCS4B01G060900	chr7A	97.710	262	6	0	1	262	149500419	149500158	5.330000e-123	451.0
8	TraesCS4B01G060900	chr5A	96.958	263	8	0	1	263	7540676	7540938	3.210000e-120	442.0
9	TraesCS4B01G060900	chr5A	92.857	56	4	0	2921	2976	680608734	680608789	8.050000e-12	82.4
10	TraesCS4B01G060900	chr7B	95.911	269	11	0	1	269	441433340	441433072	1.490000e-118	436.0
11	TraesCS4B01G060900	chr7B	88.000	50	6	0	2927	2976	535629394	535629345	3.770000e-05	60.2
12	TraesCS4B01G060900	chr6A	96.565	262	9	0	1	262	428844481	428844742	5.370000e-118	435.0
13	TraesCS4B01G060900	chr6A	95.094	265	13	0	1	265	209657253	209656989	5.400000e-113	418.0
14	TraesCS4B01G060900	chr3A	96.198	263	10	0	1	263	1586090	1586352	6.940000e-117	431.0
15	TraesCS4B01G060900	chr3A	80.422	521	72	18	1813	2317	12404949	12405455	1.530000e-98	370.0
16	TraesCS4B01G060900	chr2A	95.131	267	12	1	1	266	454875516	454875782	1.500000e-113	420.0
17	TraesCS4B01G060900	chr7D	86.792	159	17	3	3345	3501	26540161	26540317	1.290000e-39	174.0
18	TraesCS4B01G060900	chr5B	86.145	166	17	5	3336	3498	607118319	607118481	1.290000e-39	174.0
19	TraesCS4B01G060900	chr5B	80.851	235	28	12	2543	2771	317297199	317297422	6.010000e-38	169.0
20	TraesCS4B01G060900	chr5B	85.542	166	18	5	3336	3498	606990116	606990278	6.010000e-38	169.0
21	TraesCS4B01G060900	chr5B	85.542	166	18	5	3336	3498	607063148	607063310	6.010000e-38	169.0
22	TraesCS4B01G060900	chr5B	85.542	166	18	5	3336	3498	607139924	607140086	6.010000e-38	169.0
23	TraesCS4B01G060900	chr5B	100.000	29	0	0	2950	2978	255666391	255666419	2.000000e-03	54.7
24	TraesCS4B01G060900	chr6D	85.350	157	19	3	3346	3500	464536539	464536693	3.620000e-35	159.0
25	TraesCS4B01G060900	chr2D	87.075	147	11	6	3359	3501	154109744	154109602	3.620000e-35	159.0
26	TraesCS4B01G060900	chr3D	86.813	91	8	3	1372	1461	8513486	8513399	8.000000e-17	99.0
27	TraesCS4B01G060900	chr4A	87.097	62	6	2	2921	2981	734244300	734244360	6.270000e-08	69.4
28	TraesCS4B01G060900	chr1B	80.769	78	13	2	2899	2976	298834506	298834581	3.770000e-05	60.2

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS4B01G060900	chr4B	52864542	52868042	3500	False	6466.000000	6466	100.000000	1	3501	1	chr4B.!!$F1	3500
1	TraesCS4B01G060900	chr4B	53071287	53074822	3535	True	2002.333333	4261	96.731333	1	3501	3	chr4B.!!$R1	3500
2	TraesCS4B01G060900	chr3B	10290214	10291176	962	True	726.000000	726	80.639000	1370	2320	1	chr3B.!!$R1	950
3	TraesCS4B01G060900	chr3A	12404949	12405455	506	False	370.000000	370	80.422000	1813	2317	1	chr3A.!!$F2	504

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
517	520	0.322277	ACATGGAGAGCAAGTGCCAG	60.322	55.0	0.00	0.0	43.38	4.85	F
1635	1639	0.605319	GTGGCAATTCCCGACTGTCA	60.605	55.0	8.73	0.0	0.00	3.58	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
2257	2273	6.662865	ACATGTCGAAGATGAAGATATCCT	57.337	37.5	11.65	0.0	40.67	3.24	R
2831	2934	0.385974	ATCGAAGCAAAACGCACAGC	60.386	50.0	0.00	0.0	46.13	4.40	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
95	96	4.880164	TCTAGAACCATAGGCTACAACCT	58.120	43.478	0.00	0.00	44.31	3.50
101	102	5.774102	ACCATAGGCTACAACCTTAGTTT	57.226	39.130	0.00	0.00	41.50	2.66
109	110	7.557724	AGGCTACAACCTTAGTTTCTAGAATC	58.442	38.462	5.89	5.69	36.28	2.52
161	162	1.153046	TATAGTTTGGGCTGGGCGC	60.153	57.895	0.00	0.00	41.94	6.53
237	238	2.032924	GGTTCAGTTCAGGTTTGGTTCG	59.967	50.000	0.00	0.00	0.00	3.95
262	263	2.681097	GCCCACCCACTCTCAGATTTAC	60.681	54.545	0.00	0.00	0.00	2.01
268	270	4.957327	ACCCACTCTCAGATTTACTCCTAC	59.043	45.833	0.00	0.00	0.00	3.18
321	324	0.806492	CTTTCTACGCCGCCTTCTCC	60.806	60.000	0.00	0.00	0.00	3.71
419	422	0.463116	CCTACGCCACCGCCTTATTT	60.463	55.000	0.00	0.00	38.22	1.40
512	515	3.118482	CCTGTGATACATGGAGAGCAAGT	60.118	47.826	0.00	0.00	0.00	3.16
517	520	0.322277	ACATGGAGAGCAAGTGCCAG	60.322	55.000	0.00	0.00	43.38	4.85
672	675	4.338710	TGGCCTTGTACGGTGGGC	62.339	66.667	3.32	15.06	45.24	5.36
879	883	1.369625	GCAGTCGGATCCGTTTTCAT	58.630	50.000	32.15	11.21	40.74	2.57
914	918	2.187946	CTGCCTGGTGTCCGGATC	59.812	66.667	7.81	3.98	29.82	3.36
915	919	2.284625	TGCCTGGTGTCCGGATCT	60.285	61.111	7.81	0.00	29.82	2.75
916	920	1.903877	CTGCCTGGTGTCCGGATCTT	61.904	60.000	7.81	0.00	29.82	2.40
1038	1042	7.199766	TCAATATATATGCACGCACATCGATA	58.800	34.615	0.00	0.00	41.67	2.92
1635	1639	0.605319	GTGGCAATTCCCGACTGTCA	60.605	55.000	8.73	0.00	0.00	3.58
2257	2273	4.202620	TGGGTCCTTTGATTATGTTGGTCA	60.203	41.667	0.00	0.00	0.00	4.02
2263	2279	7.721399	GTCCTTTGATTATGTTGGTCAGGATAT	59.279	37.037	0.00	0.00	0.00	1.63
2567	2669	5.692115	ATTAGGCCCCTTTTATTTTGGTG	57.308	39.130	0.00	0.00	0.00	4.17
2602	2704	6.874664	ACCAAAAGTTTTAACCAACGAAATGT	59.125	30.769	0.00	0.00	0.00	2.71
2619	2721	8.420374	ACGAAATGTAAACTATATGTCACAGG	57.580	34.615	0.00	0.00	0.00	4.00
2785	2887	6.581542	CGGAGGTAGTAGCGTATAATCTTTTG	59.418	42.308	0.00	0.00	0.00	2.44
2810	2913	5.299531	TGTTATGGGAAACGTTTTCATGACA	59.700	36.000	29.51	29.51	33.23	3.58
2814	2917	3.304458	GGGAAACGTTTTCATGACAGACC	60.304	47.826	20.63	10.09	0.00	3.85
2831	2934	3.430862	CGGTTGGTCACATGCGGG	61.431	66.667	0.00	0.00	0.00	6.13
2849	2952	1.010125	GCTGTGCGTTTTGCTTCGA	60.010	52.632	0.00	0.00	46.63	3.71
2850	2953	0.385974	GCTGTGCGTTTTGCTTCGAT	60.386	50.000	0.00	0.00	46.63	3.59
2851	2954	1.595609	CTGTGCGTTTTGCTTCGATC	58.404	50.000	0.00	0.00	46.63	3.69
2889	2992	8.447787	TTTATTTATCGCTCAAAGTCTTTTGC	57.552	30.769	0.00	2.85	42.71	3.68
2890	2993	5.689383	TTTATCGCTCAAAGTCTTTTGCT	57.311	34.783	14.45	4.01	42.71	3.91
2891	2994	5.689383	TTATCGCTCAAAGTCTTTTGCTT	57.311	34.783	14.45	7.53	42.71	3.91
2892	2995	3.609103	TCGCTCAAAGTCTTTTGCTTC	57.391	42.857	14.45	0.00	42.71	3.86
2893	2996	2.032894	TCGCTCAAAGTCTTTTGCTTCG	60.033	45.455	14.45	7.00	42.71	3.79
2894	2997	2.032894	CGCTCAAAGTCTTTTGCTTCGA	60.033	45.455	14.45	0.00	42.71	3.71
2895	2998	3.364366	CGCTCAAAGTCTTTTGCTTCGAT	60.364	43.478	14.45	0.00	42.71	3.59
2896	2999	4.154717	GCTCAAAGTCTTTTGCTTCGATC	58.845	43.478	10.99	0.00	42.71	3.69
2897	3000	4.319766	GCTCAAAGTCTTTTGCTTCGATCA	60.320	41.667	10.99	0.00	42.71	2.92
2898	3001	5.618640	GCTCAAAGTCTTTTGCTTCGATCAT	60.619	40.000	10.99	0.00	42.71	2.45
2899	3002	6.317789	TCAAAGTCTTTTGCTTCGATCATT	57.682	33.333	0.00	0.00	42.71	2.57
2900	3003	6.144854	TCAAAGTCTTTTGCTTCGATCATTG	58.855	36.000	0.00	0.00	42.71	2.82
2901	3004	5.695851	AAGTCTTTTGCTTCGATCATTGT	57.304	34.783	0.00	0.00	0.00	2.71
2902	3005	6.801539	AAGTCTTTTGCTTCGATCATTGTA	57.198	33.333	0.00	0.00	0.00	2.41
2903	3006	6.414408	AGTCTTTTGCTTCGATCATTGTAG	57.586	37.500	0.00	0.00	0.00	2.74
2904	3007	5.934625	AGTCTTTTGCTTCGATCATTGTAGT	59.065	36.000	0.00	0.00	0.00	2.73
2905	3008	6.428159	AGTCTTTTGCTTCGATCATTGTAGTT	59.572	34.615	0.00	0.00	0.00	2.24
2906	3009	7.041098	AGTCTTTTGCTTCGATCATTGTAGTTT	60.041	33.333	0.00	0.00	0.00	2.66
2907	3010	7.591426	GTCTTTTGCTTCGATCATTGTAGTTTT	59.409	33.333	0.00	0.00	0.00	2.43
2908	3011	8.134895	TCTTTTGCTTCGATCATTGTAGTTTTT	58.865	29.630	0.00	0.00	0.00	1.94
2909	3012	9.393249	CTTTTGCTTCGATCATTGTAGTTTTTA	57.607	29.630	0.00	0.00	0.00	1.52
2910	3013	9.906660	TTTTGCTTCGATCATTGTAGTTTTTAT	57.093	25.926	0.00	0.00	0.00	1.40
2911	3014	9.906660	TTTGCTTCGATCATTGTAGTTTTTATT	57.093	25.926	0.00	0.00	0.00	1.40
2912	3015	9.906660	TTGCTTCGATCATTGTAGTTTTTATTT	57.093	25.926	0.00	0.00	0.00	1.40
2917	3020	9.858247	TCGATCATTGTAGTTTTTATTTATCGC	57.142	29.630	0.00	0.00	33.34	4.58
2918	3021	9.864034	CGATCATTGTAGTTTTTATTTATCGCT	57.136	29.630	0.00	0.00	0.00	4.93
2929	3032	8.795341	GTTTTTATTTATCGCTTAAAGTCTGGC	58.205	33.333	0.00	0.00	33.40	4.85
2947	3050	1.135112	GGCCCAAAATACAAAGGAGCG	60.135	52.381	0.00	0.00	0.00	5.03
2956	3059	4.632538	ATACAAAGGAGCGCAATAAACC	57.367	40.909	11.47	2.82	0.00	3.27
2995	3098	9.472361	GTAGCATATAGTCTTTTTCGTTATGGA	57.528	33.333	0.00	0.00	0.00	3.41
3024	3127	1.302752	GACAGGCCAGTCACATGCA	60.303	57.895	22.41	0.00	38.40	3.96
3090	3193	5.917541	TTTATCGTCTTCTTCCACAACAC	57.082	39.130	0.00	0.00	0.00	3.32
3107	3210	4.878397	ACAACACATCTTAGCCTTATCTGC	59.122	41.667	0.00	0.00	0.00	4.26
3146	3249	2.511600	GGTCCGTCATGGCTTCCG	60.512	66.667	0.00	0.00	37.80	4.30
3229	3332	1.273098	TGACCTCTTCCTCCCACCTAC	60.273	57.143	0.00	0.00	0.00	3.18
3238	3341	3.265489	TCCTCCCACCTACCTCAAATTT	58.735	45.455	0.00	0.00	0.00	1.82
3260	3363	1.122632	TGTTGTTGTCCCCGCTCCTA	61.123	55.000	0.00	0.00	0.00	2.94
3275	3378	1.677633	CCTAACAACCAAGGGCGGG	60.678	63.158	0.00	0.00	0.00	6.13
3482	3585	8.865590	TCGTATCGAAAATATGAATTCTGTGA	57.134	30.769	7.05	0.00	31.06	3.58

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
95	96	8.370182	ACCAAACTAACCGATTCTAGAAACTAA	58.630	33.333	9.71	0.00	0.00	2.24
101	102	6.428771	CCAAAACCAAACTAACCGATTCTAGA	59.571	38.462	0.00	0.00	0.00	2.43
109	110	4.373348	TTCACCAAAACCAAACTAACCG	57.627	40.909	0.00	0.00	0.00	4.44
161	162	1.181786	ACCCACGTAATTGGCATTGG	58.818	50.000	0.00	0.00	35.00	3.16
209	210	1.507141	CCTGAACTGAACCCACGTGC	61.507	60.000	10.91	0.00	0.00	5.34
287	289	4.324022	CGTAGAAAGGGGTTGGAATTAGGT	60.324	45.833	0.00	0.00	0.00	3.08
517	520	5.187576	AGAAAGCTATGGCCAGATCTAGATC	59.812	44.000	22.92	22.92	39.73	2.75
672	675	6.100004	ACACGAAGTAACTTACATCATCAGG	58.900	40.000	1.79	0.00	41.61	3.86
914	918	1.615107	GCGGTCGACAACTCGGAAAG	61.615	60.000	18.91	0.00	40.58	2.62
915	919	1.662446	GCGGTCGACAACTCGGAAA	60.662	57.895	18.91	0.00	40.58	3.13
916	920	2.049802	GCGGTCGACAACTCGGAA	60.050	61.111	18.91	0.00	40.58	4.30
1038	1042	8.228206	TCTGGGTGAGAAACTATGTCTATAGAT	58.772	37.037	5.57	0.00	38.88	1.98
2257	2273	6.662865	ACATGTCGAAGATGAAGATATCCT	57.337	37.500	11.65	0.00	40.67	3.24
2263	2279	7.602265	TGTATGAAAACATGTCGAAGATGAAGA	59.398	33.333	11.65	0.00	40.67	2.87
2346	2365	7.683437	TTCATCATCCATCTAATGCTTCATC	57.317	36.000	0.00	0.00	0.00	2.92
2591	2693	8.661257	TGTGACATATAGTTTACATTTCGTTGG	58.339	33.333	0.00	0.00	0.00	3.77
2703	2805	7.321153	GCTAGACTTTGACCAACTCAACTATA	58.679	38.462	0.00	0.00	38.70	1.31
2704	2806	6.166982	GCTAGACTTTGACCAACTCAACTAT	58.833	40.000	0.00	0.00	38.70	2.12
2785	2887	5.627780	GTCATGAAAACGTTTCCCATAACAC	59.372	40.000	21.01	15.89	0.00	3.32
2792	2895	3.304458	GGTCTGTCATGAAAACGTTTCCC	60.304	47.826	15.01	9.96	0.00	3.97
2814	2917	3.430862	CCCGCATGTGACCAACCG	61.431	66.667	8.11	0.00	0.00	4.44
2831	2934	0.385974	ATCGAAGCAAAACGCACAGC	60.386	50.000	0.00	0.00	46.13	4.40
2885	2988	9.906660	AATAAAAACTACAATGATCGAAGCAAA	57.093	25.926	0.00	0.00	0.00	3.68
2886	2989	9.906660	AAATAAAAACTACAATGATCGAAGCAA	57.093	25.926	0.00	0.00	0.00	3.91
2891	2994	9.858247	GCGATAAATAAAAACTACAATGATCGA	57.142	29.630	0.00	0.00	34.69	3.59
2892	2995	9.864034	AGCGATAAATAAAAACTACAATGATCG	57.136	29.630	0.00	0.00	35.59	3.69
2903	3006	8.795341	GCCAGACTTTAAGCGATAAATAAAAAC	58.205	33.333	0.00	0.00	33.15	2.43
2904	3007	7.971722	GGCCAGACTTTAAGCGATAAATAAAAA	59.028	33.333	0.00	0.00	33.15	1.94
2905	3008	7.415877	GGGCCAGACTTTAAGCGATAAATAAAA	60.416	37.037	4.39	0.00	33.15	1.52
2906	3009	6.038936	GGGCCAGACTTTAAGCGATAAATAAA	59.961	38.462	4.39	0.00	33.15	1.40
2907	3010	5.529800	GGGCCAGACTTTAAGCGATAAATAA	59.470	40.000	4.39	0.00	33.15	1.40
2908	3011	5.061179	GGGCCAGACTTTAAGCGATAAATA	58.939	41.667	4.39	0.00	33.15	1.40
2909	3012	3.883489	GGGCCAGACTTTAAGCGATAAAT	59.117	43.478	4.39	0.00	33.15	1.40
2910	3013	3.275999	GGGCCAGACTTTAAGCGATAAA	58.724	45.455	4.39	0.00	32.62	1.40
2911	3014	2.237643	TGGGCCAGACTTTAAGCGATAA	59.762	45.455	0.00	0.00	0.00	1.75
2912	3015	1.834896	TGGGCCAGACTTTAAGCGATA	59.165	47.619	0.00	0.00	0.00	2.92
2913	3016	0.618458	TGGGCCAGACTTTAAGCGAT	59.382	50.000	0.00	0.00	0.00	4.58
2914	3017	0.398696	TTGGGCCAGACTTTAAGCGA	59.601	50.000	6.23	0.00	0.00	4.93
2915	3018	1.243902	TTTGGGCCAGACTTTAAGCG	58.756	50.000	6.23	0.00	0.00	4.68
2916	3019	3.961480	ATTTTGGGCCAGACTTTAAGC	57.039	42.857	6.23	0.00	0.00	3.09
2917	3020	5.975693	TGTATTTTGGGCCAGACTTTAAG	57.024	39.130	6.23	0.00	0.00	1.85
2918	3021	6.239458	CCTTTGTATTTTGGGCCAGACTTTAA	60.239	38.462	6.23	0.00	0.00	1.52
2919	3022	5.245075	CCTTTGTATTTTGGGCCAGACTTTA	59.755	40.000	6.23	0.00	0.00	1.85
2920	3023	4.040339	CCTTTGTATTTTGGGCCAGACTTT	59.960	41.667	6.23	0.00	0.00	2.66
2921	3024	3.578282	CCTTTGTATTTTGGGCCAGACTT	59.422	43.478	6.23	0.00	0.00	3.01
2922	3025	3.165071	CCTTTGTATTTTGGGCCAGACT	58.835	45.455	6.23	0.00	0.00	3.24
2923	3026	3.161866	TCCTTTGTATTTTGGGCCAGAC	58.838	45.455	6.23	4.66	0.00	3.51
2924	3027	3.430453	CTCCTTTGTATTTTGGGCCAGA	58.570	45.455	6.23	0.00	0.00	3.86
2925	3028	2.094026	GCTCCTTTGTATTTTGGGCCAG	60.094	50.000	6.23	0.00	0.00	4.85
2926	3029	1.899142	GCTCCTTTGTATTTTGGGCCA	59.101	47.619	0.00	0.00	0.00	5.36
2929	3032	1.543802	TGCGCTCCTTTGTATTTTGGG	59.456	47.619	9.73	0.00	0.00	4.12
2947	3050	1.093496	CCTCCGTCCGGGTTTATTGC	61.093	60.000	0.00	0.00	37.00	3.56
2956	3059	0.822532	ATGCTACTACCTCCGTCCGG	60.823	60.000	0.00	0.00	0.00	5.14
3033	3136	2.076100	TCAGCACGATCAAAGCGAAAT	58.924	42.857	0.00	0.00	0.00	2.17
3090	3193	3.307339	GGGGAGCAGATAAGGCTAAGATG	60.307	52.174	0.00	0.00	42.78	2.90
3107	3210	1.407979	GCAGCAAGAAATCATGGGGAG	59.592	52.381	0.00	0.00	0.00	4.30
3209	3312	1.089978	TAGGTGGGAGGAAGAGGTCA	58.910	55.000	0.00	0.00	0.00	4.02
3229	3332	4.990426	GGGACAACAACATGAAATTTGAGG	59.010	41.667	0.00	0.00	0.00	3.86
3238	3341	0.605319	GAGCGGGGACAACAACATGA	60.605	55.000	0.00	0.00	0.00	3.07
3260	3363	2.203437	GACCCGCCCTTGGTTGTT	60.203	61.111	0.00	0.00	35.85	2.83
3275	3378	4.772886	ATACCAATGACCTTAGGTGGAC	57.227	45.455	9.39	0.00	35.25	4.02
3373	3476	4.899502	ACTTGATCTCAGAAAACACGGAT	58.100	39.130	0.00	0.00	0.00	4.18
3376	3479	5.904080	GTCAAACTTGATCTCAGAAAACACG	59.096	40.000	0.00	0.00	39.73	4.49
3471	3574	8.192774	GGAGCAAAAATCATATCACAGAATTCA	58.807	33.333	8.44	0.00	0.00	2.57
3478	3581	4.898829	CGGGAGCAAAAATCATATCACA	57.101	40.909	0.00	0.00	0.00	3.58

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.