Multiple sequence alignment - TraesCS4B01G059500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G059500 chr4B 100.000 4058 0 0 1 4058 50732461 50728404 0.000000e+00 7494.0
1 TraesCS4B01G059500 chr4D 93.582 2649 108 35 507 3136 35118791 35121396 0.000000e+00 3893.0
2 TraesCS4B01G059500 chr4D 87.500 352 18 4 3468 3796 35121553 35121901 2.290000e-102 383.0
3 TraesCS4B01G059500 chr4D 87.241 290 12 11 3794 4058 35122217 35122506 1.420000e-79 307.0
4 TraesCS4B01G059500 chr4D 92.593 135 7 2 2 133 35066787 35066921 1.490000e-44 191.0
5 TraesCS4B01G059500 chr4A 94.486 925 34 8 657 1577 567495616 567494705 0.000000e+00 1410.0
6 TraesCS4B01G059500 chr4A 92.105 836 42 13 1644 2471 567494670 567493851 0.000000e+00 1157.0
7 TraesCS4B01G059500 chr4A 98.077 572 8 2 2490 3060 567493736 567493167 0.000000e+00 992.0
8 TraesCS4B01G059500 chr4A 87.116 683 45 10 3297 3951 567493141 567492474 0.000000e+00 734.0
9 TraesCS4B01G059500 chr4A 100.000 29 0 0 3090 3118 567493165 567493137 2.000000e-03 54.7
10 TraesCS4B01G059500 chr7B 87.838 74 5 4 489 560 198621986 198622057 2.600000e-12 84.2
11 TraesCS4B01G059500 chr7D 86.111 72 10 0 489 560 226703407 226703478 1.210000e-10 78.7
12 TraesCS4B01G059500 chr5B 81.579 76 14 0 485 560 440275852 440275927 3.390000e-06 63.9
13 TraesCS4B01G059500 chr2B 97.222 36 1 0 525 560 505812241 505812276 1.220000e-05 62.1
14 TraesCS4B01G059500 chr2A 100.000 28 0 0 488 515 2724828 2724855 7.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G059500 chr4B 50728404 50732461 4057 True 7494.000000 7494 100.0000 1 4058 1 chr4B.!!$R1 4057
1 TraesCS4B01G059500 chr4D 35118791 35122506 3715 False 1527.666667 3893 89.4410 507 4058 3 chr4D.!!$F2 3551
2 TraesCS4B01G059500 chr4A 567492474 567495616 3142 True 869.540000 1410 94.3568 657 3951 5 chr4A.!!$R1 3294

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
216 217 0.106769 TGAACACTGCCTCCTTTGCA 60.107 50.0 0.0 0.0 37.17 4.08 F
978 982 0.254178 AGGCACCATCAATCGAGCTT 59.746 50.0 0.0 0.0 0.00 3.74 F
1819 1838 0.463620 AGCTGGAGAAGAAGATCGCC 59.536 55.0 0.0 0.0 39.48 5.54 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1054 1061 0.035343 GGTAAGGTTGCTCTCCCACC 60.035 60.0 0.00 0.00 0.00 4.61 R
2474 2497 0.458370 TGGCGAGATCGATGTGTGTG 60.458 55.0 0.54 0.00 43.02 3.82 R
3448 3575 0.107066 TGTGCCCGCTTGATCATGAT 60.107 50.0 8.25 8.25 0.00 2.45 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 3.847037 GTCAAAGTCACGCGTAAAAGA 57.153 42.857 13.44 1.03 0.00 2.52
21 22 4.186241 GTCAAAGTCACGCGTAAAAGAA 57.814 40.909 13.44 0.00 0.00 2.52
22 23 4.201576 GTCAAAGTCACGCGTAAAAGAAG 58.798 43.478 13.44 0.00 0.00 2.85
23 24 2.943843 AAGTCACGCGTAAAAGAAGC 57.056 45.000 13.44 0.00 0.00 3.86
31 32 3.515071 GCGTAAAAGAAGCGAAAGTCA 57.485 42.857 0.00 0.00 0.00 3.41
32 33 3.868835 GCGTAAAAGAAGCGAAAGTCAA 58.131 40.909 0.00 0.00 0.00 3.18
33 34 3.658079 GCGTAAAAGAAGCGAAAGTCAAC 59.342 43.478 0.00 0.00 0.00 3.18
34 35 4.784079 GCGTAAAAGAAGCGAAAGTCAACA 60.784 41.667 0.00 0.00 0.00 3.33
35 36 5.440685 CGTAAAAGAAGCGAAAGTCAACAT 58.559 37.500 0.00 0.00 0.00 2.71
36 37 5.560378 CGTAAAAGAAGCGAAAGTCAACATC 59.440 40.000 0.00 0.00 0.00 3.06
37 38 5.757850 AAAAGAAGCGAAAGTCAACATCT 57.242 34.783 0.00 0.00 0.00 2.90
38 39 5.757850 AAAGAAGCGAAAGTCAACATCTT 57.242 34.783 0.00 0.00 0.00 2.40
39 40 6.861065 AAAGAAGCGAAAGTCAACATCTTA 57.139 33.333 0.00 0.00 0.00 2.10
40 41 7.440523 AAAGAAGCGAAAGTCAACATCTTAT 57.559 32.000 0.00 0.00 0.00 1.73
41 42 8.547967 AAAGAAGCGAAAGTCAACATCTTATA 57.452 30.769 0.00 0.00 0.00 0.98
42 43 8.547967 AAGAAGCGAAAGTCAACATCTTATAA 57.452 30.769 0.00 0.00 0.00 0.98
43 44 8.723942 AGAAGCGAAAGTCAACATCTTATAAT 57.276 30.769 0.00 0.00 0.00 1.28
44 45 9.167311 AGAAGCGAAAGTCAACATCTTATAATT 57.833 29.630 0.00 0.00 0.00 1.40
45 46 9.214953 GAAGCGAAAGTCAACATCTTATAATTG 57.785 33.333 0.00 0.00 0.00 2.32
46 47 7.189512 AGCGAAAGTCAACATCTTATAATTGC 58.810 34.615 0.00 0.00 0.00 3.56
47 48 6.966632 GCGAAAGTCAACATCTTATAATTGCA 59.033 34.615 0.00 0.00 0.00 4.08
48 49 7.484641 GCGAAAGTCAACATCTTATAATTGCAA 59.515 33.333 0.00 0.00 0.00 4.08
49 50 9.340695 CGAAAGTCAACATCTTATAATTGCAAA 57.659 29.630 1.71 0.00 0.00 3.68
51 52 9.979578 AAAGTCAACATCTTATAATTGCAAACA 57.020 25.926 1.71 0.00 0.00 2.83
52 53 9.979578 AAGTCAACATCTTATAATTGCAAACAA 57.020 25.926 1.71 0.00 40.87 2.83
53 54 9.979578 AGTCAACATCTTATAATTGCAAACAAA 57.020 25.926 1.71 0.00 39.77 2.83
57 58 9.995003 AACATCTTATAATTGCAAACAAAAGGA 57.005 25.926 1.71 0.00 39.77 3.36
58 59 9.643693 ACATCTTATAATTGCAAACAAAAGGAG 57.356 29.630 1.71 5.01 39.77 3.69
59 60 9.643693 CATCTTATAATTGCAAACAAAAGGAGT 57.356 29.630 1.71 0.00 39.77 3.85
70 71 9.474920 TGCAAACAAAAGGAGTATATTTTCTTG 57.525 29.630 0.00 0.00 0.00 3.02
71 72 8.925700 GCAAACAAAAGGAGTATATTTTCTTGG 58.074 33.333 0.00 0.00 0.00 3.61
74 75 9.588096 AACAAAAGGAGTATATTTTCTTGGACT 57.412 29.630 0.00 0.00 0.00 3.85
75 76 9.588096 ACAAAAGGAGTATATTTTCTTGGACTT 57.412 29.630 0.00 0.00 0.00 3.01
76 77 9.846248 CAAAAGGAGTATATTTTCTTGGACTTG 57.154 33.333 0.00 0.00 0.00 3.16
77 78 9.807921 AAAAGGAGTATATTTTCTTGGACTTGA 57.192 29.630 0.00 0.00 0.00 3.02
78 79 9.807921 AAAGGAGTATATTTTCTTGGACTTGAA 57.192 29.630 0.00 0.00 0.00 2.69
79 80 9.807921 AAGGAGTATATTTTCTTGGACTTGAAA 57.192 29.630 0.00 0.00 0.00 2.69
80 81 9.807921 AGGAGTATATTTTCTTGGACTTGAAAA 57.192 29.630 0.00 0.00 43.40 2.29
81 82 9.841880 GGAGTATATTTTCTTGGACTTGAAAAC 57.158 33.333 0.00 0.00 42.49 2.43
88 89 8.870160 TTTTCTTGGACTTGAAAACATACATG 57.130 30.769 0.00 0.00 37.28 3.21
89 90 7.581213 TTCTTGGACTTGAAAACATACATGT 57.419 32.000 2.69 2.69 44.20 3.21
105 106 8.425577 ACATACATGTTCAGTTGTATAAGCTC 57.574 34.615 2.30 0.00 37.90 4.09
106 107 8.260818 ACATACATGTTCAGTTGTATAAGCTCT 58.739 33.333 2.30 0.00 37.90 4.09
107 108 6.974932 ACATGTTCAGTTGTATAAGCTCTG 57.025 37.500 0.00 0.00 0.00 3.35
108 109 5.352569 ACATGTTCAGTTGTATAAGCTCTGC 59.647 40.000 0.00 0.00 0.00 4.26
109 110 4.893608 TGTTCAGTTGTATAAGCTCTGCA 58.106 39.130 0.00 0.00 0.00 4.41
110 111 5.304778 TGTTCAGTTGTATAAGCTCTGCAA 58.695 37.500 0.00 0.00 0.00 4.08
111 112 5.762711 TGTTCAGTTGTATAAGCTCTGCAAA 59.237 36.000 2.13 0.00 0.00 3.68
112 113 6.430925 TGTTCAGTTGTATAAGCTCTGCAAAT 59.569 34.615 2.13 0.00 0.00 2.32
113 114 6.668541 TCAGTTGTATAAGCTCTGCAAATC 57.331 37.500 2.13 0.00 0.00 2.17
114 115 5.586243 TCAGTTGTATAAGCTCTGCAAATCC 59.414 40.000 2.13 0.00 0.00 3.01
115 116 5.587844 CAGTTGTATAAGCTCTGCAAATCCT 59.412 40.000 2.13 0.00 0.00 3.24
116 117 6.763135 CAGTTGTATAAGCTCTGCAAATCCTA 59.237 38.462 2.13 0.00 0.00 2.94
117 118 7.443575 CAGTTGTATAAGCTCTGCAAATCCTAT 59.556 37.037 2.13 0.00 0.00 2.57
118 119 8.651389 AGTTGTATAAGCTCTGCAAATCCTATA 58.349 33.333 2.13 0.00 0.00 1.31
119 120 9.442047 GTTGTATAAGCTCTGCAAATCCTATAT 57.558 33.333 2.13 0.00 0.00 0.86
121 122 9.658799 TGTATAAGCTCTGCAAATCCTATATTC 57.341 33.333 0.00 0.00 0.00 1.75
122 123 9.883142 GTATAAGCTCTGCAAATCCTATATTCT 57.117 33.333 0.00 0.00 0.00 2.40
124 125 6.430962 AGCTCTGCAAATCCTATATTCTCA 57.569 37.500 0.00 0.00 0.00 3.27
125 126 7.018487 AGCTCTGCAAATCCTATATTCTCAT 57.982 36.000 0.00 0.00 0.00 2.90
126 127 6.879993 AGCTCTGCAAATCCTATATTCTCATG 59.120 38.462 0.00 0.00 0.00 3.07
127 128 6.654161 GCTCTGCAAATCCTATATTCTCATGT 59.346 38.462 0.00 0.00 0.00 3.21
128 129 7.821359 GCTCTGCAAATCCTATATTCTCATGTA 59.179 37.037 0.00 0.00 0.00 2.29
129 130 9.887629 CTCTGCAAATCCTATATTCTCATGTAT 57.112 33.333 0.00 0.00 0.00 2.29
130 131 9.662947 TCTGCAAATCCTATATTCTCATGTATG 57.337 33.333 0.00 0.00 0.00 2.39
131 132 9.445878 CTGCAAATCCTATATTCTCATGTATGT 57.554 33.333 0.00 0.00 0.00 2.29
144 145 8.803201 TTCTCATGTATGTAGATTTTAGCGAG 57.197 34.615 0.00 0.00 0.00 5.03
145 146 6.863645 TCTCATGTATGTAGATTTTAGCGAGC 59.136 38.462 0.00 0.00 0.00 5.03
146 147 5.926542 TCATGTATGTAGATTTTAGCGAGCC 59.073 40.000 0.00 0.00 0.00 4.70
147 148 5.270893 TGTATGTAGATTTTAGCGAGCCA 57.729 39.130 0.00 0.00 0.00 4.75
148 149 5.853936 TGTATGTAGATTTTAGCGAGCCAT 58.146 37.500 0.00 0.00 0.00 4.40
149 150 5.696270 TGTATGTAGATTTTAGCGAGCCATG 59.304 40.000 0.00 0.00 0.00 3.66
150 151 4.137116 TGTAGATTTTAGCGAGCCATGT 57.863 40.909 0.00 0.00 0.00 3.21
151 152 4.513442 TGTAGATTTTAGCGAGCCATGTT 58.487 39.130 0.00 0.00 0.00 2.71
152 153 5.666462 TGTAGATTTTAGCGAGCCATGTTA 58.334 37.500 0.00 0.00 0.00 2.41
153 154 5.522460 TGTAGATTTTAGCGAGCCATGTTAC 59.478 40.000 0.00 0.00 0.00 2.50
154 155 4.770795 AGATTTTAGCGAGCCATGTTACT 58.229 39.130 0.00 0.00 0.00 2.24
155 156 4.572389 AGATTTTAGCGAGCCATGTTACTG 59.428 41.667 0.00 0.00 0.00 2.74
156 157 3.328382 TTTAGCGAGCCATGTTACTGT 57.672 42.857 0.00 0.00 0.00 3.55
157 158 4.459390 TTTAGCGAGCCATGTTACTGTA 57.541 40.909 0.00 0.00 0.00 2.74
158 159 2.295253 AGCGAGCCATGTTACTGTAC 57.705 50.000 0.00 0.00 0.00 2.90
159 160 1.548719 AGCGAGCCATGTTACTGTACA 59.451 47.619 0.00 0.00 0.00 2.90
160 161 1.659098 GCGAGCCATGTTACTGTACAC 59.341 52.381 0.00 0.00 0.00 2.90
161 162 2.674177 GCGAGCCATGTTACTGTACACT 60.674 50.000 0.00 0.00 0.00 3.55
162 163 3.179830 CGAGCCATGTTACTGTACACTC 58.820 50.000 0.00 0.00 0.00 3.51
163 164 3.522553 GAGCCATGTTACTGTACACTCC 58.477 50.000 0.00 0.00 0.00 3.85
164 165 2.236395 AGCCATGTTACTGTACACTCCC 59.764 50.000 0.00 0.00 0.00 4.30
165 166 2.236395 GCCATGTTACTGTACACTCCCT 59.764 50.000 0.00 0.00 0.00 4.20
166 167 3.679083 GCCATGTTACTGTACACTCCCTC 60.679 52.174 0.00 0.00 0.00 4.30
167 168 3.513912 CCATGTTACTGTACACTCCCTCA 59.486 47.826 0.00 0.00 0.00 3.86
168 169 4.162320 CCATGTTACTGTACACTCCCTCAT 59.838 45.833 0.00 0.00 0.00 2.90
169 170 4.801330 TGTTACTGTACACTCCCTCATG 57.199 45.455 0.00 0.00 0.00 3.07
170 171 3.056107 TGTTACTGTACACTCCCTCATGC 60.056 47.826 0.00 0.00 0.00 4.06
171 172 1.644509 ACTGTACACTCCCTCATGCA 58.355 50.000 0.00 0.00 0.00 3.96
172 173 2.191400 ACTGTACACTCCCTCATGCAT 58.809 47.619 0.00 0.00 0.00 3.96
173 174 3.374764 ACTGTACACTCCCTCATGCATA 58.625 45.455 0.00 0.00 0.00 3.14
174 175 3.969976 ACTGTACACTCCCTCATGCATAT 59.030 43.478 0.00 0.00 0.00 1.78
175 176 5.147767 ACTGTACACTCCCTCATGCATATA 58.852 41.667 0.00 0.00 0.00 0.86
176 177 5.782331 ACTGTACACTCCCTCATGCATATAT 59.218 40.000 0.00 0.00 0.00 0.86
177 178 6.954102 ACTGTACACTCCCTCATGCATATATA 59.046 38.462 0.00 0.00 0.00 0.86
178 179 7.454694 ACTGTACACTCCCTCATGCATATATAA 59.545 37.037 0.00 0.00 0.00 0.98
179 180 8.201242 TGTACACTCCCTCATGCATATATAAA 57.799 34.615 0.00 0.00 0.00 1.40
180 181 8.094548 TGTACACTCCCTCATGCATATATAAAC 58.905 37.037 0.00 0.00 0.00 2.01
181 182 7.078249 ACACTCCCTCATGCATATATAAACA 57.922 36.000 0.00 0.00 0.00 2.83
182 183 7.517320 ACACTCCCTCATGCATATATAAACAA 58.483 34.615 0.00 0.00 0.00 2.83
183 184 8.166061 ACACTCCCTCATGCATATATAAACAAT 58.834 33.333 0.00 0.00 0.00 2.71
184 185 9.017509 CACTCCCTCATGCATATATAAACAATT 57.982 33.333 0.00 0.00 0.00 2.32
210 211 2.778299 TGTTACATGAACACTGCCTCC 58.222 47.619 0.00 0.00 43.30 4.30
211 212 2.371841 TGTTACATGAACACTGCCTCCT 59.628 45.455 0.00 0.00 43.30 3.69
212 213 3.181445 TGTTACATGAACACTGCCTCCTT 60.181 43.478 0.00 0.00 43.30 3.36
213 214 2.664402 ACATGAACACTGCCTCCTTT 57.336 45.000 0.00 0.00 0.00 3.11
214 215 2.233271 ACATGAACACTGCCTCCTTTG 58.767 47.619 0.00 0.00 0.00 2.77
215 216 1.068055 CATGAACACTGCCTCCTTTGC 60.068 52.381 0.00 0.00 0.00 3.68
216 217 0.106769 TGAACACTGCCTCCTTTGCA 60.107 50.000 0.00 0.00 37.17 4.08
217 218 1.032014 GAACACTGCCTCCTTTGCAA 58.968 50.000 0.00 0.00 38.46 4.08
218 219 1.408702 GAACACTGCCTCCTTTGCAAA 59.591 47.619 12.14 12.14 38.46 3.68
219 220 1.484038 ACACTGCCTCCTTTGCAAAA 58.516 45.000 13.84 0.00 38.46 2.44
220 221 2.041701 ACACTGCCTCCTTTGCAAAAT 58.958 42.857 13.84 0.00 38.46 1.82
221 222 3.230134 ACACTGCCTCCTTTGCAAAATA 58.770 40.909 13.84 3.21 38.46 1.40
222 223 3.005791 ACACTGCCTCCTTTGCAAAATAC 59.994 43.478 13.84 2.22 38.46 1.89
223 224 3.256631 CACTGCCTCCTTTGCAAAATACT 59.743 43.478 13.84 0.00 38.46 2.12
224 225 3.897505 ACTGCCTCCTTTGCAAAATACTT 59.102 39.130 13.84 0.00 38.46 2.24
225 226 5.048083 CACTGCCTCCTTTGCAAAATACTTA 60.048 40.000 13.84 0.00 38.46 2.24
226 227 5.538433 ACTGCCTCCTTTGCAAAATACTTAA 59.462 36.000 13.84 0.00 38.46 1.85
227 228 6.041523 ACTGCCTCCTTTGCAAAATACTTAAA 59.958 34.615 13.84 0.00 38.46 1.52
228 229 6.454795 TGCCTCCTTTGCAAAATACTTAAAG 58.545 36.000 13.84 0.00 35.40 1.85
229 230 6.041523 TGCCTCCTTTGCAAAATACTTAAAGT 59.958 34.615 13.84 0.00 35.40 2.66
230 231 6.929049 GCCTCCTTTGCAAAATACTTAAAGTT 59.071 34.615 13.84 0.00 0.00 2.66
231 232 8.085909 GCCTCCTTTGCAAAATACTTAAAGTTA 58.914 33.333 13.84 0.00 0.00 2.24
251 252 8.421673 AAGTTATAGTTCGTCCTAAATCAAGC 57.578 34.615 0.00 0.00 0.00 4.01
252 253 7.553334 AGTTATAGTTCGTCCTAAATCAAGCA 58.447 34.615 0.00 0.00 0.00 3.91
253 254 8.204836 AGTTATAGTTCGTCCTAAATCAAGCAT 58.795 33.333 0.00 0.00 0.00 3.79
254 255 8.488764 GTTATAGTTCGTCCTAAATCAAGCATC 58.511 37.037 0.00 0.00 0.00 3.91
255 256 5.091261 AGTTCGTCCTAAATCAAGCATCT 57.909 39.130 0.00 0.00 0.00 2.90
256 257 5.491982 AGTTCGTCCTAAATCAAGCATCTT 58.508 37.500 0.00 0.00 0.00 2.40
257 258 5.940470 AGTTCGTCCTAAATCAAGCATCTTT 59.060 36.000 0.00 0.00 0.00 2.52
258 259 7.103641 AGTTCGTCCTAAATCAAGCATCTTTA 58.896 34.615 0.00 0.00 0.00 1.85
259 260 7.606456 AGTTCGTCCTAAATCAAGCATCTTTAA 59.394 33.333 0.00 0.00 0.00 1.52
260 261 7.915293 TCGTCCTAAATCAAGCATCTTTAAA 57.085 32.000 0.00 0.00 0.00 1.52
261 262 8.506168 TCGTCCTAAATCAAGCATCTTTAAAT 57.494 30.769 0.00 0.00 0.00 1.40
262 263 9.607988 TCGTCCTAAATCAAGCATCTTTAAATA 57.392 29.630 0.00 0.00 0.00 1.40
327 328 4.599047 AAAAATTCTCCGGCATGTCAAA 57.401 36.364 0.00 0.00 0.00 2.69
328 329 4.599047 AAAATTCTCCGGCATGTCAAAA 57.401 36.364 0.00 0.00 0.00 2.44
329 330 4.806640 AAATTCTCCGGCATGTCAAAAT 57.193 36.364 0.00 0.00 0.00 1.82
330 331 3.788333 ATTCTCCGGCATGTCAAAATG 57.212 42.857 0.00 0.00 0.00 2.32
331 332 2.488204 TCTCCGGCATGTCAAAATGA 57.512 45.000 0.00 0.00 0.00 2.57
332 333 3.003394 TCTCCGGCATGTCAAAATGAT 57.997 42.857 0.00 0.00 0.00 2.45
333 334 4.149511 TCTCCGGCATGTCAAAATGATA 57.850 40.909 0.00 0.00 0.00 2.15
334 335 4.129380 TCTCCGGCATGTCAAAATGATAG 58.871 43.478 0.00 0.00 0.00 2.08
335 336 2.618241 TCCGGCATGTCAAAATGATAGC 59.382 45.455 0.00 0.00 0.00 2.97
336 337 2.358582 CCGGCATGTCAAAATGATAGCA 59.641 45.455 0.00 0.00 0.00 3.49
337 338 3.181488 CCGGCATGTCAAAATGATAGCAA 60.181 43.478 0.00 0.00 0.00 3.91
338 339 4.422840 CGGCATGTCAAAATGATAGCAAA 58.577 39.130 0.00 0.00 0.00 3.68
339 340 4.266029 CGGCATGTCAAAATGATAGCAAAC 59.734 41.667 0.00 0.00 0.00 2.93
340 341 5.170021 GGCATGTCAAAATGATAGCAAACA 58.830 37.500 0.00 0.00 0.00 2.83
341 342 5.638657 GGCATGTCAAAATGATAGCAAACAA 59.361 36.000 0.00 0.00 0.00 2.83
342 343 6.314400 GGCATGTCAAAATGATAGCAAACAAT 59.686 34.615 0.00 0.00 0.00 2.71
343 344 7.148373 GGCATGTCAAAATGATAGCAAACAATT 60.148 33.333 0.00 0.00 0.00 2.32
344 345 8.231837 GCATGTCAAAATGATAGCAAACAATTT 58.768 29.630 0.00 0.00 0.00 1.82
345 346 9.749490 CATGTCAAAATGATAGCAAACAATTTC 57.251 29.630 0.00 0.00 0.00 2.17
346 347 9.715121 ATGTCAAAATGATAGCAAACAATTTCT 57.285 25.926 0.00 0.00 0.00 2.52
359 360 9.545105 AGCAAACAATTTCTAATGTCAAAATGA 57.455 25.926 0.00 0.00 0.00 2.57
374 375 6.104665 GTCAAAATGACTACTACTACACCCC 58.895 44.000 3.31 0.00 43.73 4.95
375 376 4.996788 AAATGACTACTACTACACCCCG 57.003 45.455 0.00 0.00 0.00 5.73
376 377 1.755179 TGACTACTACTACACCCCGC 58.245 55.000 0.00 0.00 0.00 6.13
377 378 1.004628 TGACTACTACTACACCCCGCA 59.995 52.381 0.00 0.00 0.00 5.69
378 379 2.094675 GACTACTACTACACCCCGCAA 58.905 52.381 0.00 0.00 0.00 4.85
379 380 2.493278 GACTACTACTACACCCCGCAAA 59.507 50.000 0.00 0.00 0.00 3.68
380 381 2.899256 ACTACTACTACACCCCGCAAAA 59.101 45.455 0.00 0.00 0.00 2.44
381 382 2.934886 ACTACTACACCCCGCAAAAA 57.065 45.000 0.00 0.00 0.00 1.94
442 443 9.391006 AGTACAACTTTAGTGTCTTTGATTTGA 57.609 29.630 0.00 0.00 0.00 2.69
465 466 9.754382 TTGATTAACTACAACTTTAGTCGAAGT 57.246 29.630 0.00 0.00 41.44 3.01
477 478 7.811653 ACTTTAGTCGAAGTTGTACTAGTACC 58.188 38.462 26.41 14.30 36.49 3.34
478 479 7.445402 ACTTTAGTCGAAGTTGTACTAGTACCA 59.555 37.037 26.41 15.65 36.49 3.25
479 480 7.928307 TTAGTCGAAGTTGTACTAGTACCAT 57.072 36.000 26.41 12.09 35.26 3.55
480 481 6.434018 AGTCGAAGTTGTACTAGTACCATC 57.566 41.667 26.41 17.90 35.26 3.51
481 482 5.942236 AGTCGAAGTTGTACTAGTACCATCA 59.058 40.000 26.41 8.50 35.26 3.07
482 483 6.602406 AGTCGAAGTTGTACTAGTACCATCAT 59.398 38.462 26.41 11.66 35.26 2.45
483 484 6.911511 GTCGAAGTTGTACTAGTACCATCATC 59.088 42.308 26.41 17.34 35.26 2.92
484 485 6.039047 TCGAAGTTGTACTAGTACCATCATCC 59.961 42.308 26.41 11.16 35.26 3.51
485 486 5.769484 AGTTGTACTAGTACCATCATCCG 57.231 43.478 26.41 0.00 35.26 4.18
486 487 4.583489 AGTTGTACTAGTACCATCATCCGG 59.417 45.833 26.41 0.00 35.26 5.14
487 488 4.442401 TGTACTAGTACCATCATCCGGA 57.558 45.455 26.41 6.61 35.26 5.14
488 489 4.795469 TGTACTAGTACCATCATCCGGAA 58.205 43.478 26.41 0.00 35.26 4.30
489 490 5.391256 TGTACTAGTACCATCATCCGGAAT 58.609 41.667 26.41 0.00 35.26 3.01
490 491 5.836898 TGTACTAGTACCATCATCCGGAATT 59.163 40.000 26.41 0.00 35.26 2.17
491 492 7.005902 TGTACTAGTACCATCATCCGGAATTA 58.994 38.462 26.41 0.00 35.26 1.40
492 493 6.591750 ACTAGTACCATCATCCGGAATTAG 57.408 41.667 9.01 2.99 0.00 1.73
493 494 6.075984 ACTAGTACCATCATCCGGAATTAGT 58.924 40.000 9.01 3.69 0.00 2.24
494 495 5.888982 AGTACCATCATCCGGAATTAGTT 57.111 39.130 9.01 0.00 0.00 2.24
495 496 5.611374 AGTACCATCATCCGGAATTAGTTG 58.389 41.667 9.01 0.00 0.00 3.16
496 497 4.503714 ACCATCATCCGGAATTAGTTGT 57.496 40.909 9.01 0.00 0.00 3.32
497 498 4.451900 ACCATCATCCGGAATTAGTTGTC 58.548 43.478 9.01 0.00 0.00 3.18
498 499 4.080582 ACCATCATCCGGAATTAGTTGTCA 60.081 41.667 9.01 0.00 0.00 3.58
499 500 4.273480 CCATCATCCGGAATTAGTTGTCAC 59.727 45.833 9.01 0.00 0.00 3.67
500 501 4.819105 TCATCCGGAATTAGTTGTCACT 57.181 40.909 9.01 0.00 36.99 3.41
501 502 4.503910 TCATCCGGAATTAGTTGTCACTG 58.496 43.478 9.01 0.00 34.06 3.66
502 503 4.221924 TCATCCGGAATTAGTTGTCACTGA 59.778 41.667 9.01 0.00 34.06 3.41
503 504 4.610605 TCCGGAATTAGTTGTCACTGAA 57.389 40.909 0.00 0.00 34.06 3.02
504 505 4.963373 TCCGGAATTAGTTGTCACTGAAA 58.037 39.130 0.00 0.00 34.06 2.69
505 506 5.556915 TCCGGAATTAGTTGTCACTGAAAT 58.443 37.500 0.00 0.00 34.06 2.17
506 507 5.411361 TCCGGAATTAGTTGTCACTGAAATG 59.589 40.000 0.00 0.00 34.06 2.32
507 508 5.391950 CCGGAATTAGTTGTCACTGAAATGG 60.392 44.000 0.00 0.00 34.06 3.16
508 509 5.411361 CGGAATTAGTTGTCACTGAAATGGA 59.589 40.000 0.00 0.00 34.06 3.41
509 510 6.094048 CGGAATTAGTTGTCACTGAAATGGAT 59.906 38.462 0.00 0.00 34.06 3.41
510 511 7.279981 CGGAATTAGTTGTCACTGAAATGGATA 59.720 37.037 0.00 0.00 34.06 2.59
511 512 9.125026 GGAATTAGTTGTCACTGAAATGGATAT 57.875 33.333 0.00 0.00 34.06 1.63
515 516 9.778741 TTAGTTGTCACTGAAATGGATATATCC 57.221 33.333 22.92 22.92 39.80 2.59
516 517 8.933653 TAGTTGTCACTGAAATGGATATATCCA 58.066 33.333 31.80 31.80 46.48 3.41
537 538 4.202192 CCAGATGTGCTTCAGTGCTAGATA 60.202 45.833 0.00 0.00 0.00 1.98
541 542 4.686972 TGTGCTTCAGTGCTAGATACATC 58.313 43.478 0.00 0.00 0.00 3.06
543 544 3.243535 TGCTTCAGTGCTAGATACATCCG 60.244 47.826 0.00 0.00 0.00 4.18
560 561 5.864986 ACATCCGTTTAAGCGACAAATAAG 58.135 37.500 13.69 0.00 0.00 1.73
563 564 4.090354 TCCGTTTAAGCGACAAATAAGACG 59.910 41.667 13.69 0.00 0.00 4.18
564 565 4.320491 CGTTTAAGCGACAAATAAGACGG 58.680 43.478 5.72 0.00 0.00 4.79
572 573 5.530171 AGCGACAAATAAGACGGAGATAGTA 59.470 40.000 0.00 0.00 0.00 1.82
573 574 5.624491 GCGACAAATAAGACGGAGATAGTAC 59.376 44.000 0.00 0.00 0.00 2.73
574 575 6.513066 GCGACAAATAAGACGGAGATAGTACT 60.513 42.308 0.00 0.00 0.00 2.73
575 576 7.307632 GCGACAAATAAGACGGAGATAGTACTA 60.308 40.741 4.77 4.77 0.00 1.82
576 577 8.554528 CGACAAATAAGACGGAGATAGTACTAA 58.445 37.037 6.70 0.00 0.00 2.24
586 587 7.416022 ACGGAGATAGTACTAAATCAAAGACG 58.584 38.462 6.70 8.64 0.00 4.18
624 625 9.614792 ATGGATGGAGTACTAGTTAAAATGTTC 57.385 33.333 0.00 0.00 0.00 3.18
643 644 2.242926 TCGAATTTGGCCCAAATGTGA 58.757 42.857 21.95 18.40 42.32 3.58
644 645 2.230992 TCGAATTTGGCCCAAATGTGAG 59.769 45.455 21.95 13.18 42.32 3.51
651 652 0.802494 GCCCAAATGTGAGTGTACGG 59.198 55.000 0.00 0.00 0.00 4.02
664 666 3.396560 AGTGTACGGAAAGCAAGTTACC 58.603 45.455 0.00 0.00 0.00 2.85
735 738 2.699954 CCGCCAAGTGTACATTTCTCT 58.300 47.619 0.00 0.00 0.00 3.10
851 855 4.161295 TCCCGGCGCATTCTCCAG 62.161 66.667 10.83 0.00 0.00 3.86
903 907 1.749063 CGAACCATTTTAAGCTCCCCC 59.251 52.381 0.00 0.00 0.00 5.40
971 975 3.612251 GCAGCAGGCACCATCAAT 58.388 55.556 0.00 0.00 43.97 2.57
973 977 1.725665 CAGCAGGCACCATCAATCG 59.274 57.895 0.00 0.00 0.00 3.34
978 982 0.254178 AGGCACCATCAATCGAGCTT 59.746 50.000 0.00 0.00 0.00 3.74
983 987 2.350804 CACCATCAATCGAGCTTCACAG 59.649 50.000 0.00 0.00 0.00 3.66
993 997 2.357881 CTTCACAGCAGCTCGCCA 60.358 61.111 0.00 0.00 44.04 5.69
1041 1048 1.324736 GCAACTATCGTGTGTAGCAGC 59.675 52.381 0.00 0.00 0.00 5.25
1042 1049 2.606108 CAACTATCGTGTGTAGCAGCA 58.394 47.619 0.00 0.00 0.00 4.41
1043 1050 3.190079 CAACTATCGTGTGTAGCAGCAT 58.810 45.455 0.00 0.00 0.00 3.79
1300 1310 2.359169 GGAGGTGATGGCGAGGACA 61.359 63.158 0.00 0.00 0.00 4.02
1608 1618 1.135139 ACGATCATCGCTTGTACTGCT 59.865 47.619 7.05 0.00 45.12 4.24
1610 1620 2.976509 CGATCATCGCTTGTACTGCTAG 59.023 50.000 0.00 0.00 31.14 3.42
1614 1624 2.363788 TCGCTTGTACTGCTAGTTGG 57.636 50.000 9.12 0.00 0.00 3.77
1615 1625 1.616865 TCGCTTGTACTGCTAGTTGGT 59.383 47.619 9.12 0.00 0.00 3.67
1620 1630 5.175859 GCTTGTACTGCTAGTTGGTATTCA 58.824 41.667 0.00 0.00 0.00 2.57
1639 1649 6.669125 ATTCACAGTTCAATCATGGGAAAA 57.331 33.333 0.00 0.00 39.62 2.29
1641 1651 6.669125 TCACAGTTCAATCATGGGAAAATT 57.331 33.333 0.00 0.00 0.00 1.82
1642 1652 7.065120 TCACAGTTCAATCATGGGAAAATTT 57.935 32.000 0.00 0.00 0.00 1.82
1643 1653 7.507829 TCACAGTTCAATCATGGGAAAATTTT 58.492 30.769 2.28 2.28 0.00 1.82
1644 1654 7.656948 TCACAGTTCAATCATGGGAAAATTTTC 59.343 33.333 20.51 20.51 36.46 2.29
1645 1655 6.646240 ACAGTTCAATCATGGGAAAATTTTCG 59.354 34.615 21.53 10.21 38.06 3.46
1660 1674 8.599774 GGAAAATTTTCGTGAAGATTTGTTGAA 58.400 29.630 21.53 0.00 35.92 2.69
1661 1675 9.965748 GAAAATTTTCGTGAAGATTTGTTGAAA 57.034 25.926 14.83 0.00 35.92 2.69
1671 1685 4.525912 GATTTGTTGAAATCTGGGTGCT 57.474 40.909 0.00 0.00 42.93 4.40
1800 1819 2.856039 ATCGAGGAGGTGAGGCCGAA 62.856 60.000 0.00 0.00 43.70 4.30
1819 1838 0.463620 AGCTGGAGAAGAAGATCGCC 59.536 55.000 0.00 0.00 39.48 5.54
1938 1957 2.401699 CTGCAGCTGGAGGTGACCAA 62.402 60.000 26.30 0.00 45.66 3.67
2107 2126 2.678580 TCCATCCTCGGCGTGTCA 60.679 61.111 6.85 0.00 0.00 3.58
2116 2135 1.154016 CGGCGTGTCAGAGGTACTG 60.154 63.158 0.00 0.00 46.97 2.74
2119 2138 1.009389 GCGTGTCAGAGGTACTGCAC 61.009 60.000 0.00 0.00 45.38 4.57
2136 2158 8.541384 GGTACTGCACCTGCTAATTAAGCTTTA 61.541 40.741 3.20 0.00 45.28 1.85
2152 2174 6.759497 AAGCTTTATCATTTCCGTTAAGCT 57.241 33.333 0.00 0.00 46.15 3.74
2153 2175 6.759497 AGCTTTATCATTTCCGTTAAGCTT 57.241 33.333 3.48 3.48 42.86 3.74
2154 2176 7.158099 AGCTTTATCATTTCCGTTAAGCTTT 57.842 32.000 3.20 0.00 42.86 3.51
2155 2177 7.602753 AGCTTTATCATTTCCGTTAAGCTTTT 58.397 30.769 3.20 0.00 42.86 2.27
2156 2178 7.755373 AGCTTTATCATTTCCGTTAAGCTTTTC 59.245 33.333 3.20 0.00 42.86 2.29
2157 2179 7.755373 GCTTTATCATTTCCGTTAAGCTTTTCT 59.245 33.333 3.20 0.00 35.04 2.52
2160 2182 5.219633 TCATTTCCGTTAAGCTTTTCTTGC 58.780 37.500 3.20 0.00 36.25 4.01
2161 2183 4.640789 TTTCCGTTAAGCTTTTCTTGCA 57.359 36.364 3.20 0.00 36.25 4.08
2162 2184 4.846779 TTCCGTTAAGCTTTTCTTGCAT 57.153 36.364 3.20 0.00 36.25 3.96
2163 2185 4.159377 TCCGTTAAGCTTTTCTTGCATG 57.841 40.909 3.20 0.00 36.25 4.06
2164 2186 3.568007 TCCGTTAAGCTTTTCTTGCATGT 59.432 39.130 3.20 0.00 36.25 3.21
2165 2187 4.757657 TCCGTTAAGCTTTTCTTGCATGTA 59.242 37.500 3.20 0.00 36.25 2.29
2166 2188 5.414454 TCCGTTAAGCTTTTCTTGCATGTAT 59.586 36.000 3.20 0.00 36.25 2.29
2167 2189 5.512788 CCGTTAAGCTTTTCTTGCATGTATG 59.487 40.000 3.20 0.00 36.25 2.39
2359 2382 1.447838 CCTGTTCGACATCCCCGTG 60.448 63.158 0.00 0.00 0.00 4.94
2469 2492 1.363744 CTGTAAGTAGCAGCAGCACC 58.636 55.000 3.17 0.00 45.49 5.01
2474 2497 2.032528 TAGCAGCAGCACCACCAC 59.967 61.111 3.17 0.00 45.49 4.16
2477 2500 2.516695 CAGCAGCACCACCACACA 60.517 61.111 0.00 0.00 0.00 3.72
2478 2501 2.516930 AGCAGCACCACCACACAC 60.517 61.111 0.00 0.00 0.00 3.82
2481 2504 1.748500 CAGCACCACCACACACACA 60.749 57.895 0.00 0.00 0.00 3.72
2482 2505 1.102809 CAGCACCACCACACACACAT 61.103 55.000 0.00 0.00 0.00 3.21
2484 2507 1.941072 CACCACCACACACACATCG 59.059 57.895 0.00 0.00 0.00 3.84
2485 2508 0.531753 CACCACCACACACACATCGA 60.532 55.000 0.00 0.00 0.00 3.59
2486 2509 0.396435 ACCACCACACACACATCGAT 59.604 50.000 0.00 0.00 0.00 3.59
3060 3182 2.136878 CAGGGGCGGCATCTAGACT 61.137 63.158 12.47 0.00 0.00 3.24
3061 3183 0.827925 CAGGGGCGGCATCTAGACTA 60.828 60.000 12.47 0.00 0.00 2.59
3063 3185 0.539901 GGGGCGGCATCTAGACTAGA 60.540 60.000 14.53 14.53 39.50 2.43
3064 3186 0.599060 GGGCGGCATCTAGACTAGAC 59.401 60.000 14.47 3.15 37.69 2.59
3065 3187 0.599060 GGCGGCATCTAGACTAGACC 59.401 60.000 14.47 11.05 37.69 3.85
3066 3188 1.611519 GCGGCATCTAGACTAGACCT 58.388 55.000 14.47 0.00 37.69 3.85
3069 3191 2.593026 GGCATCTAGACTAGACCTGCT 58.407 52.381 26.15 7.22 39.54 4.24
3070 3192 2.962421 GGCATCTAGACTAGACCTGCTT 59.038 50.000 26.15 6.62 39.54 3.91
3071 3193 3.243704 GGCATCTAGACTAGACCTGCTTG 60.244 52.174 26.15 16.54 39.54 4.01
3072 3194 3.243704 GCATCTAGACTAGACCTGCTTGG 60.244 52.174 22.59 6.44 37.66 3.61
3073 3195 2.379972 TCTAGACTAGACCTGCTTGGC 58.620 52.381 8.17 0.00 40.22 4.52
3074 3196 2.024846 TCTAGACTAGACCTGCTTGGCT 60.025 50.000 8.17 0.00 40.89 4.75
3075 3197 0.901124 AGACTAGACCTGCTTGGCTG 59.099 55.000 0.00 0.00 36.30 4.85
3129 3251 1.799933 AGTAGGGATCAGGCCTTCTG 58.200 55.000 0.00 0.00 44.68 3.02
3133 3255 1.522580 GGATCAGGCCTTCTGCGTC 60.523 63.158 0.00 0.00 43.06 5.19
3134 3256 1.519719 GATCAGGCCTTCTGCGTCT 59.480 57.895 0.00 0.00 43.06 4.18
3135 3257 0.529555 GATCAGGCCTTCTGCGTCTC 60.530 60.000 0.00 0.00 43.06 3.36
3136 3258 1.260538 ATCAGGCCTTCTGCGTCTCA 61.261 55.000 0.00 0.00 43.06 3.27
3137 3259 1.739562 CAGGCCTTCTGCGTCTCAC 60.740 63.158 0.00 0.00 42.61 3.51
3138 3260 2.435059 GGCCTTCTGCGTCTCACC 60.435 66.667 0.00 0.00 42.61 4.02
3139 3261 2.659610 GCCTTCTGCGTCTCACCT 59.340 61.111 0.00 0.00 0.00 4.00
3140 3262 1.446966 GCCTTCTGCGTCTCACCTC 60.447 63.158 0.00 0.00 0.00 3.85
3141 3263 1.216710 CCTTCTGCGTCTCACCTCC 59.783 63.158 0.00 0.00 0.00 4.30
3142 3264 1.536073 CCTTCTGCGTCTCACCTCCA 61.536 60.000 0.00 0.00 0.00 3.86
3143 3265 0.108898 CTTCTGCGTCTCACCTCCAG 60.109 60.000 0.00 0.00 0.00 3.86
3144 3266 0.827925 TTCTGCGTCTCACCTCCAGT 60.828 55.000 0.00 0.00 0.00 4.00
3145 3267 0.827925 TCTGCGTCTCACCTCCAGTT 60.828 55.000 0.00 0.00 0.00 3.16
3146 3268 0.389166 CTGCGTCTCACCTCCAGTTC 60.389 60.000 0.00 0.00 0.00 3.01
3147 3269 0.827925 TGCGTCTCACCTCCAGTTCT 60.828 55.000 0.00 0.00 0.00 3.01
3148 3270 0.318762 GCGTCTCACCTCCAGTTCTT 59.681 55.000 0.00 0.00 0.00 2.52
3149 3271 1.937108 GCGTCTCACCTCCAGTTCTTG 60.937 57.143 0.00 0.00 0.00 3.02
3150 3272 1.341531 CGTCTCACCTCCAGTTCTTGT 59.658 52.381 0.00 0.00 0.00 3.16
3151 3273 2.608261 CGTCTCACCTCCAGTTCTTGTC 60.608 54.545 0.00 0.00 0.00 3.18
3152 3274 2.365617 GTCTCACCTCCAGTTCTTGTCA 59.634 50.000 0.00 0.00 0.00 3.58
3153 3275 2.630098 TCTCACCTCCAGTTCTTGTCAG 59.370 50.000 0.00 0.00 0.00 3.51
3154 3276 2.366916 CTCACCTCCAGTTCTTGTCAGT 59.633 50.000 0.00 0.00 0.00 3.41
3155 3277 2.103094 TCACCTCCAGTTCTTGTCAGTG 59.897 50.000 0.00 0.00 0.00 3.66
3156 3278 2.103094 CACCTCCAGTTCTTGTCAGTGA 59.897 50.000 0.00 0.00 0.00 3.41
3157 3279 2.975489 ACCTCCAGTTCTTGTCAGTGAT 59.025 45.455 0.00 0.00 0.00 3.06
3158 3280 4.021104 CACCTCCAGTTCTTGTCAGTGATA 60.021 45.833 0.00 0.00 0.00 2.15
3159 3281 4.021016 ACCTCCAGTTCTTGTCAGTGATAC 60.021 45.833 0.00 0.00 0.00 2.24
3160 3282 4.499183 CTCCAGTTCTTGTCAGTGATACC 58.501 47.826 0.00 0.00 0.00 2.73
3161 3283 3.056821 TCCAGTTCTTGTCAGTGATACCG 60.057 47.826 0.00 0.00 0.00 4.02
3162 3284 3.306088 CCAGTTCTTGTCAGTGATACCGT 60.306 47.826 0.00 0.00 0.00 4.83
3163 3285 4.307432 CAGTTCTTGTCAGTGATACCGTT 58.693 43.478 0.00 0.00 0.00 4.44
3164 3286 5.466819 CAGTTCTTGTCAGTGATACCGTTA 58.533 41.667 0.00 0.00 0.00 3.18
3165 3287 5.573282 CAGTTCTTGTCAGTGATACCGTTAG 59.427 44.000 0.00 0.00 0.00 2.34
3166 3288 4.106029 TCTTGTCAGTGATACCGTTAGC 57.894 45.455 0.00 0.00 0.00 3.09
3167 3289 3.508402 TCTTGTCAGTGATACCGTTAGCA 59.492 43.478 0.00 0.00 0.00 3.49
3184 3306 5.118203 CGTTAGCACTTCACTAACTAACCAC 59.882 44.000 10.83 0.00 44.72 4.16
3197 3319 5.447624 AACTAACCACTACAATTTGCACC 57.552 39.130 0.00 0.00 0.00 5.01
3200 3322 3.799432 ACCACTACAATTTGCACCCTA 57.201 42.857 0.00 0.00 0.00 3.53
3201 3323 4.107127 ACCACTACAATTTGCACCCTAA 57.893 40.909 0.00 0.00 0.00 2.69
3203 3325 4.896482 ACCACTACAATTTGCACCCTAAAA 59.104 37.500 0.00 0.00 0.00 1.52
3204 3326 5.542251 ACCACTACAATTTGCACCCTAAAAT 59.458 36.000 0.00 0.00 0.00 1.82
3205 3327 6.099341 CCACTACAATTTGCACCCTAAAATC 58.901 40.000 0.00 0.00 0.00 2.17
3206 3328 6.071391 CCACTACAATTTGCACCCTAAAATCT 60.071 38.462 0.00 0.00 0.00 2.40
3207 3329 7.029563 CACTACAATTTGCACCCTAAAATCTC 58.970 38.462 0.00 0.00 0.00 2.75
3208 3330 5.405935 ACAATTTGCACCCTAAAATCTCC 57.594 39.130 0.00 0.00 0.00 3.71
3209 3331 5.086621 ACAATTTGCACCCTAAAATCTCCT 58.913 37.500 0.00 0.00 0.00 3.69
3210 3332 5.185828 ACAATTTGCACCCTAAAATCTCCTC 59.814 40.000 0.00 0.00 0.00 3.71
3211 3333 4.657814 TTTGCACCCTAAAATCTCCTCT 57.342 40.909 0.00 0.00 0.00 3.69
3212 3334 3.914426 TGCACCCTAAAATCTCCTCTC 57.086 47.619 0.00 0.00 0.00 3.20
3213 3335 3.454858 TGCACCCTAAAATCTCCTCTCT 58.545 45.455 0.00 0.00 0.00 3.10
3214 3336 3.846588 TGCACCCTAAAATCTCCTCTCTT 59.153 43.478 0.00 0.00 0.00 2.85
3215 3337 4.289672 TGCACCCTAAAATCTCCTCTCTTT 59.710 41.667 0.00 0.00 0.00 2.52
3216 3338 4.878971 GCACCCTAAAATCTCCTCTCTTTC 59.121 45.833 0.00 0.00 0.00 2.62
3217 3339 5.432645 CACCCTAAAATCTCCTCTCTTTCC 58.567 45.833 0.00 0.00 0.00 3.13
3218 3340 4.475381 ACCCTAAAATCTCCTCTCTTTCCC 59.525 45.833 0.00 0.00 0.00 3.97
3219 3341 4.141367 CCCTAAAATCTCCTCTCTTTCCCC 60.141 50.000 0.00 0.00 0.00 4.81
3220 3342 4.141367 CCTAAAATCTCCTCTCTTTCCCCC 60.141 50.000 0.00 0.00 0.00 5.40
3241 3363 2.985456 GCTCCCTGCAGCTGTACT 59.015 61.111 16.64 0.00 42.31 2.73
3274 3396 9.865321 AATCATATTGTTCTCCACTCATTTTTG 57.135 29.630 0.00 0.00 0.00 2.44
3275 3397 8.634335 TCATATTGTTCTCCACTCATTTTTGA 57.366 30.769 0.00 0.00 0.00 2.69
3276 3398 8.733458 TCATATTGTTCTCCACTCATTTTTGAG 58.267 33.333 1.55 1.55 41.45 3.02
3285 3407 6.070656 TCCACTCATTTTTGAGATGTTTCCT 58.929 36.000 9.82 0.00 39.14 3.36
3294 3416 3.942829 TGAGATGTTTCCTGGTGATGAC 58.057 45.455 0.00 0.00 0.00 3.06
3299 3421 2.162681 GTTTCCTGGTGATGACAAGGG 58.837 52.381 5.83 0.00 0.00 3.95
3301 3423 0.178876 TCCTGGTGATGACAAGGGGA 60.179 55.000 5.83 0.00 0.00 4.81
3303 3425 2.126882 CCTGGTGATGACAAGGGGATA 58.873 52.381 0.00 0.00 0.00 2.59
3325 3449 9.106070 GGATAAAAATGTACCGTTACTCTGAAT 57.894 33.333 0.00 0.00 0.00 2.57
3329 3453 5.871396 ATGTACCGTTACTCTGAATCCAT 57.129 39.130 0.00 0.00 0.00 3.41
3339 3463 7.517417 CGTTACTCTGAATCCATAGCATTTGTC 60.517 40.741 0.00 0.00 0.00 3.18
3340 3464 5.999044 ACTCTGAATCCATAGCATTTGTCT 58.001 37.500 0.00 0.00 0.00 3.41
3358 3482 1.066858 TCTGCTCTTTGTTAGCGAGGG 60.067 52.381 0.00 0.00 43.11 4.30
3369 3493 0.981183 TAGCGAGGGAACATTGGTGT 59.019 50.000 0.00 0.00 41.28 4.16
3370 3494 0.981183 AGCGAGGGAACATTGGTGTA 59.019 50.000 0.00 0.00 37.67 2.90
3371 3495 1.084289 GCGAGGGAACATTGGTGTAC 58.916 55.000 0.00 0.00 37.67 2.90
3372 3496 1.338769 GCGAGGGAACATTGGTGTACT 60.339 52.381 0.00 0.00 37.67 2.73
3373 3497 2.618053 CGAGGGAACATTGGTGTACTC 58.382 52.381 0.00 0.00 37.67 2.59
3374 3498 2.618053 GAGGGAACATTGGTGTACTCG 58.382 52.381 0.00 0.00 37.67 4.18
3375 3499 1.278127 AGGGAACATTGGTGTACTCGG 59.722 52.381 0.00 0.00 37.67 4.63
3376 3500 1.002773 GGGAACATTGGTGTACTCGGT 59.997 52.381 0.00 0.00 37.67 4.69
3377 3501 2.073816 GGAACATTGGTGTACTCGGTG 58.926 52.381 0.00 0.00 37.67 4.94
3380 3504 1.202710 ACATTGGTGTACTCGGTGCAA 60.203 47.619 0.00 0.00 36.63 4.08
3399 3523 3.395639 CAAAACAGGCAATTGCATCTGT 58.604 40.909 30.32 28.36 42.53 3.41
3402 3526 4.445452 AACAGGCAATTGCATCTGTAAG 57.555 40.909 30.28 16.43 40.80 2.34
3521 3649 7.036220 GTCAGTCTGCATACAGTAATACAAGT 58.964 38.462 4.92 0.00 44.77 3.16
3526 3654 9.529325 GTCTGCATACAGTAATACAAGTGATTA 57.471 33.333 0.00 0.00 44.77 1.75
3560 3688 8.594550 ACATCTTCTTAATATTAGTATGCGGGT 58.405 33.333 0.00 0.00 0.00 5.28
3573 3701 2.360350 CGGGTGCATTGCCTCTGT 60.360 61.111 6.12 0.00 0.00 3.41
3574 3702 2.401766 CGGGTGCATTGCCTCTGTC 61.402 63.158 6.12 0.00 0.00 3.51
3580 3708 1.300971 GCATTGCCTCTGTCTGCGAA 61.301 55.000 0.00 0.00 0.00 4.70
3582 3710 0.674895 ATTGCCTCTGTCTGCGAACC 60.675 55.000 0.00 0.00 0.00 3.62
3786 3937 7.413000 GCTTGAAAGATAACAATTCGCAGTAGA 60.413 37.037 0.00 0.00 0.00 2.59
3802 4271 5.612865 GCAGTAGAAACGAAGATGACTTTG 58.387 41.667 0.00 0.00 41.76 2.77
3854 4323 5.230942 GCACAGAGCAAAGTTTCTACTAGA 58.769 41.667 0.00 0.00 44.79 2.43
4000 4494 5.239359 ACCGAAAAAGTTACAACAGAACC 57.761 39.130 0.00 0.00 0.00 3.62
4002 4496 5.163693 ACCGAAAAAGTTACAACAGAACCTG 60.164 40.000 0.00 0.00 37.52 4.00
4005 4499 1.878953 AGTTACAACAGAACCTGCCG 58.121 50.000 0.00 0.00 34.37 5.69
4023 4517 7.033185 ACCTGCCGTATGAAATAATGAAAAAC 58.967 34.615 0.00 0.00 0.00 2.43
4027 4521 9.429359 TGCCGTATGAAATAATGAAAAACATTT 57.571 25.926 0.00 0.00 45.60 2.32
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 3.302870 GCTTCTTTTACGCGTGACTTTGA 60.303 43.478 24.59 9.56 0.00 2.69
2 3 2.964768 GCTTCTTTTACGCGTGACTTTG 59.035 45.455 24.59 7.71 0.00 2.77
3 4 2.348218 CGCTTCTTTTACGCGTGACTTT 60.348 45.455 24.59 0.00 41.78 2.66
4 5 1.191647 CGCTTCTTTTACGCGTGACTT 59.808 47.619 24.59 0.00 41.78 3.01
6 7 0.780002 TCGCTTCTTTTACGCGTGAC 59.220 50.000 24.59 0.00 46.31 3.67
7 8 1.489574 TTCGCTTCTTTTACGCGTGA 58.510 45.000 24.59 11.94 46.31 4.35
8 9 2.222624 CTTTCGCTTCTTTTACGCGTG 58.777 47.619 24.59 4.70 46.31 5.34
9 10 1.862827 ACTTTCGCTTCTTTTACGCGT 59.137 42.857 19.17 19.17 46.31 6.01
11 12 3.515071 TGACTTTCGCTTCTTTTACGC 57.485 42.857 0.00 0.00 0.00 4.42
12 13 4.828704 TGTTGACTTTCGCTTCTTTTACG 58.171 39.130 0.00 0.00 0.00 3.18
13 14 6.659776 AGATGTTGACTTTCGCTTCTTTTAC 58.340 36.000 0.00 0.00 0.00 2.01
16 17 5.757850 AAGATGTTGACTTTCGCTTCTTT 57.242 34.783 0.00 0.00 0.00 2.52
18 19 8.723942 ATTATAAGATGTTGACTTTCGCTTCT 57.276 30.769 0.00 0.00 0.00 2.85
19 20 9.214953 CAATTATAAGATGTTGACTTTCGCTTC 57.785 33.333 0.00 0.00 0.00 3.86
20 21 7.698130 GCAATTATAAGATGTTGACTTTCGCTT 59.302 33.333 1.55 0.00 0.00 4.68
21 22 7.148255 TGCAATTATAAGATGTTGACTTTCGCT 60.148 33.333 1.55 0.00 0.00 4.93
22 23 6.966632 TGCAATTATAAGATGTTGACTTTCGC 59.033 34.615 1.55 0.00 0.00 4.70
23 24 8.894409 TTGCAATTATAAGATGTTGACTTTCG 57.106 30.769 0.00 0.00 0.00 3.46
25 26 9.979578 TGTTTGCAATTATAAGATGTTGACTTT 57.020 25.926 0.00 0.00 0.00 2.66
26 27 9.979578 TTGTTTGCAATTATAAGATGTTGACTT 57.020 25.926 0.00 0.00 0.00 3.01
27 28 9.979578 TTTGTTTGCAATTATAAGATGTTGACT 57.020 25.926 0.00 0.00 34.18 3.41
31 32 9.995003 TCCTTTTGTTTGCAATTATAAGATGTT 57.005 25.926 0.00 0.00 34.18 2.71
32 33 9.643693 CTCCTTTTGTTTGCAATTATAAGATGT 57.356 29.630 0.00 0.00 34.18 3.06
33 34 9.643693 ACTCCTTTTGTTTGCAATTATAAGATG 57.356 29.630 0.00 3.16 34.18 2.90
44 45 9.474920 CAAGAAAATATACTCCTTTTGTTTGCA 57.525 29.630 0.00 0.00 28.73 4.08
45 46 8.925700 CCAAGAAAATATACTCCTTTTGTTTGC 58.074 33.333 0.00 0.00 28.73 3.68
48 49 9.588096 AGTCCAAGAAAATATACTCCTTTTGTT 57.412 29.630 0.00 0.00 30.61 2.83
49 50 9.588096 AAGTCCAAGAAAATATACTCCTTTTGT 57.412 29.630 0.00 0.00 0.00 2.83
50 51 9.846248 CAAGTCCAAGAAAATATACTCCTTTTG 57.154 33.333 0.00 0.00 0.00 2.44
51 52 9.807921 TCAAGTCCAAGAAAATATACTCCTTTT 57.192 29.630 0.00 0.00 0.00 2.27
52 53 9.807921 TTCAAGTCCAAGAAAATATACTCCTTT 57.192 29.630 0.00 0.00 0.00 3.11
53 54 9.807921 TTTCAAGTCCAAGAAAATATACTCCTT 57.192 29.630 0.00 0.00 31.35 3.36
54 55 9.807921 TTTTCAAGTCCAAGAAAATATACTCCT 57.192 29.630 0.00 0.00 38.43 3.69
55 56 9.841880 GTTTTCAAGTCCAAGAAAATATACTCC 57.158 33.333 0.00 0.00 43.25 3.85
62 63 9.480053 CATGTATGTTTTCAAGTCCAAGAAAAT 57.520 29.630 0.00 0.00 43.25 1.82
63 64 8.474025 ACATGTATGTTTTCAAGTCCAAGAAAA 58.526 29.630 0.00 0.00 40.34 2.29
64 65 8.006298 ACATGTATGTTTTCAAGTCCAAGAAA 57.994 30.769 0.00 0.00 37.90 2.52
65 66 7.581213 ACATGTATGTTTTCAAGTCCAAGAA 57.419 32.000 0.00 0.00 37.90 2.52
80 81 8.260818 AGAGCTTATACAACTGAACATGTATGT 58.739 33.333 0.00 2.77 41.52 2.29
81 82 8.546244 CAGAGCTTATACAACTGAACATGTATG 58.454 37.037 0.00 0.00 41.52 2.39
82 83 7.225538 GCAGAGCTTATACAACTGAACATGTAT 59.774 37.037 0.00 4.13 43.30 2.29
83 84 6.535150 GCAGAGCTTATACAACTGAACATGTA 59.465 38.462 0.00 0.00 36.54 2.29
84 85 5.352569 GCAGAGCTTATACAACTGAACATGT 59.647 40.000 0.00 0.00 0.00 3.21
85 86 5.352293 TGCAGAGCTTATACAACTGAACATG 59.648 40.000 0.00 0.00 0.00 3.21
86 87 5.491070 TGCAGAGCTTATACAACTGAACAT 58.509 37.500 0.00 0.00 0.00 2.71
87 88 4.893608 TGCAGAGCTTATACAACTGAACA 58.106 39.130 0.00 0.00 0.00 3.18
88 89 5.862924 TTGCAGAGCTTATACAACTGAAC 57.137 39.130 0.00 0.00 0.00 3.18
89 90 6.094048 GGATTTGCAGAGCTTATACAACTGAA 59.906 38.462 0.00 0.00 0.00 3.02
90 91 5.586243 GGATTTGCAGAGCTTATACAACTGA 59.414 40.000 0.00 0.00 0.00 3.41
91 92 5.587844 AGGATTTGCAGAGCTTATACAACTG 59.412 40.000 0.00 0.00 0.00 3.16
92 93 5.749462 AGGATTTGCAGAGCTTATACAACT 58.251 37.500 0.00 0.00 0.00 3.16
93 94 7.736447 ATAGGATTTGCAGAGCTTATACAAC 57.264 36.000 0.00 0.00 0.00 3.32
95 96 9.658799 GAATATAGGATTTGCAGAGCTTATACA 57.341 33.333 6.51 0.00 0.00 2.29
96 97 9.883142 AGAATATAGGATTTGCAGAGCTTATAC 57.117 33.333 6.51 0.00 0.00 1.47
98 99 8.600668 TGAGAATATAGGATTTGCAGAGCTTAT 58.399 33.333 2.75 2.75 0.00 1.73
99 100 7.966812 TGAGAATATAGGATTTGCAGAGCTTA 58.033 34.615 0.00 0.00 0.00 3.09
100 101 6.835174 TGAGAATATAGGATTTGCAGAGCTT 58.165 36.000 0.00 0.00 0.00 3.74
101 102 6.430962 TGAGAATATAGGATTTGCAGAGCT 57.569 37.500 0.00 0.00 0.00 4.09
102 103 6.654161 ACATGAGAATATAGGATTTGCAGAGC 59.346 38.462 0.00 0.00 0.00 4.09
103 104 9.887629 ATACATGAGAATATAGGATTTGCAGAG 57.112 33.333 0.00 0.00 0.00 3.35
104 105 9.662947 CATACATGAGAATATAGGATTTGCAGA 57.337 33.333 0.00 0.00 0.00 4.26
105 106 9.445878 ACATACATGAGAATATAGGATTTGCAG 57.554 33.333 0.00 0.00 0.00 4.41
118 119 9.416794 CTCGCTAAAATCTACATACATGAGAAT 57.583 33.333 0.00 0.00 0.00 2.40
119 120 7.382488 GCTCGCTAAAATCTACATACATGAGAA 59.618 37.037 0.00 0.00 0.00 2.87
120 121 6.863645 GCTCGCTAAAATCTACATACATGAGA 59.136 38.462 0.00 0.00 0.00 3.27
121 122 6.090088 GGCTCGCTAAAATCTACATACATGAG 59.910 42.308 0.00 0.00 0.00 2.90
122 123 5.926542 GGCTCGCTAAAATCTACATACATGA 59.073 40.000 0.00 0.00 0.00 3.07
123 124 5.696270 TGGCTCGCTAAAATCTACATACATG 59.304 40.000 0.00 0.00 0.00 3.21
124 125 5.853936 TGGCTCGCTAAAATCTACATACAT 58.146 37.500 0.00 0.00 0.00 2.29
125 126 5.270893 TGGCTCGCTAAAATCTACATACA 57.729 39.130 0.00 0.00 0.00 2.29
126 127 5.696724 ACATGGCTCGCTAAAATCTACATAC 59.303 40.000 0.00 0.00 0.00 2.39
127 128 5.853936 ACATGGCTCGCTAAAATCTACATA 58.146 37.500 0.00 0.00 0.00 2.29
128 129 4.708177 ACATGGCTCGCTAAAATCTACAT 58.292 39.130 0.00 0.00 0.00 2.29
129 130 4.137116 ACATGGCTCGCTAAAATCTACA 57.863 40.909 0.00 0.00 0.00 2.74
130 131 5.753921 AGTAACATGGCTCGCTAAAATCTAC 59.246 40.000 0.00 0.00 0.00 2.59
131 132 5.753438 CAGTAACATGGCTCGCTAAAATCTA 59.247 40.000 0.00 0.00 0.00 1.98
132 133 4.572389 CAGTAACATGGCTCGCTAAAATCT 59.428 41.667 0.00 0.00 0.00 2.40
133 134 4.332819 ACAGTAACATGGCTCGCTAAAATC 59.667 41.667 0.00 0.00 0.00 2.17
134 135 4.261801 ACAGTAACATGGCTCGCTAAAAT 58.738 39.130 0.00 0.00 0.00 1.82
135 136 3.670625 ACAGTAACATGGCTCGCTAAAA 58.329 40.909 0.00 0.00 0.00 1.52
136 137 3.328382 ACAGTAACATGGCTCGCTAAA 57.672 42.857 0.00 0.00 0.00 1.85
137 138 3.193903 TGTACAGTAACATGGCTCGCTAA 59.806 43.478 0.00 0.00 0.00 3.09
138 139 2.756207 TGTACAGTAACATGGCTCGCTA 59.244 45.455 0.00 0.00 0.00 4.26
139 140 1.548719 TGTACAGTAACATGGCTCGCT 59.451 47.619 0.00 0.00 0.00 4.93
140 141 1.659098 GTGTACAGTAACATGGCTCGC 59.341 52.381 0.00 0.00 0.00 5.03
141 142 3.179830 GAGTGTACAGTAACATGGCTCG 58.820 50.000 2.39 0.00 0.00 5.03
142 143 3.522553 GGAGTGTACAGTAACATGGCTC 58.477 50.000 2.39 0.00 0.00 4.70
143 144 2.236395 GGGAGTGTACAGTAACATGGCT 59.764 50.000 2.39 0.00 0.00 4.75
144 145 2.236395 AGGGAGTGTACAGTAACATGGC 59.764 50.000 2.39 0.00 0.00 4.40
145 146 3.513912 TGAGGGAGTGTACAGTAACATGG 59.486 47.826 2.39 0.00 0.00 3.66
146 147 4.801330 TGAGGGAGTGTACAGTAACATG 57.199 45.455 2.39 0.00 0.00 3.21
147 148 4.383118 GCATGAGGGAGTGTACAGTAACAT 60.383 45.833 2.39 4.70 0.00 2.71
148 149 3.056107 GCATGAGGGAGTGTACAGTAACA 60.056 47.826 2.39 2.56 0.00 2.41
149 150 3.056107 TGCATGAGGGAGTGTACAGTAAC 60.056 47.826 2.39 0.00 0.00 2.50
150 151 3.169908 TGCATGAGGGAGTGTACAGTAA 58.830 45.455 2.39 0.00 0.00 2.24
151 152 2.815158 TGCATGAGGGAGTGTACAGTA 58.185 47.619 2.39 0.00 0.00 2.74
152 153 1.644509 TGCATGAGGGAGTGTACAGT 58.355 50.000 1.90 1.90 0.00 3.55
153 154 2.996249 ATGCATGAGGGAGTGTACAG 57.004 50.000 0.00 0.00 0.00 2.74
154 155 7.790782 TTATATATGCATGAGGGAGTGTACA 57.209 36.000 10.16 0.00 0.00 2.90
155 156 8.094548 TGTTTATATATGCATGAGGGAGTGTAC 58.905 37.037 10.16 0.00 0.00 2.90
156 157 8.201242 TGTTTATATATGCATGAGGGAGTGTA 57.799 34.615 10.16 0.00 0.00 2.90
157 158 7.078249 TGTTTATATATGCATGAGGGAGTGT 57.922 36.000 10.16 0.00 0.00 3.55
158 159 7.984422 TTGTTTATATATGCATGAGGGAGTG 57.016 36.000 10.16 0.00 0.00 3.51
190 191 2.371841 AGGAGGCAGTGTTCATGTAACA 59.628 45.455 6.62 6.62 45.90 2.41
191 192 3.059352 AGGAGGCAGTGTTCATGTAAC 57.941 47.619 0.00 0.00 38.67 2.50
192 193 3.788227 AAGGAGGCAGTGTTCATGTAA 57.212 42.857 0.00 0.00 0.00 2.41
193 194 3.411446 CAAAGGAGGCAGTGTTCATGTA 58.589 45.455 0.00 0.00 0.00 2.29
194 195 2.233271 CAAAGGAGGCAGTGTTCATGT 58.767 47.619 0.00 0.00 0.00 3.21
195 196 1.068055 GCAAAGGAGGCAGTGTTCATG 60.068 52.381 0.00 0.00 0.00 3.07
196 197 1.251251 GCAAAGGAGGCAGTGTTCAT 58.749 50.000 0.00 0.00 0.00 2.57
197 198 0.106769 TGCAAAGGAGGCAGTGTTCA 60.107 50.000 0.00 0.00 36.11 3.18
198 199 1.032014 TTGCAAAGGAGGCAGTGTTC 58.968 50.000 0.00 0.00 43.05 3.18
199 200 1.484038 TTTGCAAAGGAGGCAGTGTT 58.516 45.000 8.05 0.00 43.05 3.32
200 201 1.484038 TTTTGCAAAGGAGGCAGTGT 58.516 45.000 12.41 0.00 43.05 3.55
201 202 2.825861 ATTTTGCAAAGGAGGCAGTG 57.174 45.000 12.41 0.00 43.05 3.66
202 203 3.500343 AGTATTTTGCAAAGGAGGCAGT 58.500 40.909 12.41 0.00 43.05 4.40
203 204 4.525912 AAGTATTTTGCAAAGGAGGCAG 57.474 40.909 12.41 0.00 43.05 4.85
204 205 6.041523 ACTTTAAGTATTTTGCAAAGGAGGCA 59.958 34.615 12.41 0.00 40.00 4.75
205 206 6.455647 ACTTTAAGTATTTTGCAAAGGAGGC 58.544 36.000 12.41 3.02 31.89 4.70
225 226 8.880750 GCTTGATTTAGGACGAACTATAACTTT 58.119 33.333 0.00 0.00 0.00 2.66
226 227 8.038944 TGCTTGATTTAGGACGAACTATAACTT 58.961 33.333 0.00 0.00 0.00 2.66
227 228 7.553334 TGCTTGATTTAGGACGAACTATAACT 58.447 34.615 0.00 0.00 0.00 2.24
228 229 7.766219 TGCTTGATTTAGGACGAACTATAAC 57.234 36.000 0.00 0.00 0.00 1.89
229 230 8.421784 AGATGCTTGATTTAGGACGAACTATAA 58.578 33.333 0.00 0.00 0.00 0.98
230 231 7.952671 AGATGCTTGATTTAGGACGAACTATA 58.047 34.615 0.00 0.00 0.00 1.31
231 232 6.821388 AGATGCTTGATTTAGGACGAACTAT 58.179 36.000 0.00 0.00 0.00 2.12
232 233 6.222038 AGATGCTTGATTTAGGACGAACTA 57.778 37.500 0.00 0.00 0.00 2.24
233 234 5.091261 AGATGCTTGATTTAGGACGAACT 57.909 39.130 0.00 0.00 0.00 3.01
234 235 5.803020 AAGATGCTTGATTTAGGACGAAC 57.197 39.130 0.00 0.00 0.00 3.95
235 236 7.915293 TTAAAGATGCTTGATTTAGGACGAA 57.085 32.000 0.00 0.00 0.00 3.85
236 237 7.915293 TTTAAAGATGCTTGATTTAGGACGA 57.085 32.000 0.00 0.00 0.00 4.20
306 307 4.599047 TTTGACATGCCGGAGAATTTTT 57.401 36.364 5.05 0.00 0.00 1.94
307 308 4.599047 TTTTGACATGCCGGAGAATTTT 57.401 36.364 5.05 0.00 0.00 1.82
308 309 4.220382 TCATTTTGACATGCCGGAGAATTT 59.780 37.500 5.05 0.00 0.00 1.82
309 310 3.763360 TCATTTTGACATGCCGGAGAATT 59.237 39.130 5.05 0.00 0.00 2.17
310 311 3.355378 TCATTTTGACATGCCGGAGAAT 58.645 40.909 5.05 0.00 0.00 2.40
311 312 2.789213 TCATTTTGACATGCCGGAGAA 58.211 42.857 5.05 0.00 0.00 2.87
312 313 2.488204 TCATTTTGACATGCCGGAGA 57.512 45.000 5.05 0.00 0.00 3.71
313 314 3.304257 GCTATCATTTTGACATGCCGGAG 60.304 47.826 5.05 0.00 0.00 4.63
314 315 2.618241 GCTATCATTTTGACATGCCGGA 59.382 45.455 5.05 0.00 0.00 5.14
315 316 2.358582 TGCTATCATTTTGACATGCCGG 59.641 45.455 0.00 0.00 0.00 6.13
316 317 3.696281 TGCTATCATTTTGACATGCCG 57.304 42.857 0.00 0.00 0.00 5.69
317 318 5.170021 TGTTTGCTATCATTTTGACATGCC 58.830 37.500 0.00 0.00 0.00 4.40
318 319 6.709145 TTGTTTGCTATCATTTTGACATGC 57.291 33.333 0.00 0.00 0.00 4.06
319 320 9.749490 GAAATTGTTTGCTATCATTTTGACATG 57.251 29.630 0.00 0.00 0.00 3.21
320 321 9.715121 AGAAATTGTTTGCTATCATTTTGACAT 57.285 25.926 4.56 0.00 0.00 3.06
333 334 9.545105 TCATTTTGACATTAGAAATTGTTTGCT 57.455 25.926 0.00 0.00 0.00 3.91
334 335 9.584839 GTCATTTTGACATTAGAAATTGTTTGC 57.415 29.630 2.85 0.00 46.22 3.68
351 352 5.105635 CGGGGTGTAGTAGTAGTCATTTTGA 60.106 44.000 0.00 0.00 0.00 2.69
352 353 5.107133 CGGGGTGTAGTAGTAGTCATTTTG 58.893 45.833 0.00 0.00 0.00 2.44
353 354 4.382362 GCGGGGTGTAGTAGTAGTCATTTT 60.382 45.833 0.00 0.00 0.00 1.82
354 355 3.131755 GCGGGGTGTAGTAGTAGTCATTT 59.868 47.826 0.00 0.00 0.00 2.32
355 356 2.692041 GCGGGGTGTAGTAGTAGTCATT 59.308 50.000 0.00 0.00 0.00 2.57
356 357 2.305009 GCGGGGTGTAGTAGTAGTCAT 58.695 52.381 0.00 0.00 0.00 3.06
357 358 1.004628 TGCGGGGTGTAGTAGTAGTCA 59.995 52.381 0.00 0.00 0.00 3.41
358 359 1.755179 TGCGGGGTGTAGTAGTAGTC 58.245 55.000 0.00 0.00 0.00 2.59
359 360 2.220653 TTGCGGGGTGTAGTAGTAGT 57.779 50.000 0.00 0.00 0.00 2.73
360 361 3.598019 TTTTGCGGGGTGTAGTAGTAG 57.402 47.619 0.00 0.00 0.00 2.57
362 363 2.934886 TTTTTGCGGGGTGTAGTAGT 57.065 45.000 0.00 0.00 0.00 2.73
416 417 9.391006 TCAAATCAAAGACACTAAAGTTGTACT 57.609 29.630 0.00 0.00 0.00 2.73
439 440 9.754382 ACTTCGACTAAAGTTGTAGTTAATCAA 57.246 29.630 4.32 0.00 36.91 2.57
440 441 9.754382 AACTTCGACTAAAGTTGTAGTTAATCA 57.246 29.630 16.44 0.00 45.38 2.57
452 453 7.445402 TGGTACTAGTACAACTTCGACTAAAGT 59.555 37.037 29.38 0.00 37.78 2.66
453 454 7.810658 TGGTACTAGTACAACTTCGACTAAAG 58.189 38.462 29.38 0.00 37.78 1.85
454 455 7.744087 TGGTACTAGTACAACTTCGACTAAA 57.256 36.000 29.38 0.00 37.78 1.85
455 456 7.607607 TGATGGTACTAGTACAACTTCGACTAA 59.392 37.037 29.38 6.69 37.78 2.24
456 457 7.105588 TGATGGTACTAGTACAACTTCGACTA 58.894 38.462 29.38 5.39 37.78 2.59
457 458 5.942236 TGATGGTACTAGTACAACTTCGACT 59.058 40.000 29.38 6.29 37.78 4.18
458 459 6.187125 TGATGGTACTAGTACAACTTCGAC 57.813 41.667 29.38 13.29 37.78 4.20
459 460 6.039047 GGATGATGGTACTAGTACAACTTCGA 59.961 42.308 29.38 13.65 37.78 3.71
460 461 6.207213 GGATGATGGTACTAGTACAACTTCG 58.793 44.000 29.38 0.00 37.78 3.79
461 462 6.207213 CGGATGATGGTACTAGTACAACTTC 58.793 44.000 29.38 23.09 37.78 3.01
462 463 5.068723 CCGGATGATGGTACTAGTACAACTT 59.931 44.000 29.38 18.30 37.78 2.66
463 464 4.583489 CCGGATGATGGTACTAGTACAACT 59.417 45.833 29.38 15.82 37.78 3.16
464 465 4.581824 TCCGGATGATGGTACTAGTACAAC 59.418 45.833 29.38 20.35 37.78 3.32
465 466 4.795469 TCCGGATGATGGTACTAGTACAA 58.205 43.478 29.38 21.96 37.78 2.41
466 467 4.442401 TCCGGATGATGGTACTAGTACA 57.558 45.455 29.38 18.03 37.78 2.90
467 468 5.979288 ATTCCGGATGATGGTACTAGTAC 57.021 43.478 22.53 22.53 35.40 2.73
468 469 7.236529 ACTAATTCCGGATGATGGTACTAGTA 58.763 38.462 4.15 0.00 0.00 1.82
469 470 6.075984 ACTAATTCCGGATGATGGTACTAGT 58.924 40.000 4.15 0.00 0.00 2.57
470 471 6.591750 ACTAATTCCGGATGATGGTACTAG 57.408 41.667 4.15 0.00 0.00 2.57
471 472 6.325545 ACAACTAATTCCGGATGATGGTACTA 59.674 38.462 4.15 0.00 0.00 1.82
472 473 5.130477 ACAACTAATTCCGGATGATGGTACT 59.870 40.000 4.15 0.00 0.00 2.73
473 474 5.365619 ACAACTAATTCCGGATGATGGTAC 58.634 41.667 4.15 0.00 0.00 3.34
474 475 5.129650 TGACAACTAATTCCGGATGATGGTA 59.870 40.000 4.15 0.00 0.00 3.25
475 476 4.080582 TGACAACTAATTCCGGATGATGGT 60.081 41.667 4.15 0.00 0.00 3.55
476 477 4.273480 GTGACAACTAATTCCGGATGATGG 59.727 45.833 4.15 0.00 0.00 3.51
477 478 5.007039 CAGTGACAACTAATTCCGGATGATG 59.993 44.000 4.15 4.09 33.79 3.07
478 479 5.104941 TCAGTGACAACTAATTCCGGATGAT 60.105 40.000 4.15 0.00 33.79 2.45
479 480 4.221924 TCAGTGACAACTAATTCCGGATGA 59.778 41.667 4.15 0.00 33.79 2.92
480 481 4.503910 TCAGTGACAACTAATTCCGGATG 58.496 43.478 4.15 0.97 33.79 3.51
481 482 4.819105 TCAGTGACAACTAATTCCGGAT 57.181 40.909 4.15 0.00 33.79 4.18
482 483 4.610605 TTCAGTGACAACTAATTCCGGA 57.389 40.909 0.00 0.00 33.79 5.14
483 484 5.391950 CCATTTCAGTGACAACTAATTCCGG 60.392 44.000 0.00 0.00 33.79 5.14
484 485 5.411361 TCCATTTCAGTGACAACTAATTCCG 59.589 40.000 0.00 0.00 33.79 4.30
485 486 6.817765 TCCATTTCAGTGACAACTAATTCC 57.182 37.500 0.00 0.00 33.79 3.01
489 490 9.778741 GGATATATCCATTTCAGTGACAACTAA 57.221 33.333 24.41 0.00 46.38 2.24
506 507 9.628016 AGCACTGAAGCACATCTGGATATATCC 62.628 44.444 22.92 22.92 41.41 2.59
507 508 5.350914 GCACTGAAGCACATCTGGATATATC 59.649 44.000 3.96 3.96 0.00 1.63
508 509 5.012871 AGCACTGAAGCACATCTGGATATAT 59.987 40.000 0.00 0.00 36.85 0.86
509 510 4.346127 AGCACTGAAGCACATCTGGATATA 59.654 41.667 0.00 0.00 36.85 0.86
510 511 3.136077 AGCACTGAAGCACATCTGGATAT 59.864 43.478 0.00 0.00 36.85 1.63
511 512 2.502947 AGCACTGAAGCACATCTGGATA 59.497 45.455 0.00 0.00 36.85 2.59
512 513 1.281287 AGCACTGAAGCACATCTGGAT 59.719 47.619 0.00 0.00 36.85 3.41
513 514 0.689055 AGCACTGAAGCACATCTGGA 59.311 50.000 0.00 0.00 36.85 3.86
514 515 2.093816 TCTAGCACTGAAGCACATCTGG 60.094 50.000 0.00 0.00 36.85 3.86
515 516 3.242549 TCTAGCACTGAAGCACATCTG 57.757 47.619 0.00 0.00 36.85 2.90
516 517 4.403752 TGTATCTAGCACTGAAGCACATCT 59.596 41.667 0.00 0.00 36.85 2.90
517 518 4.686972 TGTATCTAGCACTGAAGCACATC 58.313 43.478 0.00 0.00 36.85 3.06
518 519 4.743057 TGTATCTAGCACTGAAGCACAT 57.257 40.909 0.00 0.00 36.85 3.21
519 520 4.442052 GGATGTATCTAGCACTGAAGCACA 60.442 45.833 0.00 0.00 36.85 4.57
520 521 4.054671 GGATGTATCTAGCACTGAAGCAC 58.945 47.826 0.00 0.00 36.85 4.40
521 522 3.243535 CGGATGTATCTAGCACTGAAGCA 60.244 47.826 0.00 0.00 36.85 3.91
522 523 3.243569 ACGGATGTATCTAGCACTGAAGC 60.244 47.826 0.00 0.00 0.00 3.86
537 538 5.640357 TCTTATTTGTCGCTTAAACGGATGT 59.360 36.000 0.00 0.00 0.00 3.06
541 542 4.320491 CGTCTTATTTGTCGCTTAAACGG 58.680 43.478 0.00 0.00 0.00 4.44
543 544 5.346822 TCTCCGTCTTATTTGTCGCTTAAAC 59.653 40.000 0.00 0.00 0.00 2.01
560 561 7.587028 CGTCTTTGATTTAGTACTATCTCCGTC 59.413 40.741 2.79 0.00 0.00 4.79
563 564 7.427214 AGCGTCTTTGATTTAGTACTATCTCC 58.573 38.462 2.79 0.00 0.00 3.71
564 565 8.859517 AAGCGTCTTTGATTTAGTACTATCTC 57.140 34.615 2.79 4.55 0.00 2.75
572 573 9.959749 TTTCAAAATAAGCGTCTTTGATTTAGT 57.040 25.926 9.53 0.00 38.49 2.24
575 576 8.711457 CCATTTCAAAATAAGCGTCTTTGATTT 58.289 29.630 9.53 0.00 38.49 2.17
576 577 8.087750 TCCATTTCAAAATAAGCGTCTTTGATT 58.912 29.630 9.53 1.38 38.49 2.57
579 580 7.201461 CCATCCATTTCAAAATAAGCGTCTTTG 60.201 37.037 0.00 2.09 0.00 2.77
586 587 8.000780 AGTACTCCATCCATTTCAAAATAAGC 57.999 34.615 0.00 0.00 0.00 3.09
599 600 7.762615 CGAACATTTTAACTAGTACTCCATCCA 59.237 37.037 0.00 0.00 0.00 3.41
615 616 4.873746 TGGGCCAAATTCGAACATTTTA 57.126 36.364 2.13 0.00 0.00 1.52
624 625 2.029110 ACTCACATTTGGGCCAAATTCG 60.029 45.455 35.80 28.58 40.60 3.34
643 644 3.181463 TGGTAACTTGCTTTCCGTACACT 60.181 43.478 0.00 0.00 37.61 3.55
644 645 3.132925 TGGTAACTTGCTTTCCGTACAC 58.867 45.455 0.00 0.00 37.61 2.90
651 652 5.681543 CGAAAGTCTTTGGTAACTTGCTTTC 59.318 40.000 1.60 0.00 35.93 2.62
664 666 1.160137 CCCTGCCTCGAAAGTCTTTG 58.840 55.000 1.60 0.00 0.00 2.77
735 738 2.374184 CCGGCTTATCCAATTGGTCAA 58.626 47.619 23.76 16.62 36.34 3.18
903 907 2.851426 AGATCCTGGGAGCTCATGG 58.149 57.895 17.19 13.70 35.87 3.66
968 972 0.096628 GCTGCTGTGAAGCTCGATTG 59.903 55.000 0.00 0.00 37.69 2.67
978 982 4.687215 GGTGGCGAGCTGCTGTGA 62.687 66.667 7.01 0.00 45.43 3.58
983 987 1.450312 ATTACTGGTGGCGAGCTGC 60.450 57.895 0.00 0.00 45.38 5.25
984 988 1.091771 CCATTACTGGTGGCGAGCTG 61.092 60.000 0.00 3.34 37.79 4.24
985 989 1.221840 CCATTACTGGTGGCGAGCT 59.778 57.895 0.00 0.00 37.79 4.09
993 997 2.615493 CGAAGTGGAAGCCATTACTGGT 60.615 50.000 0.55 0.00 45.10 4.00
1054 1061 0.035343 GGTAAGGTTGCTCTCCCACC 60.035 60.000 0.00 0.00 0.00 4.61
1057 1064 1.628846 TCTTGGTAAGGTTGCTCTCCC 59.371 52.381 0.00 0.00 0.00 4.30
1134 1141 2.816958 CGCAGCGAGCACCTGAAT 60.817 61.111 9.98 0.00 46.13 2.57
1159 1166 1.218316 GGTTCTCCGTCGCCTGATT 59.782 57.895 0.00 0.00 0.00 2.57
1300 1310 0.613292 TCCCTGCTCTTCTTCTCGCT 60.613 55.000 0.00 0.00 0.00 4.93
1608 1618 7.336679 CCATGATTGAACTGTGAATACCAACTA 59.663 37.037 0.00 0.00 0.00 2.24
1610 1620 6.324819 CCATGATTGAACTGTGAATACCAAC 58.675 40.000 0.00 0.00 0.00 3.77
1614 1624 6.757897 TTCCCATGATTGAACTGTGAATAC 57.242 37.500 0.00 0.00 0.00 1.89
1615 1625 7.773489 TTTTCCCATGATTGAACTGTGAATA 57.227 32.000 0.00 0.00 0.00 1.75
1620 1630 6.646240 CGAAAATTTTCCCATGATTGAACTGT 59.354 34.615 22.15 0.00 33.68 3.55
1660 1674 3.885297 CCATTAATTCGAGCACCCAGATT 59.115 43.478 0.00 0.00 0.00 2.40
1661 1675 3.117888 ACCATTAATTCGAGCACCCAGAT 60.118 43.478 0.00 0.00 0.00 2.90
1668 1682 1.401552 GCTGCACCATTAATTCGAGCA 59.598 47.619 0.00 4.89 0.00 4.26
1671 1685 2.984562 TGAGCTGCACCATTAATTCGA 58.015 42.857 1.02 0.00 0.00 3.71
1699 1718 0.239347 AGAACGTGTCGTACCCGAAG 59.761 55.000 0.00 0.00 46.26 3.79
1800 1819 0.463620 GGCGATCTTCTTCTCCAGCT 59.536 55.000 0.00 0.00 0.00 4.24
1927 1946 1.376553 GCTCAGCTTGGTCACCTCC 60.377 63.158 0.00 0.00 0.00 4.30
2136 2158 5.863935 GCAAGAAAAGCTTAACGGAAATGAT 59.136 36.000 0.00 0.00 34.31 2.45
2137 2159 5.219633 GCAAGAAAAGCTTAACGGAAATGA 58.780 37.500 0.00 0.00 34.31 2.57
2138 2160 4.981674 TGCAAGAAAAGCTTAACGGAAATG 59.018 37.500 0.00 0.00 34.31 2.32
2139 2161 5.195001 TGCAAGAAAAGCTTAACGGAAAT 57.805 34.783 0.00 0.00 34.31 2.17
2140 2162 4.640789 TGCAAGAAAAGCTTAACGGAAA 57.359 36.364 0.00 0.00 34.31 3.13
2141 2163 4.037446 ACATGCAAGAAAAGCTTAACGGAA 59.963 37.500 0.00 0.00 34.31 4.30
2142 2164 3.568007 ACATGCAAGAAAAGCTTAACGGA 59.432 39.130 0.00 0.00 34.31 4.69
2144 2166 6.544620 CATACATGCAAGAAAAGCTTAACG 57.455 37.500 0.00 0.00 34.31 3.18
2160 2182 7.360353 CCATTATTACAAGGACGAGCATACATG 60.360 40.741 0.00 0.00 0.00 3.21
2161 2183 6.650807 CCATTATTACAAGGACGAGCATACAT 59.349 38.462 0.00 0.00 0.00 2.29
2162 2184 5.989168 CCATTATTACAAGGACGAGCATACA 59.011 40.000 0.00 0.00 0.00 2.29
2163 2185 5.989777 ACCATTATTACAAGGACGAGCATAC 59.010 40.000 0.00 0.00 0.00 2.39
2164 2186 6.041637 AGACCATTATTACAAGGACGAGCATA 59.958 38.462 0.00 0.00 0.00 3.14
2165 2187 5.036117 ACCATTATTACAAGGACGAGCAT 57.964 39.130 0.00 0.00 0.00 3.79
2166 2188 4.161565 AGACCATTATTACAAGGACGAGCA 59.838 41.667 0.00 0.00 0.00 4.26
2167 2189 4.694339 AGACCATTATTACAAGGACGAGC 58.306 43.478 0.00 0.00 0.00 5.03
2168 2190 5.523916 CCAAGACCATTATTACAAGGACGAG 59.476 44.000 0.00 0.00 0.00 4.18
2169 2191 5.424757 CCAAGACCATTATTACAAGGACGA 58.575 41.667 0.00 0.00 0.00 4.20
2170 2192 4.574828 CCCAAGACCATTATTACAAGGACG 59.425 45.833 0.00 0.00 0.00 4.79
2171 2193 5.751586 TCCCAAGACCATTATTACAAGGAC 58.248 41.667 0.00 0.00 0.00 3.85
2172 2194 6.184789 GTTCCCAAGACCATTATTACAAGGA 58.815 40.000 0.00 0.00 0.00 3.36
2173 2195 5.949354 TGTTCCCAAGACCATTATTACAAGG 59.051 40.000 0.00 0.00 0.00 3.61
2174 2196 7.040062 TGTTGTTCCCAAGACCATTATTACAAG 60.040 37.037 0.00 0.00 0.00 3.16
2175 2197 6.778069 TGTTGTTCCCAAGACCATTATTACAA 59.222 34.615 0.00 0.00 0.00 2.41
2176 2198 6.307776 TGTTGTTCCCAAGACCATTATTACA 58.692 36.000 0.00 0.00 0.00 2.41
2260 2283 2.264794 GACGGCACCAGGAACGAT 59.735 61.111 0.00 0.00 0.00 3.73
2299 2322 3.561503 CGACTCGTAGTTGTTCATCACA 58.438 45.455 0.00 0.00 0.00 3.58
2331 2354 1.302511 TCGAACAGGGCCTTCTTGC 60.303 57.895 1.32 0.00 0.00 4.01
2469 2492 1.995484 GAGATCGATGTGTGTGTGGTG 59.005 52.381 0.54 0.00 0.00 4.17
2474 2497 0.458370 TGGCGAGATCGATGTGTGTG 60.458 55.000 0.54 0.00 43.02 3.82
2477 2500 1.134699 ACAATGGCGAGATCGATGTGT 60.135 47.619 0.54 1.40 43.02 3.72
2478 2501 1.575244 ACAATGGCGAGATCGATGTG 58.425 50.000 0.54 0.00 43.02 3.21
2481 2504 3.131396 GGTTAACAATGGCGAGATCGAT 58.869 45.455 8.10 0.00 43.02 3.59
2482 2505 2.546778 GGTTAACAATGGCGAGATCGA 58.453 47.619 8.10 0.00 43.02 3.59
2484 2507 1.947456 GGGGTTAACAATGGCGAGATC 59.053 52.381 8.10 0.00 0.00 2.75
2485 2508 1.283613 TGGGGTTAACAATGGCGAGAT 59.716 47.619 8.10 0.00 0.00 2.75
2486 2509 0.693622 TGGGGTTAACAATGGCGAGA 59.306 50.000 8.10 0.00 0.00 4.04
3060 3182 1.920325 AGCCAGCCAAGCAGGTCTA 60.920 57.895 0.00 0.00 37.53 2.59
3061 3183 3.255397 AGCCAGCCAAGCAGGTCT 61.255 61.111 0.00 0.00 37.53 3.85
3063 3185 3.564345 CTCAGCCAGCCAAGCAGGT 62.564 63.158 0.00 0.00 37.53 4.00
3064 3186 2.750637 CTCAGCCAGCCAAGCAGG 60.751 66.667 0.00 0.00 38.28 4.85
3065 3187 3.441290 GCTCAGCCAGCCAAGCAG 61.441 66.667 8.52 0.00 43.17 4.24
3078 3200 1.341089 ACTAGGATCACTGACGGCTCA 60.341 52.381 0.00 0.00 0.00 4.26
3080 3202 2.577700 CTACTAGGATCACTGACGGCT 58.422 52.381 0.00 0.00 0.00 5.52
3082 3204 1.264557 CGCTACTAGGATCACTGACGG 59.735 57.143 0.00 0.00 0.00 4.79
3083 3205 1.941294 ACGCTACTAGGATCACTGACG 59.059 52.381 0.00 0.00 0.00 4.35
3084 3206 4.378774 TCTACGCTACTAGGATCACTGAC 58.621 47.826 0.00 0.00 0.00 3.51
3085 3207 4.684484 TCTACGCTACTAGGATCACTGA 57.316 45.455 0.00 0.00 0.00 3.41
3086 3208 4.817464 ACTTCTACGCTACTAGGATCACTG 59.183 45.833 0.00 0.00 0.00 3.66
3087 3209 5.038651 ACTTCTACGCTACTAGGATCACT 57.961 43.478 0.00 0.00 0.00 3.41
3088 3210 5.990996 ACTACTTCTACGCTACTAGGATCAC 59.009 44.000 0.00 0.00 0.00 3.06
3129 3251 0.318762 AAGAACTGGAGGTGAGACGC 59.681 55.000 0.00 0.00 0.00 5.19
3133 3255 2.366916 ACTGACAAGAACTGGAGGTGAG 59.633 50.000 0.00 0.00 0.00 3.51
3134 3256 2.103094 CACTGACAAGAACTGGAGGTGA 59.897 50.000 0.00 0.00 0.00 4.02
3135 3257 2.103094 TCACTGACAAGAACTGGAGGTG 59.897 50.000 0.00 0.00 0.00 4.00
3136 3258 2.398588 TCACTGACAAGAACTGGAGGT 58.601 47.619 0.00 0.00 0.00 3.85
3137 3259 3.692257 ATCACTGACAAGAACTGGAGG 57.308 47.619 0.00 0.00 0.00 4.30
3138 3260 4.499183 GGTATCACTGACAAGAACTGGAG 58.501 47.826 0.00 0.00 0.00 3.86
3139 3261 3.056821 CGGTATCACTGACAAGAACTGGA 60.057 47.826 0.00 0.00 0.00 3.86
3140 3262 3.254060 CGGTATCACTGACAAGAACTGG 58.746 50.000 0.00 0.00 0.00 4.00
3141 3263 3.914312 ACGGTATCACTGACAAGAACTG 58.086 45.455 0.00 0.00 0.00 3.16
3142 3264 4.602340 AACGGTATCACTGACAAGAACT 57.398 40.909 0.00 0.00 0.00 3.01
3143 3265 4.326548 GCTAACGGTATCACTGACAAGAAC 59.673 45.833 0.00 0.00 0.00 3.01
3144 3266 4.021807 TGCTAACGGTATCACTGACAAGAA 60.022 41.667 0.00 0.00 0.00 2.52
3145 3267 3.508402 TGCTAACGGTATCACTGACAAGA 59.492 43.478 0.00 0.00 0.00 3.02
3146 3268 3.612860 GTGCTAACGGTATCACTGACAAG 59.387 47.826 7.20 0.00 0.00 3.16
3147 3269 3.257375 AGTGCTAACGGTATCACTGACAA 59.743 43.478 15.80 0.00 35.78 3.18
3148 3270 2.823747 AGTGCTAACGGTATCACTGACA 59.176 45.455 15.80 0.00 35.78 3.58
3149 3271 3.505464 AGTGCTAACGGTATCACTGAC 57.495 47.619 15.80 0.00 35.78 3.51
3150 3272 3.508402 TGAAGTGCTAACGGTATCACTGA 59.492 43.478 17.12 5.22 36.91 3.41
3151 3273 3.612860 GTGAAGTGCTAACGGTATCACTG 59.387 47.826 17.12 0.00 36.91 3.66
3152 3274 3.510360 AGTGAAGTGCTAACGGTATCACT 59.490 43.478 11.11 11.11 38.12 3.41
3153 3275 3.846360 AGTGAAGTGCTAACGGTATCAC 58.154 45.455 6.35 6.35 36.77 3.06
3154 3276 5.404946 GTTAGTGAAGTGCTAACGGTATCA 58.595 41.667 0.00 0.00 38.92 2.15
3155 3277 5.945775 GTTAGTGAAGTGCTAACGGTATC 57.054 43.478 0.00 0.00 38.92 2.24
3161 3283 6.221659 AGTGGTTAGTTAGTGAAGTGCTAAC 58.778 40.000 7.01 7.01 45.05 2.34
3162 3284 6.415206 AGTGGTTAGTTAGTGAAGTGCTAA 57.585 37.500 0.00 0.00 0.00 3.09
3163 3285 6.491062 TGTAGTGGTTAGTTAGTGAAGTGCTA 59.509 38.462 0.00 0.00 0.00 3.49
3164 3286 4.957684 AGTGGTTAGTTAGTGAAGTGCT 57.042 40.909 0.00 0.00 0.00 4.40
3165 3287 5.535333 TGTAGTGGTTAGTTAGTGAAGTGC 58.465 41.667 0.00 0.00 0.00 4.40
3166 3288 8.603242 AATTGTAGTGGTTAGTTAGTGAAGTG 57.397 34.615 0.00 0.00 0.00 3.16
3167 3289 9.052759 CAAATTGTAGTGGTTAGTTAGTGAAGT 57.947 33.333 0.00 0.00 0.00 3.01
3170 3292 6.993308 TGCAAATTGTAGTGGTTAGTTAGTGA 59.007 34.615 0.00 0.00 0.00 3.41
3184 3306 6.378280 AGGAGATTTTAGGGTGCAAATTGTAG 59.622 38.462 0.00 0.00 0.00 2.74
3197 3319 4.141367 GGGGGAAAGAGAGGAGATTTTAGG 60.141 50.000 0.00 0.00 0.00 2.69
3224 3346 1.449246 CAGTACAGCTGCAGGGAGC 60.449 63.158 17.12 4.47 45.96 4.70
3225 3347 4.928398 CAGTACAGCTGCAGGGAG 57.072 61.111 17.12 0.00 38.52 4.30
3248 3370 9.865321 CAAAAATGAGTGGAGAACAATATGATT 57.135 29.630 0.00 0.00 0.00 2.57
3249 3371 9.246670 TCAAAAATGAGTGGAGAACAATATGAT 57.753 29.630 0.00 0.00 0.00 2.45
3250 3372 8.634335 TCAAAAATGAGTGGAGAACAATATGA 57.366 30.769 0.00 0.00 0.00 2.15
3251 3373 8.733458 TCTCAAAAATGAGTGGAGAACAATATG 58.267 33.333 5.80 0.00 37.23 1.78
3252 3374 8.868522 TCTCAAAAATGAGTGGAGAACAATAT 57.131 30.769 5.80 0.00 37.23 1.28
3253 3375 8.733458 CATCTCAAAAATGAGTGGAGAACAATA 58.267 33.333 5.80 0.00 38.05 1.90
3254 3376 7.232127 ACATCTCAAAAATGAGTGGAGAACAAT 59.768 33.333 5.80 0.00 38.05 2.71
3255 3377 6.547141 ACATCTCAAAAATGAGTGGAGAACAA 59.453 34.615 5.80 0.00 38.05 2.83
3256 3378 6.064060 ACATCTCAAAAATGAGTGGAGAACA 58.936 36.000 5.80 0.00 38.05 3.18
3257 3379 6.566197 ACATCTCAAAAATGAGTGGAGAAC 57.434 37.500 5.80 0.00 38.05 3.01
3258 3380 7.255590 GGAAACATCTCAAAAATGAGTGGAGAA 60.256 37.037 5.80 0.00 38.05 2.87
3259 3381 6.207417 GGAAACATCTCAAAAATGAGTGGAGA 59.793 38.462 5.80 0.00 38.80 3.71
3260 3382 6.208204 AGGAAACATCTCAAAAATGAGTGGAG 59.792 38.462 5.80 0.00 37.23 3.86
3261 3383 6.016024 CAGGAAACATCTCAAAAATGAGTGGA 60.016 38.462 5.80 0.00 37.23 4.02
3262 3384 6.154445 CAGGAAACATCTCAAAAATGAGTGG 58.846 40.000 5.80 2.78 37.23 4.00
3263 3385 6.154445 CCAGGAAACATCTCAAAAATGAGTG 58.846 40.000 5.80 6.37 37.23 3.51
3264 3386 5.835280 ACCAGGAAACATCTCAAAAATGAGT 59.165 36.000 0.00 0.00 37.23 3.41
3265 3387 6.016024 TCACCAGGAAACATCTCAAAAATGAG 60.016 38.462 0.00 0.00 37.28 2.90
3266 3388 5.832595 TCACCAGGAAACATCTCAAAAATGA 59.167 36.000 0.00 0.00 0.00 2.57
3267 3389 6.088016 TCACCAGGAAACATCTCAAAAATG 57.912 37.500 0.00 0.00 0.00 2.32
3268 3390 6.494491 TCATCACCAGGAAACATCTCAAAAAT 59.506 34.615 0.00 0.00 0.00 1.82
3269 3391 5.832595 TCATCACCAGGAAACATCTCAAAAA 59.167 36.000 0.00 0.00 0.00 1.94
3270 3392 5.241506 GTCATCACCAGGAAACATCTCAAAA 59.758 40.000 0.00 0.00 0.00 2.44
3271 3393 4.761739 GTCATCACCAGGAAACATCTCAAA 59.238 41.667 0.00 0.00 0.00 2.69
3272 3394 4.202451 TGTCATCACCAGGAAACATCTCAA 60.202 41.667 0.00 0.00 0.00 3.02
3273 3395 3.327464 TGTCATCACCAGGAAACATCTCA 59.673 43.478 0.00 0.00 0.00 3.27
3274 3396 3.942829 TGTCATCACCAGGAAACATCTC 58.057 45.455 0.00 0.00 0.00 2.75
3275 3397 4.330250 CTTGTCATCACCAGGAAACATCT 58.670 43.478 0.00 0.00 0.00 2.90
3276 3398 3.441572 CCTTGTCATCACCAGGAAACATC 59.558 47.826 0.00 0.00 37.60 3.06
3285 3407 4.666412 TTTTATCCCCTTGTCATCACCA 57.334 40.909 0.00 0.00 0.00 4.17
3294 3416 5.907866 AACGGTACATTTTTATCCCCTTG 57.092 39.130 0.00 0.00 0.00 3.61
3299 3421 8.483307 TTCAGAGTAACGGTACATTTTTATCC 57.517 34.615 14.15 0.00 32.12 2.59
3301 3423 9.106070 GGATTCAGAGTAACGGTACATTTTTAT 57.894 33.333 14.15 0.00 32.12 1.40
3303 3425 6.938030 TGGATTCAGAGTAACGGTACATTTTT 59.062 34.615 14.15 0.00 32.12 1.94
3339 3463 1.066858 TCCCTCGCTAACAAAGAGCAG 60.067 52.381 0.00 0.00 40.09 4.24
3340 3464 0.973632 TCCCTCGCTAACAAAGAGCA 59.026 50.000 0.00 0.00 40.09 4.26
3348 3472 1.737793 CACCAATGTTCCCTCGCTAAC 59.262 52.381 0.00 0.00 0.00 2.34
3350 3474 0.981183 ACACCAATGTTCCCTCGCTA 59.019 50.000 0.00 0.00 34.46 4.26
3358 3482 1.463444 GCACCGAGTACACCAATGTTC 59.537 52.381 0.00 0.00 40.48 3.18
3369 3493 0.179043 TGCCTGTTTTGCACCGAGTA 60.179 50.000 0.00 0.00 32.85 2.59
3370 3494 1.034838 TTGCCTGTTTTGCACCGAGT 61.035 50.000 0.00 0.00 38.72 4.18
3371 3495 0.314935 ATTGCCTGTTTTGCACCGAG 59.685 50.000 0.00 0.00 38.72 4.63
3372 3496 0.749649 AATTGCCTGTTTTGCACCGA 59.250 45.000 0.00 0.00 38.72 4.69
3373 3497 0.860533 CAATTGCCTGTTTTGCACCG 59.139 50.000 0.00 0.00 38.72 4.94
3374 3498 0.587768 GCAATTGCCTGTTTTGCACC 59.412 50.000 20.06 0.00 43.95 5.01
3377 3501 2.158841 CAGATGCAATTGCCTGTTTTGC 59.841 45.455 26.94 4.96 44.59 3.68
3380 3504 4.813027 CTTACAGATGCAATTGCCTGTTT 58.187 39.130 32.99 18.21 41.49 2.83
3399 3523 1.438651 AACGATTGCTGCTTCGCTTA 58.561 45.000 20.07 0.00 38.91 3.09
3402 3526 0.385974 ACAAACGATTGCTGCTTCGC 60.386 50.000 20.07 0.19 40.34 4.70
3410 3536 4.793216 CCTACTTTATGCACAAACGATTGC 59.207 41.667 5.20 0.58 40.34 3.56
3414 3540 5.543714 TCTTCCTACTTTATGCACAAACGA 58.456 37.500 0.00 0.00 0.00 3.85
3448 3575 0.107066 TGTGCCCGCTTGATCATGAT 60.107 50.000 8.25 8.25 0.00 2.45
3452 3579 0.537143 AAACTGTGCCCGCTTGATCA 60.537 50.000 0.00 0.00 0.00 2.92
3455 3582 1.810151 GAATAAACTGTGCCCGCTTGA 59.190 47.619 0.00 0.00 0.00 3.02
3460 3587 6.861065 ATACTAATGAATAAACTGTGCCCG 57.139 37.500 0.00 0.00 0.00 6.13
3461 3588 9.555727 TCTAATACTAATGAATAAACTGTGCCC 57.444 33.333 0.00 0.00 0.00 5.36
3495 3622 6.775594 TGTATTACTGTATGCAGACTGACT 57.224 37.500 22.95 10.25 45.28 3.41
3557 3685 1.001641 AGACAGAGGCAATGCACCC 60.002 57.895 7.79 0.00 0.00 4.61
3560 3688 2.036571 CGCAGACAGAGGCAATGCA 61.037 57.895 7.79 0.00 36.70 3.96
3573 3701 1.445518 TGCTTGACAGGTTCGCAGA 59.554 52.632 0.00 0.00 0.00 4.26
3574 3702 1.864862 CTGCTTGACAGGTTCGCAG 59.135 57.895 0.00 0.00 43.19 5.18
3786 3937 3.758554 CCCATCCAAAGTCATCTTCGTTT 59.241 43.478 0.00 0.00 32.90 3.60
3802 4271 1.177401 GTGCTTCTTGGTTCCCATCC 58.823 55.000 0.00 0.00 31.53 3.51
3965 4459 9.361315 GTAACTTTTTCGGTATAATTTGGCATT 57.639 29.630 0.00 0.00 0.00 3.56
3986 4480 1.140252 ACGGCAGGTTCTGTTGTAACT 59.860 47.619 0.00 0.00 33.43 2.24
4000 4494 8.633075 ATGTTTTTCATTATTTCATACGGCAG 57.367 30.769 0.00 0.00 32.08 4.85
4002 4496 9.900264 GAAATGTTTTTCATTATTTCATACGGC 57.100 29.630 0.00 0.00 44.85 5.68
4023 4517 5.926214 TGATTGCAAACAACATGGAAATG 57.074 34.783 6.97 0.00 38.99 2.32
4027 4521 4.523558 TCTGATGATTGCAAACAACATGGA 59.476 37.500 17.73 11.12 38.99 3.41


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.