Multiple sequence alignment - TraesCS4B01G059100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G059100 chr4B 100.000 3490 0 0 1 3490 50401437 50397948 0.000000e+00 6445.0
1 TraesCS4B01G059100 chr4B 96.594 2202 37 15 1 2187 50442211 50444389 0.000000e+00 3616.0
2 TraesCS4B01G059100 chr4B 88.022 359 31 8 2406 2763 50398808 50398461 6.970000e-112 414.0
3 TraesCS4B01G059100 chr4B 88.022 359 31 8 2630 2977 50399032 50398675 6.970000e-112 414.0
4 TraesCS4B01G059100 chr4B 88.525 122 11 2 2385 2506 50453685 50453803 1.010000e-30 145.0
5 TraesCS4B01G059100 chr4B 90.769 65 3 1 2204 2268 50453575 50453636 2.230000e-12 84.2
6 TraesCS4B01G059100 chr3A 90.019 1593 69 30 953 2506 547254582 547256123 0.000000e+00 1978.0
7 TraesCS4B01G059100 chr3A 90.586 1349 70 34 953 2262 547235118 547233788 0.000000e+00 1735.0
8 TraesCS4B01G059100 chr3A 94.173 532 24 3 80 605 547252903 547253433 0.000000e+00 804.0
9 TraesCS4B01G059100 chr3A 90.805 174 11 1 2338 2506 547227986 547227813 9.750000e-56 228.0
10 TraesCS4B01G059100 chr3A 89.796 147 10 3 621 766 547235309 547235167 2.140000e-42 183.0
11 TraesCS4B01G059100 chr3A 87.500 56 2 1 795 845 547235161 547235106 3.760000e-05 60.2
12 TraesCS4B01G059100 chr3B 91.667 1356 33 23 953 2243 144069648 144070988 0.000000e+00 1805.0
13 TraesCS4B01G059100 chr3B 91.538 1359 37 22 953 2246 144058329 144056984 0.000000e+00 1801.0
14 TraesCS4B01G059100 chr3B 92.188 768 25 10 9 766 144059120 144058378 0.000000e+00 1053.0
15 TraesCS4B01G059100 chr3B 84.570 337 15 18 1981 2300 144074552 144074868 2.040000e-77 300.0
16 TraesCS4B01G059100 chr3B 86.275 153 5 6 621 766 144069456 144069599 6.030000e-33 152.0
17 TraesCS4B01G059100 chr3B 89.412 85 5 2 2380 2461 144074867 144074950 1.710000e-18 104.0
18 TraesCS4B01G059100 chr3B 89.286 56 1 1 795 845 144069605 144069660 8.090000e-07 65.8
19 TraesCS4B01G059100 chr3B 87.500 56 2 1 795 845 144058372 144058317 3.760000e-05 60.2
20 TraesCS4B01G059100 chr3D 90.379 1268 53 24 953 2171 92750788 92749541 0.000000e+00 1602.0
21 TraesCS4B01G059100 chr3D 91.247 1211 53 23 1009 2170 92783246 92784452 0.000000e+00 1600.0
22 TraesCS4B01G059100 chr3D 89.527 592 19 15 182 766 92751392 92750837 0.000000e+00 710.0
23 TraesCS4B01G059100 chr3D 86.898 519 62 5 2977 3490 382634072 382634589 8.400000e-161 577.0
24 TraesCS4B01G059100 chr3D 86.765 340 14 10 2166 2498 92787394 92787709 1.990000e-92 350.0
25 TraesCS4B01G059100 chr3D 96.667 150 5 0 61 210 92751555 92751406 2.080000e-62 250.0
26 TraesCS4B01G059100 chr3D 89.308 159 11 4 2168 2324 92749299 92749145 9.880000e-46 195.0
27 TraesCS4B01G059100 chr3D 92.086 139 6 3 628 766 92781794 92781927 1.280000e-44 191.0
28 TraesCS4B01G059100 chr3D 93.976 83 4 1 2424 2506 92738740 92738659 1.320000e-24 124.0
29 TraesCS4B01G059100 chr3D 95.714 70 2 1 2362 2430 92749137 92749068 1.020000e-20 111.0
30 TraesCS4B01G059100 chr3D 88.043 92 7 2 2630 2717 92787622 92787713 4.760000e-19 106.0
31 TraesCS4B01G059100 chr6A 88.760 516 55 3 2978 3490 616621269 616621784 2.290000e-176 628.0
32 TraesCS4B01G059100 chr6A 84.062 640 70 19 1 613 359067718 359068352 3.880000e-164 588.0
33 TraesCS4B01G059100 chr7D 87.984 516 57 5 2978 3490 70364474 70364987 3.850000e-169 604.0
34 TraesCS4B01G059100 chr7D 86.973 522 57 7 2976 3490 635753395 635753912 8.400000e-161 577.0
35 TraesCS4B01G059100 chr7D 86.450 524 58 8 2976 3490 636057922 636057403 2.350000e-156 562.0
36 TraesCS4B01G059100 chr7D 86.434 516 62 7 2978 3489 636871219 636871730 3.040000e-155 558.0
37 TraesCS4B01G059100 chr5B 87.476 519 58 7 2977 3490 19259959 19259443 3.000000e-165 592.0
38 TraesCS4B01G059100 chr5B 86.395 147 15 1 1110 1256 588156780 588156639 4.660000e-34 156.0
39 TraesCS4B01G059100 chr7B 86.990 515 65 2 2978 3490 502007538 502008052 2.340000e-161 579.0
40 TraesCS4B01G059100 chr7B 85.227 88 13 0 311 398 256491403 256491490 1.330000e-14 91.6
41 TraesCS4B01G059100 chr5D 86.796 515 64 4 2980 3490 544911097 544911611 3.910000e-159 571.0
42 TraesCS4B01G059100 chr5D 80.338 473 82 7 1478 1949 480154987 480154525 7.170000e-92 348.0
43 TraesCS4B01G059100 chr5D 88.095 168 17 1 1092 1256 480155401 480155234 2.750000e-46 196.0
44 TraesCS4B01G059100 chr5A 80.462 476 76 10 1478 1949 598637742 598637280 7.170000e-92 348.0
45 TraesCS4B01G059100 chr6B 94.444 36 2 0 854 889 257975138 257975103 4.870000e-04 56.5
46 TraesCS4B01G059100 chr6B 94.444 36 2 0 854 889 333175847 333175882 4.870000e-04 56.5
47 TraesCS4B01G059100 chr1B 94.444 36 2 0 854 889 28052416 28052381 4.870000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G059100 chr4B 50397948 50401437 3489 True 2424.333333 6445 92.014667 1 3490 3 chr4B.!!$R1 3489
1 TraesCS4B01G059100 chr4B 50442211 50444389 2178 False 3616.000000 3616 96.594000 1 2187 1 chr4B.!!$F1 2186
2 TraesCS4B01G059100 chr3A 547252903 547256123 3220 False 1391.000000 1978 92.096000 80 2506 2 chr3A.!!$F1 2426
3 TraesCS4B01G059100 chr3A 547233788 547235309 1521 True 659.400000 1735 89.294000 621 2262 3 chr3A.!!$R2 1641
4 TraesCS4B01G059100 chr3B 144056984 144059120 2136 True 971.400000 1801 90.408667 9 2246 3 chr3B.!!$R1 2237
5 TraesCS4B01G059100 chr3B 144069456 144074950 5494 False 485.360000 1805 88.242000 621 2461 5 chr3B.!!$F1 1840
6 TraesCS4B01G059100 chr3D 382634072 382634589 517 False 577.000000 577 86.898000 2977 3490 1 chr3D.!!$F1 513
7 TraesCS4B01G059100 chr3D 92749068 92751555 2487 True 573.600000 1602 92.319000 61 2430 5 chr3D.!!$R2 2369
8 TraesCS4B01G059100 chr3D 92781794 92787713 5919 False 561.750000 1600 89.535250 628 2717 4 chr3D.!!$F2 2089
9 TraesCS4B01G059100 chr6A 616621269 616621784 515 False 628.000000 628 88.760000 2978 3490 1 chr6A.!!$F2 512
10 TraesCS4B01G059100 chr6A 359067718 359068352 634 False 588.000000 588 84.062000 1 613 1 chr6A.!!$F1 612
11 TraesCS4B01G059100 chr7D 70364474 70364987 513 False 604.000000 604 87.984000 2978 3490 1 chr7D.!!$F1 512
12 TraesCS4B01G059100 chr7D 635753395 635753912 517 False 577.000000 577 86.973000 2976 3490 1 chr7D.!!$F2 514
13 TraesCS4B01G059100 chr7D 636057403 636057922 519 True 562.000000 562 86.450000 2976 3490 1 chr7D.!!$R1 514
14 TraesCS4B01G059100 chr7D 636871219 636871730 511 False 558.000000 558 86.434000 2978 3489 1 chr7D.!!$F3 511
15 TraesCS4B01G059100 chr5B 19259443 19259959 516 True 592.000000 592 87.476000 2977 3490 1 chr5B.!!$R1 513
16 TraesCS4B01G059100 chr7B 502007538 502008052 514 False 579.000000 579 86.990000 2978 3490 1 chr7B.!!$F2 512
17 TraesCS4B01G059100 chr5D 544911097 544911611 514 False 571.000000 571 86.796000 2980 3490 1 chr5D.!!$F1 510
18 TraesCS4B01G059100 chr5D 480154525 480155401 876 True 272.000000 348 84.216500 1092 1949 2 chr5D.!!$R1 857

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
994 3232 0.259938 ATCAACATCCAAGGCCTCCC 59.74 55.0 5.23 0.0 0.0 4.3 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2587 11817 0.040157 ACGCGTCGCTTGTAACACTA 60.04 50.0 16.36 0.0 0.0 2.74 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
30 31 5.163301 ACGCCATAGTCAGTGGAAGATAAAT 60.163 40.000 0.00 0.00 39.12 1.40
387 458 2.888863 CCTCTCCTCGCTTTCGCT 59.111 61.111 0.00 0.00 35.26 4.93
528 607 4.965200 ACAAGGAATATGCCTAGGAGTC 57.035 45.455 14.75 0.00 37.26 3.36
533 612 6.416044 AGGAATATGCCTAGGAGTCTAGAT 57.584 41.667 14.75 0.00 44.35 1.98
717 1433 9.923143 CATTTGGCAGTCATCATTTCATATATT 57.077 29.630 0.00 0.00 0.00 1.28
789 1818 3.786635 ACAATATTCAGAGCGGTCAGTC 58.213 45.455 18.15 0.00 0.00 3.51
790 1819 3.126831 CAATATTCAGAGCGGTCAGTCC 58.873 50.000 18.15 0.00 0.00 3.85
791 1820 2.145397 TATTCAGAGCGGTCAGTCCT 57.855 50.000 18.15 0.00 0.00 3.85
792 1821 0.534412 ATTCAGAGCGGTCAGTCCTG 59.466 55.000 18.15 5.92 0.00 3.86
793 1822 0.539669 TTCAGAGCGGTCAGTCCTGA 60.540 55.000 18.15 8.38 37.24 3.86
994 3232 0.259938 ATCAACATCCAAGGCCTCCC 59.740 55.000 5.23 0.00 0.00 4.30
997 3235 3.023116 CATCCAAGGCCTCCCCCA 61.023 66.667 5.23 0.00 0.00 4.96
998 3236 3.023735 ATCCAAGGCCTCCCCCAC 61.024 66.667 5.23 0.00 0.00 4.61
1068 3346 0.860457 TATCTGCCCTCTCCTGCCTA 59.140 55.000 0.00 0.00 0.00 3.93
1365 3670 0.322456 CTGGGTTCCAAGATGGCGAA 60.322 55.000 0.00 0.00 37.47 4.70
1366 3671 0.331278 TGGGTTCCAAGATGGCGAAT 59.669 50.000 0.00 0.00 37.47 3.34
1367 3672 1.025041 GGGTTCCAAGATGGCGAATC 58.975 55.000 0.00 0.00 37.47 2.52
1368 3673 1.681780 GGGTTCCAAGATGGCGAATCA 60.682 52.381 0.00 0.00 37.47 2.57
1369 3674 2.301346 GGTTCCAAGATGGCGAATCAT 58.699 47.619 0.00 0.00 37.47 2.45
1371 3676 3.882888 GGTTCCAAGATGGCGAATCATTA 59.117 43.478 0.00 0.00 37.47 1.90
1373 3678 4.149511 TCCAAGATGGCGAATCATTACA 57.850 40.909 0.00 0.00 37.47 2.41
1374 3679 3.876914 TCCAAGATGGCGAATCATTACAC 59.123 43.478 0.00 0.00 37.47 2.90
1375 3680 3.627123 CCAAGATGGCGAATCATTACACA 59.373 43.478 0.00 0.00 37.81 3.72
1378 3683 4.707105 AGATGGCGAATCATTACACATCA 58.293 39.130 0.00 0.00 37.81 3.07
1381 3686 5.017294 TGGCGAATCATTACACATCAGTA 57.983 39.130 0.00 0.00 0.00 2.74
1382 3687 4.808895 TGGCGAATCATTACACATCAGTAC 59.191 41.667 0.00 0.00 0.00 2.73
1841 4181 4.160329 TCACCTTCTACTTCATGACCACT 58.840 43.478 0.00 0.00 0.00 4.00
1871 4211 3.244911 CCAAGGTGTTTGATGAGTACCCT 60.245 47.826 0.00 0.00 39.21 4.34
2023 4379 1.091771 CGTGCTGGTGATGATCCCAC 61.092 60.000 6.76 6.76 0.00 4.61
2048 4404 2.364448 AAGAGACCTCCCTCCCGC 60.364 66.667 0.00 0.00 33.76 6.13
2086 8307 2.295629 GCCCGTCTACTTCCAGTATACC 59.704 54.545 0.00 0.00 29.08 2.73
2128 8349 4.451652 GTCCGCTTGCGCTTCTGC 62.452 66.667 9.73 6.69 0.00 4.26
2321 11541 1.092345 GCTCTCTGGCCGTGAAATCC 61.092 60.000 0.00 0.00 0.00 3.01
2446 11676 3.899981 AAGTCGCGATTGCCTGCCA 62.900 57.895 14.06 0.00 38.08 4.92
2467 11697 5.164954 CCATTTTAATTTCGCTCCGGAAAA 58.835 37.500 5.23 3.56 39.19 2.29
2508 11738 2.467566 GGTCCATACCAACGAACTGT 57.532 50.000 0.00 0.00 45.98 3.55
2509 11739 2.774687 GGTCCATACCAACGAACTGTT 58.225 47.619 0.00 0.00 45.98 3.16
2510 11740 3.143728 GGTCCATACCAACGAACTGTTT 58.856 45.455 0.00 0.00 45.98 2.83
2511 11741 4.317488 GGTCCATACCAACGAACTGTTTA 58.683 43.478 0.00 0.00 45.98 2.01
2512 11742 4.390909 GGTCCATACCAACGAACTGTTTAG 59.609 45.833 0.00 0.00 45.98 1.85
2513 11743 5.232463 GTCCATACCAACGAACTGTTTAGA 58.768 41.667 0.00 0.00 39.29 2.10
2514 11744 5.697633 GTCCATACCAACGAACTGTTTAGAA 59.302 40.000 0.00 0.00 39.29 2.10
2515 11745 5.929992 TCCATACCAACGAACTGTTTAGAAG 59.070 40.000 0.00 0.00 39.29 2.85
2516 11746 5.929992 CCATACCAACGAACTGTTTAGAAGA 59.070 40.000 0.00 0.00 39.29 2.87
2517 11747 6.425721 CCATACCAACGAACTGTTTAGAAGAA 59.574 38.462 0.00 0.00 39.29 2.52
2518 11748 7.041644 CCATACCAACGAACTGTTTAGAAGAAA 60.042 37.037 0.00 0.00 39.29 2.52
2519 11749 6.937436 ACCAACGAACTGTTTAGAAGAAAT 57.063 33.333 0.00 0.00 39.29 2.17
2520 11750 7.329588 ACCAACGAACTGTTTAGAAGAAATT 57.670 32.000 0.00 0.00 39.29 1.82
2521 11751 7.193595 ACCAACGAACTGTTTAGAAGAAATTG 58.806 34.615 0.00 0.00 39.29 2.32
2522 11752 7.066525 ACCAACGAACTGTTTAGAAGAAATTGA 59.933 33.333 0.00 0.00 39.29 2.57
2523 11753 7.587757 CCAACGAACTGTTTAGAAGAAATTGAG 59.412 37.037 0.00 0.00 39.29 3.02
2524 11754 8.335356 CAACGAACTGTTTAGAAGAAATTGAGA 58.665 33.333 0.00 0.00 39.29 3.27
2525 11755 8.077836 ACGAACTGTTTAGAAGAAATTGAGAG 57.922 34.615 0.00 0.00 0.00 3.20
2526 11756 7.926555 ACGAACTGTTTAGAAGAAATTGAGAGA 59.073 33.333 0.00 0.00 0.00 3.10
2527 11757 8.431593 CGAACTGTTTAGAAGAAATTGAGAGAG 58.568 37.037 0.00 0.00 0.00 3.20
2528 11758 9.482627 GAACTGTTTAGAAGAAATTGAGAGAGA 57.517 33.333 0.00 0.00 0.00 3.10
2529 11759 9.838339 AACTGTTTAGAAGAAATTGAGAGAGAA 57.162 29.630 0.00 0.00 0.00 2.87
2537 11767 8.814931 AGAAGAAATTGAGAGAGAATTGAGAGA 58.185 33.333 0.00 0.00 0.00 3.10
2538 11768 9.434420 GAAGAAATTGAGAGAGAATTGAGAGAA 57.566 33.333 0.00 0.00 0.00 2.87
2539 11769 9.790344 AAGAAATTGAGAGAGAATTGAGAGAAA 57.210 29.630 0.00 0.00 0.00 2.52
2540 11770 9.439500 AGAAATTGAGAGAGAATTGAGAGAAAG 57.561 33.333 0.00 0.00 0.00 2.62
2541 11771 9.218440 GAAATTGAGAGAGAATTGAGAGAAAGT 57.782 33.333 0.00 0.00 0.00 2.66
2553 11783 9.965824 GAATTGAGAGAAAGTAAAATTGAACCA 57.034 29.630 0.00 0.00 0.00 3.67
2554 11784 9.971922 AATTGAGAGAAAGTAAAATTGAACCAG 57.028 29.630 0.00 0.00 0.00 4.00
2555 11785 6.970484 TGAGAGAAAGTAAAATTGAACCAGC 58.030 36.000 0.00 0.00 0.00 4.85
2556 11786 6.545666 TGAGAGAAAGTAAAATTGAACCAGCA 59.454 34.615 0.00 0.00 0.00 4.41
2557 11787 6.974965 AGAGAAAGTAAAATTGAACCAGCAG 58.025 36.000 0.00 0.00 0.00 4.24
2558 11788 6.547510 AGAGAAAGTAAAATTGAACCAGCAGT 59.452 34.615 0.00 0.00 0.00 4.40
2559 11789 6.739112 AGAAAGTAAAATTGAACCAGCAGTC 58.261 36.000 0.00 0.00 0.00 3.51
2560 11790 5.453567 AAGTAAAATTGAACCAGCAGTCC 57.546 39.130 0.00 0.00 0.00 3.85
2561 11791 4.469657 AGTAAAATTGAACCAGCAGTCCA 58.530 39.130 0.00 0.00 0.00 4.02
2562 11792 4.892934 AGTAAAATTGAACCAGCAGTCCAA 59.107 37.500 0.00 0.00 0.00 3.53
2563 11793 4.751767 AAAATTGAACCAGCAGTCCAAA 57.248 36.364 0.00 0.00 0.00 3.28
2564 11794 4.961438 AAATTGAACCAGCAGTCCAAAT 57.039 36.364 0.00 0.00 0.00 2.32
2565 11795 4.525912 AATTGAACCAGCAGTCCAAATC 57.474 40.909 0.00 0.00 0.00 2.17
2566 11796 2.957402 TGAACCAGCAGTCCAAATCT 57.043 45.000 0.00 0.00 0.00 2.40
2567 11797 3.228188 TGAACCAGCAGTCCAAATCTT 57.772 42.857 0.00 0.00 0.00 2.40
2568 11798 3.565307 TGAACCAGCAGTCCAAATCTTT 58.435 40.909 0.00 0.00 0.00 2.52
2569 11799 4.724399 TGAACCAGCAGTCCAAATCTTTA 58.276 39.130 0.00 0.00 0.00 1.85
2570 11800 4.518970 TGAACCAGCAGTCCAAATCTTTAC 59.481 41.667 0.00 0.00 0.00 2.01
2571 11801 4.373156 ACCAGCAGTCCAAATCTTTACT 57.627 40.909 0.00 0.00 0.00 2.24
2572 11802 4.074970 ACCAGCAGTCCAAATCTTTACTG 58.925 43.478 0.00 0.00 41.78 2.74
2573 11803 4.202461 ACCAGCAGTCCAAATCTTTACTGA 60.202 41.667 5.55 0.00 41.47 3.41
2574 11804 4.946157 CCAGCAGTCCAAATCTTTACTGAT 59.054 41.667 5.55 0.00 41.47 2.90
2575 11805 5.877031 CAGCAGTCCAAATCTTTACTGATG 58.123 41.667 5.34 5.34 46.11 3.07
2576 11806 5.809001 AGCAGTCCAAATCTTTACTGATGA 58.191 37.500 5.55 0.00 41.47 2.92
2577 11807 6.421485 AGCAGTCCAAATCTTTACTGATGAT 58.579 36.000 5.55 0.00 41.47 2.45
2578 11808 6.318144 AGCAGTCCAAATCTTTACTGATGATG 59.682 38.462 5.55 0.00 41.47 3.07
2579 11809 6.094603 GCAGTCCAAATCTTTACTGATGATGT 59.905 38.462 5.55 0.00 41.47 3.06
2580 11810 7.678218 GCAGTCCAAATCTTTACTGATGATGTC 60.678 40.741 5.55 0.00 41.47 3.06
2581 11811 7.551974 CAGTCCAAATCTTTACTGATGATGTCT 59.448 37.037 0.00 0.00 41.47 3.41
2582 11812 8.762645 AGTCCAAATCTTTACTGATGATGTCTA 58.237 33.333 0.00 0.00 0.00 2.59
2583 11813 9.553064 GTCCAAATCTTTACTGATGATGTCTAT 57.447 33.333 0.00 0.00 0.00 1.98
2600 11830 9.244799 TGATGTCTATTTATAGTGTTACAAGCG 57.755 33.333 0.00 0.00 0.00 4.68
2601 11831 9.459640 GATGTCTATTTATAGTGTTACAAGCGA 57.540 33.333 0.00 0.00 0.00 4.93
2602 11832 8.624701 TGTCTATTTATAGTGTTACAAGCGAC 57.375 34.615 0.00 0.00 0.00 5.19
2603 11833 7.430211 TGTCTATTTATAGTGTTACAAGCGACG 59.570 37.037 0.00 0.00 0.00 5.12
2604 11834 4.828291 TTTATAGTGTTACAAGCGACGC 57.172 40.909 13.03 13.03 0.00 5.19
2605 11835 1.265568 ATAGTGTTACAAGCGACGCG 58.734 50.000 15.18 3.53 0.00 6.01
2606 11836 0.040157 TAGTGTTACAAGCGACGCGT 60.040 50.000 13.85 13.85 0.00 6.01
2607 11837 1.154908 GTGTTACAAGCGACGCGTG 60.155 57.895 29.78 29.78 43.17 5.34
2608 11838 2.202008 GTTACAAGCGACGCGTGC 60.202 61.111 30.99 20.88 41.40 5.34
2609 11839 2.658918 TTACAAGCGACGCGTGCA 60.659 55.556 30.99 19.18 41.40 4.57
2610 11840 2.238437 TTACAAGCGACGCGTGCAA 61.238 52.632 30.99 23.58 41.40 4.08
2611 11841 1.763200 TTACAAGCGACGCGTGCAAA 61.763 50.000 30.99 23.03 41.40 3.68
2612 11842 2.419100 TACAAGCGACGCGTGCAAAC 62.419 55.000 30.99 10.09 41.40 2.93
2613 11843 4.643385 AAGCGACGCGTGCAAACG 62.643 61.111 27.05 20.69 33.85 3.60
2622 11852 4.696172 GTGCAAACGACGCGACGG 62.696 66.667 31.73 17.05 37.61 4.79
2624 11854 3.992019 GCAAACGACGCGACGGTT 61.992 61.111 31.73 29.57 44.09 4.44
2626 11856 3.992019 AAACGACGCGACGGTTGC 61.992 61.111 31.22 10.41 41.67 4.17
2627 11857 4.936823 AACGACGCGACGGTTGCT 62.937 61.111 31.73 10.43 37.61 3.91
2628 11858 3.541093 AACGACGCGACGGTTGCTA 62.541 57.895 31.73 0.00 37.61 3.49
2629 11859 2.578713 CGACGCGACGGTTGCTAT 60.579 61.111 22.72 6.27 0.00 2.97
2630 11860 2.156446 CGACGCGACGGTTGCTATT 61.156 57.895 22.72 2.54 0.00 1.73
2631 11861 0.862701 CGACGCGACGGTTGCTATTA 60.863 55.000 22.72 0.00 0.00 0.98
2632 11862 0.844503 GACGCGACGGTTGCTATTAG 59.155 55.000 15.93 4.90 0.00 1.73
2633 11863 1.143969 ACGCGACGGTTGCTATTAGC 61.144 55.000 15.93 8.80 42.82 3.09
2662 11892 8.942669 TTATTTATTATAAGTTGCGATTGCCG 57.057 30.769 1.50 0.00 41.78 5.69
2663 11893 5.994887 TTATTATAAGTTGCGATTGCCGT 57.005 34.783 1.50 0.00 41.78 5.68
2664 11894 4.893424 ATTATAAGTTGCGATTGCCGTT 57.107 36.364 1.50 0.00 41.78 4.44
2665 11895 4.688511 TTATAAGTTGCGATTGCCGTTT 57.311 36.364 1.50 0.00 41.78 3.60
2666 11896 5.798015 TTATAAGTTGCGATTGCCGTTTA 57.202 34.783 1.50 0.00 41.78 2.01
2667 11897 4.688511 ATAAGTTGCGATTGCCGTTTAA 57.311 36.364 1.50 0.00 41.78 1.52
2668 11898 3.569250 AAGTTGCGATTGCCGTTTAAT 57.431 38.095 1.50 0.00 41.78 1.40
2669 11899 2.862512 AGTTGCGATTGCCGTTTAATG 58.137 42.857 1.50 0.00 41.78 1.90
2670 11900 2.227865 AGTTGCGATTGCCGTTTAATGT 59.772 40.909 1.50 0.00 41.78 2.71
2671 11901 2.535934 TGCGATTGCCGTTTAATGTC 57.464 45.000 1.50 0.00 41.78 3.06
2672 11902 1.201976 TGCGATTGCCGTTTAATGTCG 60.202 47.619 1.50 0.00 41.78 4.35
2673 11903 1.452717 CGATTGCCGTTTAATGTCGC 58.547 50.000 0.00 0.00 0.00 5.19
2674 11904 1.062002 CGATTGCCGTTTAATGTCGCT 59.938 47.619 0.00 0.00 0.00 4.93
2675 11905 2.705154 GATTGCCGTTTAATGTCGCTC 58.295 47.619 0.00 0.00 0.00 5.03
2676 11906 0.800012 TTGCCGTTTAATGTCGCTCC 59.200 50.000 0.00 0.00 0.00 4.70
2677 11907 1.347221 GCCGTTTAATGTCGCTCCG 59.653 57.895 0.00 0.00 0.00 4.63
2678 11908 2.003672 CCGTTTAATGTCGCTCCGG 58.996 57.895 0.00 0.00 0.00 5.14
2679 11909 0.458889 CCGTTTAATGTCGCTCCGGA 60.459 55.000 2.93 2.93 36.12 5.14
2680 11910 1.352114 CGTTTAATGTCGCTCCGGAA 58.648 50.000 5.23 0.00 0.00 4.30
2681 11911 1.727880 CGTTTAATGTCGCTCCGGAAA 59.272 47.619 5.23 0.00 0.00 3.13
2682 11912 2.222729 CGTTTAATGTCGCTCCGGAAAG 60.223 50.000 5.23 1.97 0.00 2.62
2683 11913 2.997986 GTTTAATGTCGCTCCGGAAAGA 59.002 45.455 5.23 4.84 0.00 2.52
2684 11914 2.579207 TAATGTCGCTCCGGAAAGAG 57.421 50.000 5.23 0.00 36.92 2.85
2685 11915 0.895530 AATGTCGCTCCGGAAAGAGA 59.104 50.000 5.23 6.88 35.82 3.10
2686 11916 0.895530 ATGTCGCTCCGGAAAGAGAA 59.104 50.000 5.23 0.00 35.82 2.87
2687 11917 0.895530 TGTCGCTCCGGAAAGAGAAT 59.104 50.000 5.23 0.00 35.82 2.40
2688 11918 1.275291 TGTCGCTCCGGAAAGAGAATT 59.725 47.619 5.23 0.00 35.82 2.17
2689 11919 2.494471 TGTCGCTCCGGAAAGAGAATTA 59.506 45.455 5.23 0.00 35.82 1.40
2690 11920 3.056393 TGTCGCTCCGGAAAGAGAATTAA 60.056 43.478 5.23 0.00 35.82 1.40
2691 11921 3.930848 GTCGCTCCGGAAAGAGAATTAAA 59.069 43.478 5.23 0.00 35.82 1.52
2692 11922 4.033014 GTCGCTCCGGAAAGAGAATTAAAG 59.967 45.833 5.23 0.00 35.82 1.85
2693 11923 3.309954 CGCTCCGGAAAGAGAATTAAAGG 59.690 47.826 5.23 0.00 35.82 3.11
2694 11924 4.514401 GCTCCGGAAAGAGAATTAAAGGA 58.486 43.478 5.23 0.00 35.82 3.36
2695 11925 4.333095 GCTCCGGAAAGAGAATTAAAGGAC 59.667 45.833 5.23 0.00 35.82 3.85
2696 11926 4.501071 TCCGGAAAGAGAATTAAAGGACG 58.499 43.478 0.00 0.00 0.00 4.79
2697 11927 4.020839 TCCGGAAAGAGAATTAAAGGACGT 60.021 41.667 0.00 0.00 0.00 4.34
2698 11928 4.092968 CCGGAAAGAGAATTAAAGGACGTG 59.907 45.833 0.00 0.00 0.00 4.49
2699 11929 4.092968 CGGAAAGAGAATTAAAGGACGTGG 59.907 45.833 0.00 0.00 0.00 4.94
2700 11930 5.001874 GGAAAGAGAATTAAAGGACGTGGT 58.998 41.667 0.00 0.00 0.00 4.16
2701 11931 5.472478 GGAAAGAGAATTAAAGGACGTGGTT 59.528 40.000 0.00 0.00 0.00 3.67
2702 11932 6.348295 GGAAAGAGAATTAAAGGACGTGGTTC 60.348 42.308 0.00 0.00 0.00 3.62
2703 11933 4.243270 AGAGAATTAAAGGACGTGGTTCG 58.757 43.478 0.00 0.00 46.00 3.95
2704 11934 3.332034 AGAATTAAAGGACGTGGTTCGG 58.668 45.455 0.00 0.00 44.69 4.30
2705 11935 2.103537 ATTAAAGGACGTGGTTCGGG 57.896 50.000 0.00 0.00 44.69 5.14
2706 11936 0.758123 TTAAAGGACGTGGTTCGGGT 59.242 50.000 0.00 0.00 44.69 5.28
2707 11937 0.318120 TAAAGGACGTGGTTCGGGTC 59.682 55.000 0.00 0.00 44.69 4.46
2710 11940 2.660802 GACGTGGTTCGGGTCCAT 59.339 61.111 0.00 0.00 44.69 3.41
2711 11941 1.892338 GACGTGGTTCGGGTCCATA 59.108 57.895 0.00 0.00 44.69 2.74
2712 11942 0.459063 GACGTGGTTCGGGTCCATAC 60.459 60.000 0.00 0.00 44.69 2.39
2713 11943 1.517694 CGTGGTTCGGGTCCATACG 60.518 63.158 0.00 0.00 37.30 3.06
2714 11944 1.892338 GTGGTTCGGGTCCATACGA 59.108 57.895 0.00 0.00 37.30 3.43
2715 11945 0.247185 GTGGTTCGGGTCCATACGAA 59.753 55.000 0.00 0.00 45.61 3.85
2718 11948 3.422122 TTCGGGTCCATACGAAACG 57.578 52.632 0.00 0.00 44.93 3.60
2719 11949 0.887247 TTCGGGTCCATACGAAACGA 59.113 50.000 0.00 0.00 44.93 3.85
2720 11950 0.452987 TCGGGTCCATACGAAACGAG 59.547 55.000 0.00 0.00 36.01 4.18
2721 11951 1.143969 CGGGTCCATACGAAACGAGC 61.144 60.000 0.00 0.00 0.00 5.03
2722 11952 0.175073 GGGTCCATACGAAACGAGCT 59.825 55.000 0.00 0.00 0.00 4.09
2723 11953 1.278238 GGTCCATACGAAACGAGCTG 58.722 55.000 0.00 0.00 0.00 4.24
2724 11954 1.403780 GGTCCATACGAAACGAGCTGT 60.404 52.381 0.00 0.00 0.00 4.40
2725 11955 2.334838 GTCCATACGAAACGAGCTGTT 58.665 47.619 0.00 0.00 44.59 3.16
2737 11967 5.517037 AACGAGCTGTTTAGAAGAAATCG 57.483 39.130 0.00 0.00 37.59 3.34
2738 11968 4.806330 ACGAGCTGTTTAGAAGAAATCGA 58.194 39.130 0.00 0.00 0.00 3.59
2739 11969 4.859798 ACGAGCTGTTTAGAAGAAATCGAG 59.140 41.667 0.00 0.00 0.00 4.04
2740 11970 5.096169 CGAGCTGTTTAGAAGAAATCGAGA 58.904 41.667 0.00 0.00 0.00 4.04
2741 11971 5.229052 CGAGCTGTTTAGAAGAAATCGAGAG 59.771 44.000 0.00 0.00 0.00 3.20
2757 11987 4.594970 TCGAGAGAGGATCAAGAGAAAGT 58.405 43.478 0.00 0.00 37.82 2.66
2758 11988 5.746284 TCGAGAGAGGATCAAGAGAAAGTA 58.254 41.667 0.00 0.00 37.82 2.24
2759 11989 6.181190 TCGAGAGAGGATCAAGAGAAAGTAA 58.819 40.000 0.00 0.00 37.82 2.24
2760 11990 6.659668 TCGAGAGAGGATCAAGAGAAAGTAAA 59.340 38.462 0.00 0.00 37.82 2.01
2761 11991 7.176865 TCGAGAGAGGATCAAGAGAAAGTAAAA 59.823 37.037 0.00 0.00 37.82 1.52
2762 11992 7.815068 CGAGAGAGGATCAAGAGAAAGTAAAAA 59.185 37.037 0.00 0.00 37.82 1.94
2763 11993 9.665719 GAGAGAGGATCAAGAGAAAGTAAAAAT 57.334 33.333 0.00 0.00 37.82 1.82
2764 11994 9.447157 AGAGAGGATCAAGAGAAAGTAAAAATG 57.553 33.333 0.00 0.00 37.82 2.32
2765 11995 9.442047 GAGAGGATCAAGAGAAAGTAAAAATGA 57.558 33.333 0.00 0.00 37.82 2.57
2766 11996 9.799106 AGAGGATCAAGAGAAAGTAAAAATGAA 57.201 29.630 0.00 0.00 37.82 2.57
2767 11997 9.833182 GAGGATCAAGAGAAAGTAAAAATGAAC 57.167 33.333 0.00 0.00 33.17 3.18
2768 11998 8.797438 AGGATCAAGAGAAAGTAAAAATGAACC 58.203 33.333 0.00 0.00 0.00 3.62
2769 11999 8.576442 GGATCAAGAGAAAGTAAAAATGAACCA 58.424 33.333 0.00 0.00 31.23 3.67
2770 12000 9.617975 GATCAAGAGAAAGTAAAAATGAACCAG 57.382 33.333 0.00 0.00 0.00 4.00
2771 12001 7.425606 TCAAGAGAAAGTAAAAATGAACCAGC 58.574 34.615 0.00 0.00 0.00 4.85
2772 12002 6.959639 AGAGAAAGTAAAAATGAACCAGCA 57.040 33.333 0.00 0.00 0.00 4.41
2773 12003 6.974965 AGAGAAAGTAAAAATGAACCAGCAG 58.025 36.000 0.00 0.00 0.00 4.24
2774 12004 6.547510 AGAGAAAGTAAAAATGAACCAGCAGT 59.452 34.615 0.00 0.00 0.00 4.40
2775 12005 6.739112 AGAAAGTAAAAATGAACCAGCAGTC 58.261 36.000 0.00 0.00 0.00 3.51
2776 12006 5.453567 AAGTAAAAATGAACCAGCAGTCC 57.546 39.130 0.00 0.00 0.00 3.85
2777 12007 4.469657 AGTAAAAATGAACCAGCAGTCCA 58.530 39.130 0.00 0.00 0.00 4.02
2778 12008 4.892934 AGTAAAAATGAACCAGCAGTCCAA 59.107 37.500 0.00 0.00 0.00 3.53
2779 12009 4.751767 AAAAATGAACCAGCAGTCCAAA 57.248 36.364 0.00 0.00 0.00 3.28
2780 12010 4.961438 AAAATGAACCAGCAGTCCAAAT 57.039 36.364 0.00 0.00 0.00 2.32
2781 12011 4.525912 AAATGAACCAGCAGTCCAAATC 57.474 40.909 0.00 0.00 0.00 2.17
2782 12012 2.957402 TGAACCAGCAGTCCAAATCT 57.043 45.000 0.00 0.00 0.00 2.40
2783 12013 3.228188 TGAACCAGCAGTCCAAATCTT 57.772 42.857 0.00 0.00 0.00 2.40
2784 12014 3.565307 TGAACCAGCAGTCCAAATCTTT 58.435 40.909 0.00 0.00 0.00 2.52
2785 12015 4.724399 TGAACCAGCAGTCCAAATCTTTA 58.276 39.130 0.00 0.00 0.00 1.85
2786 12016 5.324409 TGAACCAGCAGTCCAAATCTTTAT 58.676 37.500 0.00 0.00 0.00 1.40
2787 12017 5.774690 TGAACCAGCAGTCCAAATCTTTATT 59.225 36.000 0.00 0.00 0.00 1.40
2788 12018 5.649782 ACCAGCAGTCCAAATCTTTATTG 57.350 39.130 0.00 0.00 0.00 1.90
2790 12020 4.463891 CCAGCAGTCCAAATCTTTATTGGT 59.536 41.667 5.31 0.00 46.05 3.67
2791 12021 5.404946 CAGCAGTCCAAATCTTTATTGGTG 58.595 41.667 5.31 0.00 46.05 4.17
2792 12022 5.183713 CAGCAGTCCAAATCTTTATTGGTGA 59.816 40.000 5.31 0.00 46.05 4.02
2793 12023 5.954150 AGCAGTCCAAATCTTTATTGGTGAT 59.046 36.000 5.31 0.00 46.05 3.06
2794 12024 6.038356 GCAGTCCAAATCTTTATTGGTGATG 58.962 40.000 5.31 4.63 46.05 3.07
2795 12025 6.350445 GCAGTCCAAATCTTTATTGGTGATGT 60.350 38.462 5.31 0.00 46.05 3.06
2796 12026 7.253422 CAGTCCAAATCTTTATTGGTGATGTC 58.747 38.462 5.31 0.00 46.05 3.06
2797 12027 7.121759 CAGTCCAAATCTTTATTGGTGATGTCT 59.878 37.037 5.31 0.00 46.05 3.41
2798 12028 8.328758 AGTCCAAATCTTTATTGGTGATGTCTA 58.671 33.333 5.31 0.00 46.05 2.59
2799 12029 9.125026 GTCCAAATCTTTATTGGTGATGTCTAT 57.875 33.333 5.31 0.00 46.05 1.98
2800 12030 9.699410 TCCAAATCTTTATTGGTGATGTCTATT 57.301 29.630 5.31 0.00 46.05 1.73
2819 12049 8.748582 TGTCTATTTATATTGTTACAAGCGACG 58.251 33.333 3.63 0.00 0.00 5.12
2820 12050 7.734726 GTCTATTTATATTGTTACAAGCGACGC 59.265 37.037 13.03 13.03 0.00 5.19
2821 12051 2.990774 ATATTGTTACAAGCGACGCG 57.009 45.000 15.18 3.53 0.00 6.01
2822 12052 1.700523 TATTGTTACAAGCGACGCGT 58.299 45.000 13.85 13.85 0.00 6.01
2823 12053 0.162933 ATTGTTACAAGCGACGCGTG 59.837 50.000 29.78 29.78 43.17 5.34
2824 12054 2.202008 GTTACAAGCGACGCGTGC 60.202 61.111 30.99 20.88 41.40 5.34
2825 12055 2.658918 TTACAAGCGACGCGTGCA 60.659 55.556 30.99 19.18 41.40 4.57
2826 12056 2.238437 TTACAAGCGACGCGTGCAA 61.238 52.632 30.99 23.58 41.40 4.08
2827 12057 1.763200 TTACAAGCGACGCGTGCAAA 61.763 50.000 30.99 23.03 41.40 3.68
2828 12058 2.419100 TACAAGCGACGCGTGCAAAC 62.419 55.000 30.99 10.09 41.40 2.93
2829 12059 4.643385 AAGCGACGCGTGCAAACG 62.643 61.111 27.05 20.69 33.85 3.60
2832 12062 3.978764 CGACGCGTGCAAACGACA 61.979 61.111 20.70 0.00 34.64 4.35
2833 12063 2.321740 GACGCGTGCAAACGACAA 59.678 55.556 20.70 0.00 34.64 3.18
2834 12064 1.717728 GACGCGTGCAAACGACAAG 60.718 57.895 20.70 0.00 34.64 3.16
2835 12065 2.084763 GACGCGTGCAAACGACAAGA 62.085 55.000 20.70 0.00 34.64 3.02
2836 12066 1.717728 CGCGTGCAAACGACAAGAC 60.718 57.895 0.00 0.00 34.64 3.01
2837 12067 1.717728 GCGTGCAAACGACAAGACG 60.718 57.895 1.87 0.00 39.31 4.18
2838 12068 1.083657 CGTGCAAACGACAAGACGG 60.084 57.895 0.00 0.00 37.61 4.79
2839 12069 1.758319 CGTGCAAACGACAAGACGGT 61.758 55.000 0.00 0.00 37.61 4.83
2840 12070 0.375803 GTGCAAACGACAAGACGGTT 59.624 50.000 0.00 0.00 44.09 4.44
2843 12073 3.074594 AAACGACAAGACGGTTGCT 57.925 47.368 0.00 0.00 41.67 3.91
2844 12074 2.228138 AAACGACAAGACGGTTGCTA 57.772 45.000 0.00 0.00 41.67 3.49
2845 12075 2.450609 AACGACAAGACGGTTGCTAT 57.549 45.000 0.00 0.00 37.61 2.97
2846 12076 2.450609 ACGACAAGACGGTTGCTATT 57.549 45.000 0.00 0.00 37.61 1.73
2847 12077 3.581024 ACGACAAGACGGTTGCTATTA 57.419 42.857 0.00 0.00 37.61 0.98
2848 12078 3.508762 ACGACAAGACGGTTGCTATTAG 58.491 45.455 0.00 0.00 37.61 1.73
2849 12079 2.281762 CGACAAGACGGTTGCTATTAGC 59.718 50.000 8.80 8.80 42.82 3.09
2850 12080 6.637795 ACGACAAGACGGTTGCTATTAGCA 62.638 45.833 14.33 14.33 42.83 3.49
2872 12102 8.630054 AGCAGTTTATTTATTACAGGTTGTGA 57.370 30.769 0.00 0.00 0.00 3.58
2873 12103 9.243105 AGCAGTTTATTTATTACAGGTTGTGAT 57.757 29.630 0.00 0.00 31.27 3.06
2874 12104 9.855021 GCAGTTTATTTATTACAGGTTGTGATT 57.145 29.630 0.00 0.00 29.09 2.57
2876 12106 9.855021 AGTTTATTTATTACAGGTTGTGATTGC 57.145 29.630 0.00 0.00 29.09 3.56
2877 12107 9.083080 GTTTATTTATTACAGGTTGTGATTGCC 57.917 33.333 0.00 0.00 29.09 4.52
2878 12108 4.955925 TTATTACAGGTTGTGATTGCCG 57.044 40.909 0.00 0.00 29.09 5.69
2879 12109 2.264005 TTACAGGTTGTGATTGCCGT 57.736 45.000 0.00 0.00 0.00 5.68
2880 12110 2.264005 TACAGGTTGTGATTGCCGTT 57.736 45.000 0.00 0.00 0.00 4.44
2881 12111 1.398692 ACAGGTTGTGATTGCCGTTT 58.601 45.000 0.00 0.00 0.00 3.60
2882 12112 2.577700 ACAGGTTGTGATTGCCGTTTA 58.422 42.857 0.00 0.00 0.00 2.01
2883 12113 2.952978 ACAGGTTGTGATTGCCGTTTAA 59.047 40.909 0.00 0.00 0.00 1.52
2884 12114 3.572255 ACAGGTTGTGATTGCCGTTTAAT 59.428 39.130 0.00 0.00 0.00 1.40
2885 12115 4.038642 ACAGGTTGTGATTGCCGTTTAATT 59.961 37.500 0.00 0.00 0.00 1.40
2886 12116 4.987912 CAGGTTGTGATTGCCGTTTAATTT 59.012 37.500 0.00 0.00 0.00 1.82
2887 12117 5.118510 CAGGTTGTGATTGCCGTTTAATTTC 59.881 40.000 0.00 0.00 0.00 2.17
2888 12118 4.387559 GGTTGTGATTGCCGTTTAATTTCC 59.612 41.667 0.00 0.00 0.00 3.13
2889 12119 4.181309 TGTGATTGCCGTTTAATTTCCC 57.819 40.909 0.00 0.00 0.00 3.97
2890 12120 3.829601 TGTGATTGCCGTTTAATTTCCCT 59.170 39.130 0.00 0.00 0.00 4.20
2891 12121 4.082463 TGTGATTGCCGTTTAATTTCCCTC 60.082 41.667 0.00 0.00 0.00 4.30
2892 12122 3.445805 TGATTGCCGTTTAATTTCCCTCC 59.554 43.478 0.00 0.00 0.00 4.30
2893 12123 2.588464 TGCCGTTTAATTTCCCTCCA 57.412 45.000 0.00 0.00 0.00 3.86
2894 12124 2.442413 TGCCGTTTAATTTCCCTCCAG 58.558 47.619 0.00 0.00 0.00 3.86
2895 12125 2.040545 TGCCGTTTAATTTCCCTCCAGA 59.959 45.455 0.00 0.00 0.00 3.86
2896 12126 3.086282 GCCGTTTAATTTCCCTCCAGAA 58.914 45.455 0.00 0.00 0.00 3.02
2897 12127 3.508402 GCCGTTTAATTTCCCTCCAGAAA 59.492 43.478 0.00 0.00 39.92 2.52
2898 12128 4.380550 GCCGTTTAATTTCCCTCCAGAAAG 60.381 45.833 0.00 0.00 39.04 2.62
2899 12129 5.007682 CCGTTTAATTTCCCTCCAGAAAGA 58.992 41.667 0.00 0.00 39.04 2.52
2900 12130 5.123979 CCGTTTAATTTCCCTCCAGAAAGAG 59.876 44.000 0.00 0.00 39.04 2.85
2901 12131 5.938125 CGTTTAATTTCCCTCCAGAAAGAGA 59.062 40.000 0.00 0.00 39.04 3.10
2902 12132 6.430000 CGTTTAATTTCCCTCCAGAAAGAGAA 59.570 38.462 0.00 0.00 39.04 2.87
2903 12133 7.040686 CGTTTAATTTCCCTCCAGAAAGAGAAA 60.041 37.037 0.00 0.00 39.04 2.52
2904 12134 8.807118 GTTTAATTTCCCTCCAGAAAGAGAAAT 58.193 33.333 0.00 0.00 39.04 2.17
2907 12137 8.586879 AATTTCCCTCCAGAAAGAGAAATAAG 57.413 34.615 0.00 0.00 39.04 1.73
2908 12138 5.700402 TCCCTCCAGAAAGAGAAATAAGG 57.300 43.478 0.00 0.00 35.82 2.69
2909 12139 5.350547 TCCCTCCAGAAAGAGAAATAAGGA 58.649 41.667 0.00 0.00 35.82 3.36
2910 12140 5.189934 TCCCTCCAGAAAGAGAAATAAGGAC 59.810 44.000 0.00 0.00 35.82 3.85
2911 12141 5.112686 CCTCCAGAAAGAGAAATAAGGACG 58.887 45.833 0.00 0.00 35.82 4.79
2912 12142 5.337652 CCTCCAGAAAGAGAAATAAGGACGT 60.338 44.000 0.00 0.00 35.82 4.34
2913 12143 5.479306 TCCAGAAAGAGAAATAAGGACGTG 58.521 41.667 0.00 0.00 0.00 4.49
2914 12144 5.011738 TCCAGAAAGAGAAATAAGGACGTGT 59.988 40.000 0.00 0.00 0.00 4.49
2915 12145 5.701290 CCAGAAAGAGAAATAAGGACGTGTT 59.299 40.000 0.00 0.00 0.00 3.32
2916 12146 6.204882 CCAGAAAGAGAAATAAGGACGTGTTT 59.795 38.462 0.00 0.00 0.00 2.83
2917 12147 7.291567 CAGAAAGAGAAATAAGGACGTGTTTC 58.708 38.462 0.00 0.00 0.00 2.78
2918 12148 5.840940 AAGAGAAATAAGGACGTGTTTCG 57.159 39.130 0.00 0.00 46.00 3.46
2919 12149 4.243270 AGAGAAATAAGGACGTGTTTCGG 58.757 43.478 0.00 0.00 44.69 4.30
2920 12150 3.332034 AGAAATAAGGACGTGTTTCGGG 58.668 45.455 0.00 0.00 44.69 5.14
2921 12151 2.845363 AATAAGGACGTGTTTCGGGT 57.155 45.000 0.00 0.00 44.69 5.28
2922 12152 2.375173 ATAAGGACGTGTTTCGGGTC 57.625 50.000 0.00 0.00 44.69 4.46
2925 12155 4.687464 GACGTGTTTCGGGTCCAT 57.313 55.556 0.00 0.00 44.69 3.41
2926 12156 3.818586 GACGTGTTTCGGGTCCATA 57.181 52.632 0.00 0.00 44.69 2.74
2927 12157 1.353076 GACGTGTTTCGGGTCCATAC 58.647 55.000 0.00 0.00 44.69 2.39
2928 12158 0.971386 ACGTGTTTCGGGTCCATACT 59.029 50.000 0.00 0.00 44.69 2.12
2929 12159 1.337447 ACGTGTTTCGGGTCCATACTG 60.337 52.381 0.00 0.00 44.69 2.74
2930 12160 1.067425 CGTGTTTCGGGTCCATACTGA 60.067 52.381 0.00 0.00 35.71 3.41
2931 12161 2.344025 GTGTTTCGGGTCCATACTGAC 58.656 52.381 0.00 0.00 34.42 3.51
2932 12162 1.067425 TGTTTCGGGTCCATACTGACG 60.067 52.381 0.00 0.00 36.07 4.35
2933 12163 1.203052 GTTTCGGGTCCATACTGACGA 59.797 52.381 0.00 0.00 36.07 4.20
2934 12164 1.548081 TTCGGGTCCATACTGACGAA 58.452 50.000 0.00 0.00 36.07 3.85
2935 12165 1.771565 TCGGGTCCATACTGACGAAT 58.228 50.000 0.00 0.00 36.07 3.34
2936 12166 2.934887 TCGGGTCCATACTGACGAATA 58.065 47.619 0.00 0.00 36.07 1.75
2937 12167 2.882761 TCGGGTCCATACTGACGAATAG 59.117 50.000 0.00 0.00 36.07 1.73
2938 12168 2.621998 CGGGTCCATACTGACGAATAGT 59.378 50.000 0.00 0.00 36.07 2.12
2939 12169 3.067742 CGGGTCCATACTGACGAATAGTT 59.932 47.826 0.00 0.00 36.07 2.24
2940 12170 4.441079 CGGGTCCATACTGACGAATAGTTT 60.441 45.833 0.00 0.00 36.07 2.66
2941 12171 5.048507 GGGTCCATACTGACGAATAGTTTC 58.951 45.833 0.00 0.00 36.07 2.78
2969 12199 3.545366 TCGAGAGAGGATCGAGAGAAA 57.455 47.619 0.00 0.00 43.79 2.52
2970 12200 3.462982 TCGAGAGAGGATCGAGAGAAAG 58.537 50.000 0.00 0.00 43.79 2.62
2971 12201 3.118555 TCGAGAGAGGATCGAGAGAAAGT 60.119 47.826 0.00 0.00 43.79 2.66
2972 12202 4.099727 TCGAGAGAGGATCGAGAGAAAGTA 59.900 45.833 0.00 0.00 43.79 2.24
2973 12203 5.395435 TCGAGAGAGGATCGAGAGAAAGTAA 60.395 44.000 0.00 0.00 43.79 2.24
2974 12204 6.852704 TCGAGAGAGGATCGAGAGAAAGTAAA 60.853 42.308 0.00 0.00 43.79 2.01
3003 12233 4.729868 AGTAGAAAACATGGCTTTGGTCT 58.270 39.130 0.00 0.00 0.00 3.85
3068 12300 4.195334 ATGGGGCATCGGTCCTGC 62.195 66.667 0.00 0.00 39.39 4.85
3071 12303 2.044946 GGGCATCGGTCCTGCTTT 60.045 61.111 3.33 0.00 39.60 3.51
3085 12318 2.036256 CTTTGTGAGGCCAGGGGG 59.964 66.667 5.01 0.00 37.18 5.40
3192 12426 1.215173 CTCCTGGCCCATAACCATTGA 59.785 52.381 0.00 0.00 36.36 2.57
3205 12439 1.710244 ACCATTGATCCCAGTTGGTGA 59.290 47.619 0.00 0.00 38.44 4.02
3225 12459 1.633432 ACTGGAATCGGGACCAAATGA 59.367 47.619 0.00 0.00 35.67 2.57
3259 12493 0.250597 GGTTCTAGCCACAAACCGGT 60.251 55.000 0.00 0.00 33.68 5.28
3362 12600 1.694150 TGTTGTGCTCTAGCTCACCTT 59.306 47.619 6.24 0.00 43.16 3.50
3368 12606 3.634448 GTGCTCTAGCTCACCTTCTATGA 59.366 47.826 3.26 0.00 42.66 2.15
3392 12630 2.777094 TGAGGTGTTCGATGAAATGCA 58.223 42.857 0.00 0.00 0.00 3.96
3393 12631 3.346315 TGAGGTGTTCGATGAAATGCAT 58.654 40.909 0.00 0.00 40.77 3.96
3463 12701 7.461749 TCCATTTTCCTCAAGATTTGTCTAGT 58.538 34.615 0.00 0.00 0.00 2.57
3471 12709 6.486657 CCTCAAGATTTGTCTAGTTTTGGTGA 59.513 38.462 0.00 0.00 0.00 4.02
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
197 217 3.202818 AGATGACTTCATATGGCAACCCA 59.797 43.478 2.13 0.00 40.33 4.51
717 1433 8.680903 TCTGCTTTATTTCATTTTTGCCAAAAA 58.319 25.926 16.94 16.94 43.76 1.94
722 1438 7.838771 AGATCTGCTTTATTTCATTTTTGCC 57.161 32.000 0.00 0.00 0.00 4.52
723 1439 9.793252 TCTAGATCTGCTTTATTTCATTTTTGC 57.207 29.630 5.18 0.00 0.00 3.68
789 1818 4.082026 CCAAGGAAATAACAAGGCTTCAGG 60.082 45.833 0.00 0.00 0.00 3.86
790 1819 4.082026 CCCAAGGAAATAACAAGGCTTCAG 60.082 45.833 0.00 0.00 0.00 3.02
791 1820 3.831911 CCCAAGGAAATAACAAGGCTTCA 59.168 43.478 0.00 0.00 0.00 3.02
792 1821 3.368427 GCCCAAGGAAATAACAAGGCTTC 60.368 47.826 0.00 0.00 36.22 3.86
793 1822 2.567169 GCCCAAGGAAATAACAAGGCTT 59.433 45.455 0.00 0.00 36.22 4.35
1002 3240 2.899838 CGTGTGTGTGTGTGGGGG 60.900 66.667 0.00 0.00 0.00 5.40
1004 3242 1.227409 TAGCGTGTGTGTGTGTGGG 60.227 57.895 0.00 0.00 0.00 4.61
1068 3346 5.537300 ACTTCACGTTATGGATGCTCTAT 57.463 39.130 0.00 0.00 0.00 1.98
1365 3670 7.330262 TGATGTGTGTACTGATGTGTAATGAT 58.670 34.615 0.00 0.00 0.00 2.45
1366 3671 6.696411 TGATGTGTGTACTGATGTGTAATGA 58.304 36.000 0.00 0.00 0.00 2.57
1367 3672 6.591448 ACTGATGTGTGTACTGATGTGTAATG 59.409 38.462 0.00 0.00 0.00 1.90
1368 3673 6.701340 ACTGATGTGTGTACTGATGTGTAAT 58.299 36.000 0.00 0.00 0.00 1.89
1369 3674 6.096673 ACTGATGTGTGTACTGATGTGTAA 57.903 37.500 0.00 0.00 0.00 2.41
1371 3676 4.607293 ACTGATGTGTGTACTGATGTGT 57.393 40.909 0.00 0.00 0.00 3.72
1373 3678 5.010617 TGTGTACTGATGTGTGTACTGATGT 59.989 40.000 0.00 0.00 39.57 3.06
1374 3679 5.346011 GTGTGTACTGATGTGTGTACTGATG 59.654 44.000 0.00 0.00 39.57 3.07
1375 3680 5.470368 GTGTGTACTGATGTGTGTACTGAT 58.530 41.667 0.00 0.00 39.57 2.90
1378 3683 3.566742 TCGTGTGTACTGATGTGTGTACT 59.433 43.478 0.00 0.00 39.57 2.73
1381 3686 3.446310 TTCGTGTGTACTGATGTGTGT 57.554 42.857 0.00 0.00 0.00 3.72
1382 3687 3.987220 TGATTCGTGTGTACTGATGTGTG 59.013 43.478 0.00 0.00 0.00 3.82
1841 4181 0.881159 CAAACACCTTGGCGTACGGA 60.881 55.000 18.39 0.00 0.00 4.69
1871 4211 1.497309 CCCACCAGGCCTTCACCTTA 61.497 60.000 0.00 0.00 38.26 2.69
2023 4379 3.023832 GAGGGAGGTCTCTTCTCTTGAG 58.976 54.545 11.50 0.00 31.99 3.02
2048 4404 1.524621 GCAGATGATCACCCACCCG 60.525 63.158 0.00 0.00 0.00 5.28
2086 8307 1.334419 CGTGCTGCTGAAACTGAAAGG 60.334 52.381 0.00 0.00 39.30 3.11
2140 8361 4.327087 GCACAAATTAAAGCAAGGAATCCG 59.673 41.667 0.00 0.00 0.00 4.18
2271 11487 4.219944 ACACACGTATCCAAGATGTAGTGT 59.780 41.667 0.00 0.00 41.52 3.55
2272 11488 4.562789 CACACACGTATCCAAGATGTAGTG 59.437 45.833 0.00 0.00 34.85 2.74
2321 11541 2.681344 GGTGGTTTGGCGTATTTCCTAG 59.319 50.000 0.00 0.00 0.00 3.02
2446 11676 6.683715 TCTTTTTCCGGAGCGAAATTAAAAT 58.316 32.000 3.34 0.00 32.00 1.82
2467 11697 4.214758 CCCGAAACACGTCCTTTAATTCTT 59.785 41.667 0.00 0.00 40.78 2.52
2494 11724 8.617290 ATTTCTTCTAAACAGTTCGTTGGTAT 57.383 30.769 0.00 0.00 38.07 2.73
2511 11741 8.814931 TCTCTCAATTCTCTCTCAATTTCTTCT 58.185 33.333 0.00 0.00 0.00 2.85
2512 11742 9.434420 TTCTCTCAATTCTCTCTCAATTTCTTC 57.566 33.333 0.00 0.00 0.00 2.87
2513 11743 9.790344 TTTCTCTCAATTCTCTCTCAATTTCTT 57.210 29.630 0.00 0.00 0.00 2.52
2514 11744 9.439500 CTTTCTCTCAATTCTCTCTCAATTTCT 57.561 33.333 0.00 0.00 0.00 2.52
2515 11745 9.218440 ACTTTCTCTCAATTCTCTCTCAATTTC 57.782 33.333 0.00 0.00 0.00 2.17
2527 11757 9.965824 TGGTTCAATTTTACTTTCTCTCAATTC 57.034 29.630 0.00 0.00 0.00 2.17
2528 11758 9.971922 CTGGTTCAATTTTACTTTCTCTCAATT 57.028 29.630 0.00 0.00 0.00 2.32
2529 11759 8.084684 GCTGGTTCAATTTTACTTTCTCTCAAT 58.915 33.333 0.00 0.00 0.00 2.57
2530 11760 7.068103 TGCTGGTTCAATTTTACTTTCTCTCAA 59.932 33.333 0.00 0.00 0.00 3.02
2531 11761 6.545666 TGCTGGTTCAATTTTACTTTCTCTCA 59.454 34.615 0.00 0.00 0.00 3.27
2532 11762 6.970484 TGCTGGTTCAATTTTACTTTCTCTC 58.030 36.000 0.00 0.00 0.00 3.20
2533 11763 6.547510 ACTGCTGGTTCAATTTTACTTTCTCT 59.452 34.615 0.00 0.00 0.00 3.10
2534 11764 6.739112 ACTGCTGGTTCAATTTTACTTTCTC 58.261 36.000 0.00 0.00 0.00 2.87
2535 11765 6.239036 GGACTGCTGGTTCAATTTTACTTTCT 60.239 38.462 0.00 0.00 0.00 2.52
2536 11766 5.920840 GGACTGCTGGTTCAATTTTACTTTC 59.079 40.000 0.00 0.00 0.00 2.62
2537 11767 5.362430 TGGACTGCTGGTTCAATTTTACTTT 59.638 36.000 0.00 0.00 28.97 2.66
2538 11768 4.892934 TGGACTGCTGGTTCAATTTTACTT 59.107 37.500 0.00 0.00 28.97 2.24
2539 11769 4.469657 TGGACTGCTGGTTCAATTTTACT 58.530 39.130 0.00 0.00 28.97 2.24
2540 11770 4.846779 TGGACTGCTGGTTCAATTTTAC 57.153 40.909 0.00 0.00 28.97 2.01
2541 11771 5.860941 TTTGGACTGCTGGTTCAATTTTA 57.139 34.783 5.26 0.00 42.41 1.52
2542 11772 4.751767 TTTGGACTGCTGGTTCAATTTT 57.248 36.364 5.26 0.00 42.41 1.82
2543 11773 4.590222 AGATTTGGACTGCTGGTTCAATTT 59.410 37.500 5.26 0.00 42.41 1.82
2544 11774 4.154942 AGATTTGGACTGCTGGTTCAATT 58.845 39.130 5.26 2.88 42.41 2.32
2545 11775 3.771216 AGATTTGGACTGCTGGTTCAAT 58.229 40.909 5.26 0.00 42.41 2.57
2546 11776 3.228188 AGATTTGGACTGCTGGTTCAA 57.772 42.857 0.00 0.00 41.30 2.69
2547 11777 2.957402 AGATTTGGACTGCTGGTTCA 57.043 45.000 0.00 0.00 0.00 3.18
2548 11778 4.762251 AGTAAAGATTTGGACTGCTGGTTC 59.238 41.667 0.00 0.00 0.00 3.62
2549 11779 4.520492 CAGTAAAGATTTGGACTGCTGGTT 59.480 41.667 0.00 0.00 33.48 3.67
2550 11780 4.074970 CAGTAAAGATTTGGACTGCTGGT 58.925 43.478 0.00 0.00 33.48 4.00
2551 11781 4.326826 TCAGTAAAGATTTGGACTGCTGG 58.673 43.478 4.15 0.00 39.33 4.85
2552 11782 5.645067 TCATCAGTAAAGATTTGGACTGCTG 59.355 40.000 6.03 6.03 39.33 4.41
2553 11783 5.809001 TCATCAGTAAAGATTTGGACTGCT 58.191 37.500 4.15 0.00 39.33 4.24
2554 11784 6.094603 ACATCATCAGTAAAGATTTGGACTGC 59.905 38.462 4.15 0.00 39.33 4.40
2555 11785 7.551974 AGACATCATCAGTAAAGATTTGGACTG 59.448 37.037 2.99 2.99 40.56 3.51
2556 11786 7.628234 AGACATCATCAGTAAAGATTTGGACT 58.372 34.615 0.00 0.00 0.00 3.85
2557 11787 7.856145 AGACATCATCAGTAAAGATTTGGAC 57.144 36.000 0.00 0.00 0.00 4.02
2574 11804 9.244799 CGCTTGTAACACTATAAATAGACATCA 57.755 33.333 4.02 0.00 34.50 3.07
2575 11805 9.459640 TCGCTTGTAACACTATAAATAGACATC 57.540 33.333 4.02 0.00 34.50 3.06
2576 11806 9.245962 GTCGCTTGTAACACTATAAATAGACAT 57.754 33.333 4.02 0.00 34.50 3.06
2577 11807 7.430211 CGTCGCTTGTAACACTATAAATAGACA 59.570 37.037 4.02 0.00 34.50 3.41
2578 11808 7.564717 GCGTCGCTTGTAACACTATAAATAGAC 60.565 40.741 10.68 0.00 34.50 2.59
2579 11809 6.415867 GCGTCGCTTGTAACACTATAAATAGA 59.584 38.462 10.68 0.00 34.50 1.98
2580 11810 6.569821 GCGTCGCTTGTAACACTATAAATAG 58.430 40.000 10.68 0.00 36.46 1.73
2581 11811 5.171874 CGCGTCGCTTGTAACACTATAAATA 59.828 40.000 16.36 0.00 0.00 1.40
2582 11812 4.027132 CGCGTCGCTTGTAACACTATAAAT 60.027 41.667 16.36 0.00 0.00 1.40
2583 11813 3.301379 CGCGTCGCTTGTAACACTATAAA 59.699 43.478 16.36 0.00 0.00 1.40
2584 11814 2.847717 CGCGTCGCTTGTAACACTATAA 59.152 45.455 16.36 0.00 0.00 0.98
2585 11815 2.159531 ACGCGTCGCTTGTAACACTATA 60.160 45.455 16.36 0.00 0.00 1.31
2586 11816 1.265568 CGCGTCGCTTGTAACACTAT 58.734 50.000 16.36 0.00 0.00 2.12
2587 11817 0.040157 ACGCGTCGCTTGTAACACTA 60.040 50.000 16.36 0.00 0.00 2.74
2588 11818 1.299620 ACGCGTCGCTTGTAACACT 60.300 52.632 16.36 0.00 0.00 3.55
2589 11819 1.154908 CACGCGTCGCTTGTAACAC 60.155 57.895 9.86 0.00 0.00 3.32
2590 11820 2.934324 GCACGCGTCGCTTGTAACA 61.934 57.895 22.64 0.00 30.33 2.41
2591 11821 2.202008 GCACGCGTCGCTTGTAAC 60.202 61.111 22.64 5.00 30.33 2.50
2592 11822 1.763200 TTTGCACGCGTCGCTTGTAA 61.763 50.000 25.96 20.23 31.78 2.41
2593 11823 2.238437 TTTGCACGCGTCGCTTGTA 61.238 52.632 25.96 16.94 30.33 2.41
2594 11824 3.568743 TTTGCACGCGTCGCTTGT 61.569 55.556 25.96 8.65 30.33 3.16
2595 11825 3.085010 GTTTGCACGCGTCGCTTG 61.085 61.111 25.96 18.49 0.00 4.01
2596 11826 4.643385 CGTTTGCACGCGTCGCTT 62.643 61.111 25.96 2.20 40.18 4.68
2605 11835 4.696172 CCGTCGCGTCGTTTGCAC 62.696 66.667 23.01 2.60 0.00 4.57
2607 11837 3.992019 AACCGTCGCGTCGTTTGC 61.992 61.111 23.01 0.00 0.00 3.68
2608 11838 2.128274 CAACCGTCGCGTCGTTTG 60.128 61.111 23.01 21.10 0.00 2.93
2609 11839 3.992019 GCAACCGTCGCGTCGTTT 61.992 61.111 23.01 13.68 0.00 3.60
2610 11840 2.807631 ATAGCAACCGTCGCGTCGTT 62.808 55.000 23.01 14.54 0.00 3.85
2611 11841 2.807631 AATAGCAACCGTCGCGTCGT 62.808 55.000 23.01 9.60 0.00 4.34
2612 11842 0.862701 TAATAGCAACCGTCGCGTCG 60.863 55.000 18.65 18.65 0.00 5.12
2613 11843 0.844503 CTAATAGCAACCGTCGCGTC 59.155 55.000 5.77 0.00 0.00 5.19
2614 11844 1.143969 GCTAATAGCAACCGTCGCGT 61.144 55.000 5.77 0.00 41.89 6.01
2615 11845 1.558383 GCTAATAGCAACCGTCGCG 59.442 57.895 7.49 0.00 41.89 5.87
2636 11866 9.388346 CGGCAATCGCAACTTATAATAAATAAA 57.612 29.630 0.00 0.00 41.24 1.40
2637 11867 8.561212 ACGGCAATCGCAACTTATAATAAATAA 58.439 29.630 0.00 0.00 43.89 1.40
2638 11868 8.090250 ACGGCAATCGCAACTTATAATAAATA 57.910 30.769 0.00 0.00 43.89 1.40
2639 11869 6.966021 ACGGCAATCGCAACTTATAATAAAT 58.034 32.000 0.00 0.00 43.89 1.40
2640 11870 6.366315 ACGGCAATCGCAACTTATAATAAA 57.634 33.333 0.00 0.00 43.89 1.40
2641 11871 5.994887 ACGGCAATCGCAACTTATAATAA 57.005 34.783 0.00 0.00 43.89 1.40
2642 11872 5.994887 AACGGCAATCGCAACTTATAATA 57.005 34.783 0.00 0.00 43.89 0.98
2643 11873 4.893424 AACGGCAATCGCAACTTATAAT 57.107 36.364 0.00 0.00 43.89 1.28
2644 11874 4.688511 AAACGGCAATCGCAACTTATAA 57.311 36.364 0.00 0.00 43.89 0.98
2645 11875 5.798015 TTAAACGGCAATCGCAACTTATA 57.202 34.783 0.00 0.00 43.89 0.98
2646 11876 4.688511 TTAAACGGCAATCGCAACTTAT 57.311 36.364 0.00 0.00 43.89 1.73
2647 11877 4.083217 ACATTAAACGGCAATCGCAACTTA 60.083 37.500 0.00 0.00 43.89 2.24
2648 11878 3.241701 CATTAAACGGCAATCGCAACTT 58.758 40.909 0.00 0.00 43.89 2.66
2649 11879 2.227865 ACATTAAACGGCAATCGCAACT 59.772 40.909 0.00 0.00 43.89 3.16
2650 11880 2.591133 ACATTAAACGGCAATCGCAAC 58.409 42.857 0.00 0.00 43.89 4.17
2651 11881 2.726373 CGACATTAAACGGCAATCGCAA 60.726 45.455 0.00 0.00 43.89 4.85
2652 11882 1.201976 CGACATTAAACGGCAATCGCA 60.202 47.619 0.00 0.00 43.89 5.10
2653 11883 1.452717 CGACATTAAACGGCAATCGC 58.547 50.000 0.00 0.00 43.89 4.58
2654 11884 1.062002 AGCGACATTAAACGGCAATCG 59.938 47.619 0.00 0.00 45.88 3.34
2655 11885 2.538939 GGAGCGACATTAAACGGCAATC 60.539 50.000 0.00 0.00 0.00 2.67
2656 11886 1.400494 GGAGCGACATTAAACGGCAAT 59.600 47.619 0.00 0.00 0.00 3.56
2657 11887 0.800012 GGAGCGACATTAAACGGCAA 59.200 50.000 0.00 0.00 0.00 4.52
2658 11888 1.355796 CGGAGCGACATTAAACGGCA 61.356 55.000 0.00 0.00 0.00 5.69
2659 11889 1.347221 CGGAGCGACATTAAACGGC 59.653 57.895 0.00 0.00 0.00 5.68
2660 11890 0.458889 TCCGGAGCGACATTAAACGG 60.459 55.000 0.00 0.00 41.06 4.44
2661 11891 1.352114 TTCCGGAGCGACATTAAACG 58.648 50.000 3.34 0.00 0.00 3.60
2662 11892 2.997986 TCTTTCCGGAGCGACATTAAAC 59.002 45.455 3.34 0.00 0.00 2.01
2663 11893 3.056393 TCTCTTTCCGGAGCGACATTAAA 60.056 43.478 3.34 0.00 33.70 1.52
2664 11894 2.494471 TCTCTTTCCGGAGCGACATTAA 59.506 45.455 3.34 0.00 33.70 1.40
2665 11895 2.097036 TCTCTTTCCGGAGCGACATTA 58.903 47.619 3.34 0.00 33.70 1.90
2666 11896 0.895530 TCTCTTTCCGGAGCGACATT 59.104 50.000 3.34 0.00 33.70 2.71
2667 11897 0.895530 TTCTCTTTCCGGAGCGACAT 59.104 50.000 3.34 0.00 33.70 3.06
2668 11898 0.895530 ATTCTCTTTCCGGAGCGACA 59.104 50.000 3.34 0.00 33.70 4.35
2669 11899 2.011540 AATTCTCTTTCCGGAGCGAC 57.988 50.000 3.34 0.00 33.70 5.19
2670 11900 3.880047 TTAATTCTCTTTCCGGAGCGA 57.120 42.857 3.34 4.30 33.70 4.93
2671 11901 3.309954 CCTTTAATTCTCTTTCCGGAGCG 59.690 47.826 3.34 0.00 33.70 5.03
2672 11902 4.333095 GTCCTTTAATTCTCTTTCCGGAGC 59.667 45.833 3.34 0.00 33.70 4.70
2673 11903 4.567159 CGTCCTTTAATTCTCTTTCCGGAG 59.433 45.833 3.34 0.00 34.88 4.63
2674 11904 4.020839 ACGTCCTTTAATTCTCTTTCCGGA 60.021 41.667 0.00 0.00 0.00 5.14
2675 11905 4.092968 CACGTCCTTTAATTCTCTTTCCGG 59.907 45.833 0.00 0.00 0.00 5.14
2676 11906 4.092968 CCACGTCCTTTAATTCTCTTTCCG 59.907 45.833 0.00 0.00 0.00 4.30
2677 11907 5.001874 ACCACGTCCTTTAATTCTCTTTCC 58.998 41.667 0.00 0.00 0.00 3.13
2678 11908 6.555812 AACCACGTCCTTTAATTCTCTTTC 57.444 37.500 0.00 0.00 0.00 2.62
2679 11909 5.178809 CGAACCACGTCCTTTAATTCTCTTT 59.821 40.000 0.00 0.00 37.22 2.52
2680 11910 4.689345 CGAACCACGTCCTTTAATTCTCTT 59.311 41.667 0.00 0.00 37.22 2.85
2681 11911 4.243270 CGAACCACGTCCTTTAATTCTCT 58.757 43.478 0.00 0.00 37.22 3.10
2682 11912 3.370061 CCGAACCACGTCCTTTAATTCTC 59.630 47.826 0.00 0.00 40.78 2.87
2683 11913 3.332034 CCGAACCACGTCCTTTAATTCT 58.668 45.455 0.00 0.00 40.78 2.40
2684 11914 2.417586 CCCGAACCACGTCCTTTAATTC 59.582 50.000 0.00 0.00 40.78 2.17
2685 11915 2.224597 ACCCGAACCACGTCCTTTAATT 60.225 45.455 0.00 0.00 40.78 1.40
2686 11916 1.348696 ACCCGAACCACGTCCTTTAAT 59.651 47.619 0.00 0.00 40.78 1.40
2687 11917 0.758123 ACCCGAACCACGTCCTTTAA 59.242 50.000 0.00 0.00 40.78 1.52
2688 11918 0.318120 GACCCGAACCACGTCCTTTA 59.682 55.000 0.00 0.00 40.78 1.85
2689 11919 1.070275 GACCCGAACCACGTCCTTT 59.930 57.895 0.00 0.00 40.78 3.11
2690 11920 2.739132 GACCCGAACCACGTCCTT 59.261 61.111 0.00 0.00 40.78 3.36
2691 11921 3.308705 GGACCCGAACCACGTCCT 61.309 66.667 0.00 0.00 40.78 3.85
2692 11922 1.606885 TATGGACCCGAACCACGTCC 61.607 60.000 0.00 0.00 40.36 4.79
2693 11923 0.459063 GTATGGACCCGAACCACGTC 60.459 60.000 0.00 0.00 40.36 4.34
2694 11924 1.593265 GTATGGACCCGAACCACGT 59.407 57.895 0.00 0.00 40.36 4.49
2695 11925 1.517694 CGTATGGACCCGAACCACG 60.518 63.158 0.00 0.00 40.36 4.94
2696 11926 0.247185 TTCGTATGGACCCGAACCAC 59.753 55.000 0.53 0.00 40.36 4.16
2697 11927 0.975135 TTTCGTATGGACCCGAACCA 59.025 50.000 3.86 0.00 42.21 3.67
2698 11928 1.362768 GTTTCGTATGGACCCGAACC 58.637 55.000 3.86 0.00 42.21 3.62
2699 11929 0.994263 CGTTTCGTATGGACCCGAAC 59.006 55.000 3.86 0.69 42.21 3.95
2700 11930 0.887247 TCGTTTCGTATGGACCCGAA 59.113 50.000 0.53 0.53 40.94 4.30
2701 11931 0.452987 CTCGTTTCGTATGGACCCGA 59.547 55.000 0.00 0.00 0.00 5.14
2702 11932 1.143969 GCTCGTTTCGTATGGACCCG 61.144 60.000 0.00 0.00 0.00 5.28
2703 11933 0.175073 AGCTCGTTTCGTATGGACCC 59.825 55.000 0.00 0.00 0.00 4.46
2704 11934 1.278238 CAGCTCGTTTCGTATGGACC 58.722 55.000 0.00 0.00 0.00 4.46
2705 11935 1.992170 ACAGCTCGTTTCGTATGGAC 58.008 50.000 0.00 0.00 0.00 4.02
2706 11936 2.736144 AACAGCTCGTTTCGTATGGA 57.264 45.000 0.00 0.00 32.35 3.41
2707 11937 4.171005 TCTAAACAGCTCGTTTCGTATGG 58.829 43.478 14.76 0.00 44.78 2.74
2708 11938 5.571741 TCTTCTAAACAGCTCGTTTCGTATG 59.428 40.000 14.76 7.17 44.78 2.39
2709 11939 5.706916 TCTTCTAAACAGCTCGTTTCGTAT 58.293 37.500 14.76 0.00 44.78 3.06
2710 11940 5.112220 TCTTCTAAACAGCTCGTTTCGTA 57.888 39.130 14.76 5.49 44.78 3.43
2711 11941 3.973657 TCTTCTAAACAGCTCGTTTCGT 58.026 40.909 14.76 0.00 44.78 3.85
2712 11942 4.966850 TTCTTCTAAACAGCTCGTTTCG 57.033 40.909 14.76 10.58 44.78 3.46
2713 11943 6.010074 CGATTTCTTCTAAACAGCTCGTTTC 58.990 40.000 14.76 1.55 44.78 2.78
2715 11945 5.227908 TCGATTTCTTCTAAACAGCTCGTT 58.772 37.500 0.00 0.00 40.50 3.85
2716 11946 4.806330 TCGATTTCTTCTAAACAGCTCGT 58.194 39.130 0.00 0.00 0.00 4.18
2717 11947 5.096169 TCTCGATTTCTTCTAAACAGCTCG 58.904 41.667 0.00 0.00 0.00 5.03
2718 11948 6.326375 TCTCTCGATTTCTTCTAAACAGCTC 58.674 40.000 0.00 0.00 0.00 4.09
2719 11949 6.274157 TCTCTCGATTTCTTCTAAACAGCT 57.726 37.500 0.00 0.00 0.00 4.24
2720 11950 5.518487 CCTCTCTCGATTTCTTCTAAACAGC 59.482 44.000 0.00 0.00 0.00 4.40
2721 11951 6.857956 TCCTCTCTCGATTTCTTCTAAACAG 58.142 40.000 0.00 0.00 0.00 3.16
2722 11952 6.835819 TCCTCTCTCGATTTCTTCTAAACA 57.164 37.500 0.00 0.00 0.00 2.83
2723 11953 7.484975 TGATCCTCTCTCGATTTCTTCTAAAC 58.515 38.462 0.00 0.00 0.00 2.01
2724 11954 7.646548 TGATCCTCTCTCGATTTCTTCTAAA 57.353 36.000 0.00 0.00 0.00 1.85
2725 11955 7.558081 TCTTGATCCTCTCTCGATTTCTTCTAA 59.442 37.037 0.00 0.00 0.00 2.10
2726 11956 7.057264 TCTTGATCCTCTCTCGATTTCTTCTA 58.943 38.462 0.00 0.00 0.00 2.10
2727 11957 5.890985 TCTTGATCCTCTCTCGATTTCTTCT 59.109 40.000 0.00 0.00 0.00 2.85
2728 11958 6.039270 TCTCTTGATCCTCTCTCGATTTCTTC 59.961 42.308 0.00 0.00 0.00 2.87
2729 11959 5.890985 TCTCTTGATCCTCTCTCGATTTCTT 59.109 40.000 0.00 0.00 0.00 2.52
2730 11960 5.445069 TCTCTTGATCCTCTCTCGATTTCT 58.555 41.667 0.00 0.00 0.00 2.52
2731 11961 5.766150 TCTCTTGATCCTCTCTCGATTTC 57.234 43.478 0.00 0.00 0.00 2.17
2732 11962 6.154363 ACTTTCTCTTGATCCTCTCTCGATTT 59.846 38.462 0.00 0.00 0.00 2.17
2733 11963 5.656416 ACTTTCTCTTGATCCTCTCTCGATT 59.344 40.000 0.00 0.00 0.00 3.34
2734 11964 5.200483 ACTTTCTCTTGATCCTCTCTCGAT 58.800 41.667 0.00 0.00 0.00 3.59
2735 11965 4.594970 ACTTTCTCTTGATCCTCTCTCGA 58.405 43.478 0.00 0.00 0.00 4.04
2736 11966 4.981806 ACTTTCTCTTGATCCTCTCTCG 57.018 45.455 0.00 0.00 0.00 4.04
2737 11967 9.665719 ATTTTTACTTTCTCTTGATCCTCTCTC 57.334 33.333 0.00 0.00 0.00 3.20
2738 11968 9.447157 CATTTTTACTTTCTCTTGATCCTCTCT 57.553 33.333 0.00 0.00 0.00 3.10
2739 11969 9.442047 TCATTTTTACTTTCTCTTGATCCTCTC 57.558 33.333 0.00 0.00 0.00 3.20
2740 11970 9.799106 TTCATTTTTACTTTCTCTTGATCCTCT 57.201 29.630 0.00 0.00 0.00 3.69
2741 11971 9.833182 GTTCATTTTTACTTTCTCTTGATCCTC 57.167 33.333 0.00 0.00 0.00 3.71
2742 11972 8.797438 GGTTCATTTTTACTTTCTCTTGATCCT 58.203 33.333 0.00 0.00 0.00 3.24
2743 11973 8.576442 TGGTTCATTTTTACTTTCTCTTGATCC 58.424 33.333 0.00 0.00 0.00 3.36
2744 11974 9.617975 CTGGTTCATTTTTACTTTCTCTTGATC 57.382 33.333 0.00 0.00 0.00 2.92
2745 11975 8.084684 GCTGGTTCATTTTTACTTTCTCTTGAT 58.915 33.333 0.00 0.00 0.00 2.57
2746 11976 7.068103 TGCTGGTTCATTTTTACTTTCTCTTGA 59.932 33.333 0.00 0.00 0.00 3.02
2747 11977 7.202526 TGCTGGTTCATTTTTACTTTCTCTTG 58.797 34.615 0.00 0.00 0.00 3.02
2748 11978 7.068716 ACTGCTGGTTCATTTTTACTTTCTCTT 59.931 33.333 0.00 0.00 0.00 2.85
2749 11979 6.547510 ACTGCTGGTTCATTTTTACTTTCTCT 59.452 34.615 0.00 0.00 0.00 3.10
2750 11980 6.739112 ACTGCTGGTTCATTTTTACTTTCTC 58.261 36.000 0.00 0.00 0.00 2.87
2751 11981 6.239036 GGACTGCTGGTTCATTTTTACTTTCT 60.239 38.462 0.00 0.00 0.00 2.52
2752 11982 5.920840 GGACTGCTGGTTCATTTTTACTTTC 59.079 40.000 0.00 0.00 0.00 2.62
2753 11983 5.362430 TGGACTGCTGGTTCATTTTTACTTT 59.638 36.000 0.00 0.00 0.00 2.66
2754 11984 4.892934 TGGACTGCTGGTTCATTTTTACTT 59.107 37.500 0.00 0.00 0.00 2.24
2755 11985 4.469657 TGGACTGCTGGTTCATTTTTACT 58.530 39.130 0.00 0.00 0.00 2.24
2756 11986 4.846779 TGGACTGCTGGTTCATTTTTAC 57.153 40.909 0.00 0.00 0.00 2.01
2757 11987 5.860941 TTTGGACTGCTGGTTCATTTTTA 57.139 34.783 0.00 0.00 32.76 1.52
2758 11988 4.751767 TTTGGACTGCTGGTTCATTTTT 57.248 36.364 0.00 0.00 32.76 1.94
2759 11989 4.590222 AGATTTGGACTGCTGGTTCATTTT 59.410 37.500 0.00 0.00 32.76 1.82
2760 11990 4.154942 AGATTTGGACTGCTGGTTCATTT 58.845 39.130 0.00 0.00 32.76 2.32
2761 11991 3.771216 AGATTTGGACTGCTGGTTCATT 58.229 40.909 0.00 0.00 32.76 2.57
2762 11992 3.446442 AGATTTGGACTGCTGGTTCAT 57.554 42.857 0.00 0.00 32.76 2.57
2763 11993 2.957402 AGATTTGGACTGCTGGTTCA 57.043 45.000 0.00 0.00 0.00 3.18
2764 11994 5.904362 ATAAAGATTTGGACTGCTGGTTC 57.096 39.130 0.00 0.00 0.00 3.62
2765 11995 5.047092 CCAATAAAGATTTGGACTGCTGGTT 60.047 40.000 0.00 0.00 45.35 3.67
2766 11996 4.463891 CCAATAAAGATTTGGACTGCTGGT 59.536 41.667 0.00 0.00 45.35 4.00
2767 11997 4.463891 ACCAATAAAGATTTGGACTGCTGG 59.536 41.667 9.31 0.00 45.35 4.85
2768 11998 5.183713 TCACCAATAAAGATTTGGACTGCTG 59.816 40.000 9.31 0.00 45.35 4.41
2769 11999 5.324409 TCACCAATAAAGATTTGGACTGCT 58.676 37.500 9.31 0.00 45.35 4.24
2770 12000 5.643379 TCACCAATAAAGATTTGGACTGC 57.357 39.130 9.31 0.00 45.35 4.40
2771 12001 7.121759 AGACATCACCAATAAAGATTTGGACTG 59.878 37.037 9.31 5.98 45.35 3.51
2772 12002 7.177878 AGACATCACCAATAAAGATTTGGACT 58.822 34.615 9.31 0.00 45.35 3.85
2773 12003 7.396540 AGACATCACCAATAAAGATTTGGAC 57.603 36.000 9.31 0.00 45.35 4.02
2774 12004 9.699410 AATAGACATCACCAATAAAGATTTGGA 57.301 29.630 9.31 0.00 45.35 3.53
2793 12023 8.748582 CGTCGCTTGTAACAATATAAATAGACA 58.251 33.333 0.00 0.00 0.00 3.41
2794 12024 7.734726 GCGTCGCTTGTAACAATATAAATAGAC 59.265 37.037 10.68 0.00 0.00 2.59
2795 12025 7.357777 CGCGTCGCTTGTAACAATATAAATAGA 60.358 37.037 16.36 0.00 0.00 1.98
2796 12026 6.726218 CGCGTCGCTTGTAACAATATAAATAG 59.274 38.462 16.36 0.00 0.00 1.73
2797 12027 6.198778 ACGCGTCGCTTGTAACAATATAAATA 59.801 34.615 16.36 0.00 0.00 1.40
2798 12028 5.005971 ACGCGTCGCTTGTAACAATATAAAT 59.994 36.000 16.36 0.00 0.00 1.40
2799 12029 4.326817 ACGCGTCGCTTGTAACAATATAAA 59.673 37.500 16.36 0.00 0.00 1.40
2800 12030 3.858812 ACGCGTCGCTTGTAACAATATAA 59.141 39.130 16.36 0.00 0.00 0.98
2801 12031 3.241091 CACGCGTCGCTTGTAACAATATA 59.759 43.478 9.86 0.00 0.00 0.86
2802 12032 2.028763 CACGCGTCGCTTGTAACAATAT 59.971 45.455 9.86 0.00 0.00 1.28
2803 12033 1.387420 CACGCGTCGCTTGTAACAATA 59.613 47.619 9.86 0.00 0.00 1.90
2804 12034 0.162933 CACGCGTCGCTTGTAACAAT 59.837 50.000 9.86 0.00 0.00 2.71
2805 12035 1.560770 CACGCGTCGCTTGTAACAA 59.439 52.632 9.86 0.00 0.00 2.83
2806 12036 2.934324 GCACGCGTCGCTTGTAACA 61.934 57.895 22.64 0.00 30.33 2.41
2807 12037 2.202008 GCACGCGTCGCTTGTAAC 60.202 61.111 22.64 5.00 30.33 2.50
2808 12038 1.763200 TTTGCACGCGTCGCTTGTAA 61.763 50.000 25.96 20.23 31.78 2.41
2809 12039 2.238437 TTTGCACGCGTCGCTTGTA 61.238 52.632 25.96 16.94 30.33 2.41
2810 12040 3.568743 TTTGCACGCGTCGCTTGT 61.569 55.556 25.96 8.65 30.33 3.16
2811 12041 3.085010 GTTTGCACGCGTCGCTTG 61.085 61.111 25.96 18.49 0.00 4.01
2812 12042 4.643385 CGTTTGCACGCGTCGCTT 62.643 61.111 25.96 2.20 40.18 4.68
2815 12045 3.479800 TTGTCGTTTGCACGCGTCG 62.480 57.895 9.86 10.33 46.70 5.12
2816 12046 1.717728 CTTGTCGTTTGCACGCGTC 60.718 57.895 9.86 5.12 46.70 5.19
2817 12047 2.168503 TCTTGTCGTTTGCACGCGT 61.169 52.632 5.58 5.58 46.70 6.01
2818 12048 1.717728 GTCTTGTCGTTTGCACGCG 60.718 57.895 3.53 3.53 46.70 6.01
2819 12049 1.717728 CGTCTTGTCGTTTGCACGC 60.718 57.895 0.00 0.00 46.70 5.34
2821 12051 0.375803 AACCGTCTTGTCGTTTGCAC 59.624 50.000 0.00 0.00 0.00 4.57
2822 12052 0.375454 CAACCGTCTTGTCGTTTGCA 59.625 50.000 0.00 0.00 0.00 4.08
2823 12053 3.142796 CAACCGTCTTGTCGTTTGC 57.857 52.632 0.00 0.00 0.00 3.68
2824 12054 0.655733 AGCAACCGTCTTGTCGTTTG 59.344 50.000 0.00 0.00 36.56 2.93
2825 12055 2.228138 TAGCAACCGTCTTGTCGTTT 57.772 45.000 0.00 0.00 0.00 3.60
2826 12056 2.450609 ATAGCAACCGTCTTGTCGTT 57.549 45.000 0.00 0.00 0.00 3.85
2827 12057 2.450609 AATAGCAACCGTCTTGTCGT 57.549 45.000 0.00 0.00 0.00 4.34
2828 12058 2.281762 GCTAATAGCAACCGTCTTGTCG 59.718 50.000 7.49 0.00 41.89 4.35
2829 12059 3.927552 GCTAATAGCAACCGTCTTGTC 57.072 47.619 7.49 0.00 41.89 3.18
2846 12076 9.727859 TCACAACCTGTAATAAATAAACTGCTA 57.272 29.630 0.00 0.00 0.00 3.49
2847 12077 8.630054 TCACAACCTGTAATAAATAAACTGCT 57.370 30.769 0.00 0.00 0.00 4.24
2848 12078 9.855021 AATCACAACCTGTAATAAATAAACTGC 57.145 29.630 0.00 0.00 0.00 4.40
2850 12080 9.855021 GCAATCACAACCTGTAATAAATAAACT 57.145 29.630 0.00 0.00 0.00 2.66
2851 12081 9.083080 GGCAATCACAACCTGTAATAAATAAAC 57.917 33.333 0.00 0.00 0.00 2.01
2852 12082 7.971168 CGGCAATCACAACCTGTAATAAATAAA 59.029 33.333 0.00 0.00 0.00 1.40
2853 12083 7.121463 ACGGCAATCACAACCTGTAATAAATAA 59.879 33.333 0.00 0.00 0.00 1.40
2854 12084 6.600032 ACGGCAATCACAACCTGTAATAAATA 59.400 34.615 0.00 0.00 0.00 1.40
2855 12085 5.417580 ACGGCAATCACAACCTGTAATAAAT 59.582 36.000 0.00 0.00 0.00 1.40
2856 12086 4.762765 ACGGCAATCACAACCTGTAATAAA 59.237 37.500 0.00 0.00 0.00 1.40
2857 12087 4.328536 ACGGCAATCACAACCTGTAATAA 58.671 39.130 0.00 0.00 0.00 1.40
2858 12088 3.945346 ACGGCAATCACAACCTGTAATA 58.055 40.909 0.00 0.00 0.00 0.98
2859 12089 2.790433 ACGGCAATCACAACCTGTAAT 58.210 42.857 0.00 0.00 0.00 1.89
2860 12090 2.264005 ACGGCAATCACAACCTGTAA 57.736 45.000 0.00 0.00 0.00 2.41
2861 12091 2.264005 AACGGCAATCACAACCTGTA 57.736 45.000 0.00 0.00 0.00 2.74
2862 12092 1.398692 AAACGGCAATCACAACCTGT 58.601 45.000 0.00 0.00 0.00 4.00
2863 12093 3.634568 TTAAACGGCAATCACAACCTG 57.365 42.857 0.00 0.00 0.00 4.00
2864 12094 4.864704 AATTAAACGGCAATCACAACCT 57.135 36.364 0.00 0.00 0.00 3.50
2865 12095 4.387559 GGAAATTAAACGGCAATCACAACC 59.612 41.667 0.00 0.00 0.00 3.77
2866 12096 4.387559 GGGAAATTAAACGGCAATCACAAC 59.612 41.667 0.00 0.00 0.00 3.32
2867 12097 4.282195 AGGGAAATTAAACGGCAATCACAA 59.718 37.500 0.00 0.00 0.00 3.33
2868 12098 3.829601 AGGGAAATTAAACGGCAATCACA 59.170 39.130 0.00 0.00 0.00 3.58
2869 12099 4.421058 GAGGGAAATTAAACGGCAATCAC 58.579 43.478 0.00 0.00 0.00 3.06
2870 12100 3.445805 GGAGGGAAATTAAACGGCAATCA 59.554 43.478 0.00 0.00 0.00 2.57
2871 12101 3.445805 TGGAGGGAAATTAAACGGCAATC 59.554 43.478 0.00 0.00 0.00 2.67
2872 12102 3.436243 TGGAGGGAAATTAAACGGCAAT 58.564 40.909 0.00 0.00 0.00 3.56
2873 12103 2.823154 CTGGAGGGAAATTAAACGGCAA 59.177 45.455 0.00 0.00 0.00 4.52
2874 12104 2.040545 TCTGGAGGGAAATTAAACGGCA 59.959 45.455 0.00 0.00 0.00 5.69
2875 12105 2.718563 TCTGGAGGGAAATTAAACGGC 58.281 47.619 0.00 0.00 0.00 5.68
2876 12106 5.007682 TCTTTCTGGAGGGAAATTAAACGG 58.992 41.667 0.00 0.00 35.12 4.44
2877 12107 5.938125 TCTCTTTCTGGAGGGAAATTAAACG 59.062 40.000 0.00 0.00 35.12 3.60
2878 12108 7.761038 TTCTCTTTCTGGAGGGAAATTAAAC 57.239 36.000 0.00 0.00 33.32 2.01
2884 12114 6.274672 TCCTTATTTCTCTTTCTGGAGGGAAA 59.725 38.462 2.74 2.74 46.84 3.13
2885 12115 5.790618 TCCTTATTTCTCTTTCTGGAGGGAA 59.209 40.000 0.00 0.00 34.40 3.97
2886 12116 5.189934 GTCCTTATTTCTCTTTCTGGAGGGA 59.810 44.000 0.00 0.00 34.39 4.20
2887 12117 5.432645 GTCCTTATTTCTCTTTCTGGAGGG 58.567 45.833 0.00 0.00 34.39 4.30
2888 12118 5.112686 CGTCCTTATTTCTCTTTCTGGAGG 58.887 45.833 0.00 0.00 34.39 4.30
2889 12119 5.578727 CACGTCCTTATTTCTCTTTCTGGAG 59.421 44.000 0.00 0.00 34.88 3.86
2890 12120 5.011738 ACACGTCCTTATTTCTCTTTCTGGA 59.988 40.000 0.00 0.00 0.00 3.86
2891 12121 5.238583 ACACGTCCTTATTTCTCTTTCTGG 58.761 41.667 0.00 0.00 0.00 3.86
2892 12122 6.787085 AACACGTCCTTATTTCTCTTTCTG 57.213 37.500 0.00 0.00 0.00 3.02
2893 12123 6.145696 CGAAACACGTCCTTATTTCTCTTTCT 59.854 38.462 0.00 0.00 37.22 2.52
2894 12124 6.297353 CGAAACACGTCCTTATTTCTCTTTC 58.703 40.000 0.00 0.00 37.22 2.62
2895 12125 5.178809 CCGAAACACGTCCTTATTTCTCTTT 59.821 40.000 0.00 0.00 40.78 2.52
2896 12126 4.689345 CCGAAACACGTCCTTATTTCTCTT 59.311 41.667 0.00 0.00 40.78 2.85
2897 12127 4.243270 CCGAAACACGTCCTTATTTCTCT 58.757 43.478 0.00 0.00 40.78 3.10
2898 12128 3.370061 CCCGAAACACGTCCTTATTTCTC 59.630 47.826 0.00 0.00 40.78 2.87
2899 12129 3.244318 ACCCGAAACACGTCCTTATTTCT 60.244 43.478 0.00 0.00 40.78 2.52
2900 12130 3.069289 ACCCGAAACACGTCCTTATTTC 58.931 45.455 0.00 0.00 40.78 2.17
2901 12131 3.069289 GACCCGAAACACGTCCTTATTT 58.931 45.455 0.00 0.00 40.78 1.40
2902 12132 2.613725 GGACCCGAAACACGTCCTTATT 60.614 50.000 0.00 0.00 40.78 1.40
2903 12133 1.066645 GGACCCGAAACACGTCCTTAT 60.067 52.381 0.00 0.00 40.78 1.73
2904 12134 0.318120 GGACCCGAAACACGTCCTTA 59.682 55.000 0.00 0.00 40.78 2.69
2905 12135 1.070275 GGACCCGAAACACGTCCTT 59.930 57.895 0.00 0.00 40.78 3.36
2906 12136 1.477685 ATGGACCCGAAACACGTCCT 61.478 55.000 6.98 0.00 37.81 3.85
2907 12137 0.247185 TATGGACCCGAAACACGTCC 59.753 55.000 0.00 0.00 40.78 4.79
2908 12138 1.067354 AGTATGGACCCGAAACACGTC 60.067 52.381 0.00 0.00 40.78 4.34
2909 12139 0.971386 AGTATGGACCCGAAACACGT 59.029 50.000 0.00 0.00 40.78 4.49
2910 12140 1.067425 TCAGTATGGACCCGAAACACG 60.067 52.381 0.00 0.00 38.15 4.49
2911 12141 2.344025 GTCAGTATGGACCCGAAACAC 58.656 52.381 0.00 0.00 36.16 3.32
2912 12142 1.067425 CGTCAGTATGGACCCGAAACA 60.067 52.381 0.00 0.00 36.16 2.83
2913 12143 1.203052 TCGTCAGTATGGACCCGAAAC 59.797 52.381 0.00 0.00 36.16 2.78
2914 12144 1.548081 TCGTCAGTATGGACCCGAAA 58.452 50.000 0.00 0.00 36.16 3.46
2915 12145 1.548081 TTCGTCAGTATGGACCCGAA 58.452 50.000 0.00 0.00 36.16 4.30
2916 12146 1.771565 ATTCGTCAGTATGGACCCGA 58.228 50.000 0.00 0.00 36.16 5.14
2917 12147 2.621998 ACTATTCGTCAGTATGGACCCG 59.378 50.000 0.00 0.00 36.16 5.28
2918 12148 4.667519 AACTATTCGTCAGTATGGACCC 57.332 45.455 0.00 0.00 36.16 4.46
2942 12172 4.513692 TCTCGATCCTCTCTCGATTTCTTC 59.486 45.833 0.00 0.00 43.53 2.87
2943 12173 4.456535 TCTCGATCCTCTCTCGATTTCTT 58.543 43.478 0.00 0.00 43.53 2.52
2944 12174 4.065088 CTCTCGATCCTCTCTCGATTTCT 58.935 47.826 0.00 0.00 43.53 2.52
2945 12175 4.062293 TCTCTCGATCCTCTCTCGATTTC 58.938 47.826 0.00 0.00 43.53 2.17
2946 12176 4.079980 TCTCTCGATCCTCTCTCGATTT 57.920 45.455 0.00 0.00 43.53 2.17
2947 12177 3.762407 TCTCTCGATCCTCTCTCGATT 57.238 47.619 0.00 0.00 43.53 3.34
2948 12178 3.762407 TTCTCTCGATCCTCTCTCGAT 57.238 47.619 0.00 0.00 43.53 3.59
2949 12179 3.118555 ACTTTCTCTCGATCCTCTCTCGA 60.119 47.826 0.00 0.00 42.44 4.04
2950 12180 3.202906 ACTTTCTCTCGATCCTCTCTCG 58.797 50.000 0.00 0.00 37.47 4.04
2951 12181 6.687081 TTTACTTTCTCTCGATCCTCTCTC 57.313 41.667 0.00 0.00 0.00 3.20
2952 12182 7.039644 TGTTTTTACTTTCTCTCGATCCTCTCT 60.040 37.037 0.00 0.00 0.00 3.10
2953 12183 7.062488 GTGTTTTTACTTTCTCTCGATCCTCTC 59.938 40.741 0.00 0.00 0.00 3.20
2954 12184 6.869388 GTGTTTTTACTTTCTCTCGATCCTCT 59.131 38.462 0.00 0.00 0.00 3.69
2955 12185 6.869388 AGTGTTTTTACTTTCTCTCGATCCTC 59.131 38.462 0.00 0.00 0.00 3.71
2956 12186 6.760291 AGTGTTTTTACTTTCTCTCGATCCT 58.240 36.000 0.00 0.00 0.00 3.24
2957 12187 7.813627 ACTAGTGTTTTTACTTTCTCTCGATCC 59.186 37.037 0.00 0.00 32.19 3.36
2958 12188 8.745464 ACTAGTGTTTTTACTTTCTCTCGATC 57.255 34.615 0.00 0.00 32.19 3.69
2959 12189 9.843334 CTACTAGTGTTTTTACTTTCTCTCGAT 57.157 33.333 5.39 0.00 32.19 3.59
2960 12190 9.060347 TCTACTAGTGTTTTTACTTTCTCTCGA 57.940 33.333 5.39 0.00 32.19 4.04
2961 12191 9.674824 TTCTACTAGTGTTTTTACTTTCTCTCG 57.325 33.333 5.39 0.00 32.19 4.04
2969 12199 8.565416 GCCATGTTTTCTACTAGTGTTTTTACT 58.435 33.333 5.39 0.00 34.71 2.24
2970 12200 8.565416 AGCCATGTTTTCTACTAGTGTTTTTAC 58.435 33.333 5.39 0.00 0.00 2.01
2971 12201 8.685838 AGCCATGTTTTCTACTAGTGTTTTTA 57.314 30.769 5.39 0.00 0.00 1.52
2972 12202 7.582667 AGCCATGTTTTCTACTAGTGTTTTT 57.417 32.000 5.39 0.00 0.00 1.94
2973 12203 7.582667 AAGCCATGTTTTCTACTAGTGTTTT 57.417 32.000 5.39 0.00 0.00 2.43
2974 12204 7.425606 CAAAGCCATGTTTTCTACTAGTGTTT 58.574 34.615 5.39 0.00 0.00 2.83
3009 12239 1.423921 CCGGGATTAATGGGCTTACCT 59.576 52.381 0.00 0.00 41.11 3.08
3068 12300 2.036256 CCCCCTGGCCTCACAAAG 59.964 66.667 3.32 0.00 0.00 2.77
3103 12337 0.768622 AGACAAACCGGGACCAATGA 59.231 50.000 6.32 0.00 0.00 2.57
3183 12417 3.332187 TCACCAACTGGGATCAATGGTTA 59.668 43.478 0.00 0.00 39.62 2.85
3205 12439 1.633432 TCATTTGGTCCCGATTCCAGT 59.367 47.619 0.00 0.00 35.05 4.00
3225 12459 3.277416 AGAACCAGGACTAAAGGACCT 57.723 47.619 0.00 0.00 34.02 3.85
3368 12606 9.900090 CATGCATTTCATCGAACACCTCATGTT 62.900 40.741 0.00 0.00 43.35 2.71
3392 12630 4.006319 GAGAAAGCTTAAGTGTGGCTCAT 58.994 43.478 0.00 0.00 35.06 2.90
3393 12631 3.403038 GAGAAAGCTTAAGTGTGGCTCA 58.597 45.455 0.00 0.00 35.06 4.26
3463 12701 1.271163 GGACAGGACGGATCACCAAAA 60.271 52.381 0.00 0.00 35.59 2.44
3471 12709 2.758737 GGACGGGACAGGACGGAT 60.759 66.667 0.00 0.00 0.00 4.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.