Multiple sequence alignment - TraesCS4B01G058500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G058500 chr4B 100.000 5721 0 0 1 5721 49735145 49740865 0.000000e+00 10565.0
1 TraesCS4B01G058500 chr4B 87.273 165 15 3 5129 5293 483582139 483581981 3.520000e-42 183.0
2 TraesCS4B01G058500 chr4A 93.035 2283 109 23 309 2557 567692364 567690098 0.000000e+00 3290.0
3 TraesCS4B01G058500 chr4A 93.696 698 30 5 3325 4010 567688557 567687862 0.000000e+00 1033.0
4 TraesCS4B01G058500 chr4A 94.788 614 25 3 2557 3169 567690068 567689461 0.000000e+00 950.0
5 TraesCS4B01G058500 chr4A 94.523 493 19 5 4628 5119 567687011 567686526 0.000000e+00 754.0
6 TraesCS4B01G058500 chr4A 91.286 482 24 7 4152 4630 567687613 567687147 4.830000e-180 641.0
7 TraesCS4B01G058500 chr4A 85.115 477 18 17 5263 5721 567686062 567685621 6.810000e-119 438.0
8 TraesCS4B01G058500 chr4A 90.698 129 8 2 4040 4164 567687861 567687733 9.860000e-38 169.0
9 TraesCS4B01G058500 chr4A 83.582 134 8 7 3213 3332 567689453 567689320 4.680000e-21 113.0
10 TraesCS4B01G058500 chr4A 87.097 93 12 0 123 215 567692474 567692382 7.840000e-19 106.0
11 TraesCS4B01G058500 chr4D 89.707 1535 81 37 427 1935 34660045 34661528 0.000000e+00 1888.0
12 TraesCS4B01G058500 chr4D 93.359 1280 43 15 2150 3412 34661896 34663150 0.000000e+00 1855.0
13 TraesCS4B01G058500 chr4D 93.911 969 47 5 4149 5116 34664105 34665062 0.000000e+00 1452.0
14 TraesCS4B01G058500 chr4D 93.734 766 25 10 3396 4144 34663204 34663963 0.000000e+00 1127.0
15 TraesCS4B01G058500 chr4D 90.719 334 16 8 5390 5721 34665670 34665990 1.140000e-116 431.0
16 TraesCS4B01G058500 chr4D 98.165 109 2 0 2005 2113 34661787 34661895 2.100000e-44 191.0
17 TraesCS4B01G058500 chr4D 95.050 101 5 0 1933 2033 34661686 34661786 5.930000e-35 159.0
18 TraesCS4B01G058500 chr5B 89.375 160 9 6 5128 5285 299602222 299602375 1.630000e-45 195.0
19 TraesCS4B01G058500 chr7B 88.199 161 13 4 5128 5288 78552429 78552583 2.720000e-43 187.0
20 TraesCS4B01G058500 chr2A 88.199 161 13 4 5128 5287 141506317 141506472 2.720000e-43 187.0
21 TraesCS4B01G058500 chr2A 100.000 29 0 0 328 356 14805867 14805839 3.000000e-03 54.7
22 TraesCS4B01G058500 chr1B 87.500 168 14 5 5121 5288 632020920 632021080 2.720000e-43 187.0
23 TraesCS4B01G058500 chr1B 100.000 28 0 0 329 356 120967798 120967825 1.000000e-02 52.8
24 TraesCS4B01G058500 chr3B 85.955 178 19 5 5115 5289 404830303 404830477 9.790000e-43 185.0
25 TraesCS4B01G058500 chr3D 87.730 163 13 6 5130 5289 315480578 315480420 3.520000e-42 183.0
26 TraesCS4B01G058500 chr1D 88.199 161 10 7 5127 5285 7349702 7349855 3.520000e-42 183.0
27 TraesCS4B01G058500 chr1D 92.105 38 3 0 316 353 476706552 476706589 3.000000e-03 54.7
28 TraesCS4B01G058500 chr2D 87.349 166 12 7 5123 5285 617101220 617101061 1.270000e-41 182.0
29 TraesCS4B01G058500 chr1A 88.525 61 6 1 1258 1318 4556425 4556484 7.950000e-09 73.1
30 TraesCS4B01G058500 chr5D 95.000 40 2 0 315 354 319252832 319252793 4.790000e-06 63.9
31 TraesCS4B01G058500 chr5A 86.792 53 7 0 249 301 69097195 69097143 6.190000e-05 60.2
32 TraesCS4B01G058500 chr6B 92.500 40 3 0 316 355 637125239 637125200 2.230000e-04 58.4
33 TraesCS4B01G058500 chr6D 100.000 29 0 0 327 355 16509865 16509837 3.000000e-03 54.7
34 TraesCS4B01G058500 chr6D 100.000 29 0 0 327 355 422327570 422327598 3.000000e-03 54.7
35 TraesCS4B01G058500 chr6D 100.000 29 0 0 327 355 422936377 422936349 3.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G058500 chr4B 49735145 49740865 5720 False 10565.000000 10565 100.000000 1 5721 1 chr4B.!!$F1 5720
1 TraesCS4B01G058500 chr4A 567685621 567692474 6853 True 832.666667 3290 90.424444 123 5721 9 chr4A.!!$R1 5598
2 TraesCS4B01G058500 chr4D 34660045 34665990 5945 False 1014.714286 1888 93.520714 427 5721 7 chr4D.!!$F1 5294

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
645 649 0.094730 CGAAAGAATCCAACGGACGC 59.905 55.000 0.0 0.0 32.98 5.19 F
1347 1385 0.032952 TCTGTTACGGAAAGCAGCGT 59.967 50.000 0.0 0.0 0.00 5.07 F
2134 2362 0.593128 CCACAGGAAGAAAACTGCCG 59.407 55.000 0.0 0.0 38.25 5.69 F
2139 2367 0.668535 GGAAGAAAACTGCCGTGCTT 59.331 50.000 0.0 0.0 0.00 3.91 F
3857 4972 1.134521 TGTCCCACCTAACATGATCGC 60.135 52.381 0.0 0.0 0.00 4.58 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1499 1537 0.917259 GCAGTGCTCGTGTAATCTCG 59.083 55.000 8.18 0.0 0.00 4.04 R
3278 3552 1.261619 GCCAGAACATATAGCACACGC 59.738 52.381 0.00 0.0 38.99 5.34 R
3965 5092 0.114168 TCCCATGGAAACCCCTTGTG 59.886 55.000 15.22 0.0 38.15 3.33 R
4096 5224 1.419762 TGCTTCACCCAGAGTAGCAAA 59.580 47.619 0.00 0.0 37.21 3.68 R
5383 7165 0.390866 AGTGCATCAGCTGAACCTCG 60.391 55.000 22.50 8.2 42.74 4.63 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 7.760131 CAACAATTGTGAAGTCTGAACATTT 57.240 32.000 12.82 0.00 0.00 2.32
25 26 7.614908 CAACAATTGTGAAGTCTGAACATTTG 58.385 34.615 12.82 14.94 39.39 2.32
26 27 6.866480 ACAATTGTGAAGTCTGAACATTTGT 58.134 32.000 11.07 15.76 40.66 2.83
27 28 7.322664 ACAATTGTGAAGTCTGAACATTTGTT 58.677 30.769 11.07 0.00 41.76 2.83
28 29 7.276218 ACAATTGTGAAGTCTGAACATTTGTTG 59.724 33.333 11.07 9.66 41.76 3.33
29 30 6.507958 TTGTGAAGTCTGAACATTTGTTGA 57.492 33.333 0.00 0.00 38.56 3.18
30 31 5.879237 TGTGAAGTCTGAACATTTGTTGAC 58.121 37.500 0.00 3.58 38.56 3.18
31 32 5.647658 TGTGAAGTCTGAACATTTGTTGACT 59.352 36.000 9.44 9.44 40.66 3.41
32 33 6.150976 TGTGAAGTCTGAACATTTGTTGACTT 59.849 34.615 20.35 20.35 45.63 3.01
35 36 6.369059 AGTCTGAACATTTGTTGACTTCTG 57.631 37.500 9.44 0.00 37.76 3.02
36 37 6.115446 AGTCTGAACATTTGTTGACTTCTGA 58.885 36.000 9.44 0.00 37.76 3.27
37 38 6.599244 AGTCTGAACATTTGTTGACTTCTGAA 59.401 34.615 9.44 0.00 37.76 3.02
38 39 7.121168 AGTCTGAACATTTGTTGACTTCTGAAA 59.879 33.333 9.44 0.00 37.76 2.69
39 40 7.917505 GTCTGAACATTTGTTGACTTCTGAAAT 59.082 33.333 0.00 0.00 38.56 2.17
40 41 9.119418 TCTGAACATTTGTTGACTTCTGAAATA 57.881 29.630 0.00 0.00 38.56 1.40
41 42 9.903682 CTGAACATTTGTTGACTTCTGAAATAT 57.096 29.630 0.00 0.00 38.56 1.28
49 50 9.739276 TTGTTGACTTCTGAAATATATTCAGGT 57.261 29.630 15.86 8.52 44.43 4.00
50 51 9.166173 TGTTGACTTCTGAAATATATTCAGGTG 57.834 33.333 15.86 11.80 44.43 4.00
51 52 8.616076 GTTGACTTCTGAAATATATTCAGGTGG 58.384 37.037 15.86 9.89 44.43 4.61
52 53 7.282585 TGACTTCTGAAATATATTCAGGTGGG 58.717 38.462 15.86 8.04 44.43 4.61
53 54 7.127186 TGACTTCTGAAATATATTCAGGTGGGA 59.873 37.037 15.86 0.00 44.43 4.37
54 55 7.283329 ACTTCTGAAATATATTCAGGTGGGAC 58.717 38.462 15.86 0.00 44.43 4.46
55 56 6.187727 TCTGAAATATATTCAGGTGGGACC 57.812 41.667 15.86 0.00 44.43 4.46
56 57 5.073144 TCTGAAATATATTCAGGTGGGACCC 59.927 44.000 15.86 2.45 44.43 4.46
57 58 4.105697 TGAAATATATTCAGGTGGGACCCC 59.894 45.833 8.45 2.69 39.75 4.95
58 59 2.127651 TATATTCAGGTGGGACCCCC 57.872 55.000 8.45 9.07 45.71 5.40
79 80 2.273776 CCCCCACACACACACACA 59.726 61.111 0.00 0.00 0.00 3.72
80 81 2.118404 CCCCCACACACACACACAC 61.118 63.158 0.00 0.00 0.00 3.82
81 82 1.377856 CCCCACACACACACACACA 60.378 57.895 0.00 0.00 0.00 3.72
82 83 1.653094 CCCCACACACACACACACAC 61.653 60.000 0.00 0.00 0.00 3.82
83 84 0.957888 CCCACACACACACACACACA 60.958 55.000 0.00 0.00 0.00 3.72
84 85 1.093972 CCACACACACACACACACAT 58.906 50.000 0.00 0.00 0.00 3.21
85 86 1.472082 CCACACACACACACACACATT 59.528 47.619 0.00 0.00 0.00 2.71
86 87 2.094803 CCACACACACACACACACATTT 60.095 45.455 0.00 0.00 0.00 2.32
87 88 3.170505 CACACACACACACACACATTTC 58.829 45.455 0.00 0.00 0.00 2.17
88 89 2.816672 ACACACACACACACACATTTCA 59.183 40.909 0.00 0.00 0.00 2.69
89 90 3.254411 ACACACACACACACACATTTCAA 59.746 39.130 0.00 0.00 0.00 2.69
90 91 4.233005 CACACACACACACACATTTCAAA 58.767 39.130 0.00 0.00 0.00 2.69
91 92 4.683320 CACACACACACACACATTTCAAAA 59.317 37.500 0.00 0.00 0.00 2.44
92 93 5.176406 CACACACACACACACATTTCAAAAA 59.824 36.000 0.00 0.00 0.00 1.94
93 94 5.404968 ACACACACACACACATTTCAAAAAG 59.595 36.000 0.00 0.00 0.00 2.27
94 95 5.404968 CACACACACACACATTTCAAAAAGT 59.595 36.000 0.00 0.00 0.00 2.66
95 96 6.584184 CACACACACACACATTTCAAAAAGTA 59.416 34.615 0.00 0.00 0.00 2.24
96 97 7.115520 CACACACACACACATTTCAAAAAGTAA 59.884 33.333 0.00 0.00 0.00 2.24
97 98 7.653713 ACACACACACACATTTCAAAAAGTAAA 59.346 29.630 0.00 0.00 0.00 2.01
98 99 8.491152 CACACACACACATTTCAAAAAGTAAAA 58.509 29.630 0.00 0.00 0.00 1.52
99 100 9.213799 ACACACACACATTTCAAAAAGTAAAAT 57.786 25.926 0.00 0.00 0.00 1.82
171 172 0.759436 GAAGATCGGGCCACCCTAGA 60.759 60.000 4.39 0.00 42.67 2.43
174 175 1.003051 ATCGGGCCACCCTAGAGTT 59.997 57.895 4.39 0.00 42.67 3.01
176 177 1.221021 CGGGCCACCCTAGAGTTTC 59.779 63.158 4.39 0.00 42.67 2.78
186 187 5.403512 CACCCTAGAGTTTCCCCTATATCA 58.596 45.833 0.00 0.00 0.00 2.15
212 213 4.771114 TGGTATGTACTCCCTCCATTTG 57.229 45.455 0.00 0.00 0.00 2.32
215 216 5.727279 TGGTATGTACTCCCTCCATTTGTAA 59.273 40.000 0.00 0.00 0.00 2.41
216 217 6.388689 TGGTATGTACTCCCTCCATTTGTAAT 59.611 38.462 0.00 0.00 0.00 1.89
217 218 7.092174 TGGTATGTACTCCCTCCATTTGTAATT 60.092 37.037 0.00 0.00 0.00 1.40
218 219 8.434392 GGTATGTACTCCCTCCATTTGTAATTA 58.566 37.037 0.00 0.00 0.00 1.40
225 226 7.931948 ACTCCCTCCATTTGTAATTATAAGACG 59.068 37.037 0.00 0.00 0.00 4.18
226 227 7.798071 TCCCTCCATTTGTAATTATAAGACGT 58.202 34.615 0.00 0.00 0.00 4.34
227 228 8.269317 TCCCTCCATTTGTAATTATAAGACGTT 58.731 33.333 0.00 0.00 0.00 3.99
228 229 8.899771 CCCTCCATTTGTAATTATAAGACGTTT 58.100 33.333 0.00 0.00 0.00 3.60
240 241 9.935682 AATTATAAGACGTTTTAGATGCACATG 57.064 29.630 4.75 0.00 0.00 3.21
241 242 8.710835 TTATAAGACGTTTTAGATGCACATGA 57.289 30.769 0.00 0.00 0.00 3.07
242 243 5.940192 AAGACGTTTTAGATGCACATGAA 57.060 34.783 0.00 0.00 0.00 2.57
243 244 6.500684 AAGACGTTTTAGATGCACATGAAT 57.499 33.333 0.00 0.00 0.00 2.57
244 245 7.609760 AAGACGTTTTAGATGCACATGAATA 57.390 32.000 0.00 0.00 0.00 1.75
245 246 7.609760 AGACGTTTTAGATGCACATGAATAA 57.390 32.000 0.00 0.00 0.00 1.40
246 247 8.039603 AGACGTTTTAGATGCACATGAATAAA 57.960 30.769 0.00 0.00 0.00 1.40
247 248 8.177663 AGACGTTTTAGATGCACATGAATAAAG 58.822 33.333 0.00 0.00 0.00 1.85
248 249 8.039603 ACGTTTTAGATGCACATGAATAAAGA 57.960 30.769 0.00 0.00 0.00 2.52
249 250 8.677300 ACGTTTTAGATGCACATGAATAAAGAT 58.323 29.630 0.00 0.00 0.00 2.40
250 251 8.950961 CGTTTTAGATGCACATGAATAAAGATG 58.049 33.333 0.00 0.00 0.00 2.90
253 254 8.969260 TTAGATGCACATGAATAAAGATGAGT 57.031 30.769 0.00 0.00 0.00 3.41
254 255 7.260558 AGATGCACATGAATAAAGATGAGTG 57.739 36.000 0.00 0.00 0.00 3.51
255 256 7.052248 AGATGCACATGAATAAAGATGAGTGA 58.948 34.615 0.00 0.00 0.00 3.41
256 257 7.555195 AGATGCACATGAATAAAGATGAGTGAA 59.445 33.333 0.00 0.00 0.00 3.18
257 258 7.634671 TGCACATGAATAAAGATGAGTGAAT 57.365 32.000 0.00 0.00 0.00 2.57
258 259 8.735692 TGCACATGAATAAAGATGAGTGAATA 57.264 30.769 0.00 0.00 0.00 1.75
259 260 9.346005 TGCACATGAATAAAGATGAGTGAATAT 57.654 29.630 0.00 0.00 0.00 1.28
274 275 8.234887 TGAGTGAATATACACACTAAAACACG 57.765 34.615 11.85 0.00 45.54 4.49
275 276 7.868922 TGAGTGAATATACACACTAAAACACGT 59.131 33.333 11.85 0.00 45.54 4.49
276 277 8.236084 AGTGAATATACACACTAAAACACGTC 57.764 34.615 10.63 0.00 44.06 4.34
277 278 8.086522 AGTGAATATACACACTAAAACACGTCT 58.913 33.333 10.63 0.00 44.06 4.18
278 279 8.160342 GTGAATATACACACTAAAACACGTCTG 58.840 37.037 0.00 0.00 40.11 3.51
279 280 7.329962 TGAATATACACACTAAAACACGTCTGG 59.670 37.037 0.00 0.00 0.00 3.86
280 281 3.530265 ACACACTAAAACACGTCTGGA 57.470 42.857 0.00 0.00 0.00 3.86
281 282 4.067972 ACACACTAAAACACGTCTGGAT 57.932 40.909 0.00 0.00 0.00 3.41
282 283 5.204409 ACACACTAAAACACGTCTGGATA 57.796 39.130 0.00 0.00 0.00 2.59
283 284 4.986659 ACACACTAAAACACGTCTGGATAC 59.013 41.667 0.00 0.00 0.00 2.24
357 359 8.674925 TTAGGAACAGAGGGAGTATCTTTTTA 57.325 34.615 0.00 0.00 33.73 1.52
360 362 9.453830 AGGAACAGAGGGAGTATCTTTTTATAT 57.546 33.333 0.00 0.00 33.73 0.86
420 423 2.755836 GTGCATTGTGAACGAGTGTT 57.244 45.000 0.00 0.00 42.23 3.32
421 424 3.065019 GTGCATTGTGAACGAGTGTTT 57.935 42.857 0.00 0.00 38.78 2.83
424 427 3.119673 TGCATTGTGAACGAGTGTTTGTT 60.120 39.130 0.00 0.00 38.78 2.83
486 490 3.241067 TCAACGTGGCTATGAACCTAC 57.759 47.619 0.00 0.00 0.00 3.18
568 572 0.178961 GTTTCAGGAAACCAGCCCCT 60.179 55.000 12.72 0.00 43.52 4.79
601 605 3.105157 CAAAGCCGCGCGCAAAAT 61.105 55.556 32.61 11.51 41.38 1.82
618 622 2.556534 AATAACGGACGGACGAGAAG 57.443 50.000 8.01 0.00 37.61 2.85
627 631 1.444553 GGACGAGAAGTGCTCCACG 60.445 63.158 0.00 0.00 40.70 4.94
631 635 1.063806 CGAGAAGTGCTCCACGAAAG 58.936 55.000 0.00 0.00 40.70 2.62
645 649 0.094730 CGAAAGAATCCAACGGACGC 59.905 55.000 0.00 0.00 32.98 5.19
892 913 4.760047 GCAGAAGCCGGCGGAGAA 62.760 66.667 33.44 0.00 33.58 2.87
1167 1204 2.841215 CTTCCCCTGTTACGTTGTTCA 58.159 47.619 0.00 0.00 0.00 3.18
1168 1205 3.207778 CTTCCCCTGTTACGTTGTTCAA 58.792 45.455 0.00 0.00 0.00 2.69
1169 1206 2.563702 TCCCCTGTTACGTTGTTCAAC 58.436 47.619 0.00 5.70 0.00 3.18
1170 1207 1.605232 CCCCTGTTACGTTGTTCAACC 59.395 52.381 9.62 0.00 0.00 3.77
1176 1213 3.440872 TGTTACGTTGTTCAACCAGCTTT 59.559 39.130 9.62 0.00 0.00 3.51
1191 1228 7.284489 TCAACCAGCTTTGTACATTTAGTTCTT 59.716 33.333 0.00 0.00 0.00 2.52
1248 1286 4.041740 TCGCTTGCTCGTTTAGTATCAT 57.958 40.909 0.00 0.00 0.00 2.45
1284 1322 2.128771 TGCTCCATTTAGTTCTGGCC 57.871 50.000 0.00 0.00 32.30 5.36
1325 1363 3.181397 CATTCACAATTCCGCATCAACC 58.819 45.455 0.00 0.00 0.00 3.77
1326 1364 1.173043 TCACAATTCCGCATCAACCC 58.827 50.000 0.00 0.00 0.00 4.11
1327 1365 0.179166 CACAATTCCGCATCAACCCG 60.179 55.000 0.00 0.00 0.00 5.28
1334 1372 0.390603 CCGCATCAACCCGTCTGTTA 60.391 55.000 0.00 0.00 0.00 2.41
1347 1385 0.032952 TCTGTTACGGAAAGCAGCGT 59.967 50.000 0.00 0.00 0.00 5.07
1366 1404 3.057946 GCGTTGCTCTTCTGAAGGATTTT 60.058 43.478 16.83 0.00 0.00 1.82
1368 1406 4.023707 CGTTGCTCTTCTGAAGGATTTTGT 60.024 41.667 16.83 0.00 0.00 2.83
1381 1419 7.147312 TGAAGGATTTTGTGTTTCTTATGCTG 58.853 34.615 0.00 0.00 0.00 4.41
1392 1430 7.147983 TGTGTTTCTTATGCTGTTTACAACCTT 60.148 33.333 0.00 0.00 0.00 3.50
1410 1448 4.457466 ACCTTCTGTGGTTTGAAATACGT 58.543 39.130 0.00 0.00 36.89 3.57
1411 1449 5.613329 ACCTTCTGTGGTTTGAAATACGTA 58.387 37.500 0.00 0.00 36.89 3.57
1412 1450 5.467735 ACCTTCTGTGGTTTGAAATACGTAC 59.532 40.000 0.00 0.00 36.89 3.67
1547 1585 6.120220 GGGTAAATGTTATGCTTAGGACTGT 58.880 40.000 0.00 0.00 0.00 3.55
1559 1597 4.220163 GCTTAGGACTGTACTACCACACTT 59.780 45.833 0.00 0.00 0.00 3.16
1563 1601 3.193056 GGACTGTACTACCACACTTCCTC 59.807 52.174 0.00 0.00 0.00 3.71
1564 1602 3.163467 ACTGTACTACCACACTTCCTCC 58.837 50.000 0.00 0.00 0.00 4.30
1600 1638 1.411246 TGTTGCTACGACCTGTCAGTT 59.589 47.619 0.00 0.00 0.00 3.16
1615 1653 5.986135 CCTGTCAGTTATATGAGGTTACTGC 59.014 44.000 0.00 0.00 36.91 4.40
1674 1712 5.179368 TCAACTTGCTCGAAGATAAAAGGTG 59.821 40.000 0.00 0.00 38.39 4.00
1676 1714 4.691216 ACTTGCTCGAAGATAAAAGGTGTC 59.309 41.667 0.00 0.00 35.42 3.67
1791 1829 5.479724 GGTTCTACACTCAGGTACCTTACTT 59.520 44.000 13.15 0.00 0.00 2.24
1798 1836 6.552350 ACACTCAGGTACCTTACTTAAGTCAA 59.448 38.462 13.15 4.58 0.00 3.18
1804 1842 9.886132 CAGGTACCTTACTTAAGTCAATGTTAT 57.114 33.333 13.15 0.00 0.00 1.89
1867 1905 6.294342 CGGCATTTTAGATCATCATGATTGGT 60.294 38.462 5.16 0.00 37.20 3.67
1874 1912 4.643334 AGATCATCATGATTGGTGGTTGTG 59.357 41.667 5.16 0.00 37.20 3.33
1911 1950 7.176690 CCCCAAATTTGTGTTTATGTCTAGAGT 59.823 37.037 16.73 0.00 0.00 3.24
2134 2362 0.593128 CCACAGGAAGAAAACTGCCG 59.407 55.000 0.00 0.00 38.25 5.69
2139 2367 0.668535 GGAAGAAAACTGCCGTGCTT 59.331 50.000 0.00 0.00 0.00 3.91
2148 2376 2.417719 ACTGCCGTGCTTTCTCTAAAG 58.582 47.619 0.00 0.00 44.21 1.85
2204 2432 8.443937 GTTCAGTTATTAGTCCAATGTGAACTC 58.556 37.037 0.00 0.00 38.52 3.01
2513 2741 6.870971 TTGAACTGTTCACACTATTTACCC 57.129 37.500 21.95 0.00 39.87 3.69
2522 2750 9.629878 TGTTCACACTATTTACCCTTTTAGAAA 57.370 29.630 0.00 0.00 0.00 2.52
2606 2865 7.132213 CGGTAAATGTAATGTGAATCCATGAC 58.868 38.462 0.00 0.00 0.00 3.06
2648 2907 9.722184 AAATTAGTAACTTCTTGTCCTAAGTCC 57.278 33.333 0.00 0.00 34.91 3.85
2649 2908 8.667592 ATTAGTAACTTCTTGTCCTAAGTCCT 57.332 34.615 0.00 0.00 34.91 3.85
2650 2909 9.765295 ATTAGTAACTTCTTGTCCTAAGTCCTA 57.235 33.333 0.00 0.00 34.91 2.94
2651 2910 9.592196 TTAGTAACTTCTTGTCCTAAGTCCTAA 57.408 33.333 0.00 0.00 34.91 2.69
2655 2914 3.447950 TCTTGTCCTAAGTCCTAACCCC 58.552 50.000 0.00 0.00 0.00 4.95
2658 2917 2.908351 TGTCCTAAGTCCTAACCCCAAC 59.092 50.000 0.00 0.00 0.00 3.77
2692 2951 5.705441 TCAAACATTGCCCTAAGAGTTACTG 59.295 40.000 0.00 0.00 0.00 2.74
2693 2952 5.499004 AACATTGCCCTAAGAGTTACTGA 57.501 39.130 0.00 0.00 0.00 3.41
2708 2967 6.578163 AGTTACTGACTCTGTTTACTCCTC 57.422 41.667 0.00 0.00 31.20 3.71
2796 3055 4.629200 CGAGAGAGGAACAAATTCAGGAAG 59.371 45.833 0.00 0.00 36.46 3.46
2889 3148 2.099263 GCAGACAGATACGCCTAACTCA 59.901 50.000 0.00 0.00 0.00 3.41
2955 3214 6.349300 GGGTTATCCTATGTCGCATCATTAT 58.651 40.000 0.00 0.00 0.00 1.28
3160 3419 1.603802 ACTCGTTGTGCACTTGAATGG 59.396 47.619 19.41 6.50 0.00 3.16
3169 3428 1.684248 GCACTTGAATGGGAGCCTCAT 60.684 52.381 0.00 0.00 0.00 2.90
3170 3429 2.421952 GCACTTGAATGGGAGCCTCATA 60.422 50.000 0.00 0.00 0.00 2.15
3171 3430 3.749954 GCACTTGAATGGGAGCCTCATAT 60.750 47.826 0.00 0.00 0.00 1.78
3172 3431 4.467769 CACTTGAATGGGAGCCTCATATT 58.532 43.478 0.00 0.00 0.00 1.28
3173 3432 4.891756 CACTTGAATGGGAGCCTCATATTT 59.108 41.667 0.00 0.00 0.00 1.40
3174 3433 4.891756 ACTTGAATGGGAGCCTCATATTTG 59.108 41.667 0.00 0.00 0.00 2.32
3175 3434 4.794311 TGAATGGGAGCCTCATATTTGA 57.206 40.909 0.00 0.00 0.00 2.69
3176 3435 5.128033 TGAATGGGAGCCTCATATTTGAA 57.872 39.130 0.00 0.00 0.00 2.69
3177 3436 5.708544 TGAATGGGAGCCTCATATTTGAAT 58.291 37.500 0.00 0.00 0.00 2.57
3178 3437 5.537295 TGAATGGGAGCCTCATATTTGAATG 59.463 40.000 0.00 0.00 0.00 2.67
3179 3438 4.794311 TGGGAGCCTCATATTTGAATGA 57.206 40.909 0.00 0.00 34.72 2.57
3278 3552 9.976511 AGCATTTCATATGAACATCCTTAATTG 57.023 29.630 17.76 2.42 33.13 2.32
3286 3560 2.436417 ACATCCTTAATTGCGTGTGCT 58.564 42.857 0.00 0.00 43.34 4.40
3287 3561 3.605634 ACATCCTTAATTGCGTGTGCTA 58.394 40.909 0.00 0.00 43.34 3.49
3306 3580 5.062308 GTGCTATATGTTCTGGCTTATACGC 59.938 44.000 0.00 0.00 0.00 4.42
3392 4437 8.574196 TCACTTGTTTTAAGAAAATAAGCTGC 57.426 30.769 16.43 0.00 46.90 5.25
3414 4529 4.096984 GCCATACTTTGCTTCAGTAATGCT 59.903 41.667 0.00 0.00 30.48 3.79
3426 4541 8.673711 TGCTTCAGTAATGCTAATTTTTACGAT 58.326 29.630 0.00 0.00 32.41 3.73
3536 4651 5.300034 GGTGTCAGGATCATTATTGCATTGA 59.700 40.000 0.00 0.00 0.00 2.57
3563 4678 6.420604 GTGCTGTGCTGTGTAAAATATTTGTT 59.579 34.615 0.39 0.00 0.00 2.83
3588 4703 3.297134 TGCTCAAACAAAGAGGTTCCT 57.703 42.857 0.00 0.00 33.72 3.36
3600 4715 7.344134 ACAAAGAGGTTCCTAGTTTGTTACTT 58.656 34.615 18.37 3.24 37.95 2.24
3644 4759 8.932945 TGAAGTACTTTGAACAGCATCTATAG 57.067 34.615 10.02 0.00 0.00 1.31
3665 4780 9.559958 CTATAGCACCAAACTTGTTCTTTATTG 57.440 33.333 0.00 0.00 0.00 1.90
3857 4972 1.134521 TGTCCCACCTAACATGATCGC 60.135 52.381 0.00 0.00 0.00 4.58
3900 5015 8.253113 GGGTTGATCTTTTTATGTTGATCATGT 58.747 33.333 0.00 0.00 42.92 3.21
3901 5016 9.294030 GGTTGATCTTTTTATGTTGATCATGTC 57.706 33.333 0.00 0.00 42.92 3.06
4096 5224 7.178451 ACCCAAATTATCTCTCCAATTTTTCGT 59.822 33.333 0.00 0.00 33.23 3.85
4326 5608 8.754991 AGCATCTTGTATCACTAGTTAGTAGT 57.245 34.615 0.00 0.00 43.31 2.73
4338 5620 9.085645 TCACTAGTTAGTAGTCTGGAAAAATCA 57.914 33.333 0.00 0.00 40.27 2.57
4350 5632 5.707298 TCTGGAAAAATCAGAAGGACACATC 59.293 40.000 0.00 0.00 38.20 3.06
4373 5655 1.257743 TGCTCTAGACCTCCACACAC 58.742 55.000 0.00 0.00 0.00 3.82
4556 5838 2.019948 GGTAGTTACCGCCTTCCTTG 57.980 55.000 0.00 0.00 36.50 3.61
4557 5839 1.366679 GTAGTTACCGCCTTCCTTGC 58.633 55.000 0.00 0.00 0.00 4.01
4567 5849 1.956477 GCCTTCCTTGCTTTCTTCACA 59.044 47.619 0.00 0.00 0.00 3.58
4583 5865 4.576053 TCTTCACAGACACCATGTTTCTTG 59.424 41.667 0.00 0.00 0.00 3.02
4600 5882 6.809196 TGTTTCTTGGTACACAATTGTTTGTC 59.191 34.615 8.77 1.11 44.24 3.18
4612 5897 6.412653 CACAATTGTTTGTCGTTGTAGTTACC 59.587 38.462 8.77 0.00 44.24 2.85
4678 6101 5.053978 AGTTCAAGGAGGTTGTCAAATCT 57.946 39.130 0.00 0.00 37.43 2.40
4681 6104 7.234355 AGTTCAAGGAGGTTGTCAAATCTTAT 58.766 34.615 0.00 0.00 37.43 1.73
4687 6110 3.941483 AGGTTGTCAAATCTTATGAGGCG 59.059 43.478 0.00 0.00 0.00 5.52
4693 6116 7.482654 TGTCAAATCTTATGAGGCGATAAAG 57.517 36.000 0.00 0.00 0.00 1.85
4741 6164 2.346803 TGCGTTTGTCTATTGGAGCTC 58.653 47.619 4.71 4.71 0.00 4.09
4762 6185 0.882042 CAGTGAAGACTTGCGCCAGT 60.882 55.000 14.83 14.83 0.00 4.00
4780 6203 0.820482 GTTTGTTACAGCCCCGGTGT 60.820 55.000 0.00 0.06 46.27 4.16
4781 6204 0.763652 TTTGTTACAGCCCCGGTGTA 59.236 50.000 0.00 0.00 42.67 2.90
4782 6205 0.035176 TTGTTACAGCCCCGGTGTAC 59.965 55.000 0.00 0.00 44.44 2.90
4783 6206 1.446618 GTTACAGCCCCGGTGTACG 60.447 63.158 0.00 0.00 44.44 3.67
4784 6207 3.299524 TTACAGCCCCGGTGTACGC 62.300 63.158 0.00 0.00 44.44 4.42
4786 6209 4.690719 CAGCCCCGGTGTACGCAA 62.691 66.667 8.97 0.00 42.52 4.85
4787 6210 3.712907 AGCCCCGGTGTACGCAAT 61.713 61.111 8.97 0.00 42.52 3.56
4788 6211 2.748647 GCCCCGGTGTACGCAATT 60.749 61.111 8.97 0.00 42.52 2.32
4909 6332 0.532573 AGCACACGTCCCTGATGTAG 59.467 55.000 0.00 0.00 29.93 2.74
4910 6333 0.246635 GCACACGTCCCTGATGTAGT 59.753 55.000 0.00 0.00 29.93 2.73
4911 6334 1.475280 GCACACGTCCCTGATGTAGTA 59.525 52.381 0.00 0.00 29.93 1.82
5136 6588 8.623030 GTGTTTGTTGTAAAATTGTACTCCCTA 58.377 33.333 7.31 0.00 0.00 3.53
5137 6589 8.623030 TGTTTGTTGTAAAATTGTACTCCCTAC 58.377 33.333 7.31 1.89 0.00 3.18
5150 6604 9.706691 ATTGTACTCCCTACGTTCATAAATATG 57.293 33.333 0.00 0.00 35.04 1.78
5214 6668 7.821652 TGAAATGAGTGAACAAACACACTAAA 58.178 30.769 0.00 0.00 45.54 1.85
5215 6669 8.465999 TGAAATGAGTGAACAAACACACTAAAT 58.534 29.630 0.00 0.00 45.54 1.40
5216 6670 9.944663 GAAATGAGTGAACAAACACACTAAATA 57.055 29.630 0.00 0.00 45.54 1.40
5218 6672 9.897744 AATGAGTGAACAAACACACTAAATATG 57.102 29.630 0.00 0.00 45.54 1.78
5219 6673 7.359595 TGAGTGAACAAACACACTAAATATGC 58.640 34.615 0.00 0.00 45.54 3.14
5241 6696 7.024345 TGCCCATATACATCTGATTCAGAAT 57.976 36.000 19.73 13.37 44.04 2.40
5275 7026 8.018677 AGAACATCTTGTAGTATTTGTGAACG 57.981 34.615 0.00 0.00 0.00 3.95
5294 7045 5.768662 TGAACGGAAGGAGTATATACTGAGG 59.231 44.000 20.13 5.92 36.50 3.86
5295 7046 5.321934 ACGGAAGGAGTATATACTGAGGT 57.678 43.478 20.13 6.48 36.50 3.85
5296 7047 5.703310 ACGGAAGGAGTATATACTGAGGTT 58.297 41.667 20.13 7.56 36.50 3.50
5297 7048 6.134754 ACGGAAGGAGTATATACTGAGGTTT 58.865 40.000 20.13 6.83 36.50 3.27
5299 7050 6.924060 CGGAAGGAGTATATACTGAGGTTTTG 59.076 42.308 20.13 0.09 36.50 2.44
5301 7052 8.921205 GGAAGGAGTATATACTGAGGTTTTGTA 58.079 37.037 20.13 0.00 36.50 2.41
5302 7053 9.968870 GAAGGAGTATATACTGAGGTTTTGTAG 57.031 37.037 20.13 0.00 36.50 2.74
5307 7058 8.925338 AGTATATACTGAGGTTTTGTAGAAGGG 58.075 37.037 14.71 0.00 34.72 3.95
5310 7061 3.328050 ACTGAGGTTTTGTAGAAGGGGAG 59.672 47.826 0.00 0.00 0.00 4.30
5320 7071 8.674607 GTTTTGTAGAAGGGGAGTTTGTATATG 58.325 37.037 0.00 0.00 0.00 1.78
5352 7106 2.001872 CTATGCAGCAACGACACATCA 58.998 47.619 0.00 0.00 0.00 3.07
5363 7117 5.120830 GCAACGACACATCATTTAGAGAACT 59.879 40.000 0.00 0.00 0.00 3.01
5379 7161 9.897744 TTTAGAGAACTTGTAATGCAGAAAATG 57.102 29.630 0.00 0.00 0.00 2.32
5390 7172 2.253392 CAGAAAATGCTGCGAGGTTC 57.747 50.000 0.00 0.00 0.00 3.62
5391 7173 1.536766 CAGAAAATGCTGCGAGGTTCA 59.463 47.619 0.00 0.00 0.00 3.18
5392 7174 1.808945 AGAAAATGCTGCGAGGTTCAG 59.191 47.619 0.00 0.00 34.79 3.02
5397 7179 4.928398 CTGCGAGGTTCAGCTGAT 57.072 55.556 19.04 1.77 34.83 2.90
5398 7180 2.381109 CTGCGAGGTTCAGCTGATG 58.619 57.895 19.04 6.65 34.83 3.07
5399 7181 1.703438 CTGCGAGGTTCAGCTGATGC 61.703 60.000 19.04 16.24 40.05 3.91
5416 7198 4.910195 TGATGCACTATTGGTTCAGTCTT 58.090 39.130 0.00 0.00 0.00 3.01
5479 7275 1.092921 TTGTGGTGTCCGTCACAAGC 61.093 55.000 4.98 0.00 45.40 4.01
5512 7316 4.489810 ACATGCAGTTGTTCGTTTTCAAA 58.510 34.783 0.00 0.00 0.00 2.69
5547 7351 3.787001 AGCAGAACCCCCGCTAGC 61.787 66.667 4.06 4.06 33.25 3.42
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 7.276218 ACAAATGTTCAGACTTCACAATTGTTG 59.724 33.333 8.77 3.76 40.15 3.33
1 2 7.322664 ACAAATGTTCAGACTTCACAATTGTT 58.677 30.769 8.77 0.00 40.15 2.83
2 3 6.866480 ACAAATGTTCAGACTTCACAATTGT 58.134 32.000 4.92 4.92 38.92 2.71
3 4 7.488792 TCAACAAATGTTCAGACTTCACAATTG 59.511 33.333 3.24 3.24 37.35 2.32
4 5 7.489113 GTCAACAAATGTTCAGACTTCACAATT 59.511 33.333 8.64 0.00 35.83 2.32
5 6 6.974622 GTCAACAAATGTTCAGACTTCACAAT 59.025 34.615 8.64 0.00 35.83 2.71
6 7 6.150976 AGTCAACAAATGTTCAGACTTCACAA 59.849 34.615 11.42 0.00 37.76 3.33
7 8 5.647658 AGTCAACAAATGTTCAGACTTCACA 59.352 36.000 11.42 0.00 37.76 3.58
8 9 6.124088 AGTCAACAAATGTTCAGACTTCAC 57.876 37.500 11.42 0.00 37.76 3.18
9 10 6.757897 AAGTCAACAAATGTTCAGACTTCA 57.242 33.333 18.72 0.00 42.52 3.02
11 12 6.599244 TCAGAAGTCAACAAATGTTCAGACTT 59.401 34.615 22.01 22.01 45.63 3.01
12 13 6.115446 TCAGAAGTCAACAAATGTTCAGACT 58.885 36.000 11.42 11.42 40.66 3.24
13 14 6.363577 TCAGAAGTCAACAAATGTTCAGAC 57.636 37.500 8.09 8.09 35.83 3.51
14 15 7.389803 TTTCAGAAGTCAACAAATGTTCAGA 57.610 32.000 0.00 0.00 35.83 3.27
15 16 9.903682 ATATTTCAGAAGTCAACAAATGTTCAG 57.096 29.630 0.00 0.00 35.83 3.02
23 24 9.739276 ACCTGAATATATTTCAGAAGTCAACAA 57.261 29.630 20.22 0.00 46.57 2.83
24 25 9.166173 CACCTGAATATATTTCAGAAGTCAACA 57.834 33.333 20.22 2.37 46.57 3.33
25 26 8.616076 CCACCTGAATATATTTCAGAAGTCAAC 58.384 37.037 20.22 0.00 46.57 3.18
26 27 7.775093 CCCACCTGAATATATTTCAGAAGTCAA 59.225 37.037 20.22 0.00 46.57 3.18
27 28 7.127186 TCCCACCTGAATATATTTCAGAAGTCA 59.873 37.037 20.22 3.87 46.57 3.41
28 29 7.442666 GTCCCACCTGAATATATTTCAGAAGTC 59.557 40.741 20.22 0.07 46.57 3.01
29 30 7.283329 GTCCCACCTGAATATATTTCAGAAGT 58.717 38.462 20.22 12.40 46.57 3.01
30 31 6.712547 GGTCCCACCTGAATATATTTCAGAAG 59.287 42.308 20.22 14.47 46.57 2.85
31 32 6.410388 GGGTCCCACCTGAATATATTTCAGAA 60.410 42.308 20.22 0.00 46.57 3.02
32 33 5.073144 GGGTCCCACCTGAATATATTTCAGA 59.927 44.000 20.22 6.11 46.57 3.27
33 34 5.316987 GGGTCCCACCTGAATATATTTCAG 58.683 45.833 1.78 15.24 44.05 3.02
34 35 4.105697 GGGGTCCCACCTGAATATATTTCA 59.894 45.833 10.98 0.00 38.64 2.69
35 36 4.508584 GGGGGTCCCACCTGAATATATTTC 60.509 50.000 10.98 0.00 44.65 2.17
36 37 3.401342 GGGGGTCCCACCTGAATATATTT 59.599 47.826 10.98 0.00 44.65 1.40
37 38 2.993863 GGGGGTCCCACCTGAATATATT 59.006 50.000 10.98 0.00 44.65 1.28
38 39 2.644151 GGGGGTCCCACCTGAATATAT 58.356 52.381 10.98 0.00 44.65 0.86
39 40 2.127651 GGGGGTCCCACCTGAATATA 57.872 55.000 10.98 0.00 44.65 0.86
40 41 2.960710 GGGGGTCCCACCTGAATAT 58.039 57.895 10.98 0.00 44.65 1.28
41 42 4.512053 GGGGGTCCCACCTGAATA 57.488 61.111 10.98 0.00 44.65 1.75
62 63 2.118404 GTGTGTGTGTGTGTGGGGG 61.118 63.158 0.00 0.00 0.00 5.40
63 64 1.377856 TGTGTGTGTGTGTGTGGGG 60.378 57.895 0.00 0.00 0.00 4.96
64 65 0.957888 TGTGTGTGTGTGTGTGTGGG 60.958 55.000 0.00 0.00 0.00 4.61
65 66 1.093972 ATGTGTGTGTGTGTGTGTGG 58.906 50.000 0.00 0.00 0.00 4.17
66 67 2.917701 AATGTGTGTGTGTGTGTGTG 57.082 45.000 0.00 0.00 0.00 3.82
67 68 2.816672 TGAAATGTGTGTGTGTGTGTGT 59.183 40.909 0.00 0.00 0.00 3.72
68 69 3.484334 TGAAATGTGTGTGTGTGTGTG 57.516 42.857 0.00 0.00 0.00 3.82
69 70 4.511617 TTTGAAATGTGTGTGTGTGTGT 57.488 36.364 0.00 0.00 0.00 3.72
70 71 5.404968 ACTTTTTGAAATGTGTGTGTGTGTG 59.595 36.000 0.00 0.00 0.00 3.82
71 72 5.537188 ACTTTTTGAAATGTGTGTGTGTGT 58.463 33.333 0.00 0.00 0.00 3.72
72 73 7.573916 TTACTTTTTGAAATGTGTGTGTGTG 57.426 32.000 5.54 0.00 0.00 3.82
73 74 8.594881 TTTTACTTTTTGAAATGTGTGTGTGT 57.405 26.923 5.54 0.00 0.00 3.72
99 100 9.681692 CACAAAGATCAATTGAAACATGTTCTA 57.318 29.630 13.09 0.81 0.00 2.10
100 101 7.170320 GCACAAAGATCAATTGAAACATGTTCT 59.830 33.333 13.09 5.95 0.00 3.01
101 102 7.285788 GCACAAAGATCAATTGAAACATGTTC 58.714 34.615 13.09 3.52 0.00 3.18
102 103 6.203338 GGCACAAAGATCAATTGAAACATGTT 59.797 34.615 13.09 4.92 0.00 2.71
103 104 5.697633 GGCACAAAGATCAATTGAAACATGT 59.302 36.000 13.09 12.42 0.00 3.21
104 105 5.697178 TGGCACAAAGATCAATTGAAACATG 59.303 36.000 13.09 11.81 31.92 3.21
105 106 5.856156 TGGCACAAAGATCAATTGAAACAT 58.144 33.333 13.09 0.00 31.92 2.71
106 107 5.273674 TGGCACAAAGATCAATTGAAACA 57.726 34.783 13.09 9.14 31.92 2.83
107 108 4.687483 CCTGGCACAAAGATCAATTGAAAC 59.313 41.667 13.09 9.80 38.70 2.78
108 109 4.262549 CCCTGGCACAAAGATCAATTGAAA 60.263 41.667 13.09 0.00 38.70 2.69
109 110 3.258872 CCCTGGCACAAAGATCAATTGAA 59.741 43.478 13.09 0.00 38.70 2.69
110 111 2.827322 CCCTGGCACAAAGATCAATTGA 59.173 45.455 11.26 11.26 38.70 2.57
111 112 2.675889 GCCCTGGCACAAAGATCAATTG 60.676 50.000 2.58 0.00 38.70 2.32
112 113 1.551883 GCCCTGGCACAAAGATCAATT 59.448 47.619 2.58 0.00 38.70 2.32
113 114 1.188863 GCCCTGGCACAAAGATCAAT 58.811 50.000 2.58 0.00 38.70 2.57
114 115 2.657297 GCCCTGGCACAAAGATCAA 58.343 52.632 2.58 0.00 38.70 2.57
115 116 4.421365 GCCCTGGCACAAAGATCA 57.579 55.556 2.58 0.00 38.70 2.92
134 135 3.945921 TCTTCACGAACTAGATGATCCGT 59.054 43.478 0.00 0.00 0.00 4.69
135 136 4.553756 TCTTCACGAACTAGATGATCCG 57.446 45.455 0.00 0.00 0.00 4.18
136 137 5.150683 CGATCTTCACGAACTAGATGATCC 58.849 45.833 0.00 0.00 39.97 3.36
186 187 7.648177 AATGGAGGGAGTACATACCATATTT 57.352 36.000 0.00 0.00 37.18 1.40
215 216 9.325198 TCATGTGCATCTAAAACGTCTTATAAT 57.675 29.630 0.00 0.00 0.00 1.28
216 217 8.710835 TCATGTGCATCTAAAACGTCTTATAA 57.289 30.769 0.00 0.00 0.00 0.98
217 218 8.710835 TTCATGTGCATCTAAAACGTCTTATA 57.289 30.769 0.00 0.00 0.00 0.98
218 219 7.609760 TTCATGTGCATCTAAAACGTCTTAT 57.390 32.000 0.00 0.00 0.00 1.73
219 220 7.609760 ATTCATGTGCATCTAAAACGTCTTA 57.390 32.000 0.00 0.00 0.00 2.10
220 221 5.940192 TTCATGTGCATCTAAAACGTCTT 57.060 34.783 0.00 0.00 0.00 3.01
222 223 8.175069 TCTTTATTCATGTGCATCTAAAACGTC 58.825 33.333 0.00 0.00 0.00 4.34
223 224 8.039603 TCTTTATTCATGTGCATCTAAAACGT 57.960 30.769 0.00 0.00 0.00 3.99
224 225 8.950961 CATCTTTATTCATGTGCATCTAAAACG 58.049 33.333 0.00 0.00 0.00 3.60
227 228 9.399797 ACTCATCTTTATTCATGTGCATCTAAA 57.600 29.630 0.00 0.00 0.00 1.85
228 229 8.833493 CACTCATCTTTATTCATGTGCATCTAA 58.167 33.333 0.00 0.00 0.00 2.10
231 232 7.255491 TCACTCATCTTTATTCATGTGCATC 57.745 36.000 0.00 0.00 0.00 3.91
232 233 7.634671 TTCACTCATCTTTATTCATGTGCAT 57.365 32.000 0.00 0.00 0.00 3.96
233 234 7.634671 ATTCACTCATCTTTATTCATGTGCA 57.365 32.000 0.00 0.00 0.00 4.57
248 249 8.869897 CGTGTTTTAGTGTGTATATTCACTCAT 58.130 33.333 12.92 2.94 42.77 2.90
249 250 7.868922 ACGTGTTTTAGTGTGTATATTCACTCA 59.131 33.333 12.92 3.98 42.77 3.41
250 251 8.236084 ACGTGTTTTAGTGTGTATATTCACTC 57.764 34.615 12.92 9.62 42.77 3.51
251 252 8.086522 AGACGTGTTTTAGTGTGTATATTCACT 58.913 33.333 12.92 14.19 45.21 3.41
252 253 8.160342 CAGACGTGTTTTAGTGTGTATATTCAC 58.840 37.037 5.58 5.58 38.63 3.18
253 254 7.329962 CCAGACGTGTTTTAGTGTGTATATTCA 59.670 37.037 0.00 0.00 30.76 2.57
254 255 7.543172 TCCAGACGTGTTTTAGTGTGTATATTC 59.457 37.037 0.00 0.00 30.76 1.75
255 256 7.380536 TCCAGACGTGTTTTAGTGTGTATATT 58.619 34.615 0.00 0.00 30.76 1.28
256 257 6.927416 TCCAGACGTGTTTTAGTGTGTATAT 58.073 36.000 0.00 0.00 30.76 0.86
257 258 6.330004 TCCAGACGTGTTTTAGTGTGTATA 57.670 37.500 0.00 0.00 30.76 1.47
258 259 5.204409 TCCAGACGTGTTTTAGTGTGTAT 57.796 39.130 0.00 0.00 30.76 2.29
259 260 4.652421 TCCAGACGTGTTTTAGTGTGTA 57.348 40.909 0.00 0.00 30.76 2.90
260 261 3.530265 TCCAGACGTGTTTTAGTGTGT 57.470 42.857 0.00 0.00 30.76 3.72
261 262 4.986034 TGTATCCAGACGTGTTTTAGTGTG 59.014 41.667 0.00 0.00 0.00 3.82
262 263 5.204409 TGTATCCAGACGTGTTTTAGTGT 57.796 39.130 0.00 0.00 0.00 3.55
263 264 6.809689 TGTATGTATCCAGACGTGTTTTAGTG 59.190 38.462 0.00 0.00 35.54 2.74
264 265 6.927416 TGTATGTATCCAGACGTGTTTTAGT 58.073 36.000 0.00 0.00 35.54 2.24
265 266 7.821595 TTGTATGTATCCAGACGTGTTTTAG 57.178 36.000 0.00 0.00 35.54 1.85
266 267 8.780846 ATTTGTATGTATCCAGACGTGTTTTA 57.219 30.769 0.00 0.00 35.54 1.52
267 268 7.606456 AGATTTGTATGTATCCAGACGTGTTTT 59.394 33.333 0.00 0.00 35.54 2.43
268 269 7.103641 AGATTTGTATGTATCCAGACGTGTTT 58.896 34.615 0.00 0.00 35.54 2.83
269 270 6.640518 AGATTTGTATGTATCCAGACGTGTT 58.359 36.000 0.00 0.00 35.54 3.32
270 271 6.222038 AGATTTGTATGTATCCAGACGTGT 57.778 37.500 0.00 0.00 35.54 4.49
271 272 8.135529 TCTAAGATTTGTATGTATCCAGACGTG 58.864 37.037 0.00 0.00 35.54 4.49
272 273 8.234136 TCTAAGATTTGTATGTATCCAGACGT 57.766 34.615 0.00 0.00 35.54 4.34
273 274 9.529325 TTTCTAAGATTTGTATGTATCCAGACG 57.471 33.333 0.00 0.00 35.54 4.18
332 334 7.569599 AAAAAGATACTCCCTCTGTTCCTAA 57.430 36.000 0.00 0.00 0.00 2.69
390 393 1.135972 CACAATGCACGGCTGTACTTC 60.136 52.381 0.00 0.00 0.00 3.01
393 396 0.871722 TTCACAATGCACGGCTGTAC 59.128 50.000 0.00 0.00 0.00 2.90
398 401 1.154413 CTCGTTCACAATGCACGGC 60.154 57.895 0.00 0.00 37.59 5.68
420 423 8.306038 CCAATCAACTTTATCCAGATCAAACAA 58.694 33.333 0.00 0.00 0.00 2.83
421 424 7.669304 TCCAATCAACTTTATCCAGATCAAACA 59.331 33.333 0.00 0.00 0.00 2.83
424 427 9.919416 TTATCCAATCAACTTTATCCAGATCAA 57.081 29.630 0.00 0.00 0.00 2.57
486 490 1.014352 GATCGTCGGGGAAATGGTTG 58.986 55.000 0.00 0.00 0.00 3.77
513 517 9.745018 ATTAACATGGATTTCGATCTGGATATT 57.255 29.630 0.00 0.00 0.00 1.28
568 572 5.541845 CGGCTTTGGATTGATAGATAGACA 58.458 41.667 0.00 0.00 0.00 3.41
598 602 2.229784 ACTTCTCGTCCGTCCGTTATTT 59.770 45.455 0.00 0.00 0.00 1.40
599 603 1.815003 ACTTCTCGTCCGTCCGTTATT 59.185 47.619 0.00 0.00 0.00 1.40
600 604 1.131883 CACTTCTCGTCCGTCCGTTAT 59.868 52.381 0.00 0.00 0.00 1.89
601 605 0.518636 CACTTCTCGTCCGTCCGTTA 59.481 55.000 0.00 0.00 0.00 3.18
618 622 1.808411 TGGATTCTTTCGTGGAGCAC 58.192 50.000 0.00 0.00 0.00 4.40
627 631 0.094730 CGCGTCCGTTGGATTCTTTC 59.905 55.000 0.00 0.00 32.73 2.62
631 635 1.293267 TTTCCGCGTCCGTTGGATTC 61.293 55.000 4.92 0.00 32.73 2.52
960 981 2.136196 ATCTCCCGATTCGAGCTCGC 62.136 60.000 30.97 16.22 39.60 5.03
1009 1030 2.193248 GGATTTCCCCTCCTGCGG 59.807 66.667 0.00 0.00 0.00 5.69
1130 1157 1.831652 AAGCGAGAGGAAGGTGGGTG 61.832 60.000 0.00 0.00 0.00 4.61
1131 1158 1.536662 AAGCGAGAGGAAGGTGGGT 60.537 57.895 0.00 0.00 0.00 4.51
1167 1204 7.425606 CAAGAACTAAATGTACAAAGCTGGTT 58.574 34.615 0.00 1.02 0.00 3.67
1168 1205 6.515035 GCAAGAACTAAATGTACAAAGCTGGT 60.515 38.462 0.00 0.00 0.00 4.00
1169 1206 5.858581 GCAAGAACTAAATGTACAAAGCTGG 59.141 40.000 0.00 0.00 0.00 4.85
1170 1207 6.672147 AGCAAGAACTAAATGTACAAAGCTG 58.328 36.000 0.00 0.00 0.00 4.24
1191 1228 2.350192 CACACCGCGATTATTACAAGCA 59.650 45.455 8.23 0.00 0.00 3.91
1248 1286 0.810648 GCAAATCGTCATGGAAGCCA 59.189 50.000 0.00 0.00 38.19 4.75
1327 1365 0.438830 CGCTGCTTTCCGTAACAGAC 59.561 55.000 0.00 0.00 31.67 3.51
1344 1382 1.731720 ATCCTTCAGAAGAGCAACGC 58.268 50.000 12.14 0.00 0.00 4.84
1347 1385 4.889409 ACACAAAATCCTTCAGAAGAGCAA 59.111 37.500 12.14 0.00 0.00 3.91
1392 1430 5.410132 CCATGTACGTATTTCAAACCACAGA 59.590 40.000 0.00 0.00 0.00 3.41
1409 1447 4.142600 GGATTCAAGTCAAGTGCCATGTAC 60.143 45.833 0.00 0.00 0.00 2.90
1410 1448 4.009675 GGATTCAAGTCAAGTGCCATGTA 58.990 43.478 0.00 0.00 0.00 2.29
1411 1449 2.821969 GGATTCAAGTCAAGTGCCATGT 59.178 45.455 0.00 0.00 0.00 3.21
1412 1450 3.087031 AGGATTCAAGTCAAGTGCCATG 58.913 45.455 0.00 0.00 0.00 3.66
1499 1537 0.917259 GCAGTGCTCGTGTAATCTCG 59.083 55.000 8.18 0.00 0.00 4.04
1547 1585 3.170717 CAAGGGAGGAAGTGTGGTAGTA 58.829 50.000 0.00 0.00 0.00 1.82
1564 1602 3.716006 CACACCTCGCACGCAAGG 61.716 66.667 0.00 0.00 46.39 3.61
1615 1653 1.345415 ACAAAGAGGCCAAGCAATTGG 59.655 47.619 5.01 2.57 44.82 3.16
1674 1712 9.757227 ATGAAATGTAGCAGAAGATACTAAGAC 57.243 33.333 0.00 0.00 37.51 3.01
1798 1836 7.035612 GGGCAAATCGAAGAAGAAAATAACAT 58.964 34.615 0.00 0.00 43.58 2.71
1804 1842 3.496331 AGGGGCAAATCGAAGAAGAAAA 58.504 40.909 0.00 0.00 43.58 2.29
1867 1905 2.303175 GGGTAAACAAGCTCACAACCA 58.697 47.619 0.00 0.00 0.00 3.67
1874 1912 4.749598 CACAAATTTGGGGTAAACAAGCTC 59.250 41.667 21.74 0.00 0.00 4.09
1911 1950 9.502091 AACTACAAAACATAGTATTGCTGAAGA 57.498 29.630 0.00 0.00 32.47 2.87
2139 2367 7.308589 GGCAATACAAAAGTGAGCTTTAGAGAA 60.309 37.037 0.00 0.00 43.52 2.87
2148 2376 4.503741 TTCTGGCAATACAAAAGTGAGC 57.496 40.909 0.00 0.00 0.00 4.26
2204 2432 6.070767 TGGTTCTCCCTATGTCTTCAAAGTAG 60.071 42.308 0.00 0.00 0.00 2.57
2522 2750 9.807649 AGCGAGCATAATTTCAAAAATTCTAAT 57.192 25.926 1.16 0.00 0.00 1.73
2557 2785 2.397549 GCAATGTTCTGAGGCAACAAC 58.602 47.619 0.00 0.00 37.30 3.32
2645 2904 5.628130 AGAAACTAAAGTTGGGGTTAGGAC 58.372 41.667 0.00 0.00 38.44 3.85
2646 2905 5.370289 TGAGAAACTAAAGTTGGGGTTAGGA 59.630 40.000 0.00 0.00 38.44 2.94
2647 2906 5.627135 TGAGAAACTAAAGTTGGGGTTAGG 58.373 41.667 0.00 0.00 38.44 2.69
2648 2907 7.067737 TGTTTGAGAAACTAAAGTTGGGGTTAG 59.932 37.037 0.00 0.00 41.90 2.34
2649 2908 6.890814 TGTTTGAGAAACTAAAGTTGGGGTTA 59.109 34.615 0.00 0.00 41.90 2.85
2650 2909 5.717654 TGTTTGAGAAACTAAAGTTGGGGTT 59.282 36.000 0.00 0.00 41.90 4.11
2651 2910 5.265989 TGTTTGAGAAACTAAAGTTGGGGT 58.734 37.500 0.00 0.00 41.90 4.95
2655 2914 6.200854 GGGCAATGTTTGAGAAACTAAAGTTG 59.799 38.462 0.00 0.00 41.90 3.16
2658 2917 6.089249 AGGGCAATGTTTGAGAAACTAAAG 57.911 37.500 0.00 0.00 41.90 1.85
2692 2951 5.680151 GCATACTGGAGGAGTAAACAGAGTC 60.680 48.000 0.00 0.00 40.67 3.36
2693 2952 4.160626 GCATACTGGAGGAGTAAACAGAGT 59.839 45.833 0.00 0.00 40.67 3.24
2796 3055 7.148171 CCATTCTCCTTCCAACTTTCATAACTC 60.148 40.741 0.00 0.00 0.00 3.01
2955 3214 4.091549 ACCTATCAAGACCAAGAACGGTA 58.908 43.478 0.00 0.00 40.22 4.02
3014 3273 7.415989 GCCATAAGCAGATTGAAAGATGAAGAA 60.416 37.037 0.00 0.00 42.97 2.52
3016 3275 6.207213 GCCATAAGCAGATTGAAAGATGAAG 58.793 40.000 0.00 0.00 42.97 3.02
3048 3307 4.927267 AGGTATGACCATGAAGAACCAA 57.073 40.909 0.00 0.00 41.95 3.67
3049 3308 4.927267 AAGGTATGACCATGAAGAACCA 57.073 40.909 0.00 0.00 41.95 3.67
3169 3428 6.656902 ACAATCTGAGGCTCTCATTCAAATA 58.343 36.000 16.72 0.00 39.92 1.40
3170 3429 5.507637 ACAATCTGAGGCTCTCATTCAAAT 58.492 37.500 16.72 0.00 39.92 2.32
3171 3430 4.914983 ACAATCTGAGGCTCTCATTCAAA 58.085 39.130 16.72 0.00 39.92 2.69
3172 3431 4.564782 ACAATCTGAGGCTCTCATTCAA 57.435 40.909 16.72 0.00 39.92 2.69
3173 3432 5.129980 ACATACAATCTGAGGCTCTCATTCA 59.870 40.000 16.72 4.60 39.92 2.57
3174 3433 5.609423 ACATACAATCTGAGGCTCTCATTC 58.391 41.667 16.72 0.00 39.92 2.67
3175 3434 5.627182 ACATACAATCTGAGGCTCTCATT 57.373 39.130 16.72 10.49 39.92 2.57
3176 3435 5.366460 CAACATACAATCTGAGGCTCTCAT 58.634 41.667 16.72 4.51 39.92 2.90
3177 3436 4.763073 CAACATACAATCTGAGGCTCTCA 58.237 43.478 16.72 1.99 38.25 3.27
3178 3437 3.559242 GCAACATACAATCTGAGGCTCTC 59.441 47.826 16.72 0.00 0.00 3.20
3179 3438 3.054875 TGCAACATACAATCTGAGGCTCT 60.055 43.478 16.72 0.00 0.00 4.09
3180 3439 3.273434 TGCAACATACAATCTGAGGCTC 58.727 45.455 7.79 7.79 0.00 4.70
3181 3440 3.354948 TGCAACATACAATCTGAGGCT 57.645 42.857 0.00 0.00 0.00 4.58
3182 3441 4.439305 TTTGCAACATACAATCTGAGGC 57.561 40.909 0.00 0.00 0.00 4.70
3183 3442 5.125900 TGGATTTGCAACATACAATCTGAGG 59.874 40.000 0.00 0.00 0.00 3.86
3184 3443 6.198650 TGGATTTGCAACATACAATCTGAG 57.801 37.500 0.00 0.00 0.00 3.35
3185 3444 6.587206 TTGGATTTGCAACATACAATCTGA 57.413 33.333 12.46 0.00 0.00 3.27
3186 3445 7.599621 TCTTTTGGATTTGCAACATACAATCTG 59.400 33.333 15.49 10.81 0.00 2.90
3187 3446 7.669427 TCTTTTGGATTTGCAACATACAATCT 58.331 30.769 15.49 0.00 0.00 2.40
3278 3552 1.261619 GCCAGAACATATAGCACACGC 59.738 52.381 0.00 0.00 38.99 5.34
3392 4437 5.824904 AGCATTACTGAAGCAAAGTATGG 57.175 39.130 0.00 0.00 30.46 2.74
3414 4529 8.706492 ATGTAGTCCGTGAATCGTAAAAATTA 57.294 30.769 0.00 0.00 37.94 1.40
3426 4541 5.657745 TCCATTAAGGTATGTAGTCCGTGAA 59.342 40.000 0.00 0.00 39.02 3.18
3435 4550 6.645884 ACCAAAGGTCCATTAAGGTATGTA 57.354 37.500 0.00 0.00 39.02 2.29
3536 4651 5.902613 ATATTTTACACAGCACAGCACAT 57.097 34.783 0.00 0.00 0.00 3.21
3633 4748 4.637534 ACAAGTTTGGTGCTATAGATGCTG 59.362 41.667 3.21 0.00 0.00 4.41
3644 4759 7.713764 AATCAATAAAGAACAAGTTTGGTGC 57.286 32.000 0.00 0.00 0.00 5.01
3857 4972 6.415206 TCAACCCCGACTTAATATAGAAGG 57.585 41.667 3.15 0.00 0.00 3.46
3900 5015 7.901029 AGGATCTTGATATTTAATCAGCGAGA 58.099 34.615 0.00 0.00 0.00 4.04
3901 5016 8.545229 AAGGATCTTGATATTTAATCAGCGAG 57.455 34.615 0.00 0.00 0.00 5.03
3964 5091 0.178935 CCCATGGAAACCCCTTGTGT 60.179 55.000 15.22 0.00 38.15 3.72
3965 5092 0.114168 TCCCATGGAAACCCCTTGTG 59.886 55.000 15.22 0.00 38.15 3.33
4096 5224 1.419762 TGCTTCACCCAGAGTAGCAAA 59.580 47.619 0.00 0.00 37.21 3.68
4144 5276 5.738909 AGAGATACAAGGAAATGTGACTGG 58.261 41.667 0.00 0.00 34.75 4.00
4313 5595 9.360093 CTGATTTTTCCAGACTACTAACTAGTG 57.640 37.037 0.00 0.00 35.66 2.74
4326 5608 5.047566 TGTGTCCTTCTGATTTTTCCAGA 57.952 39.130 0.00 0.00 38.74 3.86
4338 5620 0.687354 AGCAACGGATGTGTCCTTCT 59.313 50.000 0.00 0.00 42.73 2.85
4350 5632 0.173708 GTGGAGGTCTAGAGCAACGG 59.826 60.000 23.18 0.00 0.00 4.44
4373 5655 8.141268 ACACTAACAACAATCCTAACATTTTGG 58.859 33.333 0.00 0.00 0.00 3.28
4548 5830 3.251972 GTCTGTGAAGAAAGCAAGGAAGG 59.748 47.826 0.00 0.00 0.00 3.46
4556 5838 2.880890 ACATGGTGTCTGTGAAGAAAGC 59.119 45.455 0.00 0.00 0.00 3.51
4557 5839 5.297776 AGAAACATGGTGTCTGTGAAGAAAG 59.702 40.000 0.00 0.00 27.65 2.62
4600 5882 8.254178 TGTTAATGGTATTGGTAACTACAACG 57.746 34.615 0.00 0.00 37.61 4.10
4678 6101 3.641436 TCTCCAGCTTTATCGCCTCATAA 59.359 43.478 0.00 0.00 0.00 1.90
4681 6104 1.410517 CTCTCCAGCTTTATCGCCTCA 59.589 52.381 0.00 0.00 0.00 3.86
4687 6110 7.864882 GCATTATTTTTCCTCTCCAGCTTTATC 59.135 37.037 0.00 0.00 0.00 1.75
4693 6116 4.989279 TGCATTATTTTTCCTCTCCAGC 57.011 40.909 0.00 0.00 0.00 4.85
4741 6164 2.328099 GGCGCAAGTCTTCACTGGG 61.328 63.158 10.83 0.00 40.30 4.45
4762 6185 0.763652 TACACCGGGGCTGTAACAAA 59.236 50.000 1.73 0.00 0.00 2.83
4780 6203 1.308047 CATGGCCTGCTAATTGCGTA 58.692 50.000 3.32 0.00 46.63 4.42
4781 6204 2.109431 CATGGCCTGCTAATTGCGT 58.891 52.632 3.32 0.00 46.63 5.24
4909 6332 8.404000 TCTTTGTCGACAATATCCTACTTCTAC 58.596 37.037 30.10 0.00 35.55 2.59
4910 6333 8.515695 TCTTTGTCGACAATATCCTACTTCTA 57.484 34.615 30.10 10.63 35.55 2.10
4911 6334 7.406031 TCTTTGTCGACAATATCCTACTTCT 57.594 36.000 30.10 0.00 35.55 2.85
5109 6536 7.122948 AGGGAGTACAATTTTACAACAAACACA 59.877 33.333 4.66 0.00 0.00 3.72
5136 6588 9.173021 TCCAAAACATCTCATATTTATGAACGT 57.827 29.630 2.18 0.00 41.72 3.99
5175 6629 8.534333 TCACTCATTTCAGTTTGTATGTAGTC 57.466 34.615 0.00 0.00 0.00 2.59
5178 6632 8.669946 TGTTCACTCATTTCAGTTTGTATGTA 57.330 30.769 0.00 0.00 0.00 2.29
5184 6638 6.585702 TGTGTTTGTTCACTCATTTCAGTTTG 59.414 34.615 0.00 0.00 38.90 2.93
5214 6668 8.328055 TCTGAATCAGATGTATATGGGCATAT 57.672 34.615 9.18 0.00 35.39 1.78
5215 6669 7.738437 TCTGAATCAGATGTATATGGGCATA 57.262 36.000 9.18 0.00 35.39 3.14
5216 6670 6.631763 TCTGAATCAGATGTATATGGGCAT 57.368 37.500 9.18 0.00 35.39 4.40
5217 6671 6.438186 TTCTGAATCAGATGTATATGGGCA 57.562 37.500 14.31 0.00 40.39 5.36
5218 6672 9.453572 TTTATTCTGAATCAGATGTATATGGGC 57.546 33.333 14.31 0.00 40.39 5.36
5261 6716 5.733620 ACTCCTTCCGTTCACAAATACTA 57.266 39.130 0.00 0.00 0.00 1.82
5275 7026 7.793036 ACAAAACCTCAGTATATACTCCTTCC 58.207 38.462 12.62 0.00 33.46 3.46
5294 7045 8.674607 CATATACAAACTCCCCTTCTACAAAAC 58.325 37.037 0.00 0.00 0.00 2.43
5295 7046 7.338449 GCATATACAAACTCCCCTTCTACAAAA 59.662 37.037 0.00 0.00 0.00 2.44
5296 7047 6.826741 GCATATACAAACTCCCCTTCTACAAA 59.173 38.462 0.00 0.00 0.00 2.83
5297 7048 6.069905 TGCATATACAAACTCCCCTTCTACAA 60.070 38.462 0.00 0.00 0.00 2.41
5299 7050 5.925509 TGCATATACAAACTCCCCTTCTAC 58.074 41.667 0.00 0.00 0.00 2.59
5301 7052 5.044846 AGTTGCATATACAAACTCCCCTTCT 60.045 40.000 0.00 0.00 0.00 2.85
5302 7053 5.066505 CAGTTGCATATACAAACTCCCCTTC 59.933 44.000 0.00 0.00 0.00 3.46
5307 7058 6.546395 CAACTCAGTTGCATATACAAACTCC 58.454 40.000 4.15 0.00 36.73 3.85
5346 7100 8.453320 TGCATTACAAGTTCTCTAAATGATGTG 58.547 33.333 0.00 0.00 0.00 3.21
5380 7162 1.703438 GCATCAGCTGAACCTCGCAG 61.703 60.000 22.50 4.66 37.91 5.18
5381 7163 1.742880 GCATCAGCTGAACCTCGCA 60.743 57.895 22.50 0.00 37.91 5.10
5382 7164 1.742880 TGCATCAGCTGAACCTCGC 60.743 57.895 22.50 17.64 42.74 5.03
5383 7165 0.390866 AGTGCATCAGCTGAACCTCG 60.391 55.000 22.50 8.20 42.74 4.63
5384 7166 2.680312 TAGTGCATCAGCTGAACCTC 57.320 50.000 22.50 14.57 42.74 3.85
5385 7167 3.276857 CAATAGTGCATCAGCTGAACCT 58.723 45.455 22.50 15.44 42.74 3.50
5386 7168 2.357009 CCAATAGTGCATCAGCTGAACC 59.643 50.000 22.50 14.82 42.74 3.62
5387 7169 3.012518 ACCAATAGTGCATCAGCTGAAC 58.987 45.455 22.50 14.77 42.74 3.18
5388 7170 3.354948 ACCAATAGTGCATCAGCTGAA 57.645 42.857 22.50 2.71 42.74 3.02
5389 7171 3.273434 GAACCAATAGTGCATCAGCTGA 58.727 45.455 20.79 20.79 42.74 4.26
5390 7172 3.011818 TGAACCAATAGTGCATCAGCTG 58.988 45.455 7.63 7.63 42.74 4.24
5391 7173 3.276857 CTGAACCAATAGTGCATCAGCT 58.723 45.455 9.50 0.00 42.74 4.24
5392 7174 3.012518 ACTGAACCAATAGTGCATCAGC 58.987 45.455 17.82 0.00 38.51 4.26
5393 7175 4.511527 AGACTGAACCAATAGTGCATCAG 58.488 43.478 16.85 16.85 39.75 2.90
5394 7176 4.558226 AGACTGAACCAATAGTGCATCA 57.442 40.909 0.00 0.00 31.77 3.07
5395 7177 4.937620 TCAAGACTGAACCAATAGTGCATC 59.062 41.667 0.00 0.00 31.77 3.91
5396 7178 4.910195 TCAAGACTGAACCAATAGTGCAT 58.090 39.130 0.00 0.00 31.77 3.96
5397 7179 4.350368 TCAAGACTGAACCAATAGTGCA 57.650 40.909 0.00 0.00 31.13 4.57
5398 7180 4.154918 CCTTCAAGACTGAACCAATAGTGC 59.845 45.833 0.00 0.00 36.62 4.40
5399 7181 4.154918 GCCTTCAAGACTGAACCAATAGTG 59.845 45.833 0.00 0.00 36.62 2.74
5416 7198 3.329542 GATCAGTGGGCCGCCTTCA 62.330 63.158 14.73 0.00 0.00 3.02
5512 7316 1.610102 GCTGATCTGTTCTGTGTGCCT 60.610 52.381 1.27 0.00 0.00 4.75


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.