Multiple sequence alignment - TraesCS4B01G058400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G058400 chr4B 100.000 7900 0 0 1 7900 49471734 49463835 0.000000e+00 14589.0
1 TraesCS4B01G058400 chr4B 95.918 49 2 0 2860 2908 277407943 277407991 6.570000e-11 80.5
2 TraesCS4B01G058400 chr4A 93.197 4013 123 45 2194 6123 567697188 567701133 0.000000e+00 5760.0
3 TraesCS4B01G058400 chr4A 92.333 1526 92 12 241 1762 567695469 567696973 0.000000e+00 2146.0
4 TraesCS4B01G058400 chr4A 95.652 805 25 5 6125 6923 567701163 567701963 0.000000e+00 1284.0
5 TraesCS4B01G058400 chr4A 90.774 672 40 9 7190 7854 567702625 567703281 0.000000e+00 878.0
6 TraesCS4B01G058400 chr4A 91.481 270 13 7 6915 7181 567702384 567702646 5.830000e-96 363.0
7 TraesCS4B01G058400 chr4A 95.833 192 7 1 2003 2193 136618024 136617833 7.700000e-80 309.0
8 TraesCS4B01G058400 chr4A 94.872 195 10 0 1789 1983 567696968 567697162 9.960000e-79 305.0
9 TraesCS4B01G058400 chr4A 90.000 60 4 1 2852 2909 712603205 712603264 8.500000e-10 76.8
10 TraesCS4B01G058400 chr4D 92.013 2717 100 31 2271 4893 34601692 34598999 0.000000e+00 3707.0
11 TraesCS4B01G058400 chr4D 92.676 1379 61 18 637 1983 34603495 34602125 0.000000e+00 1951.0
12 TraesCS4B01G058400 chr4D 86.520 638 75 7 1 635 34604194 34603565 0.000000e+00 691.0
13 TraesCS4B01G058400 chr4D 95.455 176 8 0 4939 5114 34598997 34598822 1.680000e-71 281.0
14 TraesCS4B01G058400 chr4D 73.446 531 131 9 13 537 319277885 319278411 2.910000e-44 191.0
15 TraesCS4B01G058400 chr4D 98.889 90 1 0 2194 2283 34602098 34602009 2.280000e-35 161.0
16 TraesCS4B01G058400 chr4D 93.684 95 6 0 1141 1235 505955805 505955711 8.260000e-30 143.0
17 TraesCS4B01G058400 chr5B 84.299 535 63 12 1087 1608 24136948 24136422 3.290000e-138 503.0
18 TraesCS4B01G058400 chr5B 95.361 194 8 1 2001 2193 120825212 120825405 2.770000e-79 307.0
19 TraesCS4B01G058400 chr5B 87.500 80 3 6 4875 4947 331215423 331215344 1.410000e-12 86.1
20 TraesCS4B01G058400 chr5B 87.179 78 7 3 4874 4950 430469462 430469387 1.410000e-12 86.1
21 TraesCS4B01G058400 chr5B 90.909 44 4 0 175 218 515701949 515701992 8.560000e-05 60.2
22 TraesCS4B01G058400 chr6B 83.022 536 64 13 1087 1608 641490770 641491292 2.010000e-125 460.0
23 TraesCS4B01G058400 chr6B 97.143 70 0 1 4883 4950 135867582 135867651 5.010000e-22 117.0
24 TraesCS4B01G058400 chr6B 92.424 66 2 3 4884 4947 166127583 166127647 3.040000e-14 91.6
25 TraesCS4B01G058400 chr6B 90.769 65 5 1 4884 4947 195461861 195461925 1.410000e-12 86.1
26 TraesCS4B01G058400 chr6B 86.486 74 6 4 4884 4955 49622815 49622744 2.360000e-10 78.7
27 TraesCS4B01G058400 chr6B 89.831 59 4 1 2853 2909 281611933 281611875 3.060000e-09 75.0
28 TraesCS4B01G058400 chr1A 76.780 590 129 8 12 597 298723865 298723280 2.750000e-84 324.0
29 TraesCS4B01G058400 chr5D 96.875 192 5 1 2003 2193 420901067 420900876 3.560000e-83 320.0
30 TraesCS4B01G058400 chr6D 96.859 191 5 1 2004 2193 418875183 418875373 1.280000e-82 318.0
31 TraesCS4B01G058400 chr6D 72.763 514 132 7 12 519 343639961 343639450 4.900000e-37 167.0
32 TraesCS4B01G058400 chr6D 75.601 291 65 5 24 311 89726417 89726704 1.070000e-28 139.0
33 TraesCS4B01G058400 chr6D 94.000 50 3 0 2860 2909 159490533 159490484 8.500000e-10 76.8
34 TraesCS4B01G058400 chr7D 95.897 195 6 2 2004 2197 565658867 565658674 1.650000e-81 315.0
35 TraesCS4B01G058400 chr7D 73.826 596 138 17 12 597 568062444 568061857 3.710000e-53 220.0
36 TraesCS4B01G058400 chr7D 75.182 274 52 14 14 277 22380387 22380654 1.800000e-21 115.0
37 TraesCS4B01G058400 chr3D 95.897 195 7 1 2000 2193 337532244 337532050 1.650000e-81 315.0
38 TraesCS4B01G058400 chr3D 90.000 70 5 2 4880 4948 125495615 125495547 1.090000e-13 89.8
39 TraesCS4B01G058400 chr3D 90.769 65 5 1 4884 4947 474998257 474998193 1.410000e-12 86.1
40 TraesCS4B01G058400 chr3D 87.302 63 7 1 2860 2922 22679097 22679158 3.960000e-08 71.3
41 TraesCS4B01G058400 chr3D 87.302 63 7 1 2860 2922 22767861 22767800 3.960000e-08 71.3
42 TraesCS4B01G058400 chr3B 93.396 212 11 3 1984 2193 532914729 532914939 2.140000e-80 311.0
43 TraesCS4B01G058400 chr3B 79.825 228 39 7 12 234 774942953 774943178 8.210000e-35 159.0
44 TraesCS4B01G058400 chr6A 95.812 191 7 1 2004 2193 4914226 4914416 2.770000e-79 307.0
45 TraesCS4B01G058400 chr7A 91.589 214 16 2 1987 2199 686003761 686003973 2.160000e-75 294.0
46 TraesCS4B01G058400 chr2A 76.431 297 60 9 12 302 515201907 515201615 1.370000e-32 152.0
47 TraesCS4B01G058400 chr2D 86.957 69 8 1 2860 2927 589522300 589522232 8.500000e-10 76.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G058400 chr4B 49463835 49471734 7899 True 14589.000000 14589 100.0000 1 7900 1 chr4B.!!$R1 7899
1 TraesCS4B01G058400 chr4A 567695469 567703281 7812 False 1789.333333 5760 93.0515 241 7854 6 chr4A.!!$F2 7613
2 TraesCS4B01G058400 chr4D 34598822 34604194 5372 True 1358.200000 3707 93.1106 1 5114 5 chr4D.!!$R2 5113
3 TraesCS4B01G058400 chr5B 24136422 24136948 526 True 503.000000 503 84.2990 1087 1608 1 chr5B.!!$R1 521
4 TraesCS4B01G058400 chr6B 641490770 641491292 522 False 460.000000 460 83.0220 1087 1608 1 chr6B.!!$F4 521
5 TraesCS4B01G058400 chr1A 298723280 298723865 585 True 324.000000 324 76.7800 12 597 1 chr1A.!!$R1 585
6 TraesCS4B01G058400 chr7D 568061857 568062444 587 True 220.000000 220 73.8260 12 597 1 chr7D.!!$R2 585

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
277 278 0.773644 AAACATGTGCCTCCACTCCT 59.226 50.000 0.00 0.00 42.54 3.69 F
718 798 1.140312 AGGAACTGGAAAGCAGGTGA 58.860 50.000 0.00 0.00 37.18 4.02 F
719 799 1.707427 AGGAACTGGAAAGCAGGTGAT 59.293 47.619 0.00 0.00 37.18 3.06 F
2018 2162 0.175760 TGACCAGTGGCGAATCTAGC 59.824 55.000 9.78 0.00 0.00 3.42 F
2185 2329 0.106967 GAAGCCTCCCTGGTGGAATC 60.107 60.000 8.46 1.98 44.57 2.52 F
2300 2772 1.740025 AGGATACAAAGCGCTTCTTGC 59.260 47.619 25.24 13.31 41.41 4.01 F
3673 4208 2.369860 ACAGTGATCTGCCTGTGAGAAA 59.630 45.455 10.98 0.00 44.77 2.52 F
5474 6081 0.307453 TGTGCGACAGATTGTTGTGC 59.693 50.000 0.00 0.00 34.26 4.57 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2000 2144 0.175760 TGCTAGATTCGCCACTGGTC 59.824 55.000 0.00 0.0 0.00 4.02 R
2005 2149 0.175760 TGTCCTGCTAGATTCGCCAC 59.824 55.000 0.00 0.0 0.00 5.01 R
2179 2323 0.320683 CACACTCAGTGGCGATTCCA 60.321 55.000 10.28 0.0 44.69 3.53 R
2991 3521 0.545548 GTTGGACCCCAGAGAGGAGT 60.546 60.000 0.00 0.0 41.22 3.85 R
3112 3642 2.036387 AGGCAACCTACCAACCAAAAC 58.964 47.619 0.00 0.0 28.47 2.43 R
4072 4659 2.198827 TGCCATGTCAGTTCGGAAAT 57.801 45.000 0.00 0.0 0.00 2.17 R
5577 6185 0.031716 AGCCTAGGCCATGACAGAGA 60.032 55.000 30.42 0.0 43.17 3.10 R
7270 8366 0.396435 ATTGTGGACTCGCACAGGAA 59.604 50.000 0.00 0.0 32.51 3.36 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
76 77 4.713553 TCAAATACTCTGCTCCAAACACA 58.286 39.130 0.00 0.00 0.00 3.72
85 86 1.031235 CTCCAAACACATGCACCACA 58.969 50.000 0.00 0.00 0.00 4.17
114 115 3.755378 GCAAATCTCACAGTGGTCTTCAT 59.245 43.478 0.00 0.00 0.00 2.57
119 120 3.515104 TCTCACAGTGGTCTTCATGCATA 59.485 43.478 0.00 0.00 0.00 3.14
142 143 2.043772 TCCCCCATCCGGACCATT 59.956 61.111 6.12 0.00 0.00 3.16
143 144 2.195683 CCCCCATCCGGACCATTG 59.804 66.667 6.12 0.00 0.00 2.82
156 157 2.164219 GGACCATTGCATGAACGACATT 59.836 45.455 0.00 0.00 37.07 2.71
170 171 1.299541 GACATTGATGGCGGTACCTG 58.700 55.000 10.90 4.84 40.22 4.00
192 193 4.820173 TGATTCAAGCATCCTCATAGCAAG 59.180 41.667 0.00 0.00 0.00 4.01
194 195 2.092807 TCAAGCATCCTCATAGCAAGCA 60.093 45.455 0.00 0.00 0.00 3.91
260 261 2.289444 CCGGTGAGCTTGAAGTAGGAAA 60.289 50.000 0.00 0.00 0.00 3.13
277 278 0.773644 AAACATGTGCCTCCACTCCT 59.226 50.000 0.00 0.00 42.54 3.69
304 309 5.164424 ACCACGTGTAAGACAATGGTTTGT 61.164 41.667 15.65 0.00 43.47 2.83
350 359 2.845659 TGTATCAGGGGATGTTGGTCT 58.154 47.619 0.00 0.00 34.89 3.85
359 368 1.203001 GGATGTTGGTCTGGGTGGAAA 60.203 52.381 0.00 0.00 0.00 3.13
384 393 6.613153 AGTCCTTAAAGAGTAGTCATGCTT 57.387 37.500 0.00 0.00 0.00 3.91
402 411 4.530857 CAGCGACCCCATCCCGAC 62.531 72.222 0.00 0.00 0.00 4.79
418 427 3.578716 TCCCGACTCAAAACTCTTCTCAT 59.421 43.478 0.00 0.00 0.00 2.90
429 438 9.219603 TCAAAACTCTTCTCATTTTGATCGTAT 57.780 29.630 7.16 0.00 43.74 3.06
437 446 8.560355 TTCTCATTTTGATCGTATCCTTGAAA 57.440 30.769 0.00 0.00 0.00 2.69
451 460 6.600882 ATCCTTGAAATTCAGAATGTGCTT 57.399 33.333 0.00 0.00 37.40 3.91
469 478 2.819348 GCTTCACCTCCCTGTCCATTTT 60.819 50.000 0.00 0.00 0.00 1.82
485 494 3.958798 CCATTTTCTCCTGGATGCTCATT 59.041 43.478 0.00 0.00 34.24 2.57
525 534 2.074576 TCTTCGTTCGACTCAGACGAT 58.925 47.619 9.83 0.00 39.45 3.73
544 553 4.201685 ACGATTCGAATAACTCCTTTTGCG 60.202 41.667 11.38 8.15 0.00 4.85
547 556 4.398549 TCGAATAACTCCTTTTGCGTTG 57.601 40.909 0.00 0.00 0.00 4.10
635 647 7.038048 TGCACAATTGAAGTTTCACAACATAA 58.962 30.769 13.59 0.00 36.83 1.90
664 744 9.431887 AGCAGTCGTTTAATTATAGAAACTGAA 57.568 29.630 14.61 0.00 34.89 3.02
704 784 4.492611 ACGGAGATTTAAGACGAAGGAAC 58.507 43.478 0.00 0.00 0.00 3.62
706 786 4.563184 CGGAGATTTAAGACGAAGGAACTG 59.437 45.833 0.00 0.00 40.86 3.16
707 787 4.870991 GGAGATTTAAGACGAAGGAACTGG 59.129 45.833 0.00 0.00 40.86 4.00
708 788 5.337330 GGAGATTTAAGACGAAGGAACTGGA 60.337 44.000 0.00 0.00 40.86 3.86
709 789 6.110411 AGATTTAAGACGAAGGAACTGGAA 57.890 37.500 0.00 0.00 40.86 3.53
710 790 6.531021 AGATTTAAGACGAAGGAACTGGAAA 58.469 36.000 0.00 0.00 40.86 3.13
712 792 2.171341 AGACGAAGGAACTGGAAAGC 57.829 50.000 0.00 0.00 40.86 3.51
713 793 1.416401 AGACGAAGGAACTGGAAAGCA 59.584 47.619 0.00 0.00 40.86 3.91
714 794 1.801178 GACGAAGGAACTGGAAAGCAG 59.199 52.381 0.00 0.00 40.86 4.24
715 795 1.160137 CGAAGGAACTGGAAAGCAGG 58.840 55.000 0.00 0.00 40.86 4.85
718 798 1.140312 AGGAACTGGAAAGCAGGTGA 58.860 50.000 0.00 0.00 37.18 4.02
719 799 1.707427 AGGAACTGGAAAGCAGGTGAT 59.293 47.619 0.00 0.00 37.18 3.06
720 800 1.815003 GGAACTGGAAAGCAGGTGATG 59.185 52.381 0.00 0.00 0.00 3.07
721 801 2.553028 GGAACTGGAAAGCAGGTGATGA 60.553 50.000 0.00 0.00 0.00 2.92
722 802 2.957402 ACTGGAAAGCAGGTGATGAA 57.043 45.000 0.00 0.00 0.00 2.57
724 804 2.107204 ACTGGAAAGCAGGTGATGAAGT 59.893 45.455 0.00 0.00 0.00 3.01
726 806 3.674997 TGGAAAGCAGGTGATGAAGTAC 58.325 45.455 0.00 0.00 0.00 2.73
727 807 3.327757 TGGAAAGCAGGTGATGAAGTACT 59.672 43.478 0.00 0.00 0.00 2.73
728 808 3.686726 GGAAAGCAGGTGATGAAGTACTG 59.313 47.826 0.00 0.00 0.00 2.74
729 809 4.319177 GAAAGCAGGTGATGAAGTACTGT 58.681 43.478 0.00 0.00 0.00 3.55
730 810 5.479306 GAAAGCAGGTGATGAAGTACTGTA 58.521 41.667 0.00 0.00 0.00 2.74
733 830 4.467795 AGCAGGTGATGAAGTACTGTACAT 59.532 41.667 19.27 8.08 0.00 2.29
744 841 2.060326 ACTGTACATCACAACGACGG 57.940 50.000 0.00 0.00 36.48 4.79
749 846 3.441222 TGTACATCACAACGACGGTCTAT 59.559 43.478 6.57 0.00 32.95 1.98
912 1023 3.040099 CCAAACCGAACTTGCTAAAACG 58.960 45.455 0.00 0.00 0.00 3.60
1449 1570 2.087646 GTTTTTGCTTTGGGGTTGCAA 58.912 42.857 0.00 0.00 43.69 4.08
1486 1616 1.737793 GAATCGCGTTCCAGTTCCATT 59.262 47.619 5.77 0.00 0.00 3.16
1500 1630 5.359860 CCAGTTCCATTTTTATGGGGACTAC 59.640 44.000 4.46 0.00 41.95 2.73
1526 1656 4.141321 TGGCCAGATTCTTAAGATCTGCAT 60.141 41.667 24.70 11.12 40.18 3.96
1670 1800 2.029623 CTGTGGTAGTATACGCAGGGT 58.970 52.381 9.35 0.00 44.28 4.34
1689 1819 1.751544 GCTGGTCATGGCTCATGCA 60.752 57.895 0.00 0.00 41.18 3.96
1717 1847 2.418746 GCTTTCGCCTAGTCATTCCAGA 60.419 50.000 0.00 0.00 0.00 3.86
1767 1897 3.512329 TCAATGGCTCGTAGTTTAGTCCA 59.488 43.478 0.00 0.00 0.00 4.02
1783 1913 8.312564 AGTTTAGTCCAAGTTACCTGAGATTAC 58.687 37.037 0.00 0.00 0.00 1.89
1785 1915 4.159879 AGTCCAAGTTACCTGAGATTACGG 59.840 45.833 0.00 0.00 0.00 4.02
1793 1923 9.760077 AAGTTACCTGAGATTACGGTATATTTG 57.240 33.333 0.00 0.00 33.62 2.32
1802 1932 7.918076 AGATTACGGTATATTTGGTGATGGAT 58.082 34.615 0.00 0.00 0.00 3.41
1859 1989 2.000447 GGTATGAAGTGGAAGTCGTGC 59.000 52.381 0.00 0.00 0.00 5.34
1896 2026 8.958119 TGGCACCAAGAATTTAGTTACTATAG 57.042 34.615 0.00 0.00 0.00 1.31
1923 2053 4.284829 TCACTGTGATGCAATGGTTCTA 57.715 40.909 6.36 0.00 0.00 2.10
2000 2144 6.612247 TGGTGTTAAAGTTACATCAGTGTG 57.388 37.500 0.00 0.00 39.39 3.82
2001 2145 6.350103 TGGTGTTAAAGTTACATCAGTGTGA 58.650 36.000 0.00 0.00 39.39 3.58
2002 2146 6.259167 TGGTGTTAAAGTTACATCAGTGTGAC 59.741 38.462 0.00 0.00 43.15 3.67
2003 2147 6.293244 GGTGTTAAAGTTACATCAGTGTGACC 60.293 42.308 0.61 0.00 43.68 4.02
2004 2148 6.259167 GTGTTAAAGTTACATCAGTGTGACCA 59.741 38.462 0.61 0.00 43.68 4.02
2005 2149 6.481976 TGTTAAAGTTACATCAGTGTGACCAG 59.518 38.462 0.61 0.00 43.68 4.00
2006 2150 4.689612 AAGTTACATCAGTGTGACCAGT 57.310 40.909 0.61 0.00 43.68 4.00
2007 2151 3.995199 AGTTACATCAGTGTGACCAGTG 58.005 45.455 0.61 0.00 43.68 3.66
2008 2152 3.067106 GTTACATCAGTGTGACCAGTGG 58.933 50.000 7.91 7.91 41.52 4.00
2009 2153 0.250467 ACATCAGTGTGACCAGTGGC 60.250 55.000 9.78 2.56 41.52 5.01
2010 2154 1.004560 ATCAGTGTGACCAGTGGCG 60.005 57.895 9.78 0.00 41.52 5.69
2011 2155 1.471829 ATCAGTGTGACCAGTGGCGA 61.472 55.000 9.78 0.00 41.52 5.54
2012 2156 1.227527 CAGTGTGACCAGTGGCGAA 60.228 57.895 9.78 0.00 38.20 4.70
2013 2157 0.603707 CAGTGTGACCAGTGGCGAAT 60.604 55.000 9.78 0.00 38.20 3.34
2014 2158 0.320771 AGTGTGACCAGTGGCGAATC 60.321 55.000 9.78 0.00 0.00 2.52
2015 2159 0.320771 GTGTGACCAGTGGCGAATCT 60.321 55.000 9.78 0.00 0.00 2.40
2016 2160 1.067142 GTGTGACCAGTGGCGAATCTA 60.067 52.381 9.78 0.00 0.00 1.98
2017 2161 1.204704 TGTGACCAGTGGCGAATCTAG 59.795 52.381 9.78 0.00 0.00 2.43
2018 2162 0.175760 TGACCAGTGGCGAATCTAGC 59.824 55.000 9.78 0.00 0.00 3.42
2019 2163 0.175760 GACCAGTGGCGAATCTAGCA 59.824 55.000 9.78 0.00 36.08 3.49
2020 2164 0.176680 ACCAGTGGCGAATCTAGCAG 59.823 55.000 9.78 0.00 36.08 4.24
2021 2165 0.531532 CCAGTGGCGAATCTAGCAGG 60.532 60.000 0.00 0.00 36.08 4.85
2022 2166 0.461548 CAGTGGCGAATCTAGCAGGA 59.538 55.000 0.00 0.00 36.08 3.86
2023 2167 0.461961 AGTGGCGAATCTAGCAGGAC 59.538 55.000 0.00 0.00 36.08 3.85
2024 2168 0.175760 GTGGCGAATCTAGCAGGACA 59.824 55.000 0.00 0.00 36.08 4.02
2025 2169 1.123077 TGGCGAATCTAGCAGGACAT 58.877 50.000 0.00 0.00 36.08 3.06
2026 2170 1.486310 TGGCGAATCTAGCAGGACATT 59.514 47.619 0.00 0.00 36.08 2.71
2027 2171 1.869767 GGCGAATCTAGCAGGACATTG 59.130 52.381 0.00 0.00 36.08 2.82
2028 2172 1.869767 GCGAATCTAGCAGGACATTGG 59.130 52.381 0.00 0.00 34.19 3.16
2029 2173 2.483714 GCGAATCTAGCAGGACATTGGA 60.484 50.000 0.00 0.00 34.19 3.53
2030 2174 3.805108 GCGAATCTAGCAGGACATTGGAT 60.805 47.826 0.00 0.00 34.19 3.41
2031 2175 3.744942 CGAATCTAGCAGGACATTGGATG 59.255 47.826 0.00 0.00 0.00 3.51
2032 2176 3.784511 ATCTAGCAGGACATTGGATGG 57.215 47.619 0.00 0.00 33.60 3.51
2033 2177 2.481441 TCTAGCAGGACATTGGATGGT 58.519 47.619 0.00 0.00 33.60 3.55
2034 2178 3.653164 TCTAGCAGGACATTGGATGGTA 58.347 45.455 0.00 0.00 33.60 3.25
2035 2179 3.643320 TCTAGCAGGACATTGGATGGTAG 59.357 47.826 13.59 13.59 42.36 3.18
2036 2180 1.492176 AGCAGGACATTGGATGGTAGG 59.508 52.381 0.00 0.00 33.60 3.18
2037 2181 1.972872 CAGGACATTGGATGGTAGGC 58.027 55.000 0.00 0.00 33.60 3.93
2038 2182 1.492176 CAGGACATTGGATGGTAGGCT 59.508 52.381 0.00 0.00 33.60 4.58
2039 2183 2.092212 CAGGACATTGGATGGTAGGCTT 60.092 50.000 0.00 0.00 33.60 4.35
2040 2184 3.136443 CAGGACATTGGATGGTAGGCTTA 59.864 47.826 0.00 0.00 33.60 3.09
2041 2185 3.785887 AGGACATTGGATGGTAGGCTTAA 59.214 43.478 0.00 0.00 33.60 1.85
2042 2186 4.229582 AGGACATTGGATGGTAGGCTTAAA 59.770 41.667 0.00 0.00 33.60 1.52
2043 2187 4.953579 GGACATTGGATGGTAGGCTTAAAA 59.046 41.667 0.00 0.00 33.60 1.52
2044 2188 5.163550 GGACATTGGATGGTAGGCTTAAAAC 60.164 44.000 0.00 0.00 33.60 2.43
2045 2189 5.329399 ACATTGGATGGTAGGCTTAAAACA 58.671 37.500 0.00 0.00 33.60 2.83
2046 2190 5.185056 ACATTGGATGGTAGGCTTAAAACAC 59.815 40.000 0.00 0.00 33.60 3.32
2047 2191 4.374689 TGGATGGTAGGCTTAAAACACA 57.625 40.909 0.00 0.00 0.00 3.72
2048 2192 4.730966 TGGATGGTAGGCTTAAAACACAA 58.269 39.130 0.00 0.00 0.00 3.33
2049 2193 5.141182 TGGATGGTAGGCTTAAAACACAAA 58.859 37.500 0.00 0.00 0.00 2.83
2050 2194 5.777732 TGGATGGTAGGCTTAAAACACAAAT 59.222 36.000 0.00 0.00 0.00 2.32
2051 2195 6.268847 TGGATGGTAGGCTTAAAACACAAATT 59.731 34.615 0.00 0.00 0.00 1.82
2052 2196 7.158697 GGATGGTAGGCTTAAAACACAAATTT 58.841 34.615 0.00 0.00 0.00 1.82
2053 2197 7.330946 GGATGGTAGGCTTAAAACACAAATTTC 59.669 37.037 0.00 0.00 0.00 2.17
2054 2198 6.517605 TGGTAGGCTTAAAACACAAATTTCC 58.482 36.000 0.00 0.00 0.00 3.13
2055 2199 6.325286 TGGTAGGCTTAAAACACAAATTTCCT 59.675 34.615 0.00 0.00 0.00 3.36
2056 2200 7.506261 TGGTAGGCTTAAAACACAAATTTCCTA 59.494 33.333 0.00 0.00 0.00 2.94
2057 2201 8.361889 GGTAGGCTTAAAACACAAATTTCCTAA 58.638 33.333 0.00 0.00 0.00 2.69
2058 2202 9.406828 GTAGGCTTAAAACACAAATTTCCTAAG 57.593 33.333 0.00 0.00 0.00 2.18
2059 2203 8.018537 AGGCTTAAAACACAAATTTCCTAAGT 57.981 30.769 0.00 0.00 0.00 2.24
2060 2204 8.141909 AGGCTTAAAACACAAATTTCCTAAGTC 58.858 33.333 0.00 0.00 0.00 3.01
2061 2205 8.141909 GGCTTAAAACACAAATTTCCTAAGTCT 58.858 33.333 0.00 0.00 0.00 3.24
2069 2213 9.802039 ACACAAATTTCCTAAGTCTAATTACCA 57.198 29.630 0.00 0.00 0.00 3.25
2075 2219 8.871629 TTTCCTAAGTCTAATTACCAAATGCA 57.128 30.769 0.00 0.00 0.00 3.96
2076 2220 9.474313 TTTCCTAAGTCTAATTACCAAATGCAT 57.526 29.630 0.00 0.00 0.00 3.96
2077 2221 9.474313 TTCCTAAGTCTAATTACCAAATGCATT 57.526 29.630 5.99 5.99 0.00 3.56
2078 2222 8.902806 TCCTAAGTCTAATTACCAAATGCATTG 58.097 33.333 13.82 3.77 38.84 2.82
2079 2223 7.649306 CCTAAGTCTAATTACCAAATGCATTGC 59.351 37.037 13.82 0.46 37.73 3.56
2080 2224 6.528537 AGTCTAATTACCAAATGCATTGCA 57.471 33.333 13.82 14.72 44.86 4.08
2081 2225 6.934056 AGTCTAATTACCAAATGCATTGCAA 58.066 32.000 16.46 0.00 43.62 4.08
2082 2226 7.558604 AGTCTAATTACCAAATGCATTGCAAT 58.441 30.769 16.46 5.99 43.62 3.56
2083 2227 8.042515 AGTCTAATTACCAAATGCATTGCAATT 58.957 29.630 16.46 11.02 43.62 2.32
2084 2228 8.117988 GTCTAATTACCAAATGCATTGCAATTG 58.882 33.333 25.68 25.68 45.59 2.32
2085 2229 6.821031 AATTACCAAATGCATTGCAATTGT 57.179 29.167 28.48 21.05 44.84 2.71
2086 2230 6.821031 ATTACCAAATGCATTGCAATTGTT 57.179 29.167 28.48 21.41 44.84 2.83
2087 2231 4.491234 ACCAAATGCATTGCAATTGTTG 57.509 36.364 28.48 21.57 44.84 3.33
2100 2244 4.650545 CAATTGTTGCATGTAAAGCACC 57.349 40.909 0.00 0.00 42.54 5.01
2101 2245 4.056740 CAATTGTTGCATGTAAAGCACCA 58.943 39.130 0.00 0.00 42.54 4.17
2102 2246 3.367992 TTGTTGCATGTAAAGCACCAG 57.632 42.857 0.00 0.00 42.54 4.00
2103 2247 2.580962 TGTTGCATGTAAAGCACCAGA 58.419 42.857 0.00 0.00 42.54 3.86
2104 2248 2.954989 TGTTGCATGTAAAGCACCAGAA 59.045 40.909 0.00 0.00 42.54 3.02
2105 2249 3.573538 TGTTGCATGTAAAGCACCAGAAT 59.426 39.130 0.00 0.00 42.54 2.40
2106 2250 4.764308 TGTTGCATGTAAAGCACCAGAATA 59.236 37.500 0.00 0.00 42.54 1.75
2107 2251 5.418524 TGTTGCATGTAAAGCACCAGAATAT 59.581 36.000 0.00 0.00 42.54 1.28
2108 2252 6.601217 TGTTGCATGTAAAGCACCAGAATATA 59.399 34.615 0.00 0.00 42.54 0.86
2109 2253 6.618287 TGCATGTAAAGCACCAGAATATAC 57.382 37.500 0.00 0.00 37.02 1.47
2110 2254 6.356556 TGCATGTAAAGCACCAGAATATACT 58.643 36.000 0.00 0.00 37.02 2.12
2111 2255 6.828273 TGCATGTAAAGCACCAGAATATACTT 59.172 34.615 0.00 0.00 37.02 2.24
2112 2256 7.134815 GCATGTAAAGCACCAGAATATACTTG 58.865 38.462 0.00 0.00 0.00 3.16
2113 2257 7.201732 GCATGTAAAGCACCAGAATATACTTGT 60.202 37.037 0.00 0.00 0.00 3.16
2114 2258 7.843490 TGTAAAGCACCAGAATATACTTGTC 57.157 36.000 0.00 0.00 0.00 3.18
2115 2259 7.390823 TGTAAAGCACCAGAATATACTTGTCA 58.609 34.615 0.00 0.00 0.00 3.58
2116 2260 7.880713 TGTAAAGCACCAGAATATACTTGTCAA 59.119 33.333 0.00 0.00 0.00 3.18
2117 2261 6.992063 AAGCACCAGAATATACTTGTCAAG 57.008 37.500 11.17 11.17 0.00 3.02
2118 2262 6.054860 AGCACCAGAATATACTTGTCAAGT 57.945 37.500 21.48 21.48 45.40 3.16
2119 2263 5.877012 AGCACCAGAATATACTTGTCAAGTG 59.123 40.000 25.41 10.44 42.84 3.16
2120 2264 5.065218 GCACCAGAATATACTTGTCAAGTGG 59.935 44.000 25.41 18.29 42.84 4.00
2121 2265 6.173339 CACCAGAATATACTTGTCAAGTGGT 58.827 40.000 25.41 18.86 42.84 4.16
2122 2266 7.327975 CACCAGAATATACTTGTCAAGTGGTA 58.672 38.462 25.41 18.09 42.84 3.25
2123 2267 7.987458 CACCAGAATATACTTGTCAAGTGGTAT 59.013 37.037 25.41 19.25 42.84 2.73
2124 2268 7.987458 ACCAGAATATACTTGTCAAGTGGTATG 59.013 37.037 25.41 15.86 42.84 2.39
2125 2269 7.987458 CCAGAATATACTTGTCAAGTGGTATGT 59.013 37.037 25.41 9.00 42.84 2.29
2126 2270 9.383519 CAGAATATACTTGTCAAGTGGTATGTT 57.616 33.333 25.41 15.89 42.84 2.71
2127 2271 9.959721 AGAATATACTTGTCAAGTGGTATGTTT 57.040 29.630 25.41 10.98 42.84 2.83
2130 2274 5.941948 ACTTGTCAAGTGGTATGTTTAGC 57.058 39.130 17.49 0.00 41.01 3.09
2131 2275 5.621193 ACTTGTCAAGTGGTATGTTTAGCT 58.379 37.500 17.49 0.00 41.01 3.32
2132 2276 6.062095 ACTTGTCAAGTGGTATGTTTAGCTT 58.938 36.000 17.49 0.00 41.01 3.74
2133 2277 7.221450 ACTTGTCAAGTGGTATGTTTAGCTTA 58.779 34.615 17.49 0.00 41.01 3.09
2134 2278 7.717875 ACTTGTCAAGTGGTATGTTTAGCTTAA 59.282 33.333 17.49 0.00 41.01 1.85
2135 2279 8.630054 TTGTCAAGTGGTATGTTTAGCTTAAT 57.370 30.769 0.00 0.00 0.00 1.40
2136 2280 9.727859 TTGTCAAGTGGTATGTTTAGCTTAATA 57.272 29.630 0.00 0.00 0.00 0.98
2137 2281 9.727859 TGTCAAGTGGTATGTTTAGCTTAATAA 57.272 29.630 0.00 0.00 0.00 1.40
2149 2293 8.966868 TGTTTAGCTTAATAAGATTTTGGAGGG 58.033 33.333 3.88 0.00 0.00 4.30
2150 2294 8.967918 GTTTAGCTTAATAAGATTTTGGAGGGT 58.032 33.333 3.88 0.00 0.00 4.34
2152 2296 9.847224 TTAGCTTAATAAGATTTTGGAGGGTAG 57.153 33.333 3.88 0.00 0.00 3.18
2153 2297 7.290813 AGCTTAATAAGATTTTGGAGGGTAGG 58.709 38.462 3.88 0.00 0.00 3.18
2154 2298 6.016192 GCTTAATAAGATTTTGGAGGGTAGGC 60.016 42.308 3.88 0.00 0.00 3.93
2155 2299 5.734031 AATAAGATTTTGGAGGGTAGGCT 57.266 39.130 0.00 0.00 0.00 4.58
2156 2300 5.734031 ATAAGATTTTGGAGGGTAGGCTT 57.266 39.130 0.00 0.00 0.00 4.35
2157 2301 6.841781 ATAAGATTTTGGAGGGTAGGCTTA 57.158 37.500 0.00 0.00 0.00 3.09
2158 2302 5.530176 AAGATTTTGGAGGGTAGGCTTAA 57.470 39.130 0.00 0.00 0.00 1.85
2159 2303 5.117406 AGATTTTGGAGGGTAGGCTTAAG 57.883 43.478 0.00 0.00 0.00 1.85
2160 2304 2.801077 TTTGGAGGGTAGGCTTAAGC 57.199 50.000 19.53 19.53 41.14 3.09
2174 2318 2.881513 GCTTAAGCCTATTGAAGCCTCC 59.118 50.000 17.00 0.00 38.68 4.30
2175 2319 3.481453 CTTAAGCCTATTGAAGCCTCCC 58.519 50.000 0.00 0.00 0.00 4.30
2176 2320 1.601248 AAGCCTATTGAAGCCTCCCT 58.399 50.000 0.00 0.00 0.00 4.20
2177 2321 0.842635 AGCCTATTGAAGCCTCCCTG 59.157 55.000 0.00 0.00 0.00 4.45
2178 2322 0.179006 GCCTATTGAAGCCTCCCTGG 60.179 60.000 0.00 0.00 39.35 4.45
2179 2323 1.216990 CCTATTGAAGCCTCCCTGGT 58.783 55.000 0.00 0.00 38.35 4.00
2180 2324 1.133976 CCTATTGAAGCCTCCCTGGTG 60.134 57.143 0.00 0.00 38.35 4.17
2181 2325 0.918983 TATTGAAGCCTCCCTGGTGG 59.081 55.000 0.00 0.00 38.35 4.61
2182 2326 0.846427 ATTGAAGCCTCCCTGGTGGA 60.846 55.000 8.46 0.00 42.41 4.02
2183 2327 1.065410 TTGAAGCCTCCCTGGTGGAA 61.065 55.000 8.46 0.00 44.57 3.53
2184 2328 0.846427 TGAAGCCTCCCTGGTGGAAT 60.846 55.000 8.46 0.00 44.57 3.01
2185 2329 0.106967 GAAGCCTCCCTGGTGGAATC 60.107 60.000 8.46 1.98 44.57 2.52
2186 2330 1.915078 AAGCCTCCCTGGTGGAATCG 61.915 60.000 8.46 0.00 44.57 3.34
2187 2331 2.190578 CCTCCCTGGTGGAATCGC 59.809 66.667 0.00 0.00 44.57 4.58
2188 2332 2.190578 CTCCCTGGTGGAATCGCC 59.809 66.667 0.00 0.00 44.57 5.54
2197 2341 2.057830 TGGAATCGCCACTGAGTGT 58.942 52.632 12.15 0.00 43.33 3.55
2300 2772 1.740025 AGGATACAAAGCGCTTCTTGC 59.260 47.619 25.24 13.31 41.41 4.01
2407 2879 6.597280 ACTTAAGAGCTTTGCCTTCTAGATTG 59.403 38.462 10.09 0.00 0.00 2.67
2430 2902 7.144722 TGATATACACAGCCAAAAAGAGTTG 57.855 36.000 0.00 0.00 0.00 3.16
2523 2997 5.540911 CACTTGAATTTTGTACCATTGCCT 58.459 37.500 0.00 0.00 0.00 4.75
2614 3088 9.778741 CTTAGGTATTCTTATTGATGTGGCTTA 57.221 33.333 0.00 0.00 0.00 3.09
2617 3091 9.289782 AGGTATTCTTATTGATGTGGCTTATTC 57.710 33.333 0.00 0.00 0.00 1.75
2636 3110 9.722056 GCTTATTCAGGACTACAAATGTTTATG 57.278 33.333 0.00 0.00 0.00 1.90
2760 3234 4.772624 TCTTGCCTCTTGTACATAGTGTCT 59.227 41.667 0.00 0.00 0.00 3.41
2762 3236 4.086457 TGCCTCTTGTACATAGTGTCTCA 58.914 43.478 0.00 0.00 0.00 3.27
2763 3237 4.711846 TGCCTCTTGTACATAGTGTCTCAT 59.288 41.667 0.00 0.00 0.00 2.90
2764 3238 5.163509 TGCCTCTTGTACATAGTGTCTCATC 60.164 44.000 0.00 0.00 0.00 2.92
2765 3239 5.068460 GCCTCTTGTACATAGTGTCTCATCT 59.932 44.000 0.00 0.00 0.00 2.90
2766 3240 6.263392 GCCTCTTGTACATAGTGTCTCATCTA 59.737 42.308 0.00 0.00 0.00 1.98
2767 3241 7.040062 GCCTCTTGTACATAGTGTCTCATCTAT 60.040 40.741 0.00 0.00 0.00 1.98
2768 3242 8.855110 CCTCTTGTACATAGTGTCTCATCTATT 58.145 37.037 0.00 0.00 0.00 1.73
2876 3406 9.706691 TTGTTTAGGACTACTTTTGTGATCTAG 57.293 33.333 0.00 0.00 0.00 2.43
2879 3409 8.645814 TTAGGACTACTTTTGTGATCTAGACA 57.354 34.615 0.00 0.00 0.00 3.41
3284 3814 3.484953 TGTGGGTCTATACAGGGTCTT 57.515 47.619 0.00 0.00 0.00 3.01
3515 4045 9.609346 GCTTCCTTTTAATTACATCCTACTGTA 57.391 33.333 0.00 0.00 0.00 2.74
3653 4188 8.269424 CGATTATATTGTACTTGAGCACTTCAC 58.731 37.037 0.00 0.00 34.94 3.18
3673 4208 2.369860 ACAGTGATCTGCCTGTGAGAAA 59.630 45.455 10.98 0.00 44.77 2.52
3722 4257 4.936891 AGACTGCTGCCTTTTTAAGTTTG 58.063 39.130 0.00 0.00 0.00 2.93
3808 4344 8.344098 ACTTTTTGCAATACAATTGAAACCATG 58.656 29.630 13.59 3.60 38.31 3.66
3918 4478 2.783828 AGCGAATGTACTCCTCGATG 57.216 50.000 13.58 0.00 34.52 3.84
3974 4535 4.730657 GAGCAAAAAGATGGTCATGTGAG 58.269 43.478 1.94 0.00 44.99 3.51
3975 4536 4.401022 AGCAAAAAGATGGTCATGTGAGA 58.599 39.130 0.00 0.00 0.00 3.27
4211 4802 5.952347 GGAGGTTTAAAGTCCATCCTTCATT 59.048 40.000 10.48 0.00 0.00 2.57
4292 4883 7.338800 TGAATTGTTCTTTTGCTCTTCTCTT 57.661 32.000 0.00 0.00 0.00 2.85
4438 5031 6.782082 AAGAATGAAAAATTCTCCCTAGCC 57.218 37.500 1.30 0.00 37.38 3.93
4648 5246 7.966246 TGCAACAATTTCTCATATTTTTGCT 57.034 28.000 15.91 0.00 43.70 3.91
4678 5276 0.460284 CCAGAATCCAGGAACGTCGG 60.460 60.000 0.00 0.00 0.00 4.79
4918 5525 8.293867 CGTCCCAAAATAAGTGTCTTTGATTTA 58.706 33.333 0.00 0.00 32.87 1.40
5013 5620 2.694109 ACCTAAGCTTATCCCTGACGTC 59.306 50.000 9.11 9.11 0.00 4.34
5288 5895 0.895100 ATTGTGCAGTTCGGGCATGT 60.895 50.000 0.00 0.00 44.11 3.21
5470 6077 5.431420 TTTGTTATGTGCGACAGATTGTT 57.569 34.783 0.00 0.00 0.00 2.83
5474 6081 0.307453 TGTGCGACAGATTGTTGTGC 59.693 50.000 0.00 0.00 34.26 4.57
5528 6135 2.428171 GCATGATTTAGGGAGCAGCAAA 59.572 45.455 0.00 0.00 0.00 3.68
5557 6165 6.380274 TCCATCTAGTTGTTATCTCGACCTTT 59.620 38.462 0.30 0.00 0.00 3.11
5561 6169 5.401531 AGTTGTTATCTCGACCTTTGCTA 57.598 39.130 0.00 0.00 0.00 3.49
5574 6182 6.759827 TCGACCTTTGCTAAATCCTACATAAC 59.240 38.462 0.00 0.00 0.00 1.89
5575 6183 6.018180 CGACCTTTGCTAAATCCTACATAACC 60.018 42.308 0.00 0.00 0.00 2.85
5576 6184 6.970191 ACCTTTGCTAAATCCTACATAACCT 58.030 36.000 0.00 0.00 0.00 3.50
5577 6185 7.410991 ACCTTTGCTAAATCCTACATAACCTT 58.589 34.615 0.00 0.00 0.00 3.50
5586 6194 7.682787 AATCCTACATAACCTTCTCTGTCAT 57.317 36.000 0.00 0.00 0.00 3.06
5609 6217 1.071385 CCTAGGCTCCCAAGTGCATAG 59.929 57.143 0.00 0.00 43.15 2.23
5613 6221 1.587547 GCTCCCAAGTGCATAGCTAC 58.412 55.000 0.00 0.00 32.66 3.58
5639 6247 3.660111 GTTGCCGCCTGAACGCTT 61.660 61.111 0.00 0.00 0.00 4.68
5720 6328 2.826725 GGGCGTCTATAATACTGGCTCT 59.173 50.000 0.00 0.00 0.00 4.09
5735 6343 5.851720 ACTGGCTCTACATGACATTATCAG 58.148 41.667 0.00 1.68 41.91 2.90
5744 6352 8.758829 TCTACATGACATTATCAGTACACCTTT 58.241 33.333 0.00 0.00 41.91 3.11
5779 6387 8.912988 CCATGAAACTGGCTTTAATTTATAGGA 58.087 33.333 0.00 0.00 0.00 2.94
5802 6410 3.181467 CCCAGCTTTCAACAACAATTGGA 60.181 43.478 10.83 0.00 34.12 3.53
5814 6422 8.869109 TCAACAACAATTGGATTTAATCTTCCT 58.131 29.630 10.83 0.00 32.95 3.36
5929 6556 8.235226 GCTTGTTATTGACCTCTTTACTTAACC 58.765 37.037 0.00 0.00 0.00 2.85
6020 6647 4.134563 GGTGGAGTTAGCTTGTTTTCAGA 58.865 43.478 0.00 0.00 0.00 3.27
6085 6712 8.208718 TGCATGTTATCAATAGGTGTTACTTC 57.791 34.615 0.00 0.00 0.00 3.01
6109 6736 2.884012 CCCTGTGCATGTTTACTGTCAA 59.116 45.455 0.00 0.00 0.00 3.18
6123 6750 8.682710 TGTTTACTGTCAATTCTGCTTTAGTTT 58.317 29.630 0.00 0.00 0.00 2.66
6128 6783 9.289782 ACTGTCAATTCTGCTTTAGTTTAGAAT 57.710 29.630 0.00 0.00 40.53 2.40
6197 6854 0.106708 GGATTCCAGCGCACCTGATA 59.893 55.000 11.47 0.00 44.64 2.15
6202 6859 1.209261 TCCAGCGCACCTGATATTGAA 59.791 47.619 11.47 0.00 44.64 2.69
6293 6950 5.800296 TGATCGAAGTTTGGAATAAGGTGA 58.200 37.500 0.00 0.00 0.00 4.02
6355 7012 5.014755 ACATATGGTTCCCTGGTAACTTTCA 59.985 40.000 7.80 0.00 37.61 2.69
6423 7080 9.584008 AGATTGATCTTGTGGATAATATTGCTT 57.416 29.630 0.00 0.00 34.33 3.91
6557 7214 6.663734 TGATACAGTGGATTCAGAGTCTCTA 58.336 40.000 0.94 0.00 0.00 2.43
6597 7257 9.970395 GTGAAAATGATGATTTAATGGCATCTA 57.030 29.630 0.00 0.00 39.24 1.98
6618 7278 3.827008 AAGAATCGATTGCTGAGCCTA 57.173 42.857 16.96 0.00 0.00 3.93
6633 7293 3.243670 TGAGCCTATCGAGATGAAAGCAG 60.244 47.826 0.00 0.00 0.00 4.24
6640 7300 3.995199 TCGAGATGAAAGCAGTGAACTT 58.005 40.909 0.00 0.00 0.00 2.66
6653 7313 4.785341 GCAGTGAACTTTGAACTGTTACCG 60.785 45.833 0.00 0.00 42.65 4.02
6660 7320 5.374071 ACTTTGAACTGTTACCGGAAGATT 58.626 37.500 9.46 0.00 0.00 2.40
6678 7338 9.026074 CGGAAGATTGTTTTAGAGAGTCTAATC 57.974 37.037 0.00 0.00 38.60 1.75
6703 7363 4.369182 CCGGAAGCTATAAGTACAAGTGG 58.631 47.826 0.00 0.00 0.00 4.00
6737 7397 2.234908 AGAGCCAGTATCCACTTGTCAC 59.765 50.000 0.00 0.00 30.46 3.67
6777 7437 0.322816 TGGGACAGGATTGCAAGAGC 60.323 55.000 4.94 0.00 42.57 4.09
6797 7457 4.264253 AGCTGCTGCAGTTAATTGATACA 58.736 39.130 28.50 0.00 42.74 2.29
6908 7568 5.536554 CTGCAGAACAGTAGGTATGTTTG 57.463 43.478 8.42 0.00 40.86 2.93
6909 7569 4.968259 TGCAGAACAGTAGGTATGTTTGT 58.032 39.130 0.00 0.00 40.86 2.83
6910 7570 6.104146 TGCAGAACAGTAGGTATGTTTGTA 57.896 37.500 0.00 0.00 40.86 2.41
6911 7571 6.163476 TGCAGAACAGTAGGTATGTTTGTAG 58.837 40.000 0.00 0.00 40.86 2.74
6912 7572 6.164176 GCAGAACAGTAGGTATGTTTGTAGT 58.836 40.000 0.00 0.00 40.86 2.73
6913 7573 6.090898 GCAGAACAGTAGGTATGTTTGTAGTG 59.909 42.308 0.00 0.00 40.86 2.74
6923 8013 5.918576 GGTATGTTTGTAGTGCCTTTTGTTC 59.081 40.000 0.00 0.00 0.00 3.18
6929 8019 3.311322 TGTAGTGCCTTTTGTTCGAAGTG 59.689 43.478 0.00 0.00 0.00 3.16
6930 8020 2.365582 AGTGCCTTTTGTTCGAAGTGT 58.634 42.857 0.00 0.00 0.00 3.55
6938 8028 5.804979 CCTTTTGTTCGAAGTGTTGTTGATT 59.195 36.000 0.00 0.00 0.00 2.57
6969 8062 8.931385 AATAATATGTGATTCCAAGTTTGCAC 57.069 30.769 0.00 0.00 0.00 4.57
6970 8063 6.594788 AATATGTGATTCCAAGTTTGCACT 57.405 33.333 0.00 0.00 33.11 4.40
6972 8065 2.361757 TGTGATTCCAAGTTTGCACTGG 59.638 45.455 0.00 0.00 31.60 4.00
6973 8066 2.622942 GTGATTCCAAGTTTGCACTGGA 59.377 45.455 2.62 2.62 31.60 3.86
6974 8067 2.886523 TGATTCCAAGTTTGCACTGGAG 59.113 45.455 6.22 0.00 33.99 3.86
7031 8124 6.260714 ACGATGTATCATTTATGCAGCAGAAA 59.739 34.615 17.24 17.24 36.50 2.52
7049 8142 8.653338 CAGCAGAAATCTGTTTTGGATAAATTG 58.347 33.333 11.77 0.00 45.45 2.32
7155 8248 6.069088 TCCCTCTTTTGCCCTGATTTATCTTA 60.069 38.462 0.00 0.00 0.00 2.10
7159 8252 4.871871 TTGCCCTGATTTATCTTACCCA 57.128 40.909 0.00 0.00 0.00 4.51
7175 8268 8.910351 ATCTTACCCATCTTATTTGTAAGAGC 57.090 34.615 13.72 0.00 46.03 4.09
7176 8269 8.090788 TCTTACCCATCTTATTTGTAAGAGCT 57.909 34.615 6.37 0.00 41.25 4.09
7177 8270 8.548877 TCTTACCCATCTTATTTGTAAGAGCTT 58.451 33.333 6.37 0.00 41.25 3.74
7178 8271 9.178758 CTTACCCATCTTATTTGTAAGAGCTTT 57.821 33.333 0.00 0.00 40.33 3.51
7179 8272 7.396540 ACCCATCTTATTTGTAAGAGCTTTG 57.603 36.000 4.47 0.00 39.19 2.77
7180 8273 7.175104 ACCCATCTTATTTGTAAGAGCTTTGA 58.825 34.615 4.47 0.00 39.19 2.69
7181 8274 7.121315 ACCCATCTTATTTGTAAGAGCTTTGAC 59.879 37.037 4.47 0.00 39.19 3.18
7182 8275 7.337942 CCCATCTTATTTGTAAGAGCTTTGACT 59.662 37.037 4.47 0.00 39.19 3.41
7183 8276 8.734386 CCATCTTATTTGTAAGAGCTTTGACTT 58.266 33.333 4.47 0.00 39.19 3.01
7184 8277 9.766277 CATCTTATTTGTAAGAGCTTTGACTTC 57.234 33.333 4.47 0.00 39.19 3.01
7185 8278 8.324163 TCTTATTTGTAAGAGCTTTGACTTCC 57.676 34.615 0.00 0.00 32.75 3.46
7186 8279 5.966742 ATTTGTAAGAGCTTTGACTTCCC 57.033 39.130 0.00 0.00 0.00 3.97
7187 8280 3.040147 TGTAAGAGCTTTGACTTCCCG 57.960 47.619 0.00 0.00 0.00 5.14
7188 8281 2.367567 TGTAAGAGCTTTGACTTCCCGT 59.632 45.455 0.00 0.00 0.00 5.28
7189 8282 2.171341 AAGAGCTTTGACTTCCCGTC 57.829 50.000 0.00 0.00 43.14 4.79
7190 8283 0.038159 AGAGCTTTGACTTCCCGTCG 60.038 55.000 0.00 0.00 45.87 5.12
7191 8284 0.319641 GAGCTTTGACTTCCCGTCGT 60.320 55.000 0.00 0.00 45.87 4.34
7192 8285 0.319641 AGCTTTGACTTCCCGTCGTC 60.320 55.000 0.00 0.00 45.87 4.20
7193 8286 0.319641 GCTTTGACTTCCCGTCGTCT 60.320 55.000 0.00 0.00 45.87 4.18
7194 8287 1.872653 GCTTTGACTTCCCGTCGTCTT 60.873 52.381 0.00 0.00 45.87 3.01
7195 8288 2.608752 GCTTTGACTTCCCGTCGTCTTA 60.609 50.000 0.00 0.00 45.87 2.10
7196 8289 3.846360 CTTTGACTTCCCGTCGTCTTAT 58.154 45.455 0.00 0.00 45.87 1.73
7197 8290 3.947910 TTGACTTCCCGTCGTCTTATT 57.052 42.857 0.00 0.00 45.87 1.40
7198 8291 3.947910 TGACTTCCCGTCGTCTTATTT 57.052 42.857 0.00 0.00 45.87 1.40
7199 8292 3.581755 TGACTTCCCGTCGTCTTATTTG 58.418 45.455 0.00 0.00 45.87 2.32
7200 8293 3.006110 TGACTTCCCGTCGTCTTATTTGT 59.994 43.478 0.00 0.00 45.87 2.83
7201 8294 4.218200 TGACTTCCCGTCGTCTTATTTGTA 59.782 41.667 0.00 0.00 45.87 2.41
7216 8309 7.097192 TCTTATTTGTAAGACATTGAGAGCGT 58.903 34.615 0.00 0.00 31.69 5.07
7252 8348 9.031360 GGTTATTTTCTCAGTTCTTTTGGTTTC 57.969 33.333 0.00 0.00 0.00 2.78
7264 8360 6.377327 TCTTTTGGTTTCAGTCTCATTGTC 57.623 37.500 0.00 0.00 0.00 3.18
7267 8363 2.711009 TGGTTTCAGTCTCATTGTCCCT 59.289 45.455 0.00 0.00 0.00 4.20
7268 8364 3.138283 TGGTTTCAGTCTCATTGTCCCTT 59.862 43.478 0.00 0.00 0.00 3.95
7269 8365 3.503748 GGTTTCAGTCTCATTGTCCCTTG 59.496 47.826 0.00 0.00 0.00 3.61
7270 8366 4.137543 GTTTCAGTCTCATTGTCCCTTGT 58.862 43.478 0.00 0.00 0.00 3.16
7271 8367 4.437682 TTCAGTCTCATTGTCCCTTGTT 57.562 40.909 0.00 0.00 0.00 2.83
7272 8368 4.008074 TCAGTCTCATTGTCCCTTGTTC 57.992 45.455 0.00 0.00 0.00 3.18
7273 8369 3.077359 CAGTCTCATTGTCCCTTGTTCC 58.923 50.000 0.00 0.00 0.00 3.62
7281 8377 0.951040 GTCCCTTGTTCCTGTGCGAG 60.951 60.000 0.00 0.00 0.00 5.03
7291 8387 1.831106 TCCTGTGCGAGTCCACAATAT 59.169 47.619 13.29 0.00 44.37 1.28
7314 8410 9.956640 ATATAGCTCAGAGAAATAAATGAAGGG 57.043 33.333 0.00 0.00 0.00 3.95
7315 8411 4.886489 AGCTCAGAGAAATAAATGAAGGGC 59.114 41.667 0.00 0.00 0.00 5.19
7355 8451 7.523219 TCCATTTACTTTTGTAACGCATAGTG 58.477 34.615 0.00 0.00 43.76 2.74
7358 8454 9.472995 CATTTACTTTTGTAACGCATAGTGTAG 57.527 33.333 0.00 0.00 43.76 2.74
7368 8464 3.927142 ACGCATAGTGTAGCTTTGACTTC 59.073 43.478 0.00 0.00 0.00 3.01
7401 8497 9.065798 TCTCAACAATTTGACATTAAGATGTGA 57.934 29.630 2.79 0.00 46.27 3.58
7489 8585 5.670361 ACCCTCATATGGCTAACCTAAGAAA 59.330 40.000 2.13 0.00 36.63 2.52
7492 8588 7.824779 CCCTCATATGGCTAACCTAAGAAATAC 59.175 40.741 2.13 0.00 36.63 1.89
7572 8668 4.759183 GCAGGATCCAAGGAATCATTCTAC 59.241 45.833 15.82 0.00 0.00 2.59
7586 8682 8.411683 GGAATCATTCTACTTCATGCTGAAAAT 58.588 33.333 0.00 0.00 35.73 1.82
7595 8691 6.168389 ACTTCATGCTGAAAATTTGGATTCC 58.832 36.000 0.00 0.00 35.73 3.01
7613 8709 9.699410 TTGGATTCCTATGAGATTTATGTGTTT 57.301 29.630 3.95 0.00 0.00 2.83
7662 8758 0.037303 AGTGGTGTCTTGCCTCATGG 59.963 55.000 0.00 0.00 0.00 3.66
7687 8783 5.002464 GCATGTGCTCCACTAATTTTGAT 57.998 39.130 0.00 0.00 38.21 2.57
7690 8786 7.205297 GCATGTGCTCCACTAATTTTGATATT 58.795 34.615 0.00 0.00 38.21 1.28
7698 8794 7.479980 TCCACTAATTTTGATATTTTGCTCCG 58.520 34.615 0.00 0.00 0.00 4.63
7699 8795 7.122055 TCCACTAATTTTGATATTTTGCTCCGT 59.878 33.333 0.00 0.00 0.00 4.69
7713 8809 3.674997 TGCTCCGTGAAATCTTAAAGCT 58.325 40.909 0.00 0.00 0.00 3.74
7721 8817 6.346040 CCGTGAAATCTTAAAGCTTGCAAAAG 60.346 38.462 0.00 0.62 0.00 2.27
7725 8821 8.413229 TGAAATCTTAAAGCTTGCAAAAGTACT 58.587 29.630 0.00 0.00 0.00 2.73
7733 8829 3.611113 GCTTGCAAAAGTACTCATGCATG 59.389 43.478 26.67 26.94 46.97 4.06
7745 8841 3.244665 ACTCATGCATGTTCCAAGAGACA 60.245 43.478 25.43 1.46 33.56 3.41
7746 8842 3.076621 TCATGCATGTTCCAAGAGACAC 58.923 45.455 25.43 0.00 0.00 3.67
7793 8889 2.079170 TCATTTTCCAGCACAACCCA 57.921 45.000 0.00 0.00 0.00 4.51
7796 8892 0.324738 TTTTCCAGCACAACCCACCA 60.325 50.000 0.00 0.00 0.00 4.17
7797 8893 0.105760 TTTCCAGCACAACCCACCAT 60.106 50.000 0.00 0.00 0.00 3.55
7798 8894 0.105760 TTCCAGCACAACCCACCATT 60.106 50.000 0.00 0.00 0.00 3.16
7799 8895 0.774276 TCCAGCACAACCCACCATTA 59.226 50.000 0.00 0.00 0.00 1.90
7800 8896 0.887933 CCAGCACAACCCACCATTAC 59.112 55.000 0.00 0.00 0.00 1.89
7801 8897 1.614996 CAGCACAACCCACCATTACA 58.385 50.000 0.00 0.00 0.00 2.41
7802 8898 1.959985 CAGCACAACCCACCATTACAA 59.040 47.619 0.00 0.00 0.00 2.41
7803 8899 2.562298 CAGCACAACCCACCATTACAAT 59.438 45.455 0.00 0.00 0.00 2.71
7819 8918 6.238731 CCATTACAATGTACCTATGCAACCTG 60.239 42.308 0.00 0.00 34.60 4.00
7839 8938 0.582005 GTCAGTTGACGCACCAAGTC 59.418 55.000 0.00 0.00 38.98 3.01
7854 8953 5.036737 CACCAAGTCAACACAAAGAATGTC 58.963 41.667 0.00 0.00 41.46 3.06
7855 8954 4.704540 ACCAAGTCAACACAAAGAATGTCA 59.295 37.500 0.00 0.00 41.46 3.58
7856 8955 5.184864 ACCAAGTCAACACAAAGAATGTCAA 59.815 36.000 0.00 0.00 41.46 3.18
7857 8956 6.098679 CCAAGTCAACACAAAGAATGTCAAA 58.901 36.000 0.00 0.00 41.46 2.69
7858 8957 6.034898 CCAAGTCAACACAAAGAATGTCAAAC 59.965 38.462 0.00 0.00 41.46 2.93
7859 8958 6.515272 AGTCAACACAAAGAATGTCAAACT 57.485 33.333 0.00 0.00 41.46 2.66
7860 8959 6.555315 AGTCAACACAAAGAATGTCAAACTC 58.445 36.000 0.00 0.00 41.46 3.01
7861 8960 6.150976 AGTCAACACAAAGAATGTCAAACTCA 59.849 34.615 0.00 0.00 41.46 3.41
7862 8961 6.470235 GTCAACACAAAGAATGTCAAACTCAG 59.530 38.462 0.00 0.00 41.46 3.35
7863 8962 6.374053 TCAACACAAAGAATGTCAAACTCAGA 59.626 34.615 0.00 0.00 41.46 3.27
7864 8963 6.949352 ACACAAAGAATGTCAAACTCAGAT 57.051 33.333 0.00 0.00 41.46 2.90
7865 8964 7.338800 ACACAAAGAATGTCAAACTCAGATT 57.661 32.000 0.00 0.00 41.46 2.40
7866 8965 7.775120 ACACAAAGAATGTCAAACTCAGATTT 58.225 30.769 0.00 0.00 41.46 2.17
7867 8966 8.902806 ACACAAAGAATGTCAAACTCAGATTTA 58.097 29.630 0.00 0.00 41.46 1.40
7868 8967 9.903682 CACAAAGAATGTCAAACTCAGATTTAT 57.096 29.630 0.00 0.00 41.46 1.40
7873 8972 9.956640 AGAATGTCAAACTCAGATTTATTCTCT 57.043 29.630 0.00 0.00 29.19 3.10
7894 8993 7.615582 CTCTATTAAGAGCAACAACCAATGA 57.384 36.000 0.00 0.00 42.79 2.57
7895 8994 7.994425 TCTATTAAGAGCAACAACCAATGAA 57.006 32.000 0.00 0.00 0.00 2.57
7896 8995 8.402798 TCTATTAAGAGCAACAACCAATGAAA 57.597 30.769 0.00 0.00 0.00 2.69
7897 8996 8.855110 TCTATTAAGAGCAACAACCAATGAAAA 58.145 29.630 0.00 0.00 0.00 2.29
7898 8997 9.474920 CTATTAAGAGCAACAACCAATGAAAAA 57.525 29.630 0.00 0.00 0.00 1.94
7899 8998 8.907222 ATTAAGAGCAACAACCAATGAAAAAT 57.093 26.923 0.00 0.00 0.00 1.82
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
9 10 3.448660 AGAAAAGTTGATGGCTATTGGGC 59.551 43.478 0.00 0.00 41.27 5.36
10 11 6.966534 ATAGAAAAGTTGATGGCTATTGGG 57.033 37.500 0.00 0.00 0.00 4.12
76 77 3.294493 GCCCGTGTTGTGGTGCAT 61.294 61.111 0.00 0.00 0.00 3.96
85 86 1.238439 CTGTGAGATTTGCCCGTGTT 58.762 50.000 0.00 0.00 0.00 3.32
114 115 1.988107 GGATGGGGGAGAGAATATGCA 59.012 52.381 0.00 0.00 0.00 3.96
119 120 0.764752 GTCCGGATGGGGGAGAGAAT 60.765 60.000 7.81 0.00 33.31 2.40
142 143 1.132834 GCCATCAATGTCGTTCATGCA 59.867 47.619 0.00 0.00 36.81 3.96
143 144 1.831343 GCCATCAATGTCGTTCATGC 58.169 50.000 0.00 0.00 36.81 4.06
156 157 1.199615 TGAATCAGGTACCGCCATCA 58.800 50.000 6.18 7.76 40.61 3.07
170 171 4.320348 GCTTGCTATGAGGATGCTTGAATC 60.320 45.833 0.00 0.00 34.64 2.52
205 206 4.873827 AGACAACTTTCGTTCTTTGCTACA 59.126 37.500 0.00 0.00 0.00 2.74
206 207 5.198274 CAGACAACTTTCGTTCTTTGCTAC 58.802 41.667 0.00 0.00 0.00 3.58
237 238 1.482593 CCTACTTCAAGCTCACCGGAT 59.517 52.381 9.46 0.00 0.00 4.18
238 239 0.895530 CCTACTTCAAGCTCACCGGA 59.104 55.000 9.46 0.00 0.00 5.14
260 261 0.326264 GAAGGAGTGGAGGCACATGT 59.674 55.000 0.00 0.00 0.00 3.21
277 278 2.983907 TTGTCTTACACGTGGTGGAA 57.016 45.000 21.57 7.34 37.94 3.53
304 309 3.326836 TCATTGACACTTCCGTATGCA 57.673 42.857 0.00 0.00 0.00 3.96
322 327 5.651612 ACATCCCCTGATACATGATTTCA 57.348 39.130 0.00 0.00 0.00 2.69
327 332 3.122480 ACCAACATCCCCTGATACATGA 58.878 45.455 0.00 0.00 0.00 3.07
359 368 7.906199 AGCATGACTACTCTTTAAGGACTAT 57.094 36.000 0.00 0.00 0.00 2.12
379 388 1.153086 GATGGGGTCGCTGAAGCAT 60.153 57.895 2.79 0.00 42.21 3.79
384 393 4.770362 TCGGGATGGGGTCGCTGA 62.770 66.667 0.00 0.00 37.62 4.26
418 427 8.560355 TCTGAATTTCAAGGATACGATCAAAA 57.440 30.769 0.01 0.00 46.39 2.44
429 438 5.535783 TGAAGCACATTCTGAATTTCAAGGA 59.464 36.000 11.03 0.00 38.83 3.36
437 446 3.350833 GGAGGTGAAGCACATTCTGAAT 58.649 45.455 0.00 0.00 38.83 2.57
451 460 2.305927 GAGAAAATGGACAGGGAGGTGA 59.694 50.000 0.00 0.00 0.00 4.02
469 478 3.043418 TGATCAATGAGCATCCAGGAGA 58.957 45.455 0.00 0.00 0.00 3.71
485 494 5.526506 AGATGTCGAGATGTTGATGATCA 57.473 39.130 0.00 0.00 0.00 2.92
525 534 4.512198 TCAACGCAAAAGGAGTTATTCGAA 59.488 37.500 0.00 0.00 37.42 3.71
544 553 1.728971 CACGGAGCTTGATGAGTCAAC 59.271 52.381 0.00 0.00 39.36 3.18
547 556 2.378028 GCACGGAGCTTGATGAGTC 58.622 57.895 0.00 0.00 41.15 3.36
572 581 3.574396 GGATGGTTCGTCAGATGAGGATA 59.426 47.826 6.10 0.00 38.53 2.59
573 582 2.366916 GGATGGTTCGTCAGATGAGGAT 59.633 50.000 6.10 0.00 38.53 3.24
657 737 7.117667 GTCGGCCAAAATATTCAAATTCAGTTT 59.882 33.333 2.24 0.00 0.00 2.66
664 744 3.697045 TCCGTCGGCCAAAATATTCAAAT 59.303 39.130 6.34 0.00 0.00 2.32
704 784 2.787994 ACTTCATCACCTGCTTTCCAG 58.212 47.619 0.00 0.00 41.41 3.86
705 785 2.957402 ACTTCATCACCTGCTTTCCA 57.043 45.000 0.00 0.00 0.00 3.53
706 786 3.686726 CAGTACTTCATCACCTGCTTTCC 59.313 47.826 0.00 0.00 0.00 3.13
707 787 4.319177 ACAGTACTTCATCACCTGCTTTC 58.681 43.478 0.00 0.00 0.00 2.62
708 788 4.357918 ACAGTACTTCATCACCTGCTTT 57.642 40.909 0.00 0.00 0.00 3.51
709 789 4.283467 TGTACAGTACTTCATCACCTGCTT 59.717 41.667 12.07 0.00 0.00 3.91
710 790 3.832490 TGTACAGTACTTCATCACCTGCT 59.168 43.478 12.07 0.00 0.00 4.24
712 792 5.965922 TGATGTACAGTACTTCATCACCTG 58.034 41.667 20.31 2.37 40.73 4.00
718 798 5.862323 GTCGTTGTGATGTACAGTACTTCAT 59.138 40.000 24.68 7.12 42.42 2.57
719 799 5.217393 GTCGTTGTGATGTACAGTACTTCA 58.783 41.667 20.31 20.31 41.10 3.02
720 800 4.320164 CGTCGTTGTGATGTACAGTACTTC 59.680 45.833 16.39 16.39 41.10 3.01
721 801 4.224433 CGTCGTTGTGATGTACAGTACTT 58.776 43.478 12.07 5.55 41.10 2.24
722 802 3.365666 CCGTCGTTGTGATGTACAGTACT 60.366 47.826 12.07 0.00 41.10 2.73
724 804 2.553602 ACCGTCGTTGTGATGTACAGTA 59.446 45.455 0.33 0.00 41.10 2.74
726 806 1.983605 GACCGTCGTTGTGATGTACAG 59.016 52.381 0.33 0.00 41.10 2.74
727 807 1.610038 AGACCGTCGTTGTGATGTACA 59.390 47.619 0.00 0.00 37.56 2.90
728 808 2.342910 AGACCGTCGTTGTGATGTAC 57.657 50.000 0.00 0.00 31.20 2.90
729 809 3.181494 CCATAGACCGTCGTTGTGATGTA 60.181 47.826 0.00 0.00 31.20 2.29
730 810 2.416836 CCATAGACCGTCGTTGTGATGT 60.417 50.000 0.00 0.00 31.20 3.06
733 830 1.200716 GTCCATAGACCGTCGTTGTGA 59.799 52.381 0.00 0.00 37.00 3.58
1449 1570 3.804325 CGATTCCTATTCGCAGTTGTCAT 59.196 43.478 0.00 0.00 0.00 3.06
1486 1616 2.025699 GGCCACAGTAGTCCCCATAAAA 60.026 50.000 0.00 0.00 0.00 1.52
1500 1630 4.815308 CAGATCTTAAGAATCTGGCCACAG 59.185 45.833 23.51 0.00 46.30 3.66
1526 1656 8.588472 ACTGAGCAGTATAATTCATGCATACTA 58.412 33.333 0.00 0.00 40.43 1.82
1542 1672 6.845758 TTAAGTAAGCCTAACTGAGCAGTA 57.154 37.500 3.21 0.00 41.58 2.74
1670 1800 1.751544 GCATGAGCCATGACCAGCA 60.752 57.895 16.46 0.00 43.81 4.41
1717 1847 6.684613 GCAGCATTATCCCAATTTGATCAAGT 60.685 38.462 8.41 2.46 0.00 3.16
1802 1932 7.174413 AGATCTAGCAGCTCTATAGAATGTGA 58.826 38.462 0.00 6.70 0.00 3.58
1859 1989 2.789917 GTGCCAGATTGCAGCTCG 59.210 61.111 0.00 0.00 43.02 5.03
1896 2026 4.171005 CCATTGCATCACAGTGAAACATC 58.829 43.478 7.50 0.00 41.43 3.06
2000 2144 0.175760 TGCTAGATTCGCCACTGGTC 59.824 55.000 0.00 0.00 0.00 4.02
2001 2145 0.176680 CTGCTAGATTCGCCACTGGT 59.823 55.000 0.00 0.00 0.00 4.00
2002 2146 0.531532 CCTGCTAGATTCGCCACTGG 60.532 60.000 0.00 0.00 0.00 4.00
2003 2147 0.461548 TCCTGCTAGATTCGCCACTG 59.538 55.000 0.00 0.00 0.00 3.66
2004 2148 0.461961 GTCCTGCTAGATTCGCCACT 59.538 55.000 0.00 0.00 0.00 4.00
2005 2149 0.175760 TGTCCTGCTAGATTCGCCAC 59.824 55.000 0.00 0.00 0.00 5.01
2006 2150 1.123077 ATGTCCTGCTAGATTCGCCA 58.877 50.000 0.00 0.00 0.00 5.69
2007 2151 1.869767 CAATGTCCTGCTAGATTCGCC 59.130 52.381 0.00 0.00 0.00 5.54
2008 2152 1.869767 CCAATGTCCTGCTAGATTCGC 59.130 52.381 0.00 0.00 0.00 4.70
2009 2153 3.459232 TCCAATGTCCTGCTAGATTCG 57.541 47.619 0.00 0.00 0.00 3.34
2010 2154 4.070716 CCATCCAATGTCCTGCTAGATTC 58.929 47.826 0.00 0.00 0.00 2.52
2011 2155 3.461085 ACCATCCAATGTCCTGCTAGATT 59.539 43.478 0.00 0.00 0.00 2.40
2012 2156 3.051581 ACCATCCAATGTCCTGCTAGAT 58.948 45.455 0.00 0.00 0.00 1.98
2013 2157 2.481441 ACCATCCAATGTCCTGCTAGA 58.519 47.619 0.00 0.00 0.00 2.43
2014 2158 3.244353 CCTACCATCCAATGTCCTGCTAG 60.244 52.174 0.00 0.00 0.00 3.42
2015 2159 2.705658 CCTACCATCCAATGTCCTGCTA 59.294 50.000 0.00 0.00 0.00 3.49
2016 2160 1.492176 CCTACCATCCAATGTCCTGCT 59.508 52.381 0.00 0.00 0.00 4.24
2017 2161 1.972872 CCTACCATCCAATGTCCTGC 58.027 55.000 0.00 0.00 0.00 4.85
2018 2162 1.492176 AGCCTACCATCCAATGTCCTG 59.508 52.381 0.00 0.00 0.00 3.86
2019 2163 1.898863 AGCCTACCATCCAATGTCCT 58.101 50.000 0.00 0.00 0.00 3.85
2020 2164 2.736670 AAGCCTACCATCCAATGTCC 57.263 50.000 0.00 0.00 0.00 4.02
2021 2165 5.417580 TGTTTTAAGCCTACCATCCAATGTC 59.582 40.000 0.00 0.00 0.00 3.06
2022 2166 5.185056 GTGTTTTAAGCCTACCATCCAATGT 59.815 40.000 0.00 0.00 0.00 2.71
2023 2167 5.184864 TGTGTTTTAAGCCTACCATCCAATG 59.815 40.000 0.00 0.00 0.00 2.82
2024 2168 5.329399 TGTGTTTTAAGCCTACCATCCAAT 58.671 37.500 0.00 0.00 0.00 3.16
2025 2169 4.730966 TGTGTTTTAAGCCTACCATCCAA 58.269 39.130 0.00 0.00 0.00 3.53
2026 2170 4.374689 TGTGTTTTAAGCCTACCATCCA 57.625 40.909 0.00 0.00 0.00 3.41
2027 2171 5.715434 TTTGTGTTTTAAGCCTACCATCC 57.285 39.130 0.00 0.00 0.00 3.51
2028 2172 7.330946 GGAAATTTGTGTTTTAAGCCTACCATC 59.669 37.037 0.00 0.00 0.00 3.51
2029 2173 7.016170 AGGAAATTTGTGTTTTAAGCCTACCAT 59.984 33.333 0.00 0.00 0.00 3.55
2030 2174 6.325286 AGGAAATTTGTGTTTTAAGCCTACCA 59.675 34.615 0.00 0.00 0.00 3.25
2031 2175 6.755206 AGGAAATTTGTGTTTTAAGCCTACC 58.245 36.000 0.00 0.00 0.00 3.18
2032 2176 9.406828 CTTAGGAAATTTGTGTTTTAAGCCTAC 57.593 33.333 0.00 0.00 0.00 3.18
2033 2177 9.138596 ACTTAGGAAATTTGTGTTTTAAGCCTA 57.861 29.630 0.00 0.00 0.00 3.93
2034 2178 8.018537 ACTTAGGAAATTTGTGTTTTAAGCCT 57.981 30.769 0.00 0.00 0.00 4.58
2035 2179 8.141909 AGACTTAGGAAATTTGTGTTTTAAGCC 58.858 33.333 0.00 0.00 0.00 4.35
2043 2187 9.802039 TGGTAATTAGACTTAGGAAATTTGTGT 57.198 29.630 0.00 0.00 0.00 3.72
2049 2193 9.474313 TGCATTTGGTAATTAGACTTAGGAAAT 57.526 29.630 0.00 0.00 0.00 2.17
2050 2194 8.871629 TGCATTTGGTAATTAGACTTAGGAAA 57.128 30.769 0.00 0.00 0.00 3.13
2051 2195 9.474313 AATGCATTTGGTAATTAGACTTAGGAA 57.526 29.630 5.99 0.00 0.00 3.36
2052 2196 8.902806 CAATGCATTTGGTAATTAGACTTAGGA 58.097 33.333 9.83 0.00 0.00 2.94
2053 2197 7.649306 GCAATGCATTTGGTAATTAGACTTAGG 59.351 37.037 9.83 0.00 35.75 2.69
2054 2198 8.190122 TGCAATGCATTTGGTAATTAGACTTAG 58.810 33.333 9.83 0.00 35.75 2.18
2055 2199 8.060931 TGCAATGCATTTGGTAATTAGACTTA 57.939 30.769 9.83 0.00 35.75 2.24
2056 2200 6.934056 TGCAATGCATTTGGTAATTAGACTT 58.066 32.000 9.83 0.00 35.75 3.01
2057 2201 6.528537 TGCAATGCATTTGGTAATTAGACT 57.471 33.333 9.83 0.00 35.75 3.24
2058 2202 7.775397 ATTGCAATGCATTTGGTAATTAGAC 57.225 32.000 12.09 0.00 38.76 2.59
2059 2203 8.199176 CAATTGCAATGCATTTGGTAATTAGA 57.801 30.769 26.16 2.86 42.47 2.10
2060 2204 8.452534 AACAATTGCAATGCATTTGGTAATTAG 58.547 29.630 32.44 15.28 44.39 1.73
2061 2205 8.235226 CAACAATTGCAATGCATTTGGTAATTA 58.765 29.630 32.44 9.11 44.41 1.40
2062 2206 7.085116 CAACAATTGCAATGCATTTGGTAATT 58.915 30.769 32.44 21.10 44.41 1.40
2063 2207 6.613233 CAACAATTGCAATGCATTTGGTAAT 58.387 32.000 32.44 19.60 44.41 1.89
2064 2208 5.998553 CAACAATTGCAATGCATTTGGTAA 58.001 33.333 32.44 11.07 44.41 2.85
2065 2209 5.608676 CAACAATTGCAATGCATTTGGTA 57.391 34.783 32.44 11.73 44.41 3.25
2066 2210 4.491234 CAACAATTGCAATGCATTTGGT 57.509 36.364 32.44 28.13 46.21 3.67
2079 2223 4.650545 GGTGCTTTACATGCAACAATTG 57.349 40.909 3.24 3.24 46.39 2.32
2085 2229 6.828273 AGTATATTCTGGTGCTTTACATGCAA 59.172 34.615 0.00 0.00 42.41 4.08
2086 2230 6.356556 AGTATATTCTGGTGCTTTACATGCA 58.643 36.000 0.00 0.00 38.19 3.96
2087 2231 6.867662 AGTATATTCTGGTGCTTTACATGC 57.132 37.500 0.00 0.00 0.00 4.06
2088 2232 8.213518 ACAAGTATATTCTGGTGCTTTACATG 57.786 34.615 0.00 0.00 0.00 3.21
2089 2233 8.046708 TGACAAGTATATTCTGGTGCTTTACAT 58.953 33.333 0.00 0.00 0.00 2.29
2090 2234 7.390823 TGACAAGTATATTCTGGTGCTTTACA 58.609 34.615 0.00 0.00 0.00 2.41
2091 2235 7.843490 TGACAAGTATATTCTGGTGCTTTAC 57.157 36.000 0.00 0.00 0.00 2.01
2092 2236 8.100791 ACTTGACAAGTATATTCTGGTGCTTTA 58.899 33.333 19.28 0.00 40.69 1.85
2093 2237 6.942576 ACTTGACAAGTATATTCTGGTGCTTT 59.057 34.615 19.28 0.00 40.69 3.51
2094 2238 6.372659 CACTTGACAAGTATATTCTGGTGCTT 59.627 38.462 20.17 0.00 40.46 3.91
2095 2239 5.877012 CACTTGACAAGTATATTCTGGTGCT 59.123 40.000 20.17 0.00 40.46 4.40
2096 2240 5.065218 CCACTTGACAAGTATATTCTGGTGC 59.935 44.000 20.17 0.00 40.46 5.01
2097 2241 6.173339 ACCACTTGACAAGTATATTCTGGTG 58.827 40.000 20.17 5.36 40.46 4.17
2098 2242 6.374417 ACCACTTGACAAGTATATTCTGGT 57.626 37.500 20.17 17.29 40.46 4.00
2099 2243 7.987458 ACATACCACTTGACAAGTATATTCTGG 59.013 37.037 20.17 16.70 40.46 3.86
2100 2244 8.948631 ACATACCACTTGACAAGTATATTCTG 57.051 34.615 20.17 14.33 40.46 3.02
2101 2245 9.959721 AAACATACCACTTGACAAGTATATTCT 57.040 29.630 20.17 8.04 40.46 2.40
2104 2248 9.326413 GCTAAACATACCACTTGACAAGTATAT 57.674 33.333 20.17 16.72 40.46 0.86
2105 2249 8.537016 AGCTAAACATACCACTTGACAAGTATA 58.463 33.333 20.17 15.34 40.46 1.47
2106 2250 7.394816 AGCTAAACATACCACTTGACAAGTAT 58.605 34.615 20.17 13.75 40.46 2.12
2107 2251 6.765403 AGCTAAACATACCACTTGACAAGTA 58.235 36.000 20.17 6.14 40.46 2.24
2108 2252 5.621193 AGCTAAACATACCACTTGACAAGT 58.379 37.500 15.23 15.23 44.06 3.16
2109 2253 6.560253 AAGCTAAACATACCACTTGACAAG 57.440 37.500 13.77 13.77 0.00 3.16
2110 2254 8.630054 ATTAAGCTAAACATACCACTTGACAA 57.370 30.769 0.00 0.00 0.00 3.18
2111 2255 9.727859 TTATTAAGCTAAACATACCACTTGACA 57.272 29.630 0.00 0.00 0.00 3.58
2123 2267 8.966868 CCCTCCAAAATCTTATTAAGCTAAACA 58.033 33.333 0.00 0.00 0.00 2.83
2124 2268 8.967918 ACCCTCCAAAATCTTATTAAGCTAAAC 58.032 33.333 0.00 0.00 0.00 2.01
2126 2270 9.847224 CTACCCTCCAAAATCTTATTAAGCTAA 57.153 33.333 0.00 0.00 0.00 3.09
2127 2271 8.437575 CCTACCCTCCAAAATCTTATTAAGCTA 58.562 37.037 0.00 0.00 0.00 3.32
2128 2272 7.290813 CCTACCCTCCAAAATCTTATTAAGCT 58.709 38.462 0.00 0.00 0.00 3.74
2129 2273 6.016192 GCCTACCCTCCAAAATCTTATTAAGC 60.016 42.308 0.00 0.00 0.00 3.09
2130 2274 7.290813 AGCCTACCCTCCAAAATCTTATTAAG 58.709 38.462 0.00 0.00 0.00 1.85
2131 2275 7.220890 AGCCTACCCTCCAAAATCTTATTAA 57.779 36.000 0.00 0.00 0.00 1.40
2132 2276 6.841781 AGCCTACCCTCCAAAATCTTATTA 57.158 37.500 0.00 0.00 0.00 0.98
2133 2277 5.734031 AGCCTACCCTCCAAAATCTTATT 57.266 39.130 0.00 0.00 0.00 1.40
2134 2278 5.734031 AAGCCTACCCTCCAAAATCTTAT 57.266 39.130 0.00 0.00 0.00 1.73
2135 2279 6.645884 TTAAGCCTACCCTCCAAAATCTTA 57.354 37.500 0.00 0.00 0.00 2.10
2136 2280 5.510430 CTTAAGCCTACCCTCCAAAATCTT 58.490 41.667 0.00 0.00 0.00 2.40
2137 2281 4.628959 GCTTAAGCCTACCCTCCAAAATCT 60.629 45.833 17.00 0.00 34.31 2.40
2138 2282 3.632604 GCTTAAGCCTACCCTCCAAAATC 59.367 47.826 17.00 0.00 34.31 2.17
2139 2283 3.632333 GCTTAAGCCTACCCTCCAAAAT 58.368 45.455 17.00 0.00 34.31 1.82
2140 2284 3.081710 GCTTAAGCCTACCCTCCAAAA 57.918 47.619 17.00 0.00 34.31 2.44
2141 2285 2.801077 GCTTAAGCCTACCCTCCAAA 57.199 50.000 17.00 0.00 34.31 3.28
2160 2304 1.133976 CACCAGGGAGGCTTCAATAGG 60.134 57.143 0.00 0.00 43.14 2.57
2161 2305 1.133976 CCACCAGGGAGGCTTCAATAG 60.134 57.143 0.00 0.00 43.14 1.73
2162 2306 0.918983 CCACCAGGGAGGCTTCAATA 59.081 55.000 0.00 0.00 43.14 1.90
2163 2307 0.846427 TCCACCAGGGAGGCTTCAAT 60.846 55.000 0.00 0.00 42.15 2.57
2164 2308 1.463214 TCCACCAGGGAGGCTTCAA 60.463 57.895 0.00 0.00 42.15 2.69
2165 2309 2.206900 TCCACCAGGGAGGCTTCA 59.793 61.111 0.00 0.00 42.15 3.02
2172 2316 2.609299 TGGCGATTCCACCAGGGA 60.609 61.111 0.00 0.00 46.61 4.20
2179 2323 0.320683 CACACTCAGTGGCGATTCCA 60.321 55.000 10.28 0.00 44.69 3.53
2180 2324 2.460330 CACACTCAGTGGCGATTCC 58.540 57.895 10.28 0.00 44.69 3.01
2189 2333 1.068083 CTGCGGTGTCACACTCAGT 59.932 57.895 17.28 0.00 33.75 3.41
2190 2334 2.313172 GCTGCGGTGTCACACTCAG 61.313 63.158 19.75 19.75 37.67 3.35
2191 2335 2.280119 GCTGCGGTGTCACACTCA 60.280 61.111 8.12 5.62 34.40 3.41
2192 2336 2.024319 GAGCTGCGGTGTCACACTC 61.024 63.158 8.12 0.75 34.40 3.51
2193 2337 2.029666 GAGCTGCGGTGTCACACT 59.970 61.111 8.12 0.00 34.40 3.55
2194 2338 3.044305 GGAGCTGCGGTGTCACAC 61.044 66.667 0.00 0.00 0.00 3.82
2195 2339 3.519973 CTGGAGCTGCGGTGTCACA 62.520 63.158 5.78 0.00 0.00 3.58
2196 2340 2.740055 CTGGAGCTGCGGTGTCAC 60.740 66.667 5.78 0.00 0.00 3.67
2197 2341 3.233980 ACTGGAGCTGCGGTGTCA 61.234 61.111 20.03 0.00 0.00 3.58
2407 2879 6.030228 GCAACTCTTTTTGGCTGTGTATATC 58.970 40.000 0.00 0.00 0.00 1.63
2430 2902 3.963428 ATCCAACTCCAGGATATACGC 57.037 47.619 0.00 0.00 43.90 4.42
2554 3028 7.171337 ACGAATTTCAAATGCTAGCAAAAATGT 59.829 29.630 23.54 15.25 0.00 2.71
2636 3110 5.953183 TGGCATGATGAATTGTGAGTTTAC 58.047 37.500 0.00 0.00 0.00 2.01
2648 3122 6.017192 CCAAAATACGTATCTGGCATGATGAA 60.017 38.462 18.63 0.00 0.00 2.57
2802 3279 3.561725 GCAGTACAGAAACAAGCAGAAGT 59.438 43.478 0.00 0.00 0.00 3.01
2818 3295 2.342354 GCGACATTTTTGCATGCAGTAC 59.658 45.455 21.50 7.07 34.24 2.73
2991 3521 0.545548 GTTGGACCCCAGAGAGGAGT 60.546 60.000 0.00 0.00 41.22 3.85
3112 3642 2.036387 AGGCAACCTACCAACCAAAAC 58.964 47.619 0.00 0.00 28.47 2.43
3239 3769 2.837532 TGTGACAGAGTAGCATGCAA 57.162 45.000 21.98 0.00 0.00 4.08
3425 3955 3.876309 AAAGCTAGTTTTCCACCTGGA 57.124 42.857 0.00 0.00 43.73 3.86
3479 4009 2.420058 AAAAGGAAGCATACCCTCGG 57.580 50.000 0.00 0.00 31.17 4.63
3653 4188 2.756840 TTCTCACAGGCAGATCACTG 57.243 50.000 9.64 9.64 45.91 3.66
3673 4208 3.833559 AGGGATTTCATGGTTTGTCCT 57.166 42.857 0.00 0.00 37.07 3.85
3797 4333 5.263599 TGCTCAATCTACCATGGTTTCAAT 58.736 37.500 25.38 8.83 0.00 2.57
3808 4344 2.812591 CTGGCATGATGCTCAATCTACC 59.187 50.000 17.84 0.00 44.28 3.18
3866 4426 4.679654 GGAGGCAAAAACATCTTTTGTACG 59.320 41.667 10.65 0.00 40.47 3.67
3918 4478 3.119779 TGACACAAAACAAGGTTTCGACC 60.120 43.478 0.00 0.00 0.00 4.79
3974 4535 8.125448 GCCTATTTATGTCATCAAACAAGACTC 58.875 37.037 0.00 0.00 33.56 3.36
3975 4536 7.067494 GGCCTATTTATGTCATCAAACAAGACT 59.933 37.037 0.00 0.00 33.56 3.24
4072 4659 2.198827 TGCCATGTCAGTTCGGAAAT 57.801 45.000 0.00 0.00 0.00 2.17
4188 4779 6.434340 ACAATGAAGGATGGACTTTAAACCTC 59.566 38.462 0.00 0.00 0.00 3.85
4292 4883 3.652057 TTTTTCCCAATGGCCAAACAA 57.348 38.095 10.96 0.00 0.00 2.83
4438 5031 9.859427 TTTGCTGGAATAATTTCTGATAAGTTG 57.141 29.630 0.00 0.00 32.16 3.16
4587 5185 8.622157 TGCAGATACTTGTCTATCTACTGTTAC 58.378 37.037 0.00 0.00 32.59 2.50
4648 5246 5.726560 TCCTGGATTCTGGATAAGATACCA 58.273 41.667 0.00 0.00 37.81 3.25
4656 5254 2.361119 CGACGTTCCTGGATTCTGGATA 59.639 50.000 0.00 0.00 40.09 2.59
4669 5267 0.669625 ACAAGCTTAGCCGACGTTCC 60.670 55.000 0.00 0.00 0.00 3.62
4678 5276 5.942872 TCAATTTGAGCTAACAAGCTTAGC 58.057 37.500 11.08 11.08 46.36 3.09
4918 5525 4.323257 CCTCCGTCCCAATAAAGTTGTACT 60.323 45.833 0.00 0.00 0.00 2.73
5159 5766 8.644216 TGCAAATAATCTGCATTGAATAAGGAT 58.356 29.630 0.00 0.00 44.67 3.24
5280 5887 1.713937 TTATGCGCTGAACATGCCCG 61.714 55.000 9.73 0.00 0.00 6.13
5282 5889 0.248621 GGTTATGCGCTGAACATGCC 60.249 55.000 21.24 6.02 0.00 4.40
5470 6077 4.890581 ACTTGGTTACTTGGTTATTGCACA 59.109 37.500 0.00 0.00 0.00 4.57
5474 6081 8.556213 TTAGCTACTTGGTTACTTGGTTATTG 57.444 34.615 0.00 0.00 0.00 1.90
5528 6135 7.711339 GGTCGAGATAACAACTAGATGGATTTT 59.289 37.037 4.89 0.00 0.00 1.82
5548 6155 4.755411 TGTAGGATTTAGCAAAGGTCGAG 58.245 43.478 0.00 0.00 0.00 4.04
5550 6157 6.018180 GGTTATGTAGGATTTAGCAAAGGTCG 60.018 42.308 0.00 0.00 0.00 4.79
5551 6158 7.054751 AGGTTATGTAGGATTTAGCAAAGGTC 58.945 38.462 0.00 0.00 0.00 3.85
5552 6159 6.970191 AGGTTATGTAGGATTTAGCAAAGGT 58.030 36.000 0.00 0.00 0.00 3.50
5557 6165 7.125811 ACAGAGAAGGTTATGTAGGATTTAGCA 59.874 37.037 0.00 0.00 0.00 3.49
5561 6169 7.496346 TGACAGAGAAGGTTATGTAGGATTT 57.504 36.000 0.00 0.00 0.00 2.17
5574 6182 1.415659 CCTAGGCCATGACAGAGAAGG 59.584 57.143 5.01 0.00 0.00 3.46
5575 6183 1.202627 GCCTAGGCCATGACAGAGAAG 60.203 57.143 24.19 0.00 34.56 2.85
5576 6184 0.833287 GCCTAGGCCATGACAGAGAA 59.167 55.000 24.19 0.00 34.56 2.87
5577 6185 0.031716 AGCCTAGGCCATGACAGAGA 60.032 55.000 30.42 0.00 43.17 3.10
5586 6194 2.124996 ACTTGGGAGCCTAGGCCA 59.875 61.111 30.42 18.28 43.17 5.36
5609 6217 3.053896 GCAACCACCCACCGTAGC 61.054 66.667 0.00 0.00 0.00 3.58
5702 6310 7.094762 TGTCATGTAGAGCCAGTATTATAGACG 60.095 40.741 0.00 0.00 0.00 4.18
5720 6328 8.536175 TGAAAGGTGTACTGATAATGTCATGTA 58.464 33.333 0.00 0.00 35.97 2.29
5765 6373 8.519799 TGAAAGCTGGGTCCTATAAATTAAAG 57.480 34.615 0.00 0.00 0.00 1.85
5777 6385 1.398692 TGTTGTTGAAAGCTGGGTCC 58.601 50.000 0.00 0.00 0.00 4.46
5779 6387 3.432046 CCAATTGTTGTTGAAAGCTGGGT 60.432 43.478 4.43 0.00 0.00 4.51
5802 6410 8.006298 TGTCAAACAACACAGGAAGATTAAAT 57.994 30.769 0.00 0.00 0.00 1.40
5913 6540 4.512571 TGCAAACGGTTAAGTAAAGAGGTC 59.487 41.667 0.00 0.00 0.00 3.85
5929 6556 0.166814 GCTTCCACTAGCTGCAAACG 59.833 55.000 1.02 0.00 38.15 3.60
6020 6647 7.674120 TCAGATATGTTCAATCGAGAATGGAT 58.326 34.615 0.00 0.00 33.87 3.41
6085 6712 1.200716 CAGTAAACATGCACAGGGCTG 59.799 52.381 0.00 0.00 45.15 4.85
6109 6736 7.711339 CGACCCTATTCTAAACTAAAGCAGAAT 59.289 37.037 0.00 0.00 40.10 2.40
6197 6854 5.078411 ACAGTAGAACGATGCTCTTCAAT 57.922 39.130 0.00 0.00 0.00 2.57
6202 6859 4.700692 TGTAGAACAGTAGAACGATGCTCT 59.299 41.667 0.00 0.00 0.00 4.09
6293 6950 6.287589 AGAACCAACTCAAATCTCGATAGT 57.712 37.500 0.00 0.00 37.40 2.12
6383 7040 8.255905 ACAAGATCAATCTGAAAATTTCCCATC 58.744 33.333 3.00 0.00 37.19 3.51
6423 7080 3.260632 TCGTCTTCAATCCCATCAGTCAA 59.739 43.478 0.00 0.00 0.00 3.18
6585 7242 7.229306 AGCAATCGATTCTTTAGATGCCATTAA 59.771 33.333 7.92 0.00 0.00 1.40
6586 7243 6.712095 AGCAATCGATTCTTTAGATGCCATTA 59.288 34.615 7.92 0.00 0.00 1.90
6597 7257 2.996631 AGGCTCAGCAATCGATTCTTT 58.003 42.857 7.92 0.00 0.00 2.52
6618 7278 4.199432 AGTTCACTGCTTTCATCTCGAT 57.801 40.909 0.00 0.00 0.00 3.59
6633 7293 3.872771 TCCGGTAACAGTTCAAAGTTCAC 59.127 43.478 0.00 0.00 0.00 3.18
6640 7300 4.710324 ACAATCTTCCGGTAACAGTTCAA 58.290 39.130 0.00 0.00 0.00 2.69
6653 7313 9.026074 CGATTAGACTCTCTAAAACAATCTTCC 57.974 37.037 0.00 0.00 41.72 3.46
6660 7320 4.439700 CGGGCGATTAGACTCTCTAAAACA 60.440 45.833 0.00 0.00 41.72 2.83
6678 7338 1.338973 TGTACTTATAGCTTCCGGGCG 59.661 52.381 0.00 0.00 37.29 6.13
6703 7363 1.002033 CTGGCTCTGTCAAAGTGCAAC 60.002 52.381 0.00 0.00 45.38 4.17
6737 7397 1.597937 GCCACAGCTGAAGTTTTCACG 60.598 52.381 23.35 0.00 35.46 4.35
6777 7437 7.061441 CAGTTTTGTATCAATTAACTGCAGCAG 59.939 37.037 21.54 21.54 39.21 4.24
6797 7457 3.490761 CCGTTTGCTGTCCATTCAGTTTT 60.491 43.478 0.00 0.00 37.70 2.43
6907 7567 3.311322 CACTTCGAACAAAAGGCACTACA 59.689 43.478 0.00 0.00 38.49 2.74
6908 7568 3.311596 ACACTTCGAACAAAAGGCACTAC 59.688 43.478 0.00 0.00 38.49 2.73
6909 7569 3.537580 ACACTTCGAACAAAAGGCACTA 58.462 40.909 0.00 0.00 38.49 2.74
6911 7571 2.844122 ACACTTCGAACAAAAGGCAC 57.156 45.000 0.00 0.00 0.00 5.01
6912 7572 2.490115 ACAACACTTCGAACAAAAGGCA 59.510 40.909 0.00 0.00 0.00 4.75
6913 7573 3.145212 ACAACACTTCGAACAAAAGGC 57.855 42.857 0.00 0.00 0.00 4.35
6945 8035 8.192774 CAGTGCAAACTTGGAATCACATATTAT 58.807 33.333 0.00 0.00 0.00 1.28
6969 8062 6.688637 TTTCTAAATGATGTGCATCTCCAG 57.311 37.500 12.64 5.81 38.60 3.86
6970 8063 7.012989 CAGATTTCTAAATGATGTGCATCTCCA 59.987 37.037 12.64 0.00 38.60 3.86
6972 8065 8.151141 TCAGATTTCTAAATGATGTGCATCTC 57.849 34.615 12.64 0.00 38.60 2.75
6973 8066 8.515695 TTCAGATTTCTAAATGATGTGCATCT 57.484 30.769 12.64 0.00 38.60 2.90
6974 8067 9.577110 TTTTCAGATTTCTAAATGATGTGCATC 57.423 29.630 5.30 5.30 35.78 3.91
7031 8124 8.090214 CACTTGTCCAATTTATCCAAAACAGAT 58.910 33.333 0.00 0.00 0.00 2.90
7049 8142 5.904362 AAAAATCTAGATGCCACTTGTCC 57.096 39.130 5.86 0.00 0.00 4.02
7072 8165 6.935741 AAAAATACTGCACTGTACAGACAA 57.064 33.333 29.30 12.52 38.55 3.18
7155 8248 7.121315 GTCAAAGCTCTTACAAATAAGATGGGT 59.879 37.037 0.00 0.00 44.64 4.51
7159 8252 8.951243 GGAAGTCAAAGCTCTTACAAATAAGAT 58.049 33.333 0.00 0.00 44.64 2.40
7177 8270 8.472669 CTTACAAATAAGACGACGGGAAGTCAA 61.473 40.741 0.00 0.00 43.70 3.18
7178 8271 7.062722 CTTACAAATAAGACGACGGGAAGTCA 61.063 42.308 0.00 0.00 43.70 3.41
7179 8272 3.582780 ACAAATAAGACGACGGGAAGTC 58.417 45.455 0.00 0.00 46.16 3.01
7180 8273 3.672767 ACAAATAAGACGACGGGAAGT 57.327 42.857 0.00 0.00 0.00 3.01
7181 8274 5.404946 TCTTACAAATAAGACGACGGGAAG 58.595 41.667 0.00 0.00 41.58 3.46
7182 8275 5.389859 TCTTACAAATAAGACGACGGGAA 57.610 39.130 0.00 0.00 41.58 3.97
7191 8284 7.097192 ACGCTCTCAATGTCTTACAAATAAGA 58.903 34.615 0.00 0.00 43.75 2.10
7192 8285 7.295952 ACGCTCTCAATGTCTTACAAATAAG 57.704 36.000 0.00 0.00 39.45 1.73
7193 8286 8.766000 TTACGCTCTCAATGTCTTACAAATAA 57.234 30.769 0.00 0.00 0.00 1.40
7194 8287 8.033038 ACTTACGCTCTCAATGTCTTACAAATA 58.967 33.333 0.00 0.00 0.00 1.40
7195 8288 6.874134 ACTTACGCTCTCAATGTCTTACAAAT 59.126 34.615 0.00 0.00 0.00 2.32
7196 8289 6.220930 ACTTACGCTCTCAATGTCTTACAAA 58.779 36.000 0.00 0.00 0.00 2.83
7197 8290 5.779922 ACTTACGCTCTCAATGTCTTACAA 58.220 37.500 0.00 0.00 0.00 2.41
7198 8291 5.386958 ACTTACGCTCTCAATGTCTTACA 57.613 39.130 0.00 0.00 0.00 2.41
7199 8292 5.742926 GGTACTTACGCTCTCAATGTCTTAC 59.257 44.000 0.00 0.00 0.00 2.34
7200 8293 5.416639 TGGTACTTACGCTCTCAATGTCTTA 59.583 40.000 0.00 0.00 0.00 2.10
7201 8294 4.219944 TGGTACTTACGCTCTCAATGTCTT 59.780 41.667 0.00 0.00 0.00 3.01
7216 8309 9.444600 GAACTGAGAAAATAACCATGGTACTTA 57.555 33.333 20.12 7.61 0.00 2.24
7252 8348 3.077359 GGAACAAGGGACAATGAGACTG 58.923 50.000 0.00 0.00 0.00 3.51
7264 8360 0.951040 GACTCGCACAGGAACAAGGG 60.951 60.000 0.00 0.00 0.00 3.95
7267 8363 0.531974 GTGGACTCGCACAGGAACAA 60.532 55.000 0.00 0.00 0.00 2.83
7268 8364 1.069090 GTGGACTCGCACAGGAACA 59.931 57.895 0.00 0.00 0.00 3.18
7269 8365 0.531974 TTGTGGACTCGCACAGGAAC 60.532 55.000 0.00 0.00 32.51 3.62
7270 8366 0.396435 ATTGTGGACTCGCACAGGAA 59.604 50.000 0.00 0.00 32.51 3.36
7271 8367 1.262417 TATTGTGGACTCGCACAGGA 58.738 50.000 0.00 0.00 32.51 3.86
7272 8368 2.315925 ATATTGTGGACTCGCACAGG 57.684 50.000 0.00 0.00 32.51 4.00
7273 8369 2.797156 GCTATATTGTGGACTCGCACAG 59.203 50.000 0.00 0.00 32.51 3.66
7281 8377 9.547753 TTTATTTCTCTGAGCTATATTGTGGAC 57.452 33.333 0.00 0.00 0.00 4.02
7291 8387 6.058183 GCCCTTCATTTATTTCTCTGAGCTA 58.942 40.000 0.00 0.00 0.00 3.32
7328 8424 5.365403 TGCGTTACAAAAGTAAATGGAGG 57.635 39.130 0.00 0.00 0.00 4.30
7343 8439 4.863131 AGTCAAAGCTACACTATGCGTTAC 59.137 41.667 0.00 0.00 30.50 2.50
7355 8451 2.994578 GACGAAGGGAAGTCAAAGCTAC 59.005 50.000 0.00 0.00 37.34 3.58
7358 8454 2.070028 GAGACGAAGGGAAGTCAAAGC 58.930 52.381 0.00 0.00 39.67 3.51
7368 8464 3.563808 TGTCAAATTGTTGAGACGAAGGG 59.436 43.478 0.00 0.00 44.44 3.95
7467 8563 8.375506 TGTATTTCTTAGGTTAGCCATATGAGG 58.624 37.037 3.65 0.00 37.19 3.86
7525 8621 7.600375 TGCACAACTCTACATTTGAAACAAAAA 59.400 29.630 0.00 0.00 0.00 1.94
7526 8622 7.093354 TGCACAACTCTACATTTGAAACAAAA 58.907 30.769 0.00 0.00 0.00 2.44
7538 8634 2.256306 TGGATCCTGCACAACTCTACA 58.744 47.619 14.23 0.00 0.00 2.74
7545 8641 2.041485 TGATTCCTTGGATCCTGCACAA 59.959 45.455 14.23 0.00 0.00 3.33
7586 8682 9.699410 AACACATAAATCTCATAGGAATCCAAA 57.301 29.630 0.61 0.00 0.00 3.28
7645 8741 1.133181 TCCCATGAGGCAAGACACCA 61.133 55.000 0.00 0.00 34.51 4.17
7647 8743 1.028868 GCTCCCATGAGGCAAGACAC 61.029 60.000 0.00 0.00 39.14 3.67
7685 8781 9.226345 CTTTAAGATTTCACGGAGCAAAATATC 57.774 33.333 0.00 0.00 0.00 1.63
7687 8783 7.027161 GCTTTAAGATTTCACGGAGCAAAATA 58.973 34.615 0.00 0.00 0.00 1.40
7690 8786 4.518970 AGCTTTAAGATTTCACGGAGCAAA 59.481 37.500 0.00 0.00 0.00 3.68
7698 8794 7.468922 ACTTTTGCAAGCTTTAAGATTTCAC 57.531 32.000 13.40 0.00 32.57 3.18
7699 8795 8.413229 AGTACTTTTGCAAGCTTTAAGATTTCA 58.587 29.630 13.40 0.00 32.57 2.69
7713 8809 4.852134 ACATGCATGAGTACTTTTGCAA 57.148 36.364 32.75 16.23 46.97 4.08
7721 8817 4.331168 GTCTCTTGGAACATGCATGAGTAC 59.669 45.833 32.75 19.97 39.70 2.73
7725 8821 3.076621 GTGTCTCTTGGAACATGCATGA 58.923 45.455 32.75 7.78 39.30 3.07
7733 8829 4.260661 GGAAAAAGACGTGTCTCTTGGAAC 60.261 45.833 2.48 0.00 39.39 3.62
7746 8842 0.306533 CACCCACGTGGAAAAAGACG 59.693 55.000 36.07 18.20 41.41 4.18
7763 8859 5.402270 GTGCTGGAAAATGAAATGTGTACAC 59.598 40.000 19.36 19.36 0.00 2.90
7793 8889 5.592688 GGTTGCATAGGTACATTGTAATGGT 59.407 40.000 9.22 0.00 40.70 3.55
7796 8892 5.827797 CCAGGTTGCATAGGTACATTGTAAT 59.172 40.000 0.00 0.00 0.00 1.89
7797 8893 5.189928 CCAGGTTGCATAGGTACATTGTAA 58.810 41.667 0.00 0.00 0.00 2.41
7798 8894 4.226394 ACCAGGTTGCATAGGTACATTGTA 59.774 41.667 0.00 0.00 31.32 2.41
7799 8895 3.010138 ACCAGGTTGCATAGGTACATTGT 59.990 43.478 0.00 0.00 31.32 2.71
7800 8896 3.620488 ACCAGGTTGCATAGGTACATTG 58.380 45.455 0.00 0.00 31.32 2.82
7801 8897 3.265737 TGACCAGGTTGCATAGGTACATT 59.734 43.478 0.00 0.00 33.77 2.71
7802 8898 2.843730 TGACCAGGTTGCATAGGTACAT 59.156 45.455 0.00 0.00 33.77 2.29
7803 8899 2.236146 CTGACCAGGTTGCATAGGTACA 59.764 50.000 0.00 0.00 33.77 2.90
7819 8918 0.814010 ACTTGGTGCGTCAACTGACC 60.814 55.000 4.30 0.00 41.86 4.02
7839 8938 6.554419 TCTGAGTTTGACATTCTTTGTGTTG 58.446 36.000 0.00 0.00 39.18 3.33
7871 8970 7.994425 TTCATTGGTTGTTGCTCTTAATAGA 57.006 32.000 0.00 0.00 0.00 1.98
7872 8971 9.474920 TTTTTCATTGGTTGTTGCTCTTAATAG 57.525 29.630 0.00 0.00 0.00 1.73
7873 8972 9.995003 ATTTTTCATTGGTTGTTGCTCTTAATA 57.005 25.926 0.00 0.00 0.00 0.98
7874 8973 8.907222 ATTTTTCATTGGTTGTTGCTCTTAAT 57.093 26.923 0.00 0.00 0.00 1.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.